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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8024E12.3
        

               
Conread position:
               
514-940
               

               
Cow position:
               
chr1:97954668-97954279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
61, 42
               

               
Conread position:
               
534-948
               

               
Cow position:
               
chr1:86340670-86340245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
27, 113
               

               
Conread position:
               
535-930
               

               
Cow position:
               
chr1:31841947-31841529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
29, 91
               

               
Conread position:
               
537-941
               

               
Cow position:
               
chr1:79165275-79164877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
185, 50
               

               
Conread position:
               
544-950
               

               
Cow position:
               
chr1:51417581-51417979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
25, 86
               

               
Conread position:
               
547-951
               

               
Cow position:
               
chr1:102105550-102105952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
176, 7
               

               
Conread position:
               
553-950
               

               
Cow position:
               
chr1:23186973-23186587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 102
               

               
Conread position:
               
560-754
               

               
Cow position:
               
chr1:85826174-85826368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
114, 63
               

               
Conread position:
               
562-799
               

               
Cow position:
               
chr1:52956085-52956317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
13, 7
               

               
Conread position:
               
562-807
               

               
Cow position:
               
chr1:53595151-53595393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
13, 7
               

               
Conread position:
               
565-951
               

               
Cow position:
               
chr1:53374268-53374643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
375, 20
               

               
Conread position:
               
565-958
               

               
Cow position:
               
chr1:31272605-31272227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
28, 16
               

               
Conread position:
               
566-700
               

               
Cow position:
               
chr1:98708276-98708410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
22, 59
               

               
Conread position:
               
566-753
               

               
Cow position:
               
chr1:81472708-81472891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
9, 141
               

               
Conread position:
               
566-820
               

               
Cow position:
               
chr1:68951465-68951712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
139, 19
               

               
Conread position:
               
566-820
               

               
Cow position:
               
chr1:101867189-101867437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
153, 60
               

               
Conread position:
               
566-860
               

               
Cow position:
               
chr1:94261381-94261662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
566-936
               

               
Cow position:
               
chr1:68855008-68855366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
159, 19
               

               
Conread position:
               
566-941
               

               
Cow position:
               
chr1:484632-484258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 125
               

               
Conread position:
               
566-941
               

               
Cow position:
               
chr1:22525714-22526079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 48
               

               
Conread position:
               
566-945
               

               
Cow position:
               
chr1:102266433-102266061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
55, 25
               

               
Conread position:
               
566-949
               

               
Cow position:
               
chr1:12464830-12464452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 59
               

               
Conread position:
               
566-950
               

               
Cow position:
               
chr1:8456-8834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
26, 82
               

               
Conread position:
               
566-950
               

               
Cow position:
               
chr1:79844302-79844693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
26, 58
               

               
Conread position:
               
566-951
               

               
Cow position:
               
chr1:42887429-42887065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
27, 59
               

               
Conread position:
               
566-951
               

               
Cow position:
               
chr1:46030519-46030145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
372, 19
               

               
Conread position:
               
566-951
               

               
Cow position:
               
chr1:82936748-82936388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
157, 19
               

               
Conread position:
               
567-951
               

               
Cow position:
               
chr1:69539535-69539901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
25, 6
               

               
Conread position:
               
568-941
               

               
Cow position:
               
chr1:86279245-86279622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
8, 93
               

               
Conread position:
               
569-736
               

               
Cow position:
               
chr1:12596065-12595898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
19, 55
               

               
Conread position:
               
569-751
               

               
Cow position:
               
chr1:1801980-1802159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
153, 16
               

               
Conread position:
               
569-941
               

               
Cow position:
               
chr1:71253714-71253329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
24, 55
               

               
Conread position:
               
569-941
               

               
Cow position:
               
chr1:76470491-76470862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
23, 134
               

               
Conread position:
               
569-948
               

               
Cow position:
               
chr1:7442821-7443195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 38
               

               
Conread position:
               
569-948
               

               
Cow position:
               
chr1:69264653-69265039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
24, 82
               

               
Conread position:
               
569-954
               

               
Cow position:
               
chr1:4401986-4402366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
189, 20
               

               
Conread position:
               
569-957
               

               
Cow position:
               
chr1:10632890-10633259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
571-941
               

               
Cow position:
               
chr1:7739801-7740148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
159, 30
               

               
Conread position:
               
572-951
               

               
Cow position:
               
chr1:7971263-7971620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
21, 53
               

               
Conread position:
               
573-884
               

               
Cow position:
               
chr1:41115872-41115567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
15, 52
               

               
Conread position:
               
574-820
               

               
Cow position:
               
chr1:85596781-85597025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
19, 134
               

               
Conread position:
               
574-848
               

               
Cow position:
               
chr1:100705974-100706241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
45, 128
               

               
Conread position:
               
574-936
               

               
Cow position:
               
chr1:63530418-63530759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
156, 96
               

               
Conread position:
               
574-937
               

               
Cow position:
               
chr1:65318419-65318778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 83
               

               
Conread position:
               
574-941
               

               
Cow position:
               
chr1:56225313-56225671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 14
               

               
Conread position:
               
574-941
               

               
Cow position:
               
chr1:72011966-72011617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 131
               

               
Conread position:
               
574-941
               

               
Cow position:
               
chr1:101822660-101822299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
13, 101
               

               
Conread position:
               
574-948
               

               
Cow position:
               
chr1:6166085-6166444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
14, 78
               

               
Conread position:
               
574-948
               

               
Cow position:
               
chr1:20002398-20002022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
19, 207
               

               
Conread position:
               
574-949
               

               
Cow position:
               
chr1:72068996-72068621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 51
               

               
Conread position:
               
574-951
               

               
Cow position:
               
chr1:10778411-10778771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
364, 44
               

               
Conread position:
               
575-937
               

               
Cow position:
               
chr1:24778140-24777783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
13, 38
               

               
Conread position:
               
576-705
               

               
Cow position:
               
chr1:72422727-72422598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
19, 49
               

               
Conread position:
               
576-718
               

               
Cow position:
               
chr1:73536583-73536724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
47, 132
               

               
Conread position:
               
576-751
               

               
Cow position:
               
chr1:20544145-20544316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
139, 14
               

               
Conread position:
               
576-846
               

               
Cow position:
               
chr1:66430150-66430404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
576-850
               

               
Cow position:
               
chr1:67305395-67305125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
12, 51
               

               
Conread position:
               
576-867
               

               
Cow position:
               
chr1:7022967-7023255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
154, 48
               

               
Conread position:
               
576-937
               

               
Cow position:
               
chr1:43872485-43872108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
16, 49
               

               
Conread position:
               
576-941
               

               
Cow position:
               
chr1:34771655-34771294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 15
               

               
Conread position:
               
576-943
               

               
Cow position:
               
chr1:23488659-23488296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
44, 15
               

               
Conread position:
               
576-945
               

               
Cow position:
               
chr1:41056531-41056889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
362, 9
               

               
Conread position:
               
576-950
               

               
Cow position:
               
chr1:101836895-101837267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
264, 15
               

               
Conread position:
               
576-951
               

               
Cow position:
               
chr1:4691444-4691803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
147, 15
               

               
Conread position:
               
576-959
               

               
Cow position:
               
chr1:70343891-70344272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
271, 16
               

               
Conread position:
               
576-959
               

               
Cow position:
               
chr1:91066307-91065935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
11, 50
               

               
Conread position:
               
577-714
               

               
Cow position:
               
chr1:49839354-49839489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
15, 47
               

               
Conread position:
               
577-719
               

               
Cow position:
               
chr1:3244700-3244835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
16, 50
               

               
Conread position:
               
577-743
               

               
Cow position:
               
chr1:5873125-5872957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
577-752
               

               
Cow position:
               
chr1:22448740-22448562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
11, 48
               

               
Conread position:
               
577-843
               

               
Cow position:
               
chr1:100800202-100800464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
26, 19
               

               
Conread position:
               
577-848
               

               
Cow position:
               
chr1:95215335-95215075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
15, 130
               

               
Conread position:
               
577-874
               

               
Cow position:
               
chr1:34300701-34300408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
145, 25
               

               
Conread position:
               
577-874
               

               
Cow position:
               
chr1:89742151-89741852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
17, 110
               

               
Conread position:
               
577-879
               

               
Cow position:
               
chr1:39069108-39068812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
11, 48
               

               
Conread position:
               
577-901
               

               
Cow position:
               
chr1:52039483-52039798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
15, 47
               

               
Conread position:
               
577-925
               

               
Cow position:
               
chr1:68845639-68845317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
15, 80
               

               
Conread position:
               
577-929
               

               
Cow position:
               
chr1:6941312-6941659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
15, 52
               

               
Conread position:
               
577-929
               

               
Cow position:
               
chr1:6958725-6959072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
15, 52
               

               
Conread position:
               
577-929
               

               
Cow position:
               
chr1:11914031-11913688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 95
               

               
Conread position:
               
577-939
               

               
Cow position:
               
chr1:33331238-33330899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
15, 47
               

               
Conread position:
               
577-941
               

               
Cow position:
               
chr1:10942245-10941893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 11
               

               
Conread position:
               
577-941
               

               
Cow position:
               
chr1:10964141-10964493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 11
               

               
Conread position:
               
577-941
               

               
Cow position:
               
chr1:61742613-61742251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
138, 122
               

               
Conread position:
               
577-941
               

               
Cow position:
               
chr1:74084350-74083983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 55
               

               
Conread position:
               
577-941
               

               
Cow position:
               
chr1:75744707-75745065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 48
               

               
Conread position:
               
577-941
               

               
Cow position:
               
chr1:76613283-76612927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
44, 10
               

               
Conread position:
               
577-941
               

               
Cow position:
               
chr1:97611806-97611468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
15, 47
               

               
Conread position:
               
577-950
               

               
Cow position:
               
chr1:40531267-40530871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
43, 14
               

               
Conread position:
               
577-954
               

               
Cow position:
               
chr1:15547315-15547683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
14, 107
               

               
Conread position:
               
577-956
               

               
Cow position:
               
chr1:61742121-61741744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 43
               

               
Conread position:
               
577-958
               

               
Cow position:
               
chr1:36998039-36998405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
15, 96
               

               
Conread position:
               
577-959
               

               
Cow position:
               
chr1:56225642-56226003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
109, 22
               

               
Conread position:
               
577-960
               

               
Cow position:
               
chr1:44506814-44507195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 131
               

               
Conread position:
               
578-809
               

               
Cow position:
               
chr1:44769264-44769033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
102, 46
               

               
Conread position:
               
578-848
               

               
Cow position:
               
chr1:37309667-37309404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
23, 98
               

               
Conread position:
               
578-874
               

               
Cow position:
               
chr1:77880887-77880594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
126, 48
               

               
Conread position:
               
578-937
               

               
Cow position:
               
chr1:57297322-57297709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
41, 206
               

               
Conread position:
               
578-951
               

               
Cow position:
               
chr1:77462208-77462554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
14, 46
               

               
Conread position:
               
579-736
               

               
Cow position:
               
chr1:41004514-41004357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
8, 45
               

               
Conread position:
               
579-927
               

               
Cow position:
               
chr1:91811636-91811976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
13, 47
               

               
Conread position:
               
579-941
               

               
Cow position:
               
chr1:102756579-102756231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
579-944
               

               
Cow position:
               
chr1:53369056-53369406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
127, 17
               

               
Conread position:
               
579-957
               

               
Cow position:
               
chr1:197155-196784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 45
               

               
Conread position:
               
580-855
               

               
Cow position:
               
chr1:24534403-24534135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
580-930
               

               
Cow position:
               
chr1:100761929-100762268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
12, 33
               

               
Conread position:
               
580-937
               

               
Cow position:
               
chr1:84239263-84238919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
15, 45
               

               
Conread position:
               
580-949
               

               
Cow position:
               
chr1:52329685-52329308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
13, 219
               

               
Conread position:
               
581-697
               

               
Cow position:
               
chr1:56711768-56711652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
581-751
               

               
Cow position:
               
chr1:3243789-3243954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
581-761
               

               
Cow position:
               
chr1:11770440-11770264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
11, 104
               

               
Conread position:
               
581-766
               

               
Cow position:
               
chr1:45535556-45535740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
11, 44
               

               
Conread position:
               
581-800
               

               
Cow position:
               
chr1:8984835-8984614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
8, 44
               

               
Conread position:
               
581-821
               

               
Cow position:
               
chr1:98310916-98311159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
11, 138
               

               
Conread position:
               
581-864
               

               
Cow position:
               
chr1:101632488-101632205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
11, 45
               

               
Conread position:
               
581-875
               

               
Cow position:
               
chr1:5579910-5580197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
11, 37
               

               
Conread position:
               
581-911
               

               
Cow position:
               
chr1:49433410-49433086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
42, 60
               

               
Conread position:
               
581-935
               

               
Cow position:
               
chr1:31348590-31348239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 130
               

               
Conread position:
               
581-936
               

               
Cow position:
               
chr1:15333732-15334088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
11, 27
               

               
Conread position:
               
581-941
               

               
Cow position:
               
chr1:61884770-61885117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 36
               

               
Conread position:
               
581-941
               

               
Cow position:
               
chr1:77620402-77620754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
11, 47
               

               
Conread position:
               
581-944
               

               
Cow position:
               
chr1:74929863-74929500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
11, 92
               

               
Conread position:
               
581-951
               

               
Cow position:
               
chr1:68817948-68817586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 43
               

               
Conread position:
               
581-951
               

               
Cow position:
               
chr1:87095380-87094998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 258
               

               
Conread position:
               
581-951
               

               
Cow position:
               
chr1:102784815-102785160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
139, 38
               

               
Conread position:
               
581-955
               

               
Cow position:
               
chr1:34159686-34160050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
38, 105
               

               
Conread position:
               
581-959
               

               
Cow position:
               
chr1:52435121-52435498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 82
               

               
Conread position:
               
581-959
               

               
Cow position:
               
chr1:71119363-71119744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 68
               

               
Conread position:
               
581-960
               

               
Cow position:
               
chr1:14759499-14759133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
93, 28
               

               
Conread position:
               
581-960
               

               
Cow position:
               
chr1:96081335-96081703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
11, 67
               

               
Conread position:
               
582-918
               

               
Cow position:
               
chr1:72103699-72104036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
44, 114
               

               
Conread position:
               
582-941
               

               
Cow position:
               
chr1:29627059-29626706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
65, 44
               

               
Conread position:
               
582-959
               

               
Cow position:
               
chr1:63390921-63390540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 136
               

               
Conread position:
               
583-959
               

               
Cow position:
               
chr1:4243489-4243107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
137, 112
               

               
Conread position:
               
584-941
               

               
Cow position:
               
chr1:874501-874868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 28
               

               
Conread position:
               
585-696
               

               
Cow position:
               
chr1:89395452-89395567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
585-739
               

               
Cow position:
               
chr1:58419792-58419942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
138, 121
               

               
Conread position:
               
585-752
               

               
Cow position:
               
chr1:64962813-64962648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
44, 80
               

               
Conread position:
               
585-752
               

               
Cow position:
               
chr1:99095217-99095382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
585-761
               

               
Cow position:
               
chr1:64421190-64421359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
137, 58
               

               
Conread position:
               
585-799
               

               
Cow position:
               
chr1:1991565-1991352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
114, 38
               

               
Conread position:
               
585-896
               

               
Cow position:
               
chr1:1185596-1185892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
35, 84
               

               
Conread position:
               
585-929
               

               
Cow position:
               
chr1:11729037-11729365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
183, 38
               

               
Conread position:
               
585-938
               

               
Cow position:
               
chr1:16767225-16766884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
585-939
               

               
Cow position:
               
chr1:90621655-90621303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 39
               

               
Conread position:
               
585-940
               

               
Cow position:
               
chr1:1981258-1980906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
138, 38
               

               
Conread position:
               
585-941
               

               
Cow position:
               
chr1:3323717-3324079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
33, 95
               

               
Conread position:
               
585-941
               

               
Cow position:
               
chr1:61012168-61012511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
7, 42
               

               
Conread position:
               
585-941
               

               
Cow position:
               
chr1:74956166-74955827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 186
               

               
Conread position:
               
585-941
               

               
Cow position:
               
chr1:84812077-84811736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 38
               

               
Conread position:
               
585-941
               

               
Cow position:
               
chr1:100450329-100449987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
12, 148
               

               
Conread position:
               
585-942
               

               
Cow position:
               
chr1:93499482-93499825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
190, 38
               

               
Conread position:
               
585-951
               

               
Cow position:
               
chr1:724594-724954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
134, 23
               

               
Conread position:
               
585-959
               

               
Cow position:
               
chr1:81290370-81290728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
138, 32
               

               
Conread position:
               
586-873
               

               
Cow position:
               
chr1:5539421-5539136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
18, 73
               

               
Conread position:
               
586-910
               

               
Cow position:
               
chr1:89785767-89786085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
20, 15
               

               
Conread position:
               
586-941
               

               
Cow position:
               
chr1:89510065-89509726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
588-816
               

               
Cow position:
               
chr1:89485430-89485663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
13, 127
               

               
Conread position:
               
588-842
               

               
Cow position:
               
chr1:64251193-64250943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
107, 35
               

               
Conread position:
               
588-937
               

               
Cow position:
               
chr1:89448756-89449099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 35
               

               
Conread position:
               
588-949
               

               
Cow position:
               
chr1:48444335-48443978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
221, 29
               

               
Conread position:
               
588-955
               

               
Cow position:
               
chr1:64572371-64572734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 36
               

               
Conread position:
               
589-824
               

               
Cow position:
               
chr1:5023896-5023669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
145, 34
               

               
Conread position:
               
589-947
               

               
Cow position:
               
chr1:12871150-12870799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
127, 36
               

               
Conread position:
               
590-938
               

               
Cow position:
               
chr1:14309177-14308827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
36, 127
               

               
Conread position:
               
591-695
               

               
Cow position:
               
chr1:83593943-83593838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
591-700
               

               
Cow position:
               
chr1:52506691-52506585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
591-704
               

               
Cow position:
               
chr1:15311731-15311843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
591-713
               

               
Cow position:
               
chr1:63905609-63905489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
591-717
               

               
Cow position:
               
chr1:65909388-65909514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
122, 115
               

               
Conread position:
               
591-719
               

               
Cow position:
               
chr1:75967293-75967416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
591-720
               

               
Cow position:
               
chr1:51654272-51654399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
591-720
               

               
Cow position:
               
chr1:90595693-90595564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
27, 116
               

               
Conread position:
               
591-736
               

               
Cow position:
               
chr1:57264134-57263989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
127, 33
               

               
Conread position:
               
591-752
               

               
Cow position:
               
chr1:666221-666385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
22, 109
               

               
Conread position:
               
591-752
               

               
Cow position:
               
chr1:12988907-12989071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
28, 52
               

               
Conread position:
               
591-752
               

               
Cow position:
               
chr1:43447970-43447809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
8, 35
               

               
Conread position:
               
591-752
               

               
Cow position:
               
chr1:73561788-73561628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
35, 81
               

               
Conread position:
               
591-753
               

               
Cow position:
               
chr1:33811791-33811950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
111, 33
               

               
Conread position:
               
591-753
               

               
Cow position:
               
chr1:82443595-82443434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
131, 115
               

               
Conread position:
               
591-753
               

               
Cow position:
               
chr1:99637917-99637760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
591-753
               

               
Cow position:
               
chr1:100812708-100812555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
131, 52
               

               
Conread position:
               
591-755
               

               
Cow position:
               
chr1:34000771-34000933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
31, 106
               

               
Conread position:
               
591-759
               

               
Cow position:
               
chr1:29671658-29671495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
118, 52
               

               
Conread position:
               
591-761
               

               
Cow position:
               
chr1:47008893-47009061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
133, 33
               

               
Conread position:
               
591-761
               

               
Cow position:
               
chr1:51684662-51684835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
591-768
               

               
Cow position:
               
chr1:76222829-76222653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
38, 52
               

               
Conread position:
               
591-794
               

               
Cow position:
               
chr1:24445765-24445567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
591-794
               

               
Cow position:
               
chr1:26729586-26729779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
591-797
               

               
Cow position:
               
chr1:83410305-83410509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
152, 104
               

               
Conread position:
               
591-805
               

               
Cow position:
               
chr1:1165467-1165671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
177, 51
               

               
Conread position:
               
591-807
               

               
Cow position:
               
chr1:95178814-95179028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
39, 116
               

               
Conread position:
               
591-808
               

               
Cow position:
               
chr1:102647411-102647198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
69, 73
               

               
Conread position:
               
591-809
               

               
Cow position:
               
chr1:87440330-87440543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
106, 28
               

               
Conread position:
               
591-812
               

               
Cow position:
               
chr1:6788424-6788204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
113, 32
               

               
Conread position:
               
591-812
               

               
Cow position:
               
chr1:56634959-56635177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
104, 37
               

               
Conread position:
               
591-824
               

               
Cow position:
               
chr1:81563598-81563836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
111, 34
               

               
Conread position:
               
591-825
               

               
Cow position:
               
chr1:4374477-4374245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
57, 16
               

               
Conread position:
               
591-830
               

               
Cow position:
               
chr1:90640890-90641125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
35, 184
               

               
Conread position:
               
591-831
               

               
Cow position:
               
chr1:20204889-20205125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
131, 95
               

               
Conread position:
               
591-831
               

               
Cow position:
               
chr1:43703269-43703507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
131, 33
               

               
Conread position:
               
591-840
               

               
Cow position:
               
chr1:4414346-4414102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
119, 32
               

               
Conread position:
               
591-842
               

               
Cow position:
               
chr1:77683219-77683461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
134, 35
               

               
Conread position:
               
591-842
               

               
Cow position:
               
chr1:88652492-88652745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
131, 32
               

               
Conread position:
               
591-847
               

               
Cow position:
               
chr1:36932019-36932268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
172, 33
               

               
Conread position:
               
591-848
               

               
Cow position:
               
chr1:42545925-42545664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
110, 188
               

               
Conread position:
               
591-848
               

               
Cow position:
               
chr1:98360543-98360289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
31, 99
               

               
Conread position:
               
591-854
               

               
Cow position:
               
chr1:4291020-4291285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
29, 166
               

               
Conread position:
               
591-855
               

               
Cow position:
               
chr1:23512793-23512538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
131, 34
               

               
Conread position:
               
591-855
               

               
Cow position:
               
chr1:24876127-24876384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
35, 56
               

               
Conread position:
               
591-855
               

               
Cow position:
               
chr1:84255620-84255889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
28, 108
               

               
Conread position:
               
591-860
               

               
Cow position:
               
chr1:3137789-3138040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
35, 116
               

               
Conread position:
               
591-860
               

               
Cow position:
               
chr1:25281814-25281530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
57, 32
               

               
Conread position:
               
591-860
               

               
Cow position:
               
chr1:39418260-39417988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
109, 238
               

               
Conread position:
               
591-860
               

               
Cow position:
               
chr1:56229113-56229366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
244, 33
               

               
Conread position:
               
591-860
               

               
Cow position:
               
chr1:95176801-95177064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
132, 32
               

               
Conread position:
               
591-865
               

               
Cow position:
               
chr1:85647920-85647648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
132, 32
               

               
Conread position:
               
591-867
               

               
Cow position:
               
chr1:74927742-74928018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
30, 66
               

               
Conread position:
               
591-869
               

               
Cow position:
               
chr1:81913286-81913021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
118, 32
               

               
Conread position:
               
591-869
               

               
Cow position:
               
chr1:97696602-97696879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
44, 156
               

               
Conread position:
               
591-872
               

               
Cow position:
               
chr1:52753304-52753021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
35, 82
               

               
Conread position:
               
591-873
               

               
Cow position:
               
chr1:93554705-93554976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
591-874
               

               
Cow position:
               
chr1:47233617-47233335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
131, 32
               

               
Conread position:
               
591-874
               

               
Cow position:
               
chr1:57420866-57420595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
591-875
               

               
Cow position:
               
chr1:21460726-21461011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
28, 157
               

               
Conread position:
               
591-875
               

               
Cow position:
               
chr1:21835807-21836071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
234, 33
               

               
Conread position:
               
591-875
               

               
Cow position:
               
chr1:53308527-53308252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
28, 18
               

               
Conread position:
               
591-875
               

               
Cow position:
               
chr1:85550216-85549938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
131, 33
               

               
Conread position:
               
591-875
               

               
Cow position:
               
chr1:98551578-98551861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
120, 35
               

               
Conread position:
               
591-876
               

               
Cow position:
               
chr1:4032487-4032775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
591-885
               

               
Cow position:
               
chr1:89230366-89230080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
139, 33
               

               
Conread position:
               
591-889
               

               
Cow position:
               
chr1:74822317-74822607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
215, 32
               

               
Conread position:
               
591-891
               

               
Cow position:
               
chr1:71305553-71305841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
35, 55
               

               
Conread position:
               
591-894
               

               
Cow position:
               
chr1:52488101-52487820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
30, 76
               

               
Conread position:
               
591-899
               

               
Cow position:
               
chr1:60032737-60032436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
135, 116
               

               
Conread position:
               
591-904
               

               
Cow position:
               
chr1:53458558-53458866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
132, 32
               

               
Conread position:
               
591-913
               

               
Cow position:
               
chr1:96712952-96712630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
29, 122
               

               
Conread position:
               
591-918
               

               
Cow position:
               
chr1:53397853-53398155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
591-921
               

               
Cow position:
               
chr1:3419664-3419992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
35, 53
               

               
Conread position:
               
591-922
               

               
Cow position:
               
chr1:91816908-91816582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
32, 53
               

               
Conread position:
               
591-922
               

               
Cow position:
               
chr1:92963260-92963563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
118, 38
               

               
Conread position:
               
591-925
               

               
Cow position:
               
chr1:2976133-2975800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
170, 115
               

               
Conread position:
               
591-929
               

               
Cow position:
               
chr1:78809742-78810073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
182, 33
               

               
Conread position:
               
591-929
               

               
Cow position:
               
chr1:82884528-82884183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
86, 32
               

               
Conread position:
               
591-929
               

               
Cow position:
               
chr1:102349893-102349566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
110, 167
               

               
Conread position:
               
591-930
               

               
Cow position:
               
chr1:97090189-97090511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
132, 32
               

               
Conread position:
               
591-933
               

               
Cow position:
               
chr1:68619072-68618743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
39, 32
               

               
Conread position:
               
591-935
               

               
Cow position:
               
chr1:93528556-93528893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
36, 116
               

               
Conread position:
               
591-937
               

               
Cow position:
               
chr1:28563707-28563360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 80
               

               
Conread position:
               
591-937
               

               
Cow position:
               
chr1:40192821-40192502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
286, 40
               

               
Conread position:
               
591-937
               

               
Cow position:
               
chr1:45555226-45555566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
591-937
               

               
Cow position:
               
chr1:53520769-53521106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
28, 121
               

               
Conread position:
               
591-937
               

               
Cow position:
               
chr1:57575897-57575563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
591-937
               

               
Cow position:
               
chr1:86057196-86056877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
591-937
               

               
Cow position:
               
chr1:86113549-86113195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
591-937
               

               
Cow position:
               
chr1:99609229-99609568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 116
               

               
Conread position:
               
591-938
               

               
Cow position:
               
chr1:70828765-70829098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
50, 16
               

               
Conread position:
               
591-941
               

               
Cow position:
               
chr1:3923933-3923599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
591-941
               

               
Cow position:
               
chr1:8129105-8128773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
343, 32
               

               
Conread position:
               
591-941
               

               
Cow position:
               
chr1:10655343-10655682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
32, 119
               

               
Conread position:
               
591-941
               

               
Cow position:
               
chr1:21787192-21787529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
56, 33
               

               
Conread position:
               
591-941
               

               
Cow position:
               
chr1:21955511-21955167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
83, 78
               

               
Conread position:
               
591-941
               

               
Cow position:
               
chr1:22192625-22192975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 76
               

               
Conread position:
               
591-941
               

               
Cow position:
               
chr1:31765531-31765165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
591-941
               

               
Cow position:
               
chr1:35554766-35555120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
114, 218
               

               
Conread position:
               
591-941
               

               
Cow position:
               
chr1:37322140-37321805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
83, 32
               

               
Conread position:
               
591-941
               

               
Cow position:
               
chr1:44321739-44321392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
6, 34
               

               
Conread position:
               
591-941
               

               
Cow position:
               
chr1:48580992-48581333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
85, 77
               

               
Conread position:
               
591-941
               

               
Cow position:
               
chr1:51394283-51394623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
99, 33
               

               
Conread position:
               
591-941
               

               
Cow position:
               
chr1:55705388-55705042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
133, 32
               

               
Conread position:
               
591-941
               

               
Cow position:
               
chr1:61391927-61391591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
125, 32
               

               
Conread position:
               
591-941
               

               
Cow position:
               
chr1:68763820-68763479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
139, 33
               

               
Conread position:
               
591-941
               

               
Cow position:
               
chr1:83072305-83072645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 33
               

               
Conread position:
               
591-941
               

               
Cow position:
               
chr1:85867460-85867805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
35, 54
               

               
Conread position:
               
591-941
               

               
Cow position:
               
chr1:86682701-86682363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
61, 32
               

               
Conread position:
               
591-941
               

               
Cow position:
               
chr1:91023606-91023263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 32
               

               
Conread position:
               
591-941
               

               
Cow position:
               
chr1:96365528-96365854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
139, 33
               

               
Conread position:
               
591-941
               

               
Cow position:
               
chr1:101634566-101634904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
112, 32
               

               
Conread position:
               
591-942
               

               
Cow position:
               
chr1:24542720-24542364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
113, 32
               

               
Conread position:
               
591-942
               

               
Cow position:
               
chr1:39225063-39224733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
133, 33
               

               
Conread position:
               
591-942
               

               
Cow position:
               
chr1:87197689-87198034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 32
               

               
Conread position:
               
591-943
               

               
Cow position:
               
chr1:50931114-50930772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
347, 32
               

               
Conread position:
               
591-943
               

               
Cow position:
               
chr1:53369940-53370291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 71
               

               
Conread position:
               
591-945
               

               
Cow position:
               
chr1:38753779-38754126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
28, 117
               

               
Conread position:
               
591-945
               

               
Cow position:
               
chr1:56477454-56477795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
117, 11
               

               
Conread position:
               
591-946
               

               
Cow position:
               
chr1:47886627-47886273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 122
               

               
Conread position:
               
591-946
               

               
Cow position:
               
chr1:76740822-76740462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
35, 122
               

               
Conread position:
               
591-947
               

               
Cow position:
               
chr1:96964182-96964530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
261, 21
               

               
Conread position:
               
591-948
               

               
Cow position:
               
chr1:49317635-49317289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
591-948
               

               
Cow position:
               
chr1:59518782-59519123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 32
               

               
Conread position:
               
591-948
               

               
Cow position:
               
chr1:71227942-71228306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
30, 120
               

               
Conread position:
               
591-949
               

               
Cow position:
               
chr1:18936968-18936624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
591-949
               

               
Cow position:
               
chr1:20950583-20950933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 33
               

               
Conread position:
               
591-949
               

               
Cow position:
               
chr1:21508252-21508608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
29, 60
               

               
Conread position:
               
591-949
               

               
Cow position:
               
chr1:43352795-43352439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 25
               

               
Conread position:
               
591-949
               

               
Cow position:
               
chr1:55429094-55428740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 41
               

               
Conread position:
               
591-949
               

               
Cow position:
               
chr1:63138700-63139057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
35, 107
               

               
Conread position:
               
591-949
               

               
Cow position:
               
chr1:70428580-70428950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
35, 20
               

               
Conread position:
               
591-949
               

               
Cow position:
               
chr1:81228478-81228123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 81
               

               
Conread position:
               
591-949
               

               
Cow position:
               
chr1:85688047-85688398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
26, 53
               

               
Conread position:
               
591-950
               

               
Cow position:
               
chr1:11853824-11853473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 117
               

               
Conread position:
               
591-950
               

               
Cow position:
               
chr1:22728913-22729269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 32
               

               
Conread position:
               
591-950
               

               
Cow position:
               
chr1:24133196-24132849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
591-950
               

               
Cow position:
               
chr1:35162269-35162618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
35, 116
               

               
Conread position:
               
591-950
               

               
Cow position:
               
chr1:73546041-73545694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
29, 24
               

               
Conread position:
               
591-950
               

               
Cow position:
               
chr1:85162682-85162314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
132, 32
               

               
Conread position:
               
591-950
               

               
Cow position:
               
chr1:92997037-92996672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 96
               

               
Conread position:
               
591-950
               

               
Cow position:
               
chr1:100400340-100399994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
35, 116
               

               
Conread position:
               
591-951
               

               
Cow position:
               
chr1:6305003-6304660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
29, 118
               

               
Conread position:
               
591-951
               

               
Cow position:
               
chr1:12222743-12222388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
131, 106
               

               
Conread position:
               
591-951
               

               
Cow position:
               
chr1:16962148-16961778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
89, 79
               

               
Conread position:
               
591-951
               

               
Cow position:
               
chr1:20667880-20667535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
131, 34
               

               
Conread position:
               
591-951
               

               
Cow position:
               
chr1:29935516-29935176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
131, 30
               

               
Conread position:
               
591-951
               

               
Cow position:
               
chr1:31934373-31934719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
591-951
               

               
Cow position:
               
chr1:33207009-33206659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 26
               

               
Conread position:
               
591-951
               

               
Cow position:
               
chr1:41696920-41697269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
320, 32
               

               
Conread position:
               
591-951
               

               
Cow position:
               
chr1:54156876-54156519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 95
               

               
Conread position:
               
591-951
               

               
Cow position:
               
chr1:54199522-54199182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
35, 121
               

               
Conread position:
               
591-951
               

               
Cow position:
               
chr1:69678460-69678108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
86, 28
               

               
Conread position:
               
591-951
               

               
Cow position:
               
chr1:81569169-81568811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 32
               

               
Conread position:
               
591-952
               

               
Cow position:
               
chr1:19970739-19970378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
116, 92
               

               
Conread position:
               
591-955
               

               
Cow position:
               
chr1:29451780-29452145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
35, 57
               

               
Conread position:
               
591-956
               

               
Cow position:
               
chr1:11226380-11226009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
69, 55
               

               
Conread position:
               
591-957
               

               
Cow position:
               
chr1:61005700-61005333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
53, 32
               

               
Conread position:
               
591-958
               

               
Cow position:
               
chr1:7748079-7748438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
35, 108
               

               
Conread position:
               
591-958
               

               
Cow position:
               
chr1:7752245-7752602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
35, 108
               

               
Conread position:
               
591-958
               

               
Cow position:
               
chr1:90864434-90864070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
40, 106
               

               
Conread position:
               
591-959
               

               
Cow position:
               
chr1:6103051-6102676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
139, 125
               

               
Conread position:
               
591-959
               

               
Cow position:
               
chr1:13548125-13547759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
30, 62
               

               
Conread position:
               
591-959
               

               
Cow position:
               
chr1:31806739-31807079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
591-959
               

               
Cow position:
               
chr1:63434944-63434575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 24
               

               
Conread position:
               
591-959
               

               
Cow position:
               
chr1:64804242-64803872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 89
               

               
Conread position:
               
591-959
               

               
Cow position:
               
chr1:70094203-70094561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
147, 111
               

               
Conread position:
               
591-959
               

               
Cow position:
               
chr1:90976225-90975850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 108
               

               
Conread position:
               
591-959
               

               
Cow position:
               
chr1:94226689-94226324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
139, 35
               

               
Conread position:
               
591-959
               

               
Cow position:
               
chr1:96305114-96304751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
82, 26
               

               
Conread position:
               
591-959
               

               
Cow position:
               
chr1:97231819-97232193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
31, 60
               

               
Conread position:
               
591-960
               

               
Cow position:
               
chr1:1877890-1878248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
48, 68
               

               
Conread position:
               
591-960
               

               
Cow position:
               
chr1:40599905-40600249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
115, 32
               

               
Conread position:
               
591-960
               

               
Cow position:
               
chr1:49077481-49077099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
35, 127
               

               
Conread position:
               
591-960
               

               
Cow position:
               
chr1:57880927-57880559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
35, 119
               

               
Conread position:
               
591-960
               

               
Cow position:
               
chr1:78857459-78857104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 32
               

               
Conread position:
               
591-960
               

               
Cow position:
               
chr1:86110869-86110519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
351, 32
               

               
Conread position:
               
592-711
               

               
Cow position:
               
chr1:71045617-71045735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
592-736
               

               
Cow position:
               
chr1:45673571-45673719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
592-753
               

               
Cow position:
               
chr1:56748456-56748621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
592-762
               

               
Cow position:
               
chr1:1403616-1403452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
592-807
               

               
Cow position:
               
chr1:96478555-96478774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
33, 110
               

               
Conread position:
               
592-838
               

               
Cow position:
               
chr1:45289009-45288766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
592-855
               

               
Cow position:
               
chr1:60707269-60707525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
25, 56
               

               
Conread position:
               
592-867
               

               
Cow position:
               
chr1:97778861-97779125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
23, 36
               

               
Conread position:
               
592-879
               

               
Cow position:
               
chr1:24728974-24728694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
34, 53
               

               
Conread position:
               
592-879
               

               
Cow position:
               
chr1:75933135-75933409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
151, 32
               

               
Conread position:
               
592-882
               

               
Cow position:
               
chr1:90868576-90868298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
131, 23
               

               
Conread position:
               
592-900
               

               
Cow position:
               
chr1:7186655-7186954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
31, 80
               

               
Conread position:
               
592-901
               

               
Cow position:
               
chr1:51769950-51770260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
131, 114
               

               
Conread position:
               
592-918
               

               
Cow position:
               
chr1:65905144-65904813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
592-918
               

               
Cow position:
               
chr1:68276273-68276596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
34, 108
               

               
Conread position:
               
592-922
               

               
Cow position:
               
chr1:42968451-42968131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
34, 53
               

               
Conread position:
               
592-927
               

               
Cow position:
               
chr1:6228722-6228390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 103
               

               
Conread position:
               
592-927
               

               
Cow position:
               
chr1:95499629-95499305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
111, 20
               

               
Conread position:
               
592-929
               

               
Cow position:
               
chr1:33409765-33409430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
34, 102
               

               
Conread position:
               
592-932
               

               
Cow position:
               
chr1:19568715-19569051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
130, 23
               

               
Conread position:
               
592-936
               

               
Cow position:
               
chr1:34686057-34686365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
592-940
               

               
Cow position:
               
chr1:27145787-27145440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
129, 32
               

               
Conread position:
               
592-941
               

               
Cow position:
               
chr1:3429649-3429309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
31, 15
               

               
Conread position:
               
592-941
               

               
Cow position:
               
chr1:12978543-12978909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
252, 31
               

               
Conread position:
               
592-941
               

               
Cow position:
               
chr1:37707102-37706764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
19, 32
               

               
Conread position:
               
592-941
               

               
Cow position:
               
chr1:70434866-70435191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
592-941
               

               
Cow position:
               
chr1:71295448-71295099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
9, 34
               

               
Conread position:
               
592-941
               

               
Cow position:
               
chr1:72035063-72034723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 113
               

               
Conread position:
               
592-941
               

               
Cow position:
               
chr1:88913181-88913525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 31
               

               
Conread position:
               
592-948
               

               
Cow position:
               
chr1:29481764-29481415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
35, 108
               

               
Conread position:
               
592-949
               

               
Cow position:
               
chr1:26895963-26895599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
110, 31
               

               
Conread position:
               
592-949
               

               
Cow position:
               
chr1:43505387-43505737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
105, 31
               

               
Conread position:
               
592-949
               

               
Cow position:
               
chr1:52496644-52496981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
34, 91
               

               
Conread position:
               
592-949
               

               
Cow position:
               
chr1:63596193-63595838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
31, 23
               

               
Conread position:
               
592-949
               

               
Cow position:
               
chr1:78091895-78092253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 107
               

               
Conread position:
               
592-949
               

               
Cow position:
               
chr1:79590967-79591317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
34, 105
               

               
Conread position:
               
592-949
               

               
Cow position:
               
chr1:84906205-84905847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
34, 53
               

               
Conread position:
               
592-949
               

               
Cow position:
               
chr1:92580624-92580972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
126, 32
               

               
Conread position:
               
592-950
               

               
Cow position:
               
chr1:45019944-45019589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
111, 32
               

               
Conread position:
               
592-950
               

               
Cow position:
               
chr1:46036097-46035732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
33, 53
               

               
Conread position:
               
592-950
               

               
Cow position:
               
chr1:48105571-48105211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
124, 31
               

               
Conread position:
               
592-950
               

               
Cow position:
               
chr1:86578813-86579191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
78, 34
               

               
Conread position:
               
592-950
               

               
Cow position:
               
chr1:101834687-101835030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
138, 32
               

               
Conread position:
               
592-951
               

               
Cow position:
               
chr1:26178948-26178590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 57
               

               
Conread position:
               
592-955
               

               
Cow position:
               
chr1:33719980-33720327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 87
               

               
Conread position:
               
592-959
               

               
Cow position:
               
chr1:42175587-42175954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 31
               

               
Conread position:
               
592-959
               

               
Cow position:
               
chr1:42256641-42256285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
93, 115
               

               
Conread position:
               
592-959
               

               
Cow position:
               
chr1:70538470-70538828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 31
               

               
Conread position:
               
593-707
               

               
Cow position:
               
chr1:100770887-100770772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
593-736
               

               
Cow position:
               
chr1:98397095-98396957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
132, 30
               

               
Conread position:
               
593-764
               

               
Cow position:
               
chr1:95922515-95922345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
163, 0
               

               
Conread position:
               
593-767
               

               
Cow position:
               
chr1:50679422-50679244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
33, 124
               

               
Conread position:
               
593-795
               

               
Cow position:
               
chr1:60907234-60907439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
30, 117
               

               
Conread position:
               
593-803
               

               
Cow position:
               
chr1:79278583-79278377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
593-831
               

               
Cow position:
               
chr1:53425038-53425275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
97, 110
               

               
Conread position:
               
593-840
               

               
Cow position:
               
chr1:81355842-81355596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
129, 30
               

               
Conread position:
               
593-842
               

               
Cow position:
               
chr1:7350406-7350657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
77, 30
               

               
Conread position:
               
593-873
               

               
Cow position:
               
chr1:48730960-48730693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
133, 14
               

               
Conread position:
               
593-875
               

               
Cow position:
               
chr1:52994891-52995168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
129, 31
               

               
Conread position:
               
593-896
               

               
Cow position:
               
chr1:81613253-81613553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
284, 30
               

               
Conread position:
               
593-903
               

               
Cow position:
               
chr1:635055-635364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
33, 56
               

               
Conread position:
               
593-904
               

               
Cow position:
               
chr1:76019829-76019529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
129, 51
               

               
Conread position:
               
593-914
               

               
Cow position:
               
chr1:13637809-13637487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
50, 30
               

               
Conread position:
               
593-928
               

               
Cow position:
               
chr1:71079092-71078770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
593-930
               

               
Cow position:
               
chr1:88618459-88618801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
131, 80
               

               
Conread position:
               
593-937
               

               
Cow position:
               
chr1:14379671-14379349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
593-937
               

               
Cow position:
               
chr1:62519221-62519567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 171
               

               
Conread position:
               
593-937
               

               
Cow position:
               
chr1:82337917-82337579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
108, 31
               

               
Conread position:
               
593-937
               

               
Cow position:
               
chr1:95557900-95558240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
137, 57
               

               
Conread position:
               
593-937
               

               
Cow position:
               
chr1:101860625-101860286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
92, 30
               

               
Conread position:
               
593-941
               

               
Cow position:
               
chr1:5597334-5597007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
130, 30
               

               
Conread position:
               
593-941
               

               
Cow position:
               
chr1:25383526-25383874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 30
               

               
Conread position:
               
593-941
               

               
Cow position:
               
chr1:54478188-54478521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
119, 31
               

               
Conread position:
               
593-941
               

               
Cow position:
               
chr1:84282938-84283276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
593-948
               

               
Cow position:
               
chr1:101983289-101982938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
30, 104
               

               
Conread position:
               
593-949
               

               
Cow position:
               
chr1:25386914-25387261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
33, 110
               

               
Conread position:
               
593-950
               

               
Cow position:
               
chr1:31608033-31607680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
27, 122
               

               
Conread position:
               
593-950
               

               
Cow position:
               
chr1:47658212-47658562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 34
               

               
Conread position:
               
593-951
               

               
Cow position:
               
chr1:55229848-55230188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 67
               

               
Conread position:
               
593-954
               

               
Cow position:
               
chr1:101713985-101714334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
121, 31
               

               
Conread position:
               
593-955
               

               
Cow position:
               
chr1:22628775-22628435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
153, 92
               

               
Conread position:
               
593-959
               

               
Cow position:
               
chr1:16061157-16060786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
29, 17
               

               
Conread position:
               
593-959
               

               
Cow position:
               
chr1:51445743-51446104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
109, 80
               

               
Conread position:
               
593-959
               

               
Cow position:
               
chr1:53622823-53623173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
137, 79
               

               
Conread position:
               
593-959
               

               
Cow position:
               
chr1:89076769-89076399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
36, 14
               

               
Conread position:
               
593-960
               

               
Cow position:
               
chr1:1956464-1956113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
228, 30
               

               
Conread position:
               
593-960
               

               
Cow position:
               
chr1:46693789-46693426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
26, 65
               

               
Conread position:
               
593-960
               

               
Cow position:
               
chr1:73584539-73584182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
137, 31
               

               
Conread position:
               
593-960
               

               
Cow position:
               
chr1:83082866-83083218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
27, 95
               

               
Conread position:
               
594-710
               

               
Cow position:
               
chr1:604054-604170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
594-831
               

               
Cow position:
               
chr1:81868861-81868631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
136, 29
               

               
Conread position:
               
594-842
               

               
Cow position:
               
chr1:26702343-26702098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
12, 31
               

               
Conread position:
               
594-842
               

               
Cow position:
               
chr1:38401659-38401908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
128, 29
               

               
Conread position:
               
594-842
               

               
Cow position:
               
chr1:91039308-91039065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
28, 55
               

               
Conread position:
               
594-860
               

               
Cow position:
               
chr1:91875043-91874790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
594-893
               

               
Cow position:
               
chr1:86073459-86073750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
128, 91
               

               
Conread position:
               
594-894
               

               
Cow position:
               
chr1:60281235-60281532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
108, 30
               

               
Conread position:
               
594-903
               

               
Cow position:
               
chr1:19885253-19885550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
594-921
               

               
Cow position:
               
chr1:648188-648513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
112, 101
               

               
Conread position:
               
594-935
               

               
Cow position:
               
chr1:70297142-70297486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
31, 51
               

               
Conread position:
               
594-941
               

               
Cow position:
               
chr1:64302383-64302045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
128, 29
               

               
Conread position:
               
594-941
               

               
Cow position:
               
chr1:100551833-100552171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
174, 115
               

               
Conread position:
               
594-949
               

               
Cow position:
               
chr1:11772212-11771870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
32, 81
               

               
Conread position:
               
594-949
               

               
Cow position:
               
chr1:42398332-42397983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 114
               

               
Conread position:
               
594-949
               

               
Cow position:
               
chr1:68217494-68217153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
122, 33
               

               
Conread position:
               
594-951
               

               
Cow position:
               
chr1:54258428-54258786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 72
               

               
Conread position:
               
595-767
               

               
Cow position:
               
chr1:81470998-81471167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
121, 28
               

               
Conread position:
               
595-941
               

               
Cow position:
               
chr1:78810905-78811243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
259, 28
               

               
Conread position:
               
595-945
               

               
Cow position:
               
chr1:62964144-62964478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
347, 28
               

               
Conread position:
               
595-949
               

               
Cow position:
               
chr1:43358149-43357790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
31, 101
               

               
Conread position:
               
595-951
               

               
Cow position:
               
chr1:21577670-21578026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
15, 104
               

               
Conread position:
               
596-696
               

               
Cow position:
               
chr1:97806655-97806754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
101
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
596-707
               

               
Cow position:
               
chr1:9534038-9534149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
596-810
               

               
Cow position:
               
chr1:101946843-101946637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
596-842
               

               
Cow position:
               
chr1:89349829-89350074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
126, 27
               

               
Conread position:
               
596-844
               

               
Cow position:
               
chr1:44125780-44125526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
105, 27
               

               
Conread position:
               
596-848
               

               
Cow position:
               
chr1:84240759-84240995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
204, 28
               

               
Conread position:
               
596-855
               

               
Cow position:
               
chr1:98594434-98594687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
23, 63
               

               
Conread position:
               
596-927
               

               
Cow position:
               
chr1:79660533-79660210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
127, 21
               

               
Conread position:
               
596-929
               

               
Cow position:
               
chr1:6077765-6078093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
78, 27
               

               
Conread position:
               
596-935
               

               
Cow position:
               
chr1:34856770-34856425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 115
               

               
Conread position:
               
596-955
               

               
Cow position:
               
chr1:78838665-78839006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
597-885
               

               
Cow position:
               
chr1:89342127-89341832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
117, 26
               

               
Conread position:
               
597-941
               

               
Cow position:
               
chr1:92197332-92197659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
133, 26
               

               
Conread position:
               
597-951
               

               
Cow position:
               
chr1:5479819-5479443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
22, 295
               

               
Conread position:
               
597-951
               

               
Cow position:
               
chr1:35600429-35600075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
104, 5
               

               
Conread position:
               
597-960
               

               
Cow position:
               
chr1:5010972-5010607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
23, 124
               

               
Conread position:
               
597-960
               

               
Cow position:
               
chr1:101715219-101714858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
29, 95
               

               
Conread position:
               
598-921
               

               
Cow position:
               
chr1:99642497-99642184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
124, 26
               

               
Conread position:
               
598-940
               

               
Cow position:
               
chr1:79640421-79640085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 24
               

               
Conread position:
               
598-941
               

               
Cow position:
               
chr1:26934392-26934063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
274, 26
               

               
Conread position:
               
598-941
               

               
Cow position:
               
chr1:78079596-78079928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
14, 28
               

               
Conread position:
               
598-945
               

               
Cow position:
               
chr1:95662465-95662795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
28, 48
               

               
Conread position:
               
598-951
               

               
Cow position:
               
chr1:71399148-71399510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
13, 57
               

               
Conread position:
               
599-928
               

               
Cow position:
               
chr1:89381144-89381466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
600-848
               

               
Cow position:
               
chr1:93810300-93810544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
71, 24
               

               
Conread position:
               
600-960
               

               
Cow position:
               
chr1:68710136-68710508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
9, 111
               

               
Conread position:
               
601-941
               

               
Cow position:
               
chr1:11172246-11172573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
601-948
               

               
Cow position:
               
chr1:66898626-66898282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 71
               

               
Conread position:
               
601-958
               

               
Cow position:
               
chr1:36880150-36880509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
132, 90
               

               
Conread position:
               
602-870
               

               
Cow position:
               
chr1:100569024-100569293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
24, 109
               

               
Conread position:
               
602-928
               

               
Cow position:
               
chr1:101280843-101280545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
602-930
               

               
Cow position:
               
chr1:95637702-95638029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
18, 62
               

               
Conread position:
               
602-945
               

               
Cow position:
               
chr1:41181718-41182045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
122, 24
               

               
Conread position:
               
602-948
               

               
Cow position:
               
chr1:42869063-42868738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
24, 37
               

               
Conread position:
               
602-959
               

               
Cow position:
               
chr1:72105286-72105622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
603-847
               

               
Cow position:
               
chr1:52052844-52052603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
119, 8
               

               
Conread position:
               
603-860
               

               
Cow position:
               
chr1:78697898-78697645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
16, 49
               

               
Conread position:
               
603-949
               

               
Cow position:
               
chr1:87072572-87072907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
99, 10
               

               
Conread position:
               
604-838
               

               
Cow position:
               
chr1:2737075-2737305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
604-927
               

               
Cow position:
               
chr1:98453460-98453786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
151, 102
               

               
Conread position:
               
604-944
               

               
Cow position:
               
chr1:4701798-4701463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
141, 118
               

               
Conread position:
               
604-949
               

               
Cow position:
               
chr1:84104177-84103845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
54, 7
               

               
Conread position:
               
604-951
               

               
Cow position:
               
chr1:77425739-77425398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
10, 103
               

               
Conread position:
               
604-951
               

               
Cow position:
               
chr1:97820564-97820899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
126, 24
               

               
Conread position:
               
604-954
               

               
Cow position:
               
chr1:5858813-5858454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
151, 118
               

               
Conread position:
               
604-957
               

               
Cow position:
               
chr1:70422179-70422522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
605-821
               

               
Cow position:
               
chr1:92433876-92434088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
605-941
               

               
Cow position:
               
chr1:20104144-20104471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
118, 19
               

               
Conread position:
               
607-756
               

               
Cow position:
               
chr1:79631879-79631733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
101, 0
               
607-932UCSC Genome Browser

               
Conread position:
               

               

               
Cow position:
               
chr1:43389172-43388858 (view  custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 0
               
607-940UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:
chr1:43311898-43311563 (view  custom track)

               
               
               
Alignm length:
340

               
               
               
Alignm identity:
225

               
               
               
Alignm E-value:
4e-34

               
               
               
Alignm gaps (pig, cow):
106, 17
607-941UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:
chr1:38278160-38277821 (view  custom track)

               
               
               
Alignm length:
342

               
               
               
Alignm identity:
240

               
               
               
Alignm E-value:
0

               
               
               
Alignm gaps (pig, cow):
22, 91

               
               
               Conread position:607-944
               
               
               Cow position:chr1:71666064-71665726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:241
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):13, 85

               
               
               Conread position:607-949
               
               
               Cow position:chr1:47790786-47790455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:238
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):22, 33

               
               
               Conread position:608-927
               
               
               Cow position:chr1:17196751-17196434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:220
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):117, 15

               
               
               Conread position:608-959
               
               
               Cow position:chr1:5423858-5423508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):150, 16

               
               
               Conread position:609-860
               
               
               Cow position:chr1:3790186-3789943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):113, 14

               
               
               Conread position:609-935
               
               
               Cow position:chr1:72813492-72813817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 111

               
               
               Conread position:611-955
               
               
               Cow position:chr1:42482084-42482420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 79

               
               
               Conread position:612-791
               
               
               Cow position:chr1:36276375-36276551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):19, 66

               
               
               Conread position:612-941
               
               
               Cow position:chr1:261596-261259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):94, 11

               
               
               Conread position:612-951
               
               
               Cow position:chr1:77986540-77986201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):118, 89

               
               
               Conread position:613-929
               
               
               Cow position:chr1:47288123-47288437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):117, 93

               
               
               Conread position:613-935
               
               
               Cow position:chr1:6826405-6826093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):241, 11

               
               
               Conread position:613-937
               
               
               Cow position:chr1:58754911-58754597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):111, 10

               
               
               Conread position:613-937
               
               
               Cow position:chr1:67585429-67585752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):14, 206

               
               
               Conread position:614-959
               
               
               Cow position:chr1:74751753-74751406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:234
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):37, 50

               
               
               Conread position:615-813
               
               
               Cow position:chr1:55818945-55819131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):16, 56

               
               
               Conread position:615-933
               
               
               Cow position:chr1:98511813-98512134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):241, 99

               
               
               Conread position:615-959
               
               
               Cow position:chr1:91651474-91651125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:233
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):127, 9

               
               
               Conread position:616-875
               
               
               Cow position:chr1:45553358-45553103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):99, 86

               
               
               Conread position:616-941
               
               
               Cow position:chr1:78794339-78794031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:617-808
               
               
               Cow position:chr1:45285546-45285738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):99, 10

               
               
               Conread position:617-847
               
               
               Cow position:chr1:61543031-61542805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):105, 85

               
               
               Conread position:617-930
               
               
               Cow position:chr1:49082628-49082940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:218
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):105, 14

               
               
               Conread position:618-842
               
               
               Cow position:chr1:87936787-87937006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:618-853
               
               
               Cow position:chr1:3352806-3352580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:618-875
               
               
               Cow position:chr1:89835136-89835393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):11, 78

               
               
               Conread position:618-881
               
               
               Cow position:chr1:80422168-80422418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:184
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:618-889
               
               
               Cow position:chr1:32001433-32001169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:193
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):74, 155

               
               
               Conread position:618-903
               
               
               Cow position:chr1:95296722-95296437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):140, 98

               
               
               Conread position:618-923
               
               
               Cow position:chr1:1499803-1499503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:618-941
               
               
               Cow position:chr1:69695104-69694802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):98, 88

               
               
               Conread position:618-951
               
               
               Cow position:chr1:48605922-48606249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:618-955
               
               
               Cow position:chr1:25734756-25735086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:231
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):78, 87

               
               
               Conread position:618-958
               
               
               Cow position:chr1:5876572-5876242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):52, 10

               
               
               Conread position:619-937
               
               
               Cow position:chr1:41138243-41137947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:619-941
               
               
               Cow position:chr1:56618762-56618451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:225
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:619-951
               
               
               Cow position:chr1:10716391-10716720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:227
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):94, 47

               
               
               Conread position:619-955
               
               
               Cow position:chr1:98059938-98060279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):33, 24

               
               
               Conread position:619-957
               
               
               Cow position:chr1:65028418-65028742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):35, 72

               
               
               Conread position:619-959
               
               
               Cow position:chr1:22944137-22943807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):105, 90

               
               
               Conread position:619-959
               
               
               Cow position:chr1:81477980-81477636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):58, 10

               
               
               Conread position:619-960
               
               
               Cow position:chr1:23999032-23998698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:235
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):91, 27

               
               
               Conread position:620-848
               
               
               Cow position:chr1:43822290-43822514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):113, 88

               
               
               Conread position:620-867
               
               
               Cow position:chr1:92989479-92989724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):102, 88

               
               
               Conread position:620-875
               
               
               Cow position:chr1:81580066-81580319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):90, 6

               
               
               Conread position:620-940
               
               
               Cow position:chr1:43855191-43855493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:620-949
               
               
               Cow position:chr1:96019119-96019441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):44, 79

               
               
               Conread position:621-941
               
               
               Cow position:chr1:8374561-8374248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):109, 21

               
               
               Conread position:622-853
               
               
               Cow position:chr1:6972421-6972646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:622-959
               
               
               Cow position:chr1:82880536-82880852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):108, 92

               
               
               Conread position:623-941
               
               
               Cow position:chr1:49825177-49824860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):80, 92

               
               
               Conread position:623-956
               
               
               Cow position:chr1:77232674-77232352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):234, 7

               
               
               Conread position:624-904
               
               
               Cow position:chr1:1964636-1964911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):37, 79

               
               
               Conread position:624-949
               
               
               Cow position:chr1:10616774-10617104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):98, 82

               
               
               Conread position:624-949
               
               
               Cow position:chr1:22823800-22824122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 5

               
               
               Conread position:624-958
               
               
               Cow position:chr1:77424996-77425336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):224, 82

               
               
               Conread position:625-959
               
               
               Cow position:chr1:28059072-28058742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):105, 39

               
               
               Conread position:626-948
               
               
               Cow position:chr1:4391387-4391056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:626-950
               
               
               Cow position:chr1:88397944-88397628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):96, 45

               
               
               Conread position:627-949
               
               
               Cow position:chr1:72841230-72841553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):234, 12

               
               
               Conread position:628-945
               
               
               Cow position:chr1:635787-635475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):153, 94

               
               
               Conread position:628-945
               
               
               Cow position:chr1:71350825-71350515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:629-955
               
               
               Cow position:chr1:98583662-98583968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):75, 18

               
               
               Conread position:629-959
               
               
               Cow position:chr1:46030858-46031185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:226
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):311, 68

               
               
               Conread position:630-941
               
               
               Cow position:chr1:82513456-82513147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):93, 67

               
               
               Conread position:631-937
               
               
               Cow position:chr1:39427101-39426816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:631-941
               
               
               Cow position:chr1:22730646-22730938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:631-950
               
               
               Cow position:chr1:60856217-60856535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):75, 63

               
               
               Conread position:631-960
               
               
               Cow position:chr1:75250013-75250336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:229
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):78, 19

               
               
               Conread position:632-949
               
               
               Cow position:chr1:65103521-65103842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:237
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):70, 51

               
               
               Conread position:632-956
               
               
               Cow position:chr1:37726513-37726195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):201, 23

               
               
               Conread position:632-959
               
               
               Cow position:chr1:102306243-102305924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:230
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):7, 84

               
               
               Conread position:633-941
               
               
               Cow position:chr1:30189049-30189362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):66, 78

               
               
               Conread position:636-941
               
               
               Cow position:chr1:627867-628173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:225
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):38, 33

               
               
               Conread position:637-929
               
               
               Cow position:chr1:45223487-45223769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):93, 13

               
               
               Conread position:637-959
               
               
               Cow position:chr1:90904847-90904533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:213
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):40, 32

               
               
               Conread position:638-816
               
               
               Cow position:chr1:55089145-55088972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:640-935
               
               
               Cow position:chr1:53327838-53327551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):90, 43

               
               
               Conread position:644-848
               
               
               Cow position:chr1:46764784-46764990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):8, 69

               
               
               Conread position:648-951
               
               
               Cow position:chr1:53402699-53402999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):51, 81

               
               
               Conread position:650-875
               
               
               Cow position:chr1:95153139-95153364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):46, 60

               
               
               Conread position:650-941
               
               
               Cow position:chr1:69227530-69227244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):58, 108

               
               
               Conread position:650-945
               
               
               Cow position:chr1:96558915-96558636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):287, 47

               
               
               Conread position:650-949
               
               
               Cow position:chr1:38418947-38419240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):7, 25

               
               
               Conread position:650-959
               
               
               Cow position:chr1:851522-851198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):27, 19

               
               
               Conread position:650-960
               
               
               Cow position:chr1:21954312-21954004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):76, 52

               
               
               Conread position:650-960
               
               
               Cow position:chr1:73458174-73457871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):80, 47

               
               
               Conread position:651-921
               
               
               Cow position:chr1:33913741-33914016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):73, 55

               
               
               Conread position:651-924
               
               
               Cow position:chr1:5128364-5128643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):49, 155

               
               
               Conread position:651-939
               
               
               Cow position:chr1:100474152-100474442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):71, 47

               
               
               Conread position:651-941
               
               
               Cow position:chr1:48214241-48213940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):46, 67

               
               
               Conread position:652-955
               
               
               Cow position:chr1:61846067-61846380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):197, 44

               
               
               Conread position:653-875
               
               
               Cow position:chr1:8347046-8347265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:653-941
               
               
               Cow position:chr1:89388260-89388548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):70, 49

               
               
               Conread position:653-951
               
               
               Cow position:chr1:78096847-78097140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):72, 49

               
               
               Conread position:654-874
               
               
               Cow position:chr1:98575969-98576186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:654-875
               
               
               Cow position:chr1:68672676-68672460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):41, 63

               
               
               Conread position:654-935
               
               
               Cow position:chr1:39681919-39682198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):73, 49

               
               
               Conread position:654-942
               
               
               Cow position:chr1:100576116-100575835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):47, 120

               
               
               Conread position:654-950
               
               
               Cow position:chr1:60986911-60987204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):76, 9

               
               
               Conread position:654-959
               
               
               Cow position:chr1:29474424-29474130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:655-951
               
               
               Cow position:chr1:35671466-35671752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):19, 48

               
               
               Conread position:657-959
               
               
               Cow position:chr1:49753406-49753707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):24, 9

               
               
               Conread position:658-959
               
               
               Cow position:chr1:89158202-89157906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):54, 44

               
               
               Conread position:658-960
               
               
               Cow position:chr1:6394486-6394782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):72, 38

               
               
               Conread position:659-941
               
               
               Cow position:chr1:92684763-92684476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):71, 42

               
               
               Conread position:659-951
               
               
               Cow position:chr1:186348-186066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):71, 54

               
               
               Conread position:659-954
               
               
               Cow position:chr1:30983562-30983277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):171, 48

               
               
               Conread position:660-929
               
               
               Cow position:chr1:2971840-2972113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):40, 51

               
               
               Conread position:662-939
               
               
               Cow position:chr1:19515683-19515414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):68, 35

               
               
               Conread position:663-951
               
               
               Cow position:chr1:52139700-52139412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):81, 39

               
               
               Conread position:664-959
               
               
               Cow position:chr1:6589974-6590261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):204, 44

               
               
               Conread position:665-933
               
               
               Cow position:chr1:95072264-95072540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):58, 32

               
               
               Conread position:665-941
               
               
               Cow position:chr1:54267999-54267733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):58, 25

               
               
               Conread position:666-930
               
               
               Cow position:chr1:71770383-71770112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:666-949
               
               
               Cow position:chr1:51609309-51609591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):239, 0

               
               
               Conread position:667-959
               
               
               Cow position:chr1:81390853-81391149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):40, 122

               
               
               Conread position:671-955
               
               
               Cow position:chr1:1496592-1496306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):27, 45

               
               
               Conread position:672-945
               
               
               Cow position:chr1:22035550-22035817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):14, 41

               
               
               Conread position:673-935
               
               
               Cow position:chr1:79003916-79004175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):50, 36

               
               
               Conread position:673-940
               
               
               Cow position:chr1:80584373-80584632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:673-941
               
               
               Cow position:chr1:78066596-78066338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):32, 24

               
               
               Conread position:673-941
               
               
               Cow position:chr1:88359823-88360090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):190, 29

               
               
               Conread position:673-949
               
               
               Cow position:chr1:6287090-6287363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):44, 23

               
               
               Conread position:673-949
               
               
               Cow position:chr1:30862469-30862200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):57, 28

               
               
               Conread position:673-951
               
               
               Cow position:chr1:79718743-79719023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):31, 72

               
               
               Conread position:673-951
               
               
               Cow position:chr1:101507300-101507566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):13, 37

               
               
               Conread position:673-955
               
               
               Cow position:chr1:77739658-77739943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):19, 168

               
               
               Conread position:674-941
               
               
               Cow position:chr1:30035156-30035429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):30, 41

               
               
               Conread position:674-959
               
               
               Cow position:chr1:31357568-31357294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):28, 43

               
               
               Conread position:675-948
               
               
               Cow position:chr1:31819052-31819316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):8, 15

               
               
               Conread position:675-960
               
               
               Cow position:chr1:81481440-81481165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:210
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):24, 34

               
               
               Conread position:676-951
               
               
               Cow position:chr1:46143517-46143254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):46, 26

               
               
               Conread position:676-959
               
               
               Cow position:chr1:50432542-50432258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):48, 33

               
               
               Conread position:676-959
               
               
               Cow position:chr1:52662229-52661951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):55, 26

               
               
               Conread position:676-960
               
               
               Cow position:chr1:37695964-37695676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:195
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):21, 35

               
               
               Conread position:677-929
               
               
               Cow position:chr1:97717630-97717383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):29, 134

               
               
               Conread position:679-939
               
               
               Cow position:chr1:57089735-57089476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):38, 144

               
               
               Conread position:679-955
               
               
               Cow position:chr1:500121-500396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):43, 27

               
               
               Conread position:680-948
               
               
               Cow position:chr1:100753478-100753744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):50, 17

               
               
               Conread position:680-950
               
               
               Cow position:chr1:17055942-17056206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):11, 31

               
               
               Conread position:681-945
               
               
               Cow position:chr1:52912948-52912683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:184
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):25, 36

               
               
               Conread position:682-941
               
               
               Cow position:chr1:53603705-53603964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):36, 20

               
               
               Conread position:684-941
               
               
               Cow position:chr1:60490456-60490712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):46, 22

               
               
               Conread position:684-949
               
               
               Cow position:chr1:73020709-73020449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):38, 10

               
               
               Conread position:684-951
               
               
               Cow position:chr1:60044939-60045202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):48, 31

               
               
               Conread position:686-937
               
               
               Cow position:chr1:95835848-95835594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:687-951
               
               
               Cow position:chr1:71790193-71789933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):37, 22

               
               
               Conread position:688-940
               
               
               Cow position:chr1:13157144-13157398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):70, 17

               
               
               Conread position:691-941
               
               
               Cow position:chr1:82537895-82538132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):118, 19

               
               
               Conread position:694-950
               
               
               Cow position:chr1:75247727-75247982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):23, 12

               
               
               Conread position:694-959
               
               
               Cow position:chr1:72422446-72422184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):74, 28

               
               
               Conread position:697-941
               
               
               Cow position:chr1:89158736-89158503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):25, 13

               
               
               Conread position:700-950
               
               
               Cow position:chr1:102468650-102468408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):68, 76

               
               
               Conread position:702-950
               
               
               Cow position:chr1:76037548-76037298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):15, 7

               
               
               Conread position:702-957
               
               
               Cow position:chr1:3965804-3966050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):28, 69

               
               
               Conread position:703-941
               
               
               Cow position:chr1:102529890-102529648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):10, 93

               
               
               Conread position:703-950
               
               
               Cow position:chr1:81515202-81515453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:705-949
               
               
               Cow position:chr1:68688162-68688407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:705-960
               
               
               Cow position:chr1:36688405-36688156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:708-959
               
               
               Cow position:chr1:38706879-38706630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):22, 6

               
               
               Conread position:709-921
               
               
               Cow position:chr1:6031600-6031810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):196, 0

               
               
               Conread position:709-929
               
               
               Cow position:chr1:62034851-62034642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:709-941
               
               
               Cow position:chr1:8287656-8287425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):7, 114

               
               
               Conread position:709-948
               
               
               Cow position:chr1:36079799-36080039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:709-949
               
               
               Cow position:chr1:852145-852386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:709-955
               
               
               Cow position:chr1:4582526-4582769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):21, 77

               
               
               Conread position:709-958
               
               
               Cow position:chr1:21560987-21561242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):23, 66

               
               
               Conread position:709-959
               
               
               Cow position:chr1:91649442-91649192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):21, 81

               
               
               Conread position:710-935
               
               
               Cow position:chr1:52618806-52619030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):179, 184

               
               
               Conread position:710-937
               
               
               Cow position:chr1:41027051-41027273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):13, 68

               
               
               Conread position:710-937
               
               
               Cow position:chr1:73721336-73721565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):20, 134

               
               
               Conread position:710-938
               
               
               Cow position:chr1:8271878-8271650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):21, 197

               
               
               Conread position:710-941
               
               
               Cow position:chr1:27959574-27959342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):13, 68

               
               
               Conread position:710-948
               
               
               Cow position:chr1:72092647-72092411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):14, 150

               
               
               Conread position:710-949
               
               
               Cow position:chr1:150949-150711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):20, 142

               
               
               Conread position:710-949
               
               
               Cow position:chr1:44611730-44611491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:710-949
               
               
               Cow position:chr1:75411862-75411623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):20, 5

               
               
               Conread position:710-951
               
               
               Cow position:chr1:67529031-67529271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):21, 170

               
               
               Conread position:710-955
               
               
               Cow position:chr1:6731157-6731398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:179
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):147, 0

               
               
               Conread position:711-942
               
               
               Cow position:chr1:91861323-91861091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):6, 12

               
               
               Conread position:711-948
               
               
               Cow position:chr1:68961305-68961539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):19, 46

               
               
               Conread position:711-950
               
               
               Cow position:chr1:95618620-95618855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):19, 5

               
               
               Conread position:711-950
               
               
               Cow position:chr1:98911985-98912221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):12, 59

               
               
               Conread position:711-959
               
               
               Cow position:chr1:15206895-15206651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):11, 91

               
               
               Conread position:712-937
               
               
               Cow position:chr1:49980688-49980909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):18, 77

               
               
               Conread position:712-949
               
               
               Cow position:chr1:49334414-49334179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):10, 50

               
               
               Conread position:712-951
               
               
               Cow position:chr1:100852687-100852918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):6, 145

               
               
               Conread position:713-941
               
               
               Cow position:chr1:2317398-2317151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):52, 33

               
               
               Conread position:713-959
               
               
               Cow position:chr1:24530481-24530716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):11, 30

               
               
               Conread position:713-960
               
               
               Cow position:chr1:20871580-20871333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):11, 231

               
               
               Conread position:714-941
               
               
               Cow position:chr1:55753235-55753014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):9, 37

               
               
               Conread position:714-949
               
               
               Cow position:chr1:83025184-83024954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):10, 140

               
               
               Conread position:714-959
               
               
               Cow position:chr1:98897714-98897468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):13, 60

               
               
               Conread position:715-945
               
               
               Cow position:chr1:81858921-81858692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):15, 138

               
               
               Conread position:715-949
               
               
               Cow position:chr1:79846270-79846034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):7, 111

               
               
               Conread position:715-951
               
               
               Cow position:chr1:81364243-81364479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):183, 23

               
               
               Conread position:716-941
               
               
               Cow position:chr1:37918207-37917974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):8, 201

               
               
               Conread position:716-944
               
               
               Cow position:chr1:14006098-14006333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:716-945
               
               
               Cow position:chr1:57087824-57088060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):14, 103

               
               
               Conread position:721-937
               
               
               Cow position:chr1:759430-759211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):42, 55

               
               
               Conread position:721-941
               
               
               Cow position:chr1:45315648-45315426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:722-935
               
               
               Cow position:chr1:69940834-69940626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:722-951
               
               
               Cow position:chr1:90267710-90267939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):132, 26

               
               
               Conread position:722-955
               
               
               Cow position:chr1:5751302-5751534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):158, 0

               
               
               Conread position:724-937
               
               
               Cow position:chr1:101439491-101439288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):70, 51

               
               
               Conread position:724-950
               
               
               Cow position:chr1:22461247-22461024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):210, 132

               
               
               Conread position:724-950
               
               
               Cow position:chr1:73719452-73719685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:724-956
               
               
               Cow position:chr1:6790766-6790994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:724-957
               
               
               Cow position:chr1:33846578-33846349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:724-960
               
               
               Cow position:chr1:14567644-14567418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:725-949
               
               
               Cow position:chr1:87083621-87083841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):103, 97

               
               
               Conread position:725-959
               
               
               Cow position:chr1:802323-802089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):109, 100

               
               
               Conread position:726-955
               
               
               Cow position:chr1:97540628-97540858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:727-952
               
               
               Cow position:chr1:48618250-48618031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:729-930
               
               
               Cow position:chr1:54694616-54694818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):40, 96

               
               
               Conread position:729-937
               
               
               Cow position:chr1:6381768-6381977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):146, 86

               
               
               Conread position:729-940
               
               
               Cow position:chr1:73551514-73551298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:729-949
               
               
               Cow position:chr1:9637025-9637243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:729-950
               
               
               Cow position:chr1:29329537-29329761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:730-949
               
               
               Cow position:chr1:54558336-54558117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):210, 116

               
               
               Conread position:731-941
               
               
               Cow position:chr1:76518420-76518629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):201, 0

               
               
               Conread position:731-945
               
               
               Cow position:chr1:99605189-99604983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:732-944
               
               
               Cow position:chr1:92792051-92792260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):128, 25

               
               
               Conread position:732-959
               
               
               Cow position:chr1:95152870-95153097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:733-937
               
               
               Cow position:chr1:100573627-100573427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:733-951
               
               
               Cow position:chr1:56913529-56913317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:734-935
               
               
               Cow position:chr1:69691714-69691512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):197, 0

               
               
               Conread position:735-949
               
               
               Cow position:chr1:82336680-82336884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:736-960
               
               
               Cow position:chr1:15875663-15875883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:738-949
               
               
               Cow position:chr1:25022070-25021865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:740-939
               
               
               Cow position:chr1:71946077-71945877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):126, 168

               
               
               Conread position:740-940
               
               
               Cow position:chr1:60603570-60603366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:741-922
               
               
               Cow position:chr1:31630279-31630097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):127, 170

               
               
               Conread position:741-938
               
               
               Cow position:chr1:96201308-96201113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:741-950
               
               
               Cow position:chr1:31231734-31231526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):170, 0

               
               
               Conread position:742-941
               
               
               Cow position:chr1:73534632-73534437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:742-949
               
               
               Cow position:chr1:84782742-84782535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:742-951
               
               
               Cow position:chr1:31340762-31340552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):176, 0

               
               
               Conread position:742-955
               
               
               Cow position:chr1:89298101-89297885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):174, 70

               
               
               Conread position:742-955
               
               
               Cow position:chr1:89301710-89301494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):174, 70

               
               
               Conread position:742-960
               
               
               Cow position:chr1:3679509-3679303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):157, 41

               
               
               Conread position:745-937
               
               
               Cow position:chr1:95049854-95049664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):23, 38

               
               
               Conread position:745-941
               
               
               Cow position:chr1:63460890-63461083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:745-946
               
               
               Cow position:chr1:524820-525016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:745-952
               
               
               Cow position:chr1:55685966-55685760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):127, 107

               
               
               Conread position:745-960
               
               
               Cow position:chr1:93590574-93590367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):194, 112

               
               
               Conread position:747-929
               
               
               Cow position:chr1:81668803-81668619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):113, 101

               
               
               Conread position:747-941
               
               
               Cow position:chr1:96518707-96518907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:747-948
               
               
               Cow position:chr1:40303565-40303759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):17, 25

               
               
               Conread position:747-956
               
               
               Cow position:chr1:43148531-43148318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):21, 29

               
               
               Conread position:748-929
               
               
               Cow position:chr1:40181610-40181428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:748-941
               
               
               Cow position:chr1:81638563-81638744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:748-949
               
               
               Cow position:chr1:69346964-69346763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:748-951
               
               
               Cow position:chr1:95703820-95704020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):102, 52

               
               
               Conread position:750-941
               
               
               Cow position:chr1:102730745-102730550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:756-937
               
               
               Cow position:chr1:20125815-20125996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):113, 44

               
               
               Conread position:757-929
               
               
               Cow position:chr1:61134436-61134608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:757-932
               
               
               Cow position:chr1:23633906-23633731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:757-941
               
               
               Cow position:chr1:32217266-32217443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:757-945
               
               
               Cow position:chr1:71636299-71636119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):128, 73

               
               
               Conread position:757-948
               
               
               Cow position:chr1:46245716-46245524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):138, 53

               
               
               Conread position:757-959
               
               
               Cow position:chr1:11708994-11708802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:758-940
               
               
               Cow position:chr1:102523616-102523436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:758-959
               
               
               Cow position:chr1:69378574-69378370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):170, 79

               
               
               Conread position:758-960
               
               
               Cow position:chr1:62469086-62469284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):181, 25

               
               
               Conread position:760-951
               
               
               Cow position:chr1:52384935-52385128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):96, 119

               
               
               Conread position:761-944
               
               
               Cow position:chr1:41953975-41953791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:772-951
               
               
               Cow position:chr1:77685942-77685763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:773-927
               
               
               Cow position:chr1:1802207-1802361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:773-927
               
               
               Cow position:chr1:23372899-23373052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:773-936
               
               
               Cow position:chr1:32014236-32014391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:773-937
               
               
               Cow position:chr1:64458005-64458173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:773-941
               
               
               Cow position:chr1:102423833-102424000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:773-948
               
               
               Cow position:chr1:69442478-69442302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):166, 0

               
               
               Conread position:773-949
               
               
               Cow position:chr1:3666991-3666820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:773-949
               
               
               Cow position:chr1:42796917-42797089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:773-949
               
               
               Cow position:chr1:43296679-43296503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):103, 160

               
               
               Conread position:773-949
               
               
               Cow position:chr1:54569738-54569914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:773-950
               
               
               Cow position:chr1:94823352-94823175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:773-951
               
               
               Cow position:chr1:39684104-39683925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):94, 42

               
               
               Conread position:773-957
               
               
               Cow position:chr1:731933-731748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):87, 135

               
               
               Conread position:773-957
               
               
               Cow position:chr1:60403806-60403993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):171, 0

               
               
               Conread position:773-960
               
               
               Cow position:chr1:22231688-22231874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):170, 0

               
               
               Conread position:774-919
               
               
               Cow position:chr1:81471396-81471534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:774-930
               
               
               Cow position:chr1:78782016-78782180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:774-935
               
               
               Cow position:chr1:68730042-68730203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):89, 9

               
               
               Conread position:774-939
               
               
               Cow position:chr1:70416719-70416557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:774-940
               
               
               Cow position:chr1:19384415-19384253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:774-941
               
               
               Cow position:chr1:5872738-5872569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:774-941
               
               
               Cow position:chr1:41022460-41022621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:774-941
               
               
               Cow position:chr1:42774951-42775111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:774-941
               
               
               Cow position:chr1:71664856-71664689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:774-941
               
               
               Cow position:chr1:79178669-79178836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:774-941
               
               
               Cow position:chr1:98557078-98556913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:774-943
               
               
               Cow position:chr1:10470467-10470629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:774-948
               
               
               Cow position:chr1:4294385-4294557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:774-948
               
               
               Cow position:chr1:84594929-84595102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):169, 0

               
               
               Conread position:774-949
               
               
               Cow position:chr1:1380038-1380214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):87, 76

               
               
               Conread position:774-949
               
               
               Cow position:chr1:20537246-20537415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:774-949
               
               
               Cow position:chr1:94713124-94712950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:774-950
               
               
               Cow position:chr1:53456852-53457026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):136, 21

               
               
               Conread position:774-951
               
               
               Cow position:chr1:22828529-22828357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):166, 90

               
               
               Conread position:774-951
               
               
               Cow position:chr1:70483293-70483120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):72, 79

               
               
               Conread position:774-951
               
               
               Cow position:chr1:77810718-77810546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):58, 72

               
               
               Conread position:774-951
               
               
               Cow position:chr1:79170112-79169937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):167, 132

               
               
               Conread position:774-959
               
               
               Cow position:chr1:69411656-69411470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):166, 124

               
               
               Conread position:775-930
               
               
               Cow position:chr1:78034862-78034711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:775-938
               
               
               Cow position:chr1:84815172-84815336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):69, 158

               
               
               Conread position:775-939
               
               
               Cow position:chr1:78029990-78029823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:775-940
               
               
               Cow position:chr1:51860519-51860360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:775-941
               
               
               Cow position:chr1:7965888-7966052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:775-941
               
               
               Cow position:chr1:19599319-19599155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:775-941
               
               
               Cow position:chr1:30028190-30028027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:775-941
               
               
               Cow position:chr1:53474198-53474353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:775-944
               
               
               Cow position:chr1:26984051-26984220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:775-945
               
               
               Cow position:chr1:67674561-67674399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:775-947
               
               
               Cow position:chr1:11489117-11488948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:775-950
               
               
               Cow position:chr1:47966981-47966807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):163, 0

               
               
               Conread position:775-951
               
               
               Cow position:chr1:43379320-43379145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):68, 78

               
               
               Conread position:775-954
               
               
               Cow position:chr1:4362015-4361834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:775-957
               
               
               Cow position:chr1:25955937-25956121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):163, 97

               
               
               Conread position:775-959
               
               
               Cow position:chr1:3130507-3130325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:775-959
               
               
               Cow position:chr1:3244253-3244438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):176, 0

               
               
               Conread position:775-959
               
               
               Cow position:chr1:46795800-46795979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:775-959
               
               
               Cow position:chr1:48447508-48447693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):103, 33

               
               
               Conread position:775-959
               
               
               Cow position:chr1:91743420-91743242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:775-960
               
               
               Cow position:chr1:52509723-52509538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):170, 13

               
               
               Conread position:775-960
               
               
               Cow position:chr1:61146162-61146341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):130, 36

               
               
               Conread position:776-948
               
               
               Cow position:chr1:92188000-92188171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:776-951
               
               
               Cow position:chr1:36018740-36018569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:777-941
               
               
               Cow position:chr1:23101719-23101880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):124, 87

               
               
               Conread position:780-901
               
               
               Cow position:chr1:67539606-67539726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:780-940
               
               
               Cow position:chr1:90879689-90879537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:780-945
               
               
               Cow position:chr1:98380250-98380086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:780-950
               
               
               Cow position:chr1:64421588-64421750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:780-951
               
               
               Cow position:chr1:100512942-100513112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:780-951
               
               
               Cow position:chr1:102797951-102797784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):151, 125

               
               
               Conread position:780-958
               
               
               Cow position:chr1:99637207-99637029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:780-959
               
               
               Cow position:chr1:100823084-100823261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):163, 0

               
               
               Conread position:781-955
               
               
               Cow position:chr1:89146827-89146653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:782-938
               
               
               Cow position:chr1:78784855-78784699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):58, 66

               
               
               Conread position:782-944
               
               
               Cow position:chr1:7313639-7313477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):78, 71

               
               
               Conread position:782-948
               
               
               Cow position:chr1:86503315-86503148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):65, 113

               
               
               Conread position:782-949
               
               
               Cow position:chr1:47190946-47190781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:782-949
               
               
               Cow position:chr1:85622578-85622745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:782-951
               
               
               Cow position:chr1:98415636-98415807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):59, 164

               
               
               Conread position:782-954
               
               
               Cow position:chr1:5431111-5431285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):123, 55

               
               
               Conread position:782-958
               
               
               Cow position:chr1:63994506-63994331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):163, 68

               
               
               Conread position:782-959
               
               
               Cow position:chr1:5284183-5284003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:782-959
               
               
               Cow position:chr1:36625564-36625741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:782-959
               
               
               Cow position:chr1:49297700-49297876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):161, 75

               
               
               Conread position:782-959
               
               
               Cow position:chr1:56719389-56719563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:782-959
               
               
               Cow position:chr1:102501067-102500890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):81, 8

               
               
               Conread position:783-955
               
               
               Cow position:chr1:4329853-4329690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:784-944
               
               
               Cow position:chr1:31846048-31846206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:784-949
               
               
               Cow position:chr1:36237832-36237993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:787-929
               
               
               Cow position:chr1:1799084-1799225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):59, 68

               
               
               Conread position:787-941
               
               
               Cow position:chr1:20202357-20202505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:787-941
               
               
               Cow position:chr1:80423678-80423527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):42, 71

               
               
               Conread position:787-949
               
               
               Cow position:chr1:31274936-31274773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):153, 0

               
               
               Conread position:787-951
               
               
               Cow position:chr1:55260182-55260019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):60, 66

               
               
               Conread position:787-951
               
               
               Cow position:chr1:90192470-90192636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:788-941
               
               
               Cow position:chr1:15102938-15103089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:788-941
               
               
               Cow position:chr1:50906625-50906476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:789-949
               
               
               Cow position:chr1:57395451-57395292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:789-959
               
               
               Cow position:chr1:3535126-3535293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):151, 48

               
               
               Conread position:789-959
               
               
               Cow position:chr1:83222040-83222211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):69, 121

               
               
               Conread position:790-951
               
               
               Cow position:chr1:39095545-39095700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:790-952
               
               
               Cow position:chr1:50853965-50854130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:790-959
               
               
               Cow position:chr1:73398017-73397849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):153, 0

               
               
               Conread position:792-951
               
               
               Cow position:chr1:83246484-83246643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:792-955
               
               
               Cow position:chr1:1915968-1915807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):153, 41

               
               
               Conread position:793-941
               
               
               Cow position:chr1:74305022-74304874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:793-950
               
               
               Cow position:chr1:65160188-65160344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:793-951
               
               
               Cow position:chr1:93743899-93744061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:794-942
               
               
               Cow position:chr1:98742078-98742222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:109
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:795-941
               
               
               Cow position:chr1:44814608-44814458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:795-951
               
               
               Cow position:chr1:40212282-40212134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):114, 55

               
               
               Conread position:797-955
               
               
               Cow position:chr1:64705963-64706122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):146, 0

               
               
               Conread position:798-939
               
               
               Cow position:chr1:8133988-8134128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:800-959
               
               
               Cow position:chr1:34767354-34767515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):57, 147

               
               
               Conread position:803-940
               
               
               Cow position:chr1:61560431-61560292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:810-954
               
               
               Cow position:chr1:77704867-77704722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:106
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:814-951
               
               
               Cow position:chr1:20432534-20432397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:101
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:817-941
               
               
               Cow position:chr1:14067360-14067238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:834-956
               
               
               Cow position:chr1:80312151-80312028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:542-847
               
               
               Cow position:chr10:12486045-12486347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):5, 83

               
               
               Conread position:542-949
               
               
               Cow position:chr10:37534381-37534772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:295
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):19, 32

               
               
               Conread position:560-875
               
               
               Cow position:chr10:64961109-64961414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):197, 9

               
               
               Conread position:561-937
               
               
               Cow position:chr10:57461153-57461524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:251
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):14, 70

               
               
               Conread position:562-941
               
               
               Cow position:chr10:62114493-62114860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:246
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):13, 7

               
               
               Conread position:566-761
               
               
               Cow position:chr10:47165678-47165866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:566-870
               
               
               Cow position:chr10:9083102-9083408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):27, 87

               
               
               Conread position:566-874
               
               
               Cow position:chr10:29920030-29919725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:203
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):29, 65

               
               
               Conread position:566-921
               
               
               Cow position:chr10:32503253-32503586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:232
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):27, 81

               
               
               Conread position:566-941
               
               
               Cow position:chr10:3998708-3999065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:256
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):27, 60

               
               
               Conread position:566-941
               
               
               Cow position:chr10:43508797-43509194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:273
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):158, 140

               
               
               Conread position:566-950
               
               
               Cow position:chr10:16598492-16598875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 59

               
               
               Conread position:566-951
               
               
               Cow position:chr10:36489822-36490203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 146

               
               
               Conread position:569-803
               
               
               Cow position:chr10:22520350-22520120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):161, 14

               
               
               Conread position:569-869
               
               
               Cow position:chr10:53336597-53336298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):152, 50

               
               
               Conread position:569-941
               
               
               Cow position:chr10:28395491-28395129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 55

               
               
               Conread position:569-941
               
               
               Cow position:chr10:38133673-38133306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:244
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):21, 131

               
               
               Conread position:569-941
               
               
               Cow position:chr10:41408093-41408441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:254
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):53, 77

               
               
               Conread position:569-941
               
               
               Cow position:chr10:50110094-50109723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:242
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):116, 22

               
               
               Conread position:569-949
               
               
               Cow position:chr10:42637025-42637412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:270
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):6, 292

               
               
               Conread position:569-950
               
               
               Cow position:chr10:23506679-23506305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:266
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):29, 54

               
               
               Conread position:572-875
               
               
               Cow position:chr10:20132717-20132418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):20, 140

               
               
               Conread position:572-950
               
               
               Cow position:chr10:62219635-62220024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:573-949
               
               
               Cow position:chr10:43487520-43487898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 144

               
               
               Conread position:574-703
               
               
               Cow position:chr10:60936759-60936888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:98
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:574-752
               
               
               Cow position:chr10:3985241-3985418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):19, 51

               
               
               Conread position:574-767
               
               
               Cow position:chr10:37444409-37444213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):19, 99

               
               
               Conread position:574-840
               
               
               Cow position:chr10:38014180-38014443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):123, 49

               
               
               Conread position:574-848
               
               
               Cow position:chr10:12314971-12315232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:200
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):125, 50

               
               
               Conread position:574-875
               
               
               Cow position:chr10:22567631-22567336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):20, 34

               
               
               Conread position:574-941
               
               
               Cow position:chr10:24756230-24756584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:256
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):18, 50

               
               
               Conread position:574-949
               
               
               Cow position:chr10:25936051-25936422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:255
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):30, 14

               
               
               Conread position:574-958
               
               
               Cow position:chr10:8161311-8161696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):24, 66

               
               
               Conread position:574-958
               
               
               Cow position:chr10:51944169-51944551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:262
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):23, 53

               
               
               Conread position:574-959
               
               
               Cow position:chr10:2462671-2462286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:265
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):54, 85

               
               
               Conread position:574-959
               
               
               Cow position:chr10:25149706-25150086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:275
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):21, 97

               
               
               Conread position:575-752
               
               
               Cow position:chr10:2304570-2304393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):18, 56

               
               
               Conread position:575-951
               
               
               Cow position:chr10:28721598-28721963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:267
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):18, 72

               
               
               Conread position:576-704
               
               
               Cow position:chr10:9445194-9445069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:104
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):126, 13

               
               
               Conread position:576-718
               
               
               Cow position:chr10:1719705-1719570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:576-736
               
               
               Cow position:chr10:58557015-58557169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):148, 13

               
               
               Conread position:576-831
               
               
               Cow position:chr10:17863407-17863654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):141, 13

               
               
               Conread position:576-941
               
               
               Cow position:chr10:45379189-45378826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 134

               
               
               Conread position:576-950
               
               
               Cow position:chr10:26209442-26209048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:264
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:576-950
               
               
               Cow position:chr10:58690710-58691086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:264
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):118, 15

               
               
               Conread position:576-951
               
               
               Cow position:chr10:13586533-13586888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:260
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):146, 11

               
               
               Conread position:576-956
               
               
               Cow position:chr10:55050693-55051072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:251
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):154, 15

               
               
               Conread position:576-960
               
               
               Cow position:chr10:6365299-6365683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):37, 11

               
               
               Conread position:576-960
               
               
               Cow position:chr10:39398695-39398322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):154, 16

               
               
               Conread position:577-691
               
               
               Cow position:chr10:35856532-35856419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:96
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:577-728
               
               
               Cow position:chr10:6986265-6986412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):123, 11

               
               
               Conread position:577-761
               
               
               Cow position:chr10:32093619-32093804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):15, 90

               
               
               Conread position:577-826
               
               
               Cow position:chr10:24548074-24548315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):15, 49

               
               
               Conread position:577-827
               
               
               Cow position:chr10:29589024-29588775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):15, 100

               
               
               Conread position:577-842
               
               
               Cow position:chr10:22321339-22321602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):15, 95

               
               
               Conread position:577-848
               
               
               Cow position:chr10:29279258-29279531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):15, 55

               
               
               Conread position:577-875
               
               
               Cow position:chr10:67581091-67581397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):69, 11

               
               
               Conread position:577-879
               
               
               Cow position:chr10:32583728-32584028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):15, 50

               
               
               Conread position:577-888
               
               
               Cow position:chr10:23886637-23886334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):29, 48

               
               
               Conread position:577-931
               
               
               Cow position:chr10:21422332-21422000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:243
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):11, 47

               
               
               Conread position:577-941
               
               
               Cow position:chr10:30787797-30787450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:250
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):15, 95

               
               
               Conread position:577-941
               
               
               Cow position:chr10:47542904-47543245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):15, 19

               
               
               Conread position:577-942
               
               
               Cow position:chr10:24763295-24763673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:256
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):71, 42

               
               
               Conread position:577-948
               
               
               Cow position:chr10:6852088-6852444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):15, 47

               
               
               Conread position:577-949
               
               
               Cow position:chr10:19394767-19394382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:265
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):42, 67

               
               
               Conread position:577-951
               
               
               Cow position:chr10:2974265-2973886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:270
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):15, 75

               
               
               Conread position:577-951
               
               
               Cow position:chr10:23912680-23912327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:259
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):15, 93

               
               
               Conread position:577-956
               
               
               Cow position:chr10:29166098-29166469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:266
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):15, 97

               
               
               Conread position:577-956
               
               
               Cow position:chr10:44771472-44771838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:254
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):11, 88

               
               
               Conread position:577-957
               
               
               Cow position:chr10:1423652-1424018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:266
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):51, 98

               
               
               Conread position:578-929
               
               
               Cow position:chr10:64876332-64876686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):30, 121

               
               
               Conread position:579-870
               
               
               Cow position:chr10:53248190-53247898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):43, 12

               
               
               Conread position:579-949
               
               
               Cow position:chr10:10752159-10751804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:259
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):8, 91

               
               
               Conread position:580-816
               
               
               Cow position:chr10:41254751-41254520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):40, 106

               
               
               Conread position:580-937
               
               
               Cow position:chr10:2202303-2201964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:252
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):143, 13

               
               
               Conread position:581-766
               
               
               Cow position:chr10:41255804-41255988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):11, 44

               
               
               Conread position:581-847
               
               
               Cow position:chr10:33733047-33732788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:581-855
               
               
               Cow position:chr10:34175173-34174885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):5, 44

               
               
               Conread position:581-855
               
               
               Cow position:chr10:59164274-59164015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):7, 43

               
               
               Conread position:581-871
               
               
               Cow position:chr10:6642704-6642998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):34, 7

               
               
               Conread position:581-925
               
               
               Cow position:chr10:6505185-6505511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):320, 42

               
               
               Conread position:581-940
               
               
               Cow position:chr10:6435879-6436231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:257
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):11, 36

               
               
               Conread position:581-941
               
               
               Cow position:chr10:1978839-1978497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:254
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):11, 44

               
               
               Conread position:581-941
               
               
               Cow position:chr10:40164113-40163759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:581-948
               
               
               Cow position:chr10:41737126-41737473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:246
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):11, 64

               
               
               Conread position:581-949
               
               
               Cow position:chr10:16645370-16645004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 143

               
               
               Conread position:581-952
               
               
               Cow position:chr10:55733779-55733424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:250
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):7, 43

               
               
               Conread position:581-956
               
               
               Cow position:chr10:45871337-45871707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 92

               
               
               Conread position:581-958
               
               
               Cow position:chr10:49846596-49846967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 44

               
               
               Conread position:581-959
               
               
               Cow position:chr10:66199888-66199511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:252
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):72, 42

               
               
               Conread position:581-960
               
               
               Cow position:chr10:64182272-64182641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:257
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):141, 114

               
               
               Conread position:583-951
               
               
               Cow position:chr10:37235727-37235364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:255
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):9, 41

               
               
               Conread position:584-865
               
               
               Cow position:chr10:4164092-4164372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):138, 42

               
               
               Conread position:584-874
               
               
               Cow position:chr10:31374270-31373979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):120, 52

               
               
               Conread position:584-958
               
               
               Cow position:chr10:37818732-37818362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 40

               
               
               Conread position:585-755
               
               
               Cow position:chr10:65000285-65000115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):112, 66

               
               
               Conread position:585-841
               
               
               Cow position:chr10:8923103-8923358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):133, 38

               
               
               Conread position:585-842
               
               
               Cow position:chr10:13391224-13390968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):118, 39

               
               
               Conread position:585-860
               
               
               Cow position:chr10:15872046-15871775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):117, 38

               
               
               Conread position:585-860
               
               
               Cow position:chr10:24132992-24132726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:192
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:585-892
               
               
               Cow position:chr10:51068886-51069197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):36, 20

               
               
               Conread position:585-933
               
               
               Cow position:chr10:54848602-54848944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 39

               
               
               Conread position:585-937
               
               
               Cow position:chr10:48462513-48462176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:243
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):137, 121

               
               
               Conread position:585-940
               
               
               Cow position:chr10:2704035-2704358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):89, 38

               
               
               Conread position:585-941
               
               
               Cow position:chr10:20095583-20095942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 38

               
               
               Conread position:585-950
               
               
               Cow position:chr10:31534570-31534922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:252
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):138, 20

               
               
               Conread position:585-951
               
               
               Cow position:chr10:43438695-43439039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:251
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):31, 141

               
               
               Conread position:585-956
               
               
               Cow position:chr10:24276907-24276540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:260
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):74, 39

               
               
               Conread position:586-870
               
               
               Cow position:chr10:61839423-61839690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):136, 29

               
               
               Conread position:586-941
               
               
               Cow position:chr10:1996835-1996499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):100, 37

               
               
               Conread position:586-941
               
               
               Cow position:chr10:35653497-35653843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):237, 38

               
               
               Conread position:586-948
               
               
               Cow position:chr10:50559101-50558748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:241
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):20, 38

               
               
               Conread position:588-709
               
               
               Cow position:chr10:24308086-24307967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:96
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:588-860
               
               
               Cow position:chr10:31791430-31791161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):134, 102

               
               
               Conread position:589-707
               
               
               Cow position:chr10:5480813-5480933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:94
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:589-949
               
               
               Cow position:chr10:10219475-10219830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:256
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):34, 109

               
               
               Conread position:591-691
               
               
               Cow position:chr10:35857223-35857124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:86
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-696
               
               
               Cow position:chr10:9798366-9798262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:89
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:591-699
               
               
               Cow position:chr10:48377809-48377702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:94
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:591-709
               
               
               Cow position:chr10:4484498-4484615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:591-732
               
               
               Cow position:chr10:24871720-24871860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):135, 32

               
               
               Conread position:591-736
               
               
               Cow position:chr10:25045855-25045715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):131, 33

               
               
               Conread position:591-742
               
               
               Cow position:chr10:29339553-29339408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):121, 33

               
               
               Conread position:591-748
               
               
               Cow position:chr10:50200542-50200697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):35, 118

               
               
               Conread position:591-752
               
               
               Cow position:chr10:14975963-14975805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:591-752
               
               
               Cow position:chr10:19678703-19678863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):119, 32

               
               
               Conread position:591-752
               
               
               Cow position:chr10:34554257-34554102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):35, 46

               
               
               Conread position:591-753
               
               
               Cow position:chr10:39140011-39140173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):109, 33

               
               
               Conread position:591-753
               
               
               Cow position:chr10:50039231-50039387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:591-764
               
               
               Cow position:chr10:37528774-37528603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:591-765
               
               
               Cow position:chr10:59141259-59141438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:591-767
               
               
               Cow position:chr10:36285331-36285508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):109, 34

               
               
               Conread position:591-768
               
               
               Cow position:chr10:60032743-60032564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):35, 117

               
               
               Conread position:591-785
               
               
               Cow position:chr10:6173191-6173381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):106, 14

               
               
               Conread position:591-808
               
               
               Cow position:chr10:21462069-21462288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):108, 168

               
               
               Conread position:591-809
               
               
               Cow position:chr10:39304019-39303800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):111, 32

               
               
               Conread position:591-809
               
               
               Cow position:chr10:45769874-45770094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-813
               
               
               Cow position:chr10:15462321-15462542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):111, 32

               
               
               Conread position:591-813
               
               
               Cow position:chr10:54476938-54477152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:591-816
               
               
               Cow position:chr10:35767251-35767036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:591-819
               
               
               Cow position:chr10:24744379-24744602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-819
               
               
               Cow position:chr10:24781019-24781245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):129, 32

               
               
               Conread position:591-824
               
               
               Cow position:chr10:10963822-10964049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:591-830
               
               
               Cow position:chr10:42893133-42892903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-842
               
               
               Cow position:chr10:50134975-50134724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):131, 33

               
               
               Conread position:591-843
               
               
               Cow position:chr10:28152548-28152298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):131, 33

               
               
               Conread position:591-843
               
               
               Cow position:chr10:46493172-46492914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-844
               
               
               Cow position:chr10:47412273-47412024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):242, 33

               
               
               Conread position:591-846
               
               
               Cow position:chr10:20997445-20997204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:591-846
               
               
               Cow position:chr10:28105251-28104996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):110, 32

               
               
               Conread position:591-847
               
               
               Cow position:chr10:22528072-22527817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):113, 32

               
               
               Conread position:591-847
               
               
               Cow position:chr10:23936316-23936561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-848
               
               
               Cow position:chr10:65424066-65423819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:591-850
               
               
               Cow position:chr10:68829449-68829197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):83, 70

               
               
               Conread position:591-854
               
               
               Cow position:chr10:37668326-37668065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-855
               
               
               Cow position:chr10:55622014-55621762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):133, 32

               
               
               Conread position:591-857
               
               
               Cow position:chr10:24744962-24745214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):79, 31

               
               
               Conread position:591-857
               
               
               Cow position:chr10:59675419-59675160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):38, 59

               
               
               Conread position:591-860
               
               
               Cow position:chr10:29251997-29252261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):129, 32

               
               
               Conread position:591-865
               
               
               Cow position:chr10:34430388-34430123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):30, 36

               
               
               Conread position:591-867
               
               
               Cow position:chr10:24732145-24732407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):142, 33

               
               
               Conread position:591-867
               
               
               Cow position:chr10:44783176-44783451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):196, 119

               
               
               Conread position:591-869
               
               
               Cow position:chr10:10134816-10135092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):124, 32

               
               
               Conread position:591-870
               
               
               Cow position:chr10:15293106-15293373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):139, 54

               
               
               Conread position:591-873
               
               
               Cow position:chr10:56683377-56683098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):34, 115

               
               
               Conread position:591-875
               
               
               Cow position:chr10:11212947-11213223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):106, 32

               
               
               Conread position:591-875
               
               
               Cow position:chr10:22472150-22472437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):111, 79

               
               
               Conread position:591-875
               
               
               Cow position:chr10:27749509-27749780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):183, 93

               
               
               Conread position:591-875
               
               
               Cow position:chr10:51696574-51696851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):108, 33

               
               
               Conread position:591-878
               
               
               Cow position:chr10:48741328-48741043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):52, 60

               
               
               Conread position:591-879
               
               
               Cow position:chr10:36002030-36002314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 33

               
               
               Conread position:591-892
               
               
               Cow position:chr10:50359753-50360042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):131, 75

               
               
               Conread position:591-900
               
               
               Cow position:chr10:37913353-37913046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):132, 9

               
               
               Conread position:591-910
               
               
               Cow position:chr10:59664144-59663818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):104, 36

               
               
               Conread position:591-911
               
               
               Cow position:chr10:37295831-37295526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:219
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:591-911
               
               
               Cow position:chr10:52278562-52278869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 32

               
               
               Conread position:591-912
               
               
               Cow position:chr10:1087852-1088170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:218
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):110, 33

               
               
               Conread position:591-918
               
               
               Cow position:chr10:11576600-11576924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):35, 113

               
               
               Conread position:591-922
               
               
               Cow position:chr10:48513252-48512922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 36

               
               
               Conread position:591-924
               
               
               Cow position:chr10:35802537-35802206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):170, 32

               
               
               Conread position:591-928
               
               
               Cow position:chr10:26577382-26577717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):25, 53

               
               
               Conread position:591-928
               
               
               Cow position:chr10:67627161-67626839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:229
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):103, 14

               
               
               Conread position:591-929
               
               
               Cow position:chr10:42745747-42746073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:244
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):34, 16

               
               
               Conread position:591-933
               
               
               Cow position:chr10:30523235-30522897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):37, 112

               
               
               Conread position:591-933
               
               
               Cow position:chr10:66194473-66194136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 79

               
               
               Conread position:591-934
               
               
               Cow position:chr10:19372506-19372167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:591-934
               
               
               Cow position:chr10:40421010-40420687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):131, 63

               
               
               Conread position:591-935
               
               
               Cow position:chr10:25699484-25699830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:236
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):177, 33

               
               
               Conread position:591-935
               
               
               Cow position:chr10:52296332-52296665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 32

               
               
               Conread position:591-935
               
               
               Cow position:chr10:56828486-56828150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 32

               
               
               Conread position:591-936
               
               
               Cow position:chr10:18042016-18042352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:248
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):33, 75

               
               
               Conread position:591-937
               
               
               Cow position:chr10:2449184-2449523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):128, 55

               
               
               Conread position:591-937
               
               
               Cow position:chr10:14817330-14816990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):18, 94

               
               
               Conread position:591-937
               
               
               Cow position:chr10:33915231-33914897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):12, 65

               
               
               Conread position:591-937
               
               
               Cow position:chr10:35862395-35862061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:244
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):28, 108

               
               
               Conread position:591-937
               
               
               Cow position:chr10:46195614-46195951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):52, 32

               
               
               Conread position:591-938
               
               
               Cow position:chr10:37415620-37415954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:242
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):131, 24

               
               
               Conread position:591-938
               
               
               Cow position:chr10:56080339-56079989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:238
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):267, 104

               
               
               Conread position:591-939
               
               
               Cow position:chr10:21657255-21657585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-939
               
               
               Cow position:chr10:22396083-22396445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:245
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):108, 32

               
               
               Conread position:591-940
               
               
               Cow position:chr10:35904993-35904670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:231
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:591-941
               
               
               Cow position:chr10:5889938-5889584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 294

               
               
               Conread position:591-941
               
               
               Cow position:chr10:6489701-6490053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 33

               
               
               Conread position:591-941
               
               
               Cow position:chr10:10120030-10120362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):172, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr10:13765333-13764989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:239
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):86, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr10:15868068-15868430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 33

               
               
               Conread position:591-941
               
               
               Cow position:chr10:16093047-16093385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):139, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr10:21082216-21082545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:226
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):236, 33

               
               
               Conread position:591-941
               
               
               Cow position:chr10:22390420-22390772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr10:23576374-23576715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 124

               
               
               Conread position:591-941
               
               
               Cow position:chr10:24561153-24560814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr10:31401063-31400724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr10:35246108-35245778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:234
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):130, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr10:37287342-37286998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):29, 54

               
               
               Conread position:591-941
               
               
               Cow position:chr10:37529434-37529099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:245
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr10:39875314-39874965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):133, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr10:45370886-45371232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr10:45476383-45476044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:233
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:591-941
               
               
               Cow position:chr10:47773561-47773895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):57, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr10:51804200-51803872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:241
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):252, 9

               
               
               Conread position:591-941
               
               
               Cow position:chr10:54504437-54504778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr10:63276221-63276564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 120

               
               
               Conread position:591-942
               
               
               Cow position:chr10:10720841-10720496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):341, 32

               
               
               Conread position:591-942
               
               
               Cow position:chr10:35731691-35731352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-942
               
               
               Cow position:chr10:60960771-60961122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:249
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):131, 79

               
               
               Conread position:591-944
               
               
               Cow position:chr10:38944088-38944437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):139, 106

               
               
               Conread position:591-944
               
               
               Cow position:chr10:40737834-40738168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):133, 71

               
               
               Conread position:591-944
               
               
               Cow position:chr10:64285961-64285621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):139, 36

               
               
               Conread position:591-945
               
               
               Cow position:chr10:1976489-1976140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 115

               
               
               Conread position:591-945
               
               
               Cow position:chr10:17844595-17844944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 75

               
               
               Conread position:591-945
               
               
               Cow position:chr10:44764673-44764313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 79

               
               
               Conread position:591-946
               
               
               Cow position:chr10:7366954-7366611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:235
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):129, 32

               
               
               Conread position:591-947
               
               
               Cow position:chr10:56475297-56475635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):163, 111

               
               
               Conread position:591-948
               
               
               Cow position:chr10:50332416-50332775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:252
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):80, 149

               
               
               Conread position:591-948
               
               
               Cow position:chr10:52569423-52569777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 55

               
               
               Conread position:591-948
               
               
               Cow position:chr10:63883784-63884130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:253
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):39, 73

               
               
               Conread position:591-949
               
               
               Cow position:chr10:9656709-9656342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 285

               
               
               Conread position:591-949
               
               
               Cow position:chr10:19895230-19895577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 32

               
               
               Conread position:591-949
               
               
               Cow position:chr10:20372296-20371949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 116

               
               
               Conread position:591-949
               
               
               Cow position:chr10:22341400-22341757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 32

               
               
               Conread position:591-949
               
               
               Cow position:chr10:27717010-27716654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):53, 44

               
               
               Conread position:591-949
               
               
               Cow position:chr10:28178977-28178632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):245, 80

               
               
               Conread position:591-949
               
               
               Cow position:chr10:37014467-37014819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 58

               
               
               Conread position:591-949
               
               
               Cow position:chr10:56732868-56733212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 64

               
               
               Conread position:591-950
               
               
               Cow position:chr10:19104341-19103997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 106

               
               
               Conread position:591-950
               
               
               Cow position:chr10:22616807-22616455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):347, 115

               
               
               Conread position:591-950
               
               
               Cow position:chr10:49169222-49168845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:264
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):95, 138

               
               
               Conread position:591-950
               
               
               Cow position:chr10:55122625-55122993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 312

               
               
               Conread position:591-950
               
               
               Cow position:chr10:57059450-57059090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 26

               
               
               Conread position:591-950
               
               
               Cow position:chr10:60237262-60236916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 78

               
               
               Conread position:591-950
               
               
               Cow position:chr10:63940605-63940955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):139, 21

               
               
               Conread position:591-951
               
               
               Cow position:chr10:721133-721475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:247
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):116, 33

               
               
               Conread position:591-951
               
               
               Cow position:chr10:2613198-2613551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-951
               
               
               Cow position:chr10:5600163-5599812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:239
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):22, 34

               
               
               Conread position:591-951
               
               
               Cow position:chr10:7291965-7291630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):61, 33

               
               
               Conread position:591-951
               
               
               Cow position:chr10:8093482-8093140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:249
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-951
               
               
               Cow position:chr10:11463835-11463475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 117

               
               
               Conread position:591-951
               
               
               Cow position:chr10:23056247-23055908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:248
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):52, 32

               
               
               Conread position:591-951
               
               
               Cow position:chr10:24870996-24871357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 115

               
               
               Conread position:591-951
               
               
               Cow position:chr10:30352679-30353035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-951
               
               
               Cow position:chr10:45965332-45965681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:249
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):34, 106

               
               
               Conread position:591-951
               
               
               Cow position:chr10:65071142-65071508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 116

               
               
               Conread position:591-951
               
               
               Cow position:chr10:67443274-67442936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:247
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-952
               
               
               Cow position:chr10:39227977-39228352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-955
               
               
               Cow position:chr10:11967010-11966657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 32

               
               
               Conread position:591-956
               
               
               Cow position:chr10:15817961-15817605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-956
               
               
               Cow position:chr10:31362376-31362031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:252
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-957
               
               
               Cow position:chr10:35901161-35901515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:257
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):265, 32

               
               
               Conread position:591-958
               
               
               Cow position:chr10:15318715-15319095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:258
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):131, 38

               
               
               Conread position:591-959
               
               
               Cow position:chr10:4184023-4184399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 132

               
               
               Conread position:591-959
               
               
               Cow position:chr10:5543414-5543057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:250
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):29, 53

               
               
               Conread position:591-959
               
               
               Cow position:chr10:6719733-6720094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:263
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):216, 16

               
               
               Conread position:591-959
               
               
               Cow position:chr10:9675626-9675282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:249
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):127, 32

               
               
               Conread position:591-959
               
               
               Cow position:chr10:10048511-10048872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:260
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):29, 109

               
               
               Conread position:591-959
               
               
               Cow position:chr10:17175866-17176245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:257
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):131, 117

               
               
               Conread position:591-959
               
               
               Cow position:chr10:25509531-25509874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:247
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):309, 33

               
               
               Conread position:591-959
               
               
               Cow position:chr10:29360739-29361129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:258
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):32, 21

               
               
               Conread position:591-959
               
               
               Cow position:chr10:31027814-31027448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 38

               
               
               Conread position:591-959
               
               
               Cow position:chr10:44730647-44730280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:249
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):167, 104

               
               
               Conread position:591-959
               
               
               Cow position:chr10:50183217-50182860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 33

               
               
               Conread position:591-959
               
               
               Cow position:chr10:51942622-51942991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:253
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):9, 33

               
               
               Conread position:591-960
               
               
               Cow position:chr10:11080793-11081168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:253
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):132, 34

               
               
               Conread position:591-960
               
               
               Cow position:chr10:15889315-15889675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:258
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):15, 55

               
               
               Conread position:591-960
               
               
               Cow position:chr10:34662498-34662133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):137, 100

               
               
               Conread position:591-960
               
               
               Cow position:chr10:40106938-40107295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:254
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):146, 20

               
               
               Conread position:591-960
               
               
               Cow position:chr10:51306161-51306529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:256
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):35, 129

               
               
               Conread position:591-960
               
               
               Cow position:chr10:61588431-61588065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 61

               
               
               Conread position:591-960
               
               
               Cow position:chr10:66127693-66128044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:250
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):31, 92

               
               
               Conread position:592-716
               
               
               Cow position:chr10:38513007-38513131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:100
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):101, 31

               
               
               Conread position:592-753
               
               
               Cow position:chr10:48388435-48388280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):130, 29

               
               
               Conread position:592-766
               
               
               Cow position:chr10:64839183-64839007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):31, 125

               
               
               Conread position:592-812
               
               
               Cow position:chr10:33240845-33240630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):129, 32

               
               
               Conread position:592-842
               
               
               Cow position:chr10:55930027-55930277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):34, 74

               
               
               Conread position:592-859
               
               
               Cow position:chr10:49045671-49045934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):27, 122

               
               
               Conread position:592-866
               
               
               Cow position:chr10:52113837-52113570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:205
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):123, 33

               
               
               Conread position:592-869
               
               
               Cow position:chr10:53084001-53084275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):34, 118

               
               
               Conread position:592-870
               
               
               Cow position:chr10:35779069-35778793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:201
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):129, 31

               
               
               Conread position:592-873
               
               
               Cow position:chr10:31779437-31779158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):138, 6

               
               
               Conread position:592-874
               
               
               Cow position:chr10:47724780-47725055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):34, 95

               
               
               Conread position:592-875
               
               
               Cow position:chr10:24375385-24375656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):130, 34

               
               
               Conread position:592-918
               
               
               Cow position:chr10:24096543-24096217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:218
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):34, 53

               
               
               Conread position:592-918
               
               
               Cow position:chr10:29188529-29188200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:592-929
               
               
               Cow position:chr10:57142379-57142041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):131, 31

               
               
               Conread position:592-935
               
               
               Cow position:chr10:54730847-54731193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):27, 82

               
               
               Conread position:592-937
               
               
               Cow position:chr10:10468813-10469134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):20, 33

               
               
               Conread position:592-937
               
               
               Cow position:chr10:45657977-45658310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 110

               
               
               Conread position:592-937
               
               
               Cow position:chr10:50534041-50533707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:239
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):34, 90

               
               
               Conread position:592-937
               
               
               Cow position:chr10:54948304-54947973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):37, 117

               
               
               Conread position:592-940
               
               
               Cow position:chr10:57786172-57786510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 31

               
               
               Conread position:592-941
               
               
               Cow position:chr10:8404047-8404381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):107, 31

               
               
               Conread position:592-941
               
               
               Cow position:chr10:24313056-24312717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 112

               
               
               Conread position:592-941
               
               
               Cow position:chr10:33215633-33215967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):131, 31

               
               
               Conread position:592-941
               
               
               Cow position:chr10:46150716-46151043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):34, 45

               
               
               Conread position:592-941
               
               
               Cow position:chr10:62353296-62353632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:242
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:592-941
               
               
               Cow position:chr10:68926986-68927322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):330, 57

               
               
               Conread position:592-943
               
               
               Cow position:chr10:38942260-38942617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:247
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):34, 116

               
               
               Conread position:592-945
               
               
               Cow position:chr10:17073526-17073188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:592-945
               
               
               Cow position:chr10:20391613-20391255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):28, 67

               
               
               Conread position:592-946
               
               
               Cow position:chr10:37764853-37765217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:252
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):107, 71

               
               
               Conread position:592-948
               
               
               Cow position:chr10:26829985-26829624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:239
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):34, 73

               
               
               Conread position:592-949
               
               
               Cow position:chr10:747297-747655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):35, 100

               
               
               Conread position:592-949
               
               
               Cow position:chr10:13368181-13368540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:247
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):27, 61

               
               
               Conread position:592-949
               
               
               Cow position:chr10:29211794-29212142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):34, 52

               
               
               Conread position:592-949
               
               
               Cow position:chr10:34607394-34607747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 31

               
               
               Conread position:592-949
               
               
               Cow position:chr10:38370626-38370269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 32

               
               
               Conread position:592-949
               
               
               Cow position:chr10:61511024-61511367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:239
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):36, 55

               
               
               Conread position:592-949
               
               
               Cow position:chr10:69049217-69048860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:232
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):34, 116

               
               
               Conread position:592-951
               
               
               Cow position:chr10:34655280-34654926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 31

               
               
               Conread position:592-956
               
               
               Cow position:chr10:13311568-13311936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:254
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):112, 26

               
               
               Conread position:592-956
               
               
               Cow position:chr10:35791765-35792118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 31

               
               
               Conread position:592-958
               
               
               Cow position:chr10:39387292-39387635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:253
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):66, 32

               
               
               Conread position:593-732
               
               
               Cow position:chr10:1201768-1201906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):131, 113

               
               
               Conread position:593-753
               
               
               Cow position:chr10:17983016-17983174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):25, 117

               
               
               Conread position:593-753
               
               
               Cow position:chr10:20505372-20505536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:593-761
               
               
               Cow position:chr10:57457169-57457334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:593-766
               
               
               Cow position:chr10:5607475-5607648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):33, 129

               
               
               Conread position:593-766
               
               
               Cow position:chr10:6516349-6516178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):86, 69

               
               
               Conread position:593-848
               
               
               Cow position:chr10:52046694-52046956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):33, 118

               
               
               Conread position:593-848
               
               
               Cow position:chr10:59152032-59151779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):35, 128

               
               
               Conread position:593-855
               
               
               Cow position:chr10:2849188-2849441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):27, 71

               
               
               Conread position:593-855
               
               
               Cow position:chr10:37173616-37173354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):129, 97

               
               
               Conread position:593-855
               
               
               Cow position:chr10:38376818-38376567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):233, 30

               
               
               Conread position:593-875
               
               
               Cow position:chr10:2537928-2538202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):129, 113

               
               
               Conread position:593-937
               
               
               Cow position:chr10:9576204-9575878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:243
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:593-939
               
               
               Cow position:chr10:17836783-17837126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):34, 104

               
               
               Conread position:593-941
               
               
               Cow position:chr10:20553016-20553354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:238
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):130, 30

               
               
               Conread position:593-941
               
               
               Cow position:chr10:34661480-34661157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):81, 30

               
               
               Conread position:593-941
               
               
               Cow position:chr10:38240917-38241255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 64

               
               
               Conread position:593-941
               
               
               Cow position:chr10:51289091-51289419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):28, 62

               
               
               Conread position:593-941
               
               
               Cow position:chr10:62286386-62286740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:242
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):66, 31

               
               
               Conread position:593-947
               
               
               Cow position:chr10:48317123-48316763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 32

               
               
               Conread position:593-948
               
               
               Cow position:chr10:54962893-54962541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):97, 122

               
               
               Conread position:593-949
               
               
               Cow position:chr10:33891256-33890916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):33, 116

               
               
               Conread position:593-949
               
               
               Cow position:chr10:57033952-57033614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:233
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:593-951
               
               
               Cow position:chr10:64041919-64042269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:593-952
               
               
               Cow position:chr10:42312740-42313093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 50

               
               
               Conread position:593-959
               
               
               Cow position:chr10:4109423-4109771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:256
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):50, 109

               
               
               Conread position:593-959
               
               
               Cow position:chr10:14850059-14850410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):131, 58

               
               
               Conread position:593-959
               
               
               Cow position:chr10:24752987-24753328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:260
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):137, 33

               
               
               Conread position:593-960
               
               
               Cow position:chr10:53907885-53907533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:244
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):158, 101

               
               
               Conread position:594-712
               
               
               Cow position:chr10:25882259-25882370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:594-742
               
               
               Cow position:chr10:19402769-19402918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:594-812
               
               
               Cow position:chr10:59588333-59588126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):206, 52

               
               
               Conread position:594-848
               
               
               Cow position:chr10:30613673-30613912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:594-894
               
               
               Cow position:chr10:53973682-53973973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:594-949
               
               
               Cow position:chr10:4148314-4148673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:238
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):32, 274

               
               
               Conread position:595-700
               
               
               Cow position:chr10:37709198-37709096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:88
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:595-941
               
               
               Cow position:chr10:47690229-47690572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:245
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):254, 12

               
               
               Conread position:595-951
               
               
               Cow position:chr10:41626425-41626777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:252
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):27, 55

               
               
               Conread position:596-875
               
               
               Cow position:chr10:15115452-15115727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):134, 27

               
               
               Conread position:596-924
               
               
               Cow position:chr10:1488675-1488986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):5, 29

               
               
               Conread position:596-930
               
               
               Cow position:chr10:53674661-53674991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:232
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):127, 27

               
               
               Conread position:596-941
               
               
               Cow position:chr10:65345632-65345289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):107, 28

               
               
               Conread position:596-949
               
               
               Cow position:chr10:33665675-33666025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):102, 27

               
               
               Conread position:596-950
               
               
               Cow position:chr10:52695892-52695544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 27

               
               
               Conread position:596-960
               
               
               Cow position:chr10:69564442-69564800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:247
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):155, 97

               
               
               Conread position:597-712
               
               
               Cow position:chr10:48499942-48500053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:597-720
               
               
               Cow position:chr10:49569040-49569161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:98
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):95, 69

               
               
               Conread position:597-766
               
               
               Cow position:chr10:52029458-52029629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):24, 121

               
               
               Conread position:597-848
               
               
               Cow position:chr10:46184587-46184825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):122, 49

               
               
               Conread position:597-855
               
               
               Cow position:chr10:40906152-40906406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):29, 5

               
               
               Conread position:597-878
               
               
               Cow position:chr10:836654-836923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):73, 99

               
               
               Conread position:597-941
               
               
               Cow position:chr10:14947100-14947428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 6

               
               
               Conread position:597-951
               
               
               Cow position:chr10:10148492-10148835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:597-951
               
               
               Cow position:chr10:49146358-49146693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:249
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):170, 26

               
               
               Conread position:597-955
               
               
               Cow position:chr10:2708357-2708705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):49, 88

               
               
               Conread position:598-891
               
               
               Cow position:chr10:66211456-66211164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):28, 96

               
               
               Conread position:598-960
               
               
               Cow position:chr10:19191615-19191949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:255
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):125, 25

               
               
               Conread position:600-808
               
               
               Cow position:chr10:21016149-21015942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):132, 110

               
               
               Conread position:600-870
               
               
               Cow position:chr10:6543563-6543832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):109, 23

               
               
               Conread position:600-875
               
               
               Cow position:chr10:28776191-28776463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:600-940
               
               
               Cow position:chr10:17022723-17022395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):122, 23

               
               
               Conread position:601-951
               
               
               Cow position:chr10:16986171-16986520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 78

               
               
               Conread position:602-848
               
               
               Cow position:chr10:66593260-66593015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):10, 85

               
               
               Conread position:602-870
               
               
               Cow position:chr10:33117108-33116843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):41, 21

               
               
               Conread position:602-944
               
               
               Cow position:chr10:37512402-37512062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:246
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):121, 60

               
               
               Conread position:602-955
               
               
               Cow position:chr10:11009260-11009608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):275, 6

               
               
               Conread position:604-833
               
               
               Cow position:chr10:13163599-13163378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:604-922
               
               
               Cow position:chr10:8449339-8449672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):21, 117

               
               
               Conread position:604-937
               
               
               Cow position:chr10:40147792-40147459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):89, 99

               
               
               Conread position:604-957
               
               
               Cow position:chr10:43531102-43531460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:245
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):17, 107

               
               
               Conread position:605-797
               
               
               Cow position:chr10:25260099-25260290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):100, 18

               
               
               Conread position:605-949
               
               
               Cow position:chr10:8277393-8277738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):21, 105

               
               
               Conread position:606-939
               
               
               Cow position:chr10:31527822-31528140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):35, 102

               
               
               Conread position:607-875
               
               
               Cow position:chr10:24022430-24022171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):115, 16

               
               
               Conread position:608-946
               
               
               Cow position:chr10:21923672-21923338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:235
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):14, 99

               
               
               Conread position:608-958
               
               
               Cow position:chr10:42123746-42123399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:236
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):94, 115

               
               
               Conread position:609-958
               
               
               Cow position:chr10:6384385-6384719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:246
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):336, 14

               
               
               Conread position:612-941
               
               
               Cow position:chr10:66003726-66004052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):22, 56

               
               
               Conread position:612-954
               
               
               Cow position:chr10:38430712-38430379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):66, 95

               
               
               Conread position:613-918
               
               
               Cow position:chr10:2899535-2899826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):109, 13

               
               
               Conread position:613-941
               
               
               Cow position:chr10:61922285-61921968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:613-950
               
               
               Cow position:chr10:64227260-64227573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):228, 58

               
               
               Conread position:614-791
               
               
               Cow position:chr10:331230-331409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:614-841
               
               
               Cow position:chr10:533383-533610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):109, 100

               
               
               Conread position:615-950
               
               
               Cow position:chr10:67729004-67728666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):8, 56

               
               
               Conread position:617-940
               
               
               Cow position:chr10:59010278-59009965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:617-957
               
               
               Cow position:chr10:48679407-48679076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:228
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):22, 47

               
               
               Conread position:618-855
               
               
               Cow position:chr10:30441178-30440954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:618-906
               
               
               Cow position:chr10:10750395-10750106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):104, 72

               
               
               Conread position:618-941
               
               
               Cow position:chr10:24004612-24004288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):76, 89

               
               
               Conread position:618-957
               
               
               Cow position:chr10:15249187-15248848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:233
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):60, 7

               
               
               Conread position:619-940
               
               
               Cow position:chr10:33194889-33195219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:619-940
               
               
               Cow position:chr10:58451513-58451207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):103, 76

               
               
               Conread position:619-959
               
               
               Cow position:chr10:27119108-27118772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:233
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):88, 138

               
               
               Conread position:620-937
               
               
               Cow position:chr10:6663886-6664201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):82, 235

               
               
               Conread position:621-932
               
               
               Cow position:chr10:61982247-61982556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):153, 81

               
               
               Conread position:621-944
               
               
               Cow position:chr10:25342463-25342760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):53, 47

               
               
               Conread position:621-949
               
               
               Cow position:chr10:48573816-48573493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):104, 16

               
               
               Conread position:622-927
               
               
               Cow position:chr10:15309535-15309248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):100, 46

               
               
               Conread position:623-812
               
               
               Cow position:chr10:12919493-12919307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):99, 148

               
               
               Conread position:623-951
               
               
               Cow position:chr10:45295277-45294954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):107, 47

               
               
               Conread position:624-959
               
               
               Cow position:chr10:36531868-36531529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):106, 90

               
               
               Conread position:625-945
               
               
               Cow position:chr10:37068548-37068242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):98, 47

               
               
               Conread position:625-949
               
               
               Cow position:chr10:46849733-46850050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):51, 70

               
               
               Conread position:626-949
               
               
               Cow position:chr10:3364311-3364003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):126, 37

               
               
               Conread position:627-949
               
               
               Cow position:chr10:7383743-7383433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):319, 7

               
               
               Conread position:628-879
               
               
               Cow position:chr10:52120607-52120858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):102, 68

               
               
               Conread position:628-951
               
               
               Cow position:chr10:25913927-25913597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:239
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):94, 67

               
               
               Conread position:628-960
               
               
               Cow position:chr10:23026370-23026688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:220
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):94, 67

               
               
               Conread position:629-941
               
               
               Cow position:chr10:46327557-46327865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:219
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):98, 66

               
               
               Conread position:629-941
               
               
               Cow position:chr10:60446601-60446905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):93, 80

               
               
               Conread position:629-951
               
               
               Cow position:chr10:39123998-39124323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:222
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):94, 48

               
               
               Conread position:629-951
               
               
               Cow position:chr10:69934899-69934598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):93, 29

               
               
               Conread position:629-952
               
               
               Cow position:chr10:12651706-12652013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:217
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):93, 66

               
               
               Conread position:630-950
               
               
               Cow position:chr10:52881750-52881433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:226
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):86, 76

               
               
               Conread position:631-866
               
               
               Cow position:chr10:59844043-59843805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):135, 77

               
               
               Conread position:631-940
               
               
               Cow position:chr10:31005148-31004841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 41

               
               
               Conread position:632-927
               
               
               Cow position:chr10:58718516-58718814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):70, 241

               
               
               Conread position:632-949
               
               
               Cow position:chr10:49942344-49942655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):74, 39

               
               
               Conread position:633-944
               
               
               Cow position:chr10:55577191-55577505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):97, 30

               
               
               Conread position:634-875
               
               
               Cow position:chr10:49948005-49947767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):18, 37

               
               
               Conread position:636-951
               
               
               Cow position:chr10:34673896-34674199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):88, 32

               
               
               Conread position:637-949
               
               
               Cow position:chr10:33881906-33881597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:640-863
               
               
               Cow position:chr10:34660362-34660142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):90, 30

               
               
               Conread position:644-896
               
               
               Cow position:chr10:13197954-13197694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):33, 74

               
               
               Conread position:650-923
               
               
               Cow position:chr10:68572243-68572513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:184
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):63, 52

               
               
               Conread position:650-941
               
               
               Cow position:chr10:19098727-19099004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):54, 74

               
               
               Conread position:650-941
               
               
               Cow position:chr10:22888926-22888643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):72, 65

               
               
               Conread position:650-959
               
               
               Cow position:chr10:19539930-19539632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):73, 11

               
               
               Conread position:651-941
               
               
               Cow position:chr10:6569765-6569472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):268, 46

               
               
               Conread position:651-941
               
               
               Cow position:chr10:42230680-42230980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):53, 65

               
               
               Conread position:651-941
               
               
               Cow position:chr10:61510050-61509772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:209
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:651-959
               
               
               Cow position:chr10:66321192-66320889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):48, 72

               
               
               Conread position:652-944
               
               
               Cow position:chr10:48178245-48178517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):70, 154

               
               
               Conread position:652-949
               
               
               Cow position:chr10:46934893-46934595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:207
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:652-949
               
               
               Cow position:chr10:56996810-56996528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:653-935
               
               
               Cow position:chr10:30216815-30216548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):58, 49

               
               
               Conread position:653-949
               
               
               Cow position:chr10:63484534-63484820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):21, 16

               
               
               Conread position:654-930
               
               
               Cow position:chr10:51283880-51284152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):52, 9

               
               
               Conread position:654-932
               
               
               Cow position:chr10:46262081-46262350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):12, 54

               
               
               Conread position:654-937
               
               
               Cow position:chr10:55396084-55395808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):55, 33

               
               
               Conread position:654-940
               
               
               Cow position:chr10:33084543-33084255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):203, 53

               
               
               Conread position:654-941
               
               
               Cow position:chr10:56136389-56136680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):70, 54

               
               
               Conread position:655-929
               
               
               Cow position:chr10:41197783-41198057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):67, 47

               
               
               Conread position:656-937
               
               
               Cow position:chr10:33573345-33573076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:657-923
               
               
               Cow position:chr10:46575404-46575663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):57, 45

               
               
               Conread position:658-937
               
               
               Cow position:chr10:66605766-66605491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):40, 58

               
               
               Conread position:658-949
               
               
               Cow position:chr10:67379196-67379479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:659-949
               
               
               Cow position:chr10:65582347-65582630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):159, 59

               
               
               Conread position:663-958
               
               
               Cow position:chr10:25813206-25813508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):61, 47

               
               
               Conread position:672-951
               
               
               Cow position:chr10:23346393-23346118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):5, 31

               
               
               Conread position:673-873
               
               
               Cow position:chr10:53405388-53405579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:673-937
               
               
               Cow position:chr10:10137780-10138031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:673-941
               
               
               Cow position:chr10:60491346-60491088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):187, 32

               
               
               Conread position:673-944
               
               
               Cow position:chr10:47182653-47182388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:673-948
               
               
               Cow position:chr10:35715689-35715405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):57, 196

               
               
               Conread position:673-949
               
               
               Cow position:chr10:66365206-66365487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):153, 63

               
               
               Conread position:673-951
               
               
               Cow position:chr10:58044218-58043944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):57, 23

               
               
               Conread position:673-951
               
               
               Cow position:chr10:60962324-60962619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):36, 17

               
               
               Conread position:673-960
               
               
               Cow position:chr10:34646536-34646263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):27, 44

               
               
               Conread position:674-955
               
               
               Cow position:chr10:55382227-55382507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):56, 31

               
               
               Conread position:675-939
               
               
               Cow position:chr10:49923462-49923193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):16, 42

               
               
               Conread position:676-959
               
               
               Cow position:chr10:17405183-17404881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):48, 36

               
               
               Conread position:677-941
               
               
               Cow position:chr10:25465980-25466245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):23, 34

               
               
               Conread position:677-941
               
               
               Cow position:chr10:36400144-36399873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):36, 178

               
               
               Conread position:677-955
               
               
               Cow position:chr10:5465890-5465614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):47, 32

               
               
               Conread position:678-941
               
               
               Cow position:chr10:41676495-41676240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):23, 48

               
               
               Conread position:679-928
               
               
               Cow position:chr10:51727499-51727264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):51, 18

               
               
               Conread position:680-929
               
               
               Cow position:chr10:55319409-55319656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):29, 185

               
               
               Conread position:681-948
               
               
               Cow position:chr10:43586367-43586102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):42, 104

               
               
               Conread position:686-960
               
               
               Cow position:chr10:31803557-31803288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):36, 29

               
               
               Conread position:695-936
               
               
               Cow position:chr10:35868084-35867847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):27, 75

               
               
               Conread position:695-941
               
               
               Cow position:chr10:11047267-11047030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):175, 42

               
               
               Conread position:695-941
               
               
               Cow position:chr10:60697691-60697454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:179
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):28, 11

               
               
               Conread position:695-960
               
               
               Cow position:chr10:23379068-23379323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:696-959
               
               
               Cow position:chr10:49223846-49224108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):21, 9

               
               
               Conread position:697-938
               
               
               Cow position:chr10:54776480-54776718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):25, 41

               
               
               Conread position:697-949
               
               
               Cow position:chr10:45337614-45337866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):34, 17

               
               
               Conread position:699-937
               
               
               Cow position:chr10:32080213-32080438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:699-959
               
               
               Cow position:chr10:58414643-58414377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):31, 213

               
               
               Conread position:701-951
               
               
               Cow position:chr10:8853488-8853735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):15, 109

               
               
               Conread position:702-930
               
               
               Cow position:chr10:23128047-23127821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):25, 14

               
               
               Conread position:705-959
               
               
               Cow position:chr10:22981037-22980787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):25, 161

               
               
               Conread position:709-933
               
               
               Cow position:chr10:23071799-23071575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):21, 42

               
               
               Conread position:709-941
               
               
               Cow position:chr10:3275924-3276143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):192, 24

               
               
               Conread position:709-941
               
               
               Cow position:chr10:39622408-39622189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):14, 29

               
               
               Conread position:709-941
               
               
               Cow position:chr10:53706568-53706800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):180, 137

               
               
               Conread position:709-949
               
               
               Cow position:chr10:32358360-32358600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:709-951
               
               
               Cow position:chr10:23311082-23310841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):14, 67

               
               
               Conread position:710-941
               
               
               Cow position:chr10:705049-704812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):14, 69

               
               
               Conread position:710-945
               
               
               Cow position:chr10:19238926-19238700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):11, 54

               
               
               Conread position:710-949
               
               
               Cow position:chr10:54699759-54699524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):21, 136

               
               
               Conread position:710-950
               
               
               Cow position:chr10:35981537-35981776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):20, 9

               
               
               Conread position:711-941
               
               
               Cow position:chr10:38995176-38995410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):11, 161

               
               
               Conread position:711-955
               
               
               Cow position:chr10:10152956-10153196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):6, 125

               
               
               Conread position:713-938
               
               
               Cow position:chr10:2857001-2857219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):207, 7

               
               
               Conread position:713-940
               
               
               Cow position:chr10:17149829-17150046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):9, 138

               
               
               Conread position:713-949
               
               
               Cow position:chr10:55600207-55599969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):9, 118

               
               
               Conread position:714-941
               
               
               Cow position:chr10:10027525-10027749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):16, 43

               
               
               Conread position:714-941
               
               
               Cow position:chr10:24831133-24830896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):17, 216

               
               
               Conread position:714-950
               
               
               Cow position:chr10:10634169-10634395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):8, 137

               
               
               Conread position:715-930
               
               
               Cow position:chr10:21564700-21564913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):15, 96

               
               
               Conread position:715-950
               
               
               Cow position:chr10:31718432-31718197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):9, 139

               
               
               Conread position:716-957
               
               
               Cow position:chr10:17568149-17567915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):14, 68

               
               
               Conread position:717-937
               
               
               Cow position:chr10:49634020-49634236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):6, 132

               
               
               Conread position:717-945
               
               
               Cow position:chr10:16830432-16830205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:169
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:717-951
               
               
               Cow position:chr10:35090002-35090237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:721-941
               
               
               Cow position:chr10:37375792-37375570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:721-950
               
               
               Cow position:chr10:7835628-7835412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:721-951
               
               
               Cow position:chr10:5784290-5784066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):221, 18

               
               
               Conread position:724-944
               
               
               Cow position:chr10:35249173-35248962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):200, 42

               
               
               Conread position:724-947
               
               
               Cow position:chr10:65681753-65681527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:724-959
               
               
               Cow position:chr10:38205749-38205527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):39, 52

               
               
               Conread position:724-959
               
               
               Cow position:chr10:47159176-47159398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:725-929
               
               
               Cow position:chr10:48620049-48619851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:725-945
               
               
               Cow position:chr10:35638177-35637962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):180, 67

               
               
               Conread position:726-929
               
               
               Cow position:chr10:30929924-30929722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):41, 134

               
               
               Conread position:726-937
               
               
               Cow position:chr10:20485596-20485389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:730-941
               
               
               Cow position:chr10:39258527-39258316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):104, 88

               
               
               Conread position:731-948
               
               
               Cow position:chr10:62919526-62919308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):28, 112

               
               
               Conread position:731-955
               
               
               Cow position:chr10:37174484-37174262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):215, 97

               
               
               Conread position:732-951
               
               
               Cow position:chr10:27178465-27178671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:733-950
               
               
               Cow position:chr10:48377427-48377211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:738-958
               
               
               Cow position:chr10:46042969-46043187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):202, 71

               
               
               Conread position:740-941
               
               
               Cow position:chr10:28223191-28223391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:740-941
               
               
               Cow position:chr10:59417258-59417063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:740-949
               
               
               Cow position:chr10:11282191-11281978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:741-944
               
               
               Cow position:chr10:64394057-64394260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:742-937
               
               
               Cow position:chr10:58149192-58148999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):25, 119

               
               
               Conread position:742-949
               
               
               Cow position:chr10:10575296-10575492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:744-955
               
               
               Cow position:chr10:2985093-2984878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):122, 158

               
               
               Conread position:745-941
               
               
               Cow position:chr10:10829025-10829216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:746-941
               
               
               Cow position:chr10:19679081-19679280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):104, 136

               
               
               Conread position:746-957
               
               
               Cow position:chr10:43460069-43459865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:747-929
               
               
               Cow position:chr10:2708856-2709031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:748-957
               
               
               Cow position:chr10:64140315-64140104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):71, 81

               
               
               Conread position:755-949
               
               
               Cow position:chr10:19402902-19403096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):131, 20

               
               
               Conread position:756-937
               
               
               Cow position:chr10:64877717-64877536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:757-957
               
               
               Cow position:chr10:28843352-28843550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:758-941
               
               
               Cow position:chr10:24971331-24971156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:760-960
               
               
               Cow position:chr10:4330000-4329802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):112, 99

               
               
               Conread position:761-959
               
               
               Cow position:chr10:34552602-34552409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):58, 49

               
               
               Conread position:772-949
               
               
               Cow position:chr10:52169118-52168930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:773-929
               
               
               Cow position:chr10:8281274-8281430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:773-938
               
               
               Cow position:chr10:7309442-7309277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:773-941
               
               
               Cow position:chr10:41618471-41618305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:773-945
               
               
               Cow position:chr10:36856121-36855948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:773-949
               
               
               Cow position:chr10:21546172-21546349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):82, 136

               
               
               Conread position:773-950
               
               
               Cow position:chr10:21528798-21528975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):82, 136

               
               
               Conread position:773-955
               
               
               Cow position:chr10:8870825-8871005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):69, 74

               
               
               Conread position:773-956
               
               
               Cow position:chr10:35486428-35486244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):169, 0

               
               
               Conread position:773-959
               
               
               Cow position:chr10:15602171-15601986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):170, 0

               
               
               Conread position:773-960
               
               
               Cow position:chr10:22972995-22972808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):166, 98

               
               
               Conread position:774-941
               
               
               Cow position:chr10:14541882-14542047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:774-941
               
               
               Cow position:chr10:16641920-16641755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):44, 96

               
               
               Conread position:774-941
               
               
               Cow position:chr10:23340906-23341068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:774-941
               
               
               Cow position:chr10:30837025-30836857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:774-942
               
               
               Cow position:chr10:60251067-60250895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:774-948
               
               
               Cow position:chr10:9959227-9959400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:774-949
               
               
               Cow position:chr10:9797899-9797729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:774-949
               
               
               Cow position:chr10:17518836-17518662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:774-949
               
               
               Cow position:chr10:19503272-19503097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):60, 102

               
               
               Conread position:774-950
               
               
               Cow position:chr10:53945015-53945191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):60, 51

               
               
               Conread position:774-951
               
               
               Cow position:chr10:3985901-3986075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:774-951
               
               
               Cow position:chr10:50049916-50050083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):65, 71

               
               
               Conread position:774-955
               
               
               Cow position:chr10:14188599-14188424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):152, 44

               
               
               Conread position:774-959
               
               
               Cow position:chr10:38195965-38195780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):164, 44

               
               
               Conread position:774-960
               
               
               Cow position:chr10:2328199-2328385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):82, 16

               
               
               Conread position:775-931
               
               
               Cow position:chr10:17797713-17797553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:775-937
               
               
               Cow position:chr10:38329655-38329816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:775-941
               
               
               Cow position:chr10:18751463-18751301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:775-941
               
               
               Cow position:chr10:22593934-22594100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):156, 75

               
               
               Conread position:775-941
               
               
               Cow position:chr10:28571411-28571577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:775-941
               
               
               Cow position:chr10:34903488-34903648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:775-941
               
               
               Cow position:chr10:38386229-38386053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:775-941
               
               
               Cow position:chr10:47429838-47429998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:775-941
               
               
               Cow position:chr10:57095188-57095030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:775-945
               
               
               Cow position:chr10:18154097-18154270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:775-949
               
               
               Cow position:chr10:35978941-35979115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:775-949
               
               
               Cow position:chr10:58642299-58642125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:775-951
               
               
               Cow position:chr10:7844563-7844748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:775-951
               
               
               Cow position:chr10:34705289-34705463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:775-956
               
               
               Cow position:chr10:19709390-19709573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):80, 181

               
               
               Conread position:775-956
               
               
               Cow position:chr10:61146557-61146741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):83, 136

               
               
               Conread position:775-958
               
               
               Cow position:chr10:27136676-27136493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:777-937
               
               
               Cow position:chr10:40998871-40999028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):21, 81

               
               
               Conread position:777-941
               
               
               Cow position:chr10:25142522-25142361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):101, 17

               
               
               Conread position:777-954
               
               
               Cow position:chr10:47673303-47673119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):72, 163

               
               
               Conread position:780-937
               
               
               Cow position:chr10:15383344-15383501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:780-951
               
               
               Cow position:chr10:18155337-18155508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):161, 8

               
               
               Conread position:780-951
               
               
               Cow position:chr10:32649226-32649063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):156, 19

               
               
               Conread position:780-958
               
               
               Cow position:chr10:37258851-37258674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):73, 103

               
               
               Conread position:781-948
               
               
               Cow position:chr10:52152813-52152979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:781-955
               
               
               Cow position:chr10:40933776-40933954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):47, 145

               
               
               Conread position:782-929
               
               
               Cow position:chr10:30801338-30801485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:107
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:782-935
               
               
               Cow position:chr10:64438185-64438340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):58, 51

               
               
               Conread position:782-944
               
               
               Cow position:chr10:6718993-6719155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:782-949
               
               
               Cow position:chr10:48814408-48814245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:782-951
               
               
               Cow position:chr10:18849542-18849708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:782-951
               
               
               Cow position:chr10:42115379-42115541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):157, 66

               
               
               Conread position:782-951
               
               
               Cow position:chr10:49142488-49142321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:783-951
               
               
               Cow position:chr10:38799858-38800025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:784-941
               
               
               Cow position:chr10:25475554-25475707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:784-960
               
               
               Cow position:chr10:35017754-35017933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:787-937
               
               
               Cow position:chr10:24035996-24035848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:787-941
               
               
               Cow position:chr10:10104805-10104954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:788-941
               
               
               Cow position:chr10:3562643-3562492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):133, 60

               
               
               Conread position:788-941
               
               
               Cow position:chr10:57877496-57877650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:788-945
               
               
               Cow position:chr10:4711622-4711779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:789-950
               
               
               Cow position:chr10:5108829-5108668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:790-951
               
               
               Cow position:chr10:32829259-32829418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):57, 52

               
               
               Conread position:791-960
               
               
               Cow position:chr10:13350181-13350014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):57, 119

               
               
               Conread position:792-941
               
               
               Cow position:chr10:55235585-55235436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:109
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:793-958
               
               
               Cow position:chr10:24863077-24862912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):12, 148

               
               
               Conread position:794-951
               
               
               Cow position:chr10:49174302-49174143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):62, 66

               
               
               Conread position:796-960
               
               
               Cow position:chr10:54263255-54263419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:797-952
               
               
               Cow position:chr10:63758020-63757862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:799-951
               
               
               Cow position:chr10:32440236-32440387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):79, 67

               
               
               Conread position:802-949
               
               
               Cow position:chr10:35772765-35772618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):39, 51

               
               
               Conread position:802-958
               
               
               Cow position:chr10:38132996-38133156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:803-959
               
               
               Cow position:chr10:48567638-48567797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:811-949
               
               
               Cow position:chr10:13365021-13364883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:811-949
               
               
               Cow position:chr10:33122535-33122397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:811-951
               
               
               Cow position:chr10:17983929-17984069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:815-949
               
               
               Cow position:chr10:13363827-13363693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:818-949
               
               
               Cow position:chr10:6174252-6174123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:101
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:823-950
               
               
               Cow position:chr10:52364853-52364981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:523-945
               
               
               Cow position:chr11:68912902-68913330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 48

               
               
               Conread position:535-867
               
               
               Cow position:chr11:67747070-67747390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:226
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):142, 20

               
               
               Conread position:535-951
               
               
               Cow position:chr11:34646369-34646788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 92

               
               
               Conread position:537-941
               
               
               Cow position:chr11:35580044-35580444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 18

               
               
               Conread position:539-872
               
               
               Cow position:chr11:40573548-40573220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):10, 47

               
               
               Conread position:539-959
               
               
               Cow position:chr11:45742168-45742569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 20

               
               
               Conread position:547-875
               
               
               Cow position:chr11:63847640-63847963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):46, 7

               
               
               Conread position:547-930
               
               
               Cow position:chr11:75177679-75178070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:257
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):47, 7

               
               
               Conread position:547-949
               
               
               Cow position:chr11:63518805-63519184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:263
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):73, 7

               
               
               Conread position:547-952
               
               
               Cow position:chr11:26067389-26066995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:269
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):61, 7

               
               
               Conread position:547-956
               
               
               Cow position:chr11:83397695-83398106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 27

               
               
               Conread position:549-941
               
               
               Cow position:chr11:37804760-37804369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 13

               
               
               Conread position:549-948
               
               
               Cow position:chr11:30708293-30708694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 19

               
               
               Conread position:557-761
               
               
               Cow position:chr11:10076569-10076773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):30, 5

               
               
               Conread position:557-950
               
               
               Cow position:chr11:26144291-26143907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 15

               
               
               Conread position:561-839
               
               
               Cow position:chr11:64638730-64638443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):7, 155

               
               
               Conread position:562-936
               
               
               Cow position:chr11:21852494-21852138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):46, 26

               
               
               Conread position:562-949
               
               
               Cow position:chr11:4323167-4323557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:264
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):13, 7

               
               
               Conread position:566-736
               
               
               Cow position:chr11:9837288-9837118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):60, 19

               
               
               Conread position:566-810
               
               
               Cow position:chr11:30120853-30120608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):136, 58

               
               
               Conread position:566-818
               
               
               Cow position:chr11:53511892-53512144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):9, 186

               
               
               Conread position:566-854
               
               
               Cow position:chr11:18572612-18572898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):35, 60

               
               
               Conread position:566-861
               
               
               Cow position:chr11:68905261-68904973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):248, 61

               
               
               Conread position:566-874
               
               
               Cow position:chr11:1071283-1070973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):11, 60

               
               
               Conread position:566-895
               
               
               Cow position:chr11:33414042-33414375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):27, 131

               
               
               Conread position:566-941
               
               
               Cow position:chr11:20238482-20238859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 59

               
               
               Conread position:566-941
               
               
               Cow position:chr11:65762788-65762402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:265
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):26, 58

               
               
               Conread position:566-946
               
               
               Cow position:chr11:41215552-41215921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 111

               
               
               Conread position:568-846
               
               
               Cow position:chr11:77128474-77128750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):134, 58

               
               
               Conread position:569-760
               
               
               Cow position:chr11:81174705-81174890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):23, 12

               
               
               Conread position:569-842
               
               
               Cow position:chr11:23128728-23128454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):28, 55

               
               
               Conread position:569-941
               
               
               Cow position:chr11:1625403-1625039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:255
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):20, 59

               
               
               Conread position:569-951
               
               
               Cow position:chr11:42836145-42835759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:260
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):58, 95

               
               
               Conread position:569-959
               
               
               Cow position:chr11:33287138-33286753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:261
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):21, 98

               
               
               Conread position:571-840
               
               
               Cow position:chr11:56654366-56654639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):16, 24

               
               
               Conread position:571-903
               
               
               Cow position:chr11:17493295-17493628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):8, 53

               
               
               Conread position:572-949
               
               
               Cow position:chr11:63434234-63433872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:251
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):150, 18

               
               
               Conread position:572-960
               
               
               Cow position:chr11:67345826-67345456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:266
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):51, 34

               
               
               Conread position:574-793
               
               
               Cow position:chr11:27386527-27386302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):19, 147

               
               
               Conread position:574-819
               
               
               Cow position:chr11:40258589-40258349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):51, 14

               
               
               Conread position:574-848
               
               
               Cow position:chr11:71501315-71501041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):45, 127

               
               
               Conread position:574-941
               
               
               Cow position:chr11:36286515-36286887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:256
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):24, 135

               
               
               Conread position:574-944
               
               
               Cow position:chr11:42884958-42884599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):26, 97

               
               
               Conread position:574-948
               
               
               Cow position:chr11:40792881-40792504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:264
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):77, 19

               
               
               Conread position:574-952
               
               
               Cow position:chr11:4436145-4436528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 117

               
               
               Conread position:574-959
               
               
               Cow position:chr11:76369702-76369324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:255
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):23, 52

               
               
               Conread position:574-960
               
               
               Cow position:chr11:40458933-40459307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:270
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):46, 19

               
               
               Conread position:575-869
               
               
               Cow position:chr11:38577952-38577666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):44, 94

               
               
               Conread position:576-751
               
               
               Cow position:chr11:3175207-3175377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:576-766
               
               
               Cow position:chr11:33468534-33468720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):146, 119

               
               
               Conread position:576-820
               
               
               Cow position:chr11:32378012-32378251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):146, 11

               
               
               Conread position:576-875
               
               
               Cow position:chr11:59702309-59702610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):133, 47

               
               
               Conread position:576-900
               
               
               Cow position:chr11:30934249-30934559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):150, 13

               
               
               Conread position:576-937
               
               
               Cow position:chr11:35723805-35724149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):175, 15

               
               
               Conread position:576-941
               
               
               Cow position:chr11:2788202-2788578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:257
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):32, 9

               
               
               Conread position:576-941
               
               
               Cow position:chr11:6234058-6233695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 59

               
               
               Conread position:576-941
               
               
               Cow position:chr11:47639202-47638841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):122, 13

               
               
               Conread position:576-945
               
               
               Cow position:chr11:23272176-23271819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:576-949
               
               
               Cow position:chr11:27746747-27747109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:253
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):98, 47

               
               
               Conread position:576-951
               
               
               Cow position:chr11:30165331-30165704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 123

               
               
               Conread position:576-957
               
               
               Cow position:chr11:65058786-65058413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):51, 15

               
               
               Conread position:576-959
               
               
               Cow position:chr11:5961139-5961506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:257
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):43, 15

               
               
               Conread position:576-960
               
               
               Cow position:chr11:51687900-51687534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:255
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):175, 15

               
               
               Conread position:577-700
               
               
               Cow position:chr11:41577191-41577068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):11, 47

               
               
               Conread position:577-750
               
               
               Cow position:chr11:53130633-53130807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):11, 146

               
               
               Conread position:577-805
               
               
               Cow position:chr11:30596810-30597042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:577-813
               
               
               Cow position:chr11:18341213-18340984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):15, 50

               
               
               Conread position:577-842
               
               
               Cow position:chr11:34829957-34829700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):15, 37

               
               
               Conread position:577-846
               
               
               Cow position:chr11:49934912-49934641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):130, 26

               
               
               Conread position:577-855
               
               
               Cow position:chr11:8148074-8147800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):15, 48

               
               
               Conread position:577-875
               
               
               Cow position:chr11:23138239-23137936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):15, 114

               
               
               Conread position:577-907
               
               
               Cow position:chr11:3393386-3393065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):11, 31

               
               
               Conread position:577-940
               
               
               Cow position:chr11:4207135-4207493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:249
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):15, 47

               
               
               Conread position:577-941
               
               
               Cow position:chr11:45277325-45276965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):18, 121

               
               
               Conread position:577-944
               
               
               Cow position:chr11:78381229-78380883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 11

               
               
               Conread position:577-945
               
               
               Cow position:chr11:25791870-25791506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 99

               
               
               Conread position:577-949
               
               
               Cow position:chr11:21894328-21893957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:272
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):44, 11

               
               
               Conread position:577-949
               
               
               Cow position:chr11:81138047-81138403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:577-950
               
               
               Cow position:chr11:30764307-30764684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 15

               
               
               Conread position:577-950
               
               
               Cow position:chr11:70950707-70951059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:254
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):49, 8

               
               
               Conread position:577-951
               
               
               Cow position:chr11:64029435-64029073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:254
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):9, 74

               
               
               Conread position:577-959
               
               
               Cow position:chr11:36182510-36182893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 20

               
               
               Conread position:577-960
               
               
               Cow position:chr11:66733657-66734032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:260
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):34, 70

               
               
               Conread position:578-736
               
               
               Cow position:chr11:43914036-43914195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):41, 130

               
               
               Conread position:578-790
               
               
               Cow position:chr11:21428168-21427959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):144, 18

               
               
               Conread position:578-855
               
               
               Cow position:chr11:42358943-42359218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):9, 48

               
               
               Conread position:578-870
               
               
               Cow position:chr11:16907218-16906937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):251, 46

               
               
               Conread position:578-903
               
               
               Cow position:chr11:71868785-71868458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:230
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):14, 136

               
               
               Conread position:578-941
               
               
               Cow position:chr11:45282751-45283110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:252
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):8, 95

               
               
               Conread position:578-959
               
               
               Cow position:chr11:2083962-2084346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 7

               
               
               Conread position:578-959
               
               
               Cow position:chr11:76889874-76890244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:265
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):145, 13

               
               
               Conread position:579-948
               
               
               Cow position:chr11:66041096-66041462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:250
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):17, 288

               
               
               Conread position:579-959
               
               
               Cow position:chr11:36194122-36194495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:263
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):41, 12

               
               
               Conread position:580-719
               
               
               Cow position:chr11:29786781-29786641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):13, 29

               
               
               Conread position:580-856
               
               
               Cow position:chr11:20602054-20602326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):46, 85

               
               
               Conread position:580-949
               
               
               Cow position:chr11:6245148-6245512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 115

               
               
               Conread position:581-752
               
               
               Cow position:chr11:48042213-48042039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):11, 139

               
               
               Conread position:581-767
               
               
               Cow position:chr11:16251419-16251233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):124, 43

               
               
               Conread position:581-796
               
               
               Cow position:chr11:2811902-2811690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):7, 46

               
               
               Conread position:581-847
               
               
               Cow position:chr11:69810733-69810994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:581-855
               
               
               Cow position:chr11:62151059-62150795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):16, 44

               
               
               Conread position:581-860
               
               
               Cow position:chr11:36799473-36799204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:581-875
               
               
               Cow position:chr11:42044161-42043876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):11, 53

               
               
               Conread position:581-929
               
               
               Cow position:chr11:60302132-60301806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:237
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):11, 38

               
               
               Conread position:581-936
               
               
               Cow position:chr11:8988401-8988052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:259
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):6, 44

               
               
               Conread position:581-937
               
               
               Cow position:chr11:30639119-30638773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 66

               
               
               Conread position:581-939
               
               
               Cow position:chr11:68841027-68841390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:233
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):23, 118

               
               
               Conread position:581-941
               
               
               Cow position:chr11:17831392-17831023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):11, 64

               
               
               Conread position:581-941
               
               
               Cow position:chr11:49152778-49153123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:247
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):11, 70

               
               
               Conread position:581-941
               
               
               Cow position:chr11:74316540-74316889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):124, 42

               
               
               Conread position:581-949
               
               
               Cow position:chr11:81300783-81300430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):5, 49

               
               
               Conread position:581-951
               
               
               Cow position:chr11:77758931-77758566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:261
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):11, 32

               
               
               Conread position:581-954
               
               
               Cow position:chr11:29960133-29960488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:258
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):122, 42

               
               
               Conread position:581-954
               
               
               Cow position:chr11:42083305-42083649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):141, 65

               
               
               Conread position:581-955
               
               
               Cow position:chr11:70484032-70483653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):11, 44

               
               
               Conread position:581-957
               
               
               Cow position:chr11:19592168-19591796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 142

               
               
               Conread position:581-959
               
               
               Cow position:chr11:5328620-5328986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:240
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):163, 20

               
               
               Conread position:581-959
               
               
               Cow position:chr11:46329327-46329702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:258
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):11, 54

               
               
               Conread position:582-875
               
               
               Cow position:chr11:70609614-70609917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):141, 133

               
               
               Conread position:582-941
               
               
               Cow position:chr11:53778443-53778803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):287, 139

               
               
               Conread position:583-848
               
               
               Cow position:chr11:40479025-40478761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):33, 127

               
               
               Conread position:584-803
               
               
               Cow position:chr11:37347307-37347519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):57, 126

               
               
               Conread position:584-880
               
               
               Cow position:chr11:47544961-47545256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):121, 39

               
               
               Conread position:585-724
               
               
               Cow position:chr11:29266372-29266511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:585-742
               
               
               Cow position:chr11:33364176-33364329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):137, 81

               
               
               Conread position:585-842
               
               
               Cow position:chr11:17660926-17661169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):136, 38

               
               
               Conread position:585-860
               
               
               Cow position:chr11:33310801-33311081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):44, 101

               
               
               Conread position:585-909
               
               
               Cow position:chr11:19233118-19232799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):72, 8

               
               
               Conread position:585-924
               
               
               Cow position:chr11:81406327-81406001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:240
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):145, 39

               
               
               Conread position:585-929
               
               
               Cow position:chr11:28993902-28993577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:245
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):11, 41

               
               
               Conread position:585-940
               
               
               Cow position:chr11:1849330-1848983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:235
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):137, 34

               
               
               Conread position:585-941
               
               
               Cow position:chr11:2917754-2917410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:245
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):138, 38

               
               
               Conread position:585-941
               
               
               Cow position:chr11:10687053-10686703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:233
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):38, 59

               
               
               Conread position:585-941
               
               
               Cow position:chr11:65157580-65157222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:241
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):59, 38

               
               
               Conread position:585-941
               
               
               Cow position:chr11:69844201-69844543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):138, 6

               
               
               Conread position:585-949
               
               
               Cow position:chr11:20684745-20684379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 132

               
               
               Conread position:585-950
               
               
               Cow position:chr11:6400238-6399872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:257
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):89, 16

               
               
               Conread position:585-951
               
               
               Cow position:chr11:61454700-61454309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:270
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):42, 97

               
               
               Conread position:585-958
               
               
               Cow position:chr11:33348354-33347999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 114

               
               
               Conread position:586-929
               
               
               Cow position:chr11:73354222-73353896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:586-941
               
               
               Cow position:chr11:83043531-83043184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 37

               
               
               Conread position:588-757
               
               
               Cow position:chr11:21830518-21830347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):112, 36

               
               
               Conread position:588-941
               
               
               Cow position:chr11:44222725-44223064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:246
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):120, 35

               
               
               Conread position:589-867
               
               
               Cow position:chr11:83230555-83230290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):136, 34

               
               
               Conread position:589-937
               
               
               Cow position:chr11:48544272-48544615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):69, 34

               
               
               Conread position:590-791
               
               
               Cow position:chr11:30543454-30543654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):36, 107

               
               
               Conread position:590-871
               
               
               Cow position:chr11:83925882-83926159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):13, 120

               
               
               Conread position:590-940
               
               
               Cow position:chr11:259336-258991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:245
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):107, 33

               
               
               Conread position:590-941
               
               
               Cow position:chr11:32693635-32693311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):286, 80

               
               
               Conread position:591-709
               
               
               Cow position:chr11:84924257-84924139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):111, 79

               
               
               Conread position:591-715
               
               
               Cow position:chr11:25165280-25165400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-736
               
               
               Cow position:chr11:75748271-75748414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):131, 51

               
               
               Conread position:591-738
               
               
               Cow position:chr11:63499486-63499342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):37, 116

               
               
               Conread position:591-743
               
               
               Cow position:chr11:81605465-81605616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):28, 115

               
               
               Conread position:591-752
               
               
               Cow position:chr11:36301240-36301082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):36, 105

               
               
               Conread position:591-752
               
               
               Cow position:chr11:71455628-71455788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):19, 104

               
               
               Conread position:591-753
               
               
               Cow position:chr11:8105619-8105782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):116, 93

               
               
               Conread position:591-753
               
               
               Cow position:chr11:47586511-47586353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:591-753
               
               
               Cow position:chr11:48697284-48697445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):28, 81

               
               
               Conread position:591-753
               
               
               Cow position:chr11:63516664-63516824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-761
               
               
               Cow position:chr11:17112794-17112627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):28, 58

               
               
               Conread position:591-761
               
               
               Cow position:chr11:36672210-36672039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):33, 120

               
               
               Conread position:591-761
               
               
               Cow position:chr11:83196336-83196502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):131, 33

               
               
               Conread position:591-794
               
               
               Cow position:chr11:56349178-56348985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:591-794
               
               
               Cow position:chr11:67136602-67136393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):40, 61

               
               
               Conread position:591-797
               
               
               Cow position:chr11:42793135-42792932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:591-819
               
               
               Cow position:chr11:24937502-24937728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):132, 31

               
               
               Conread position:591-819
               
               
               Cow position:chr11:38874566-38874339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):134, 113

               
               
               Conread position:591-819
               
               
               Cow position:chr11:70273138-70273369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):30, 114

               
               
               Conread position:591-827
               
               
               Cow position:chr11:2092177-2092405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-829
               
               
               Cow position:chr11:45898215-45897977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):131, 34

               
               
               Conread position:591-831
               
               
               Cow position:chr11:41176112-41175875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):131, 33

               
               
               Conread position:591-842
               
               
               Cow position:chr11:16342402-16342143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):63, 31

               
               
               Conread position:591-842
               
               
               Cow position:chr11:33341308-33341059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):131, 27

               
               
               Conread position:591-842
               
               
               Cow position:chr11:50778211-50778453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-847
               
               
               Cow position:chr11:58588185-58588435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):133, 33

               
               
               Conread position:591-848
               
               
               Cow position:chr11:5031937-5031684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:591-848
               
               
               Cow position:chr11:73512594-73512352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):177, 55

               
               
               Conread position:591-849
               
               
               Cow position:chr11:36986802-36987042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):28, 56

               
               
               Conread position:591-853
               
               
               Cow position:chr11:1362640-1362371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:591-854
               
               
               Cow position:chr11:26483551-26483803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):135, 115

               
               
               Conread position:591-855
               
               
               Cow position:chr11:34032365-34032100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):223, 115

               
               
               Conread position:591-855
               
               
               Cow position:chr11:43897978-43898237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-855
               
               
               Cow position:chr11:76114492-76114741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-857
               
               
               Cow position:chr11:63482589-63482330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):131, 113

               
               
               Conread position:591-859
               
               
               Cow position:chr11:77118546-77118802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):35, 108

               
               
               Conread position:591-860
               
               
               Cow position:chr11:70086162-70086436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:201
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):28, 215

               
               
               Conread position:591-860
               
               
               Cow position:chr11:80530203-80530462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):30, 115

               
               
               Conread position:591-863
               
               
               Cow position:chr11:1157482-1157749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):79, 105

               
               
               Conread position:591-866
               
               
               Cow position:chr11:377808-377533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:199
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):35, 126

               
               
               Conread position:591-866
               
               
               Cow position:chr11:2932990-2933256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):21, 67

               
               
               Conread position:591-866
               
               
               Cow position:chr11:44234191-44234463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):112, 32

               
               
               Conread position:591-867
               
               
               Cow position:chr11:30924987-30925265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):113, 55

               
               
               Conread position:591-870
               
               
               Cow position:chr11:7590031-7590302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):63, 32

               
               
               Conread position:591-870
               
               
               Cow position:chr11:69119140-69119406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):129, 32

               
               
               Conread position:591-872
               
               
               Cow position:chr11:41812072-41811799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):35, 49

               
               
               Conread position:591-872
               
               
               Cow position:chr11:62155462-62155752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:212
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):28, 269

               
               
               Conread position:591-873
               
               
               Cow position:chr11:30954836-30955117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):38, 27

               
               
               Conread position:591-875
               
               
               Cow position:chr11:28643918-28644206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):14, 36

               
               
               Conread position:591-875
               
               
               Cow position:chr11:35684657-35684383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):241, 32

               
               
               Conread position:591-875
               
               
               Cow position:chr11:36848764-36849036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):133, 105

               
               
               Conread position:591-875
               
               
               Cow position:chr11:48272035-48272319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):112, 32

               
               
               Conread position:591-875
               
               
               Cow position:chr11:61958909-61958626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:208
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):32, 94

               
               
               Conread position:591-875
               
               
               Cow position:chr11:63909820-63909548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):143, 51

               
               
               Conread position:591-882
               
               
               Cow position:chr11:66425050-66424756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):32, 117

               
               
               Conread position:591-889
               
               
               Cow position:chr11:23586475-23586772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):126, 32

               
               
               Conread position:591-892
               
               
               Cow position:chr11:30879520-30879804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):131, 69

               
               
               Conread position:591-896
               
               
               Cow position:chr11:34113103-34113400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):172, 33

               
               
               Conread position:591-896
               
               
               Cow position:chr11:67804589-67804883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):75, 98

               
               
               Conread position:591-901
               
               
               Cow position:chr11:18244101-18243802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):132, 95

               
               
               Conread position:591-903
               
               
               Cow position:chr11:68207001-68206701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:215
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):134, 33

               
               
               Conread position:591-911
               
               
               Cow position:chr11:11469797-11469500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):132, 21

               
               
               Conread position:591-913
               
               
               Cow position:chr11:87155355-87155676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):36, 90

               
               
               Conread position:591-914
               
               
               Cow position:chr11:59902728-59903048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:591-919
               
               
               Cow position:chr11:38670520-38670851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):106, 134

               
               
               Conread position:591-925
               
               
               Cow position:chr11:34121038-34121362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:226
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):113, 32

               
               
               Conread position:591-925
               
               
               Cow position:chr11:83066332-83066659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:237
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):107, 32

               
               
               Conread position:591-929
               
               
               Cow position:chr11:8525273-8524947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-929
               
               
               Cow position:chr11:36981402-36981736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:238
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):35, 89

               
               
               Conread position:591-930
               
               
               Cow position:chr11:44636920-44636583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):137, 32

               
               
               Conread position:591-930
               
               
               Cow position:chr11:48474540-48474881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:235
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):273, 107

               
               
               Conread position:591-932
               
               
               Cow position:chr11:34145076-34144745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 34

               
               
               Conread position:591-933
               
               
               Cow position:chr11:2907681-2907359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:242
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):95, 32

               
               
               Conread position:591-933
               
               
               Cow position:chr11:3702788-3703126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):35, 16

               
               
               Conread position:591-933
               
               
               Cow position:chr11:22978027-22977707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):232, 33

               
               
               Conread position:591-935
               
               
               Cow position:chr11:45872482-45872132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 121

               
               
               Conread position:591-935
               
               
               Cow position:chr11:81913882-81913545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:230
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):14, 21

               
               
               Conread position:591-936
               
               
               Cow position:chr11:65607853-65607513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:246
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):159, 32

               
               
               Conread position:591-937
               
               
               Cow position:chr11:11125500-11125844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 34

               
               
               Conread position:591-937
               
               
               Cow position:chr11:21728431-21728110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:236
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):121, 32

               
               
               Conread position:591-937
               
               
               Cow position:chr11:25620559-25620211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 57

               
               
               Conread position:591-937
               
               
               Cow position:chr11:30209983-30209644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 25

               
               
               Conread position:591-937
               
               
               Cow position:chr11:40818802-40818454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:245
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):32, 271

               
               
               Conread position:591-937
               
               
               Cow position:chr11:85723537-85723873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 81

               
               
               Conread position:591-938
               
               
               Cow position:chr11:81135324-81134989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:591-939
               
               
               Cow position:chr11:11558005-11558349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:233
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):123, 32

               
               
               Conread position:591-940
               
               
               Cow position:chr11:65826901-65826572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):177, 16

               
               
               Conread position:591-941
               
               
               Cow position:chr11:4732179-4732527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:591-941
               
               
               Cow position:chr11:11646907-11647280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:256
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):105, 28

               
               
               Conread position:591-941
               
               
               Cow position:chr11:13499850-13500193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 99

               
               
               Conread position:591-941
               
               
               Cow position:chr11:17860317-17859970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:248
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):139, 105

               
               
               Conread position:591-941
               
               
               Cow position:chr11:18509181-18508845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 114

               
               
               Conread position:591-941
               
               
               Cow position:chr11:18698715-18699053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:236
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):135, 33

               
               
               Conread position:591-941
               
               
               Cow position:chr11:24438387-24438036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):126, 72

               
               
               Conread position:591-941
               
               
               Cow position:chr11:34616105-34616444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:239
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):35, 81

               
               
               Conread position:591-941
               
               
               Cow position:chr11:35153987-35153637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:246
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr11:42016798-42016456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 119

               
               
               Conread position:591-941
               
               
               Cow position:chr11:44031840-44032189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:251
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):106, 27

               
               
               Conread position:591-941
               
               
               Cow position:chr11:47899117-47899433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:243
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-941
               
               
               Cow position:chr11:48295870-48296208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr11:50152978-50152630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 33

               
               
               Conread position:591-941
               
               
               Cow position:chr11:55333749-55334102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:248
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):139, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr11:67600620-67600961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 33

               
               
               Conread position:591-941
               
               
               Cow position:chr11:68770198-68770546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:217
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):29, 116

               
               
               Conread position:591-941
               
               
               Cow position:chr11:74380032-74380375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):35, 68

               
               
               Conread position:591-944
               
               
               Cow position:chr11:79728832-79728486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 104

               
               
               Conread position:591-945
               
               
               Cow position:chr11:8545175-8544830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 50

               
               
               Conread position:591-945
               
               
               Cow position:chr11:9221886-9221535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):131, 33

               
               
               Conread position:591-945
               
               
               Cow position:chr11:19247358-19247018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 16

               
               
               Conread position:591-945
               
               
               Cow position:chr11:27932106-27932489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:266
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):30, 61

               
               
               Conread position:591-946
               
               
               Cow position:chr11:82940784-82940442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 55

               
               
               Conread position:591-947
               
               
               Cow position:chr11:57724988-57724634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:233
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):36, 106

               
               
               Conread position:591-948
               
               
               Cow position:chr11:9270890-9270548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:248
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):35, 118

               
               
               Conread position:591-948
               
               
               Cow position:chr11:80923486-80923136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-949
               
               
               Cow position:chr11:1380519-1380868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 22

               
               
               Conread position:591-949
               
               
               Cow position:chr11:3726123-3726481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):35, 105

               
               
               Conread position:591-949
               
               
               Cow position:chr11:5075385-5075039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):33, 82

               
               
               Conread position:591-949
               
               
               Cow position:chr11:15503941-15504300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:246
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):35, 232

               
               
               Conread position:591-949
               
               
               Cow position:chr11:33293950-33293588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):31, 130

               
               
               Conread position:591-949
               
               
               Cow position:chr11:45619187-45619541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):30, 55

               
               
               Conread position:591-949
               
               
               Cow position:chr11:56728787-56729126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):35, 54

               
               
               Conread position:591-949
               
               
               Cow position:chr11:80756946-80756599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):35, 117

               
               
               Conread position:591-949
               
               
               Cow position:chr11:83357231-83357587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):29, 55

               
               
               Conread position:591-950
               
               
               Cow position:chr11:10095184-10095535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:591-951
               
               
               Cow position:chr11:41021-41363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):126, 32

               
               
               Conread position:591-951
               
               
               Cow position:chr11:46748026-46747666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:243
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):125, 33

               
               
               Conread position:591-951
               
               
               Cow position:chr11:52297383-52297028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-951
               
               
               Cow position:chr11:64044079-64044410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:249
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:591-951
               
               
               Cow position:chr11:71493020-71492671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:246
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):16, 116

               
               
               Conread position:591-951
               
               
               Cow position:chr11:80556058-80556412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:251
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):106, 32

               
               
               Conread position:591-956
               
               
               Cow position:chr11:17227808-17227453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):78, 32

               
               
               Conread position:591-956
               
               
               Cow position:chr11:77750934-77750563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:251
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):108, 33

               
               
               Conread position:591-957
               
               
               Cow position:chr11:27405228-27404872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:251
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-958
               
               
               Cow position:chr11:13191060-13191440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):36, 106

               
               
               Conread position:591-958
               
               
               Cow position:chr11:13592574-13592940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 59

               
               
               Conread position:591-958
               
               
               Cow position:chr11:27913111-27913484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:250
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):38, 71

               
               
               Conread position:591-958
               
               
               Cow position:chr11:34962898-34963269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):16, 35

               
               
               Conread position:591-958
               
               
               Cow position:chr11:53773513-53773883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:591-959
               
               
               Cow position:chr11:17278828-17278481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:247
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):35, 74

               
               
               Conread position:591-959
               
               
               Cow position:chr11:20761684-20762053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:255
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-959
               
               
               Cow position:chr11:32595307-32595660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):35, 54

               
               
               Conread position:591-959
               
               
               Cow position:chr11:42919390-42919015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):35, 57

               
               
               Conread position:591-959
               
               
               Cow position:chr11:62239584-62239942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:252
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-959
               
               
               Cow position:chr11:62620221-62620578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 32

               
               
               Conread position:591-959
               
               
               Cow position:chr11:84385800-84385436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 116

               
               
               Conread position:591-960
               
               
               Cow position:chr11:15772882-15772512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 116

               
               
               Conread position:591-960
               
               
               Cow position:chr11:19593659-19594021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:248
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):35, 53

               
               
               Conread position:591-960
               
               
               Cow position:chr11:36112259-36112611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:260
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):27, 56

               
               
               Conread position:592-718
               
               
               Cow position:chr11:74929621-74929750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:592-752
               
               
               Cow position:chr11:86894514-86894678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:592-753
               
               
               Cow position:chr11:28191906-28192071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):34, 134

               
               
               Conread position:592-759
               
               
               Cow position:chr11:41239433-41239266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):113, 98

               
               
               Conread position:592-761
               
               
               Cow position:chr11:18372917-18373078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):34, 53

               
               
               Conread position:592-761
               
               
               Cow position:chr11:57170990-57170825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):130, 5

               
               
               Conread position:592-765
               
               
               Cow position:chr11:62979319-62979499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):32, 123

               
               
               Conread position:592-797
               
               
               Cow position:chr11:22932136-22931930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):25, 55

               
               
               Conread position:592-807
               
               
               Cow position:chr11:80788074-80787856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):33, 121

               
               
               Conread position:592-810
               
               
               Cow position:chr11:18591593-18591379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):131, 31

               
               
               Conread position:592-812
               
               
               Cow position:chr11:64904835-64905054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):155, 106

               
               
               Conread position:592-820
               
               
               Cow position:chr11:49231715-49231937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):132, 50

               
               
               Conread position:592-824
               
               
               Cow position:chr11:10620484-10620260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):130, 19

               
               
               Conread position:592-827
               
               
               Cow position:chr11:7497807-7497576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):27, 116

               
               
               Conread position:592-840
               
               
               Cow position:chr11:60143460-60143219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:179
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):120, 11

               
               
               Conread position:592-844
               
               
               Cow position:chr11:3833513-3833275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):240, 23

               
               
               Conread position:592-855
               
               
               Cow position:chr11:18588739-18588487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):34, 53

               
               
               Conread position:592-860
               
               
               Cow position:chr11:17495905-17495638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):34, 77

               
               
               Conread position:592-860
               
               
               Cow position:chr11:32749950-32750214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):34, 105

               
               
               Conread position:592-875
               
               
               Cow position:chr11:56518471-56518194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:186
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):17, 33

               
               
               Conread position:592-927
               
               
               Cow position:chr11:4674609-4674275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):76, 119

               
               
               Conread position:592-930
               
               
               Cow position:chr11:19487639-19487307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):105, 55

               
               
               Conread position:592-933
               
               
               Cow position:chr11:13043307-13042973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 63

               
               
               Conread position:592-933
               
               
               Cow position:chr11:77705599-77705925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):109, 28

               
               
               Conread position:592-935
               
               
               Cow position:chr11:14470208-14470538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:234
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):110, 92

               
               
               Conread position:592-935
               
               
               Cow position:chr11:55761718-55762033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:232
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):130, 32

               
               
               Conread position:592-937
               
               
               Cow position:chr11:6580655-6581013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:239
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):127, 116

               
               
               Conread position:592-937
               
               
               Cow position:chr11:72375847-72375487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):107, 35

               
               
               Conread position:592-939
               
               
               Cow position:chr11:45646756-45646416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:242
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):131, 31

               
               
               Conread position:592-941
               
               
               Cow position:chr11:8495878-8496216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:239
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):35, 116

               
               
               Conread position:592-941
               
               
               Cow position:chr11:15016880-15017241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):125, 31

               
               
               Conread position:592-941
               
               
               Cow position:chr11:66289398-66289736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):27, 98

               
               
               Conread position:592-942
               
               
               Cow position:chr11:30830777-30830439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 37

               
               
               Conread position:592-943
               
               
               Cow position:chr11:66572663-66572307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:241
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):106, 124

               
               
               Conread position:592-945
               
               
               Cow position:chr11:15285776-15285437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):37, 53

               
               
               Conread position:592-947
               
               
               Cow position:chr11:41986206-41985859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 59

               
               
               Conread position:592-947
               
               
               Cow position:chr11:77745417-77745058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 11

               
               
               Conread position:592-948
               
               
               Cow position:chr11:36940762-36940404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:245
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):31, 108

               
               
               Conread position:592-949
               
               
               Cow position:chr11:287494-287138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):34, 52

               
               
               Conread position:592-950
               
               
               Cow position:chr11:30720935-30721294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):34, 15

               
               
               Conread position:592-950
               
               
               Cow position:chr11:66896961-66896608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):36, 105

               
               
               Conread position:592-951
               
               
               Cow position:chr11:7873986-7874334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):342, 49

               
               
               Conread position:592-951
               
               
               Cow position:chr11:31413291-31413650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:236
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):162, 129

               
               
               Conread position:592-951
               
               
               Cow position:chr11:31525705-31526073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:592-951
               
               
               Cow position:chr11:33349860-33349509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:248
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):34, 104

               
               
               Conread position:592-951
               
               
               Cow position:chr11:45700315-45700685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):35, 130

               
               
               Conread position:592-951
               
               
               Cow position:chr11:61203004-61203365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):31, 53

               
               
               Conread position:592-955
               
               
               Cow position:chr11:27248331-27248685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:243
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):133, 39

               
               
               Conread position:592-955
               
               
               Cow position:chr11:32421645-32421287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:237
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):78, 93

               
               
               Conread position:592-958
               
               
               Cow position:chr11:17889888-17889528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:253
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):32, 80

               
               
               Conread position:592-959
               
               
               Cow position:chr11:14649475-14649110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):27, 10

               
               
               Conread position:592-959
               
               
               Cow position:chr11:41134227-41133879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:250
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:593-711
               
               
               Cow position:chr11:62808810-62808692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:93
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:593-840
               
               
               Cow position:chr11:44642447-44642208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):102, 30

               
               
               Conread position:593-855
               
               
               Cow position:chr11:36658978-36658725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):103, 30

               
               
               Conread position:593-863
               
               
               Cow position:chr11:3233923-3234182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):33, 74

               
               
               Conread position:593-866
               
               
               Cow position:chr11:23232674-23232410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):96, 9

               
               
               Conread position:593-878
               
               
               Cow position:chr11:54334174-54334450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):32, 12

               
               
               Conread position:593-878
               
               
               Cow position:chr11:59872771-59873051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):131, 30

               
               
               Conread position:593-929
               
               
               Cow position:chr11:77319252-77319583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):129, 31

               
               
               Conread position:593-930
               
               
               Cow position:chr11:70459410-70459729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):137, 39

               
               
               Conread position:593-937
               
               
               Cow position:chr11:49148876-49149225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):26, 92

               
               
               Conread position:593-941
               
               
               Cow position:chr11:52381034-52380689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 30

               
               
               Conread position:593-941
               
               
               Cow position:chr11:68910011-68909671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 77

               
               
               Conread position:593-947
               
               
               Cow position:chr11:45434926-45435265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:249
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):129, 30

               
               
               Conread position:593-949
               
               
               Cow position:chr11:3720094-3720446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):33, 52

               
               
               Conread position:593-949
               
               
               Cow position:chr11:36058644-36058989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):33, 48

               
               
               Conread position:593-949
               
               
               Cow position:chr11:38236083-38236436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:251
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):98, 31

               
               
               Conread position:593-951
               
               
               Cow position:chr11:75480189-75479830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:256
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):77, 82

               
               
               Conread position:594-751
               
               
               Cow position:chr11:59156038-59155882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):129, 29

               
               
               Conread position:594-852
               
               
               Cow position:chr11:10213721-10213473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):131, 10

               
               
               Conread position:594-860
               
               
               Cow position:chr11:45631921-45631662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):128, 29

               
               
               Conread position:594-875
               
               
               Cow position:chr11:36238624-36238897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:196
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):262, 29

               
               
               Conread position:594-937
               
               
               Cow position:chr11:21844292-21843960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 29

               
               
               Conread position:594-948
               
               
               Cow position:chr11:9463672-9464027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:238
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):32, 103

               
               
               Conread position:594-949
               
               
               Cow position:chr11:7458446-7458089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:245
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):25, 113

               
               
               Conread position:594-949
               
               
               Cow position:chr11:67931653-67931300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:247
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):31, 105

               
               
               Conread position:594-949
               
               
               Cow position:chr11:70382852-70382498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:246
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):32, 54

               
               
               Conread position:594-950
               
               
               Cow position:chr11:3175531-3175860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:594-951
               
               
               Cow position:chr11:70600980-70600634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 125

               
               
               Conread position:594-955
               
               
               Cow position:chr11:71390723-71390375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:250
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):117, 35

               
               
               Conread position:594-958
               
               
               Cow position:chr11:48649820-48650187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:262
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):14, 31

               
               
               Conread position:594-959
               
               
               Cow position:chr11:55052727-55053066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:252
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):356, 30

               
               
               Conread position:595-795
               
               
               Cow position:chr11:14094581-14094381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):105, 27

               
               
               Conread position:595-935
               
               
               Cow position:chr11:43360946-43360610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:247
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):27, 166

               
               
               Conread position:595-941
               
               
               Cow position:chr11:48932743-48932406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:229
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):139, 29

               
               
               Conread position:595-947
               
               
               Cow position:chr11:6202288-6202647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:252
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):228, 32

               
               
               Conread position:595-948
               
               
               Cow position:chr11:66188479-66188131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 29

               
               
               Conread position:595-959
               
               
               Cow position:chr11:4663204-4662862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:241
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:596-743
               
               
               Cow position:chr11:77241214-77241357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):128, 11

               
               
               Conread position:596-887
               
               
               Cow position:chr11:83687588-83687304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):23, 52

               
               
               Conread position:596-918
               
               
               Cow position:chr11:39499201-39499515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:227
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):120, 27

               
               
               Conread position:596-937
               
               
               Cow position:chr11:51729131-51729453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 27

               
               
               Conread position:596-937
               
               
               Cow position:chr11:55744318-55744648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 48

               
               
               Conread position:596-941
               
               
               Cow position:chr11:39115336-39115656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):110, 27

               
               
               Conread position:596-941
               
               
               Cow position:chr11:46580198-46580531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:238
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):56, 28

               
               
               Conread position:596-949
               
               
               Cow position:chr11:55494522-55494854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:243
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):127, 27

               
               
               Conread position:596-951
               
               
               Cow position:chr11:1486025-1485667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):33, 163

               
               
               Conread position:596-958
               
               
               Cow position:chr11:48383369-48383730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:256
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):30, 101

               
               
               Conread position:597-940
               
               
               Cow position:chr11:2925444-2925126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):125, 26

               
               
               Conread position:597-944
               
               
               Cow position:chr11:35347911-35347565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:232
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):41, 118

               
               
               Conread position:597-951
               
               
               Cow position:chr11:2874232-2874595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):23, 102

               
               
               Conread position:597-958
               
               
               Cow position:chr11:32126454-32126816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:245
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):133, 66

               
               
               Conread position:598-929
               
               
               Cow position:chr11:31337225-31337550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):28, 90

               
               
               Conread position:598-941
               
               
               Cow position:chr11:41549491-41549155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):71, 27

               
               
               Conread position:598-950
               
               
               Cow position:chr11:5201805-5201454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):53, 25

               
               
               Conread position:598-952
               
               
               Cow position:chr11:35213316-35212977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:242
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):126, 24

               
               
               Conread position:598-959
               
               
               Cow position:chr11:63435362-63435722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 26

               
               
               Conread position:599-859
               
               
               Cow position:chr11:80761535-80761275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):17, 124

               
               
               Conread position:599-867
               
               
               Cow position:chr11:70278263-70278002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:601-875
               
               
               Cow position:chr11:69075756-69076025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):122, 22

               
               
               Conread position:601-950
               
               
               Cow position:chr11:18851766-18852090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:601-959
               
               
               Cow position:chr11:32254371-32254013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 50

               
               
               Conread position:602-843
               
               
               Cow position:chr11:52983525-52983762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):24, 44

               
               
               Conread position:602-889
               
               
               Cow position:chr11:6835380-6835666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):24, 43

               
               
               Conread position:602-929
               
               
               Cow position:chr11:69015823-69016148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):24, 46

               
               
               Conread position:602-941
               
               
               Cow position:chr11:40467272-40466940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:227
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):24, 95

               
               
               Conread position:602-945
               
               
               Cow position:chr11:84228865-84228536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:227
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):27, 59

               
               
               Conread position:602-949
               
               
               Cow position:chr11:3920457-3920110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):20, 97

               
               
               Conread position:602-949
               
               
               Cow position:chr11:81143702-81143353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):102, 146

               
               
               Conread position:603-959
               
               
               Cow position:chr11:62742785-62742446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):12, 44

               
               
               Conread position:604-767
               
               
               Cow position:chr11:65435704-65435865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:604-848
               
               
               Cow position:chr11:86720561-86720326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):187, 20

               
               
               Conread position:604-929
               
               
               Cow position:chr11:53462793-53463113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):219, 118

               
               
               Conread position:604-935
               
               
               Cow position:chr11:56675765-56676102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):16, 95

               
               
               Conread position:604-946
               
               
               Cow position:chr11:5485860-5486204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:244
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):154, 104

               
               
               Conread position:604-948
               
               
               Cow position:chr11:40794503-40794157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):22, 113

               
               
               Conread position:604-952
               
               
               Cow position:chr11:32055334-32054991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):22, 120

               
               
               Conread position:604-959
               
               
               Cow position:chr11:64104208-64103850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:241
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):70, 46

               
               
               Conread position:605-935
               
               
               Cow position:chr11:32198788-32199122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:229
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):24, 64

               
               
               Conread position:605-959
               
               
               Cow position:chr11:64009570-64009928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):125, 100

               
               
               Conread position:605-960
               
               
               Cow position:chr11:23407313-23407663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:234
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):118, 18

               
               
               Conread position:606-955
               
               
               Cow position:chr11:49057255-49057579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:246
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):116, 17

               
               
               Conread position:607-848
               
               
               Cow position:chr11:67246646-67246877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:607-894
               
               
               Cow position:chr11:61560772-61560489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):19, 41

               
               
               Conread position:607-927
               
               
               Cow position:chr11:85703559-85703858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):45, 36

               
               
               Conread position:607-937
               
               
               Cow position:chr11:68112409-68112080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):110, 24

               
               
               Conread position:607-941
               
               
               Cow position:chr11:70978874-70978552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):288, 63

               
               
               Conread position:607-945
               
               
               Cow position:chr11:28367558-28367898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):14, 97

               
               
               Conread position:608-951
               
               
               Cow position:chr11:7460763-7460430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:249
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):18, 91

               
               
               Conread position:609-941
               
               
               Cow position:chr11:70756333-70756657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):10, 79

               
               
               Conread position:609-944
               
               
               Cow position:chr11:5433121-5433452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):11, 28

               
               
               Conread position:611-842
               
               
               Cow position:chr11:65767055-65767285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):41, 12

               
               
               Conread position:611-896
               
               
               Cow position:chr11:81281805-81282091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):90, 16

               
               
               Conread position:612-929
               
               
               Cow position:chr11:5015556-5015251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):10, 61

               
               
               Conread position:612-937
               
               
               Cow position:chr11:21422077-21421759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):110, 83

               
               
               Conread position:613-752
               
               
               Cow position:chr11:10837669-10837530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):109, 11

               
               
               Conread position:613-941
               
               
               Cow position:chr11:63999230-63998907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:227
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):110, 11

               
               
               Conread position:613-945
               
               
               Cow position:chr11:32777550-32777860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:614-954
               
               
               Cow position:chr11:67615382-67615056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:614-958
               
               
               Cow position:chr11:40395298-40395635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:236
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):124, 56

               
               
               Conread position:615-937
               
               
               Cow position:chr11:70206184-70206494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:615-941
               
               
               Cow position:chr11:52690661-52690342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 95

               
               
               Conread position:616-941
               
               
               Cow position:chr11:29308442-29308765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):9, 38

               
               
               Conread position:618-823
               
               
               Cow position:chr11:80537350-80537554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):104, 30

               
               
               Conread position:618-920
               
               
               Cow position:chr11:63202383-63202085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):112, 32

               
               
               Conread position:618-922
               
               
               Cow position:chr11:35791948-35791656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):235, 78

               
               
               Conread position:618-941
               
               
               Cow position:chr11:39462493-39462802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:229
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):114, 28

               
               
               Conread position:618-941
               
               
               Cow position:chr11:48672578-48672897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:226
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):99, 20

               
               
               Conread position:618-944
               
               
               Cow position:chr11:23251728-23251413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):104, 90

               
               
               Conread position:618-946
               
               
               Cow position:chr11:27907657-27907958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:618-949
               
               
               Cow position:chr11:6642675-6643005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):32, 19

               
               
               Conread position:618-949
               
               
               Cow position:chr11:59024490-59024162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:234
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):255, 76

               
               
               Conread position:618-956
               
               
               Cow position:chr11:76652886-76653222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:233
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):94, 25

               
               
               Conread position:618-959
               
               
               Cow position:chr11:13864234-13863898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):210, 40

               
               
               Conread position:618-959
               
               
               Cow position:chr11:38334390-38334721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:619-949
               
               
               Cow position:chr11:63035315-63034981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:216
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):11, 33

               
               
               Conread position:619-950
               
               
               Cow position:chr11:62788993-62789321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:228
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):323, 236

               
               
               Conread position:619-951
               
               
               Cow position:chr11:48659796-48660123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):107, 239

               
               
               Conread position:620-880
               
               
               Cow position:chr11:39118618-39118875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):102, 231

               
               
               Conread position:620-948
               
               
               Cow position:chr11:69977843-69978155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:620-949
               
               
               Cow position:chr11:18425372-18425048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:213
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:620-951
               
               
               Cow position:chr11:75285902-75285563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):110, 94

               
               
               Conread position:621-868
               
               
               Cow position:chr11:71807704-71807455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):101, 83

               
               
               Conread position:621-946
               
               
               Cow position:chr11:81168164-81167843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:230
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):83, 7

               
               
               Conread position:621-951
               
               
               Cow position:chr11:50472182-50472511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:229
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):33, 94

               
               
               Conread position:621-957
               
               
               Cow position:chr11:61525935-61526277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):219, 101

               
               
               Conread position:622-928
               
               
               Cow position:chr11:47772524-47772212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):89, 28

               
               
               Conread position:623-812
               
               
               Cow position:chr11:21497390-21497578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):47, 74

               
               
               Conread position:624-798
               
               
               Cow position:chr11:485761-485587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):106, 63

               
               
               Conread position:624-951
               
               
               Cow position:chr11:67615059-67614732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 231

               
               
               Conread position:624-959
               
               
               Cow position:chr11:85191750-85191417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):45, 102

               
               
               Conread position:625-941
               
               
               Cow position:chr11:49873017-49872704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:225
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):27, 90

               
               
               Conread position:625-959
               
               
               Cow position:chr11:32354115-32353783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):133, 72

               
               
               Conread position:627-935
               
               
               Cow position:chr11:8461888-8462183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):304, 75

               
               
               Conread position:627-939
               
               
               Cow position:chr11:40608724-40608412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:222
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):78, 88

               
               
               Conread position:627-951
               
               
               Cow position:chr11:261390-261065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):222, 70

               
               
               Conread position:627-951
               
               
               Cow position:chr11:47837186-47837512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):16, 45

               
               
               Conread position:628-880
               
               
               Cow position:chr11:33345317-33345567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):94, 81

               
               
               Conread position:629-950
               
               
               Cow position:chr11:41293944-41293612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):29, 78

               
               
               Conread position:629-959
               
               
               Cow position:chr11:13940066-13940389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):30, 69

               
               
               Conread position:630-941
               
               
               Cow position:chr11:35693569-35693881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:200
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):200, 29

               
               
               Conread position:631-950
               
               
               Cow position:chr11:7385306-7385626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:221
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):42, 88

               
               
               Conread position:632-872
               
               
               Cow position:chr11:14466610-14466372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):89, 6

               
               
               Conread position:632-941
               
               
               Cow position:chr11:42066738-42067047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:219
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):95, 38

               
               
               Conread position:632-945
               
               
               Cow position:chr11:3739831-3740151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):100, 22

               
               
               Conread position:633-944
               
               
               Cow position:chr11:5217587-5217274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):122, 18

               
               
               Conread position:633-944
               
               
               Cow position:chr11:47311106-47310798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):97, 85

               
               
               Conread position:635-941
               
               
               Cow position:chr11:375335-375642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):53, 82

               
               
               Conread position:640-950
               
               
               Cow position:chr11:6423517-6423207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:213
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):90, 43

               
               
               Conread position:642-937
               
               
               Cow position:chr11:46998872-46999165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):217, 66

               
               
               Conread position:642-941
               
               
               Cow position:chr11:37919157-37918865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):9, 30

               
               
               Conread position:644-924
               
               
               Cow position:chr11:8684182-8683912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:644-930
               
               
               Cow position:chr11:82373759-82374042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:184
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):107, 53

               
               
               Conread position:647-941
               
               
               Cow position:chr11:48085808-48086101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):76, 223

               
               
               Conread position:647-941
               
               
               Cow position:chr11:83032574-83032860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):76, 59

               
               
               Conread position:650-840
               
               
               Cow position:chr11:26845699-26845509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):64, 45

               
               
               Conread position:650-935
               
               
               Cow position:chr11:17036634-17036355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):60, 47

               
               
               Conread position:650-937
               
               
               Cow position:chr11:30808706-30808418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):46, 114

               
               
               Conread position:650-941
               
               
               Cow position:chr11:29659458-29659742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):80, 46

               
               
               Conread position:650-945
               
               
               Cow position:chr11:31874988-31875281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):72, 22

               
               
               Conread position:651-941
               
               
               Cow position:chr11:32881047-32881328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:651-949
               
               
               Cow position:chr11:16314769-16315065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 45

               
               
               Conread position:652-862
               
               
               Cow position:chr11:83033339-83033134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):70, 58

               
               
               Conread position:652-937
               
               
               Cow position:chr11:80413114-80412830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):122, 33

               
               
               Conread position:652-949
               
               
               Cow position:chr11:31024910-31024610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):208, 56

               
               
               Conread position:653-959
               
               
               Cow position:chr11:39060702-39060399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):21, 45

               
               
               Conread position:654-954
               
               
               Cow position:chr11:53510604-53510299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):29, 57

               
               
               Conread position:655-945
               
               
               Cow position:chr11:53816759-53817042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):75, 32

               
               
               Conread position:655-948
               
               
               Cow position:chr11:58594487-58594196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):51, 42

               
               
               Conread position:656-935
               
               
               Cow position:chr11:81159781-81160059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):70, 41

               
               
               Conread position:656-937
               
               
               Cow position:chr11:42160159-42159883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):41, 118

               
               
               Conread position:657-947
               
               
               Cow position:chr11:30370010-30370293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):65, 57

               
               
               Conread position:658-927
               
               
               Cow position:chr11:35927005-35926740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:199
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):20, 53

               
               
               Conread position:658-941
               
               
               Cow position:chr11:17676467-17676192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:658-945
               
               
               Cow position:chr11:56288451-56288732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):75, 38

               
               
               Conread position:659-941
               
               
               Cow position:chr11:62813045-62812769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):46, 11

               
               
               Conread position:659-949
               
               
               Cow position:chr11:8669912-8670208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):40, 57

               
               
               Conread position:660-936
               
               
               Cow position:chr11:80564198-80564475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:201
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):63, 42

               
               
               Conread position:660-941
               
               
               Cow position:chr11:3908706-3908431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:660-959
               
               
               Cow position:chr11:63396722-63397021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):50, 35

               
               
               Conread position:661-937
               
               
               Cow position:chr11:4199179-4199453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):63, 46

               
               
               Conread position:663-945
               
               
               Cow position:chr11:2327596-2327876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):60, 40

               
               
               Conread position:663-949
               
               
               Cow position:chr11:36977714-36977998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):67, 46

               
               
               Conread position:664-939
               
               
               Cow position:chr11:21507913-21508192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):66, 32

               
               
               Conread position:664-945
               
               
               Cow position:chr11:22676025-22676299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):6, 16

               
               
               Conread position:665-948
               
               
               Cow position:chr11:69168493-69168778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):35, 46

               
               
               Conread position:665-949
               
               
               Cow position:chr11:36914657-36914374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):65, 45

               
               
               Conread position:665-951
               
               
               Cow position:chr11:1067532-1067246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:193
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):48, 32

               
               
               Conread position:673-935
               
               
               Cow position:chr11:18910960-18910706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):50, 42

               
               
               Conread position:673-937
               
               
               Cow position:chr11:32398555-32398820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):31, 50

               
               
               Conread position:673-941
               
               
               Cow position:chr11:64104915-64105176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):50, 66

               
               
               Conread position:673-945
               
               
               Cow position:chr11:33409342-33409079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):50, 29

               
               
               Conread position:673-948
               
               
               Cow position:chr11:72870819-72871087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):68, 31

               
               
               Conread position:673-958
               
               
               Cow position:chr11:3715154-3715439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):51, 43

               
               
               Conread position:673-959
               
               
               Cow position:chr11:8437771-8437486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):186, 41

               
               
               Conread position:676-910
               
               
               Cow position:chr11:31410962-31410728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):27, 185

               
               
               Conread position:676-937
               
               
               Cow position:chr11:17721883-17721622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):30, 39

               
               
               Conread position:676-959
               
               
               Cow position:chr11:62578723-62579003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):40, 26

               
               
               Conread position:677-941
               
               
               Cow position:chr11:5416806-5417069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):53, 20

               
               
               Conread position:678-935
               
               
               Cow position:chr11:4637250-4636998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):52, 19

               
               
               Conread position:678-957
               
               
               Cow position:chr11:30867104-30867374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):52, 184

               
               
               Conread position:680-935
               
               
               Cow position:chr11:6297155-6296899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):50, 22

               
               
               Conread position:680-950
               
               
               Cow position:chr11:57503407-57503672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):44, 17

               
               
               Conread position:681-941
               
               
               Cow position:chr11:953282-953542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):49, 29

               
               
               Conread position:682-941
               
               
               Cow position:chr11:7559925-7560184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):99, 86

               
               
               Conread position:682-941
               
               
               Cow position:chr11:20194502-20194241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:682-941
               
               
               Cow position:chr11:61675396-61675647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):48, 12

               
               
               Conread position:684-959
               
               
               Cow position:chr11:55636301-55636024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):17, 131

               
               
               Conread position:689-933
               
               
               Cow position:chr11:39855081-39854847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:692-944
               
               
               Cow position:chr11:1932556-1932302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):31, 22

               
               
               Conread position:693-949
               
               
               Cow position:chr11:80893718-80893973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):37, 64

               
               
               Conread position:695-940
               
               
               Cow position:chr11:25119994-25119754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):12, 57

               
               
               Conread position:696-941
               
               
               Cow position:chr11:68555154-68554909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):34, 13

               
               
               Conread position:697-951
               
               
               Cow position:chr11:46922946-46922694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):27, 162

               
               
               Conread position:698-922
               
               
               Cow position:chr11:75090276-75090055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):44, 12

               
               
               Conread position:699-942
               
               
               Cow position:chr11:18447548-18447317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:699-951
               
               
               Cow position:chr11:62230124-62230381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):31, 9

               
               
               Conread position:701-948
               
               
               Cow position:chr11:34644602-34644847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):54, 9

               
               
               Conread position:701-951
               
               
               Cow position:chr11:80639606-80639359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):22, 156

               
               
               Conread position:703-951
               
               
               Cow position:chr11:5219213-5218969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):225, 70

               
               
               Conread position:703-959
               
               
               Cow position:chr11:15369331-15369591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:704-960
               
               
               Cow position:chr11:29677148-29677409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):10, 156

               
               
               Conread position:705-949
               
               
               Cow position:chr11:66326163-66325916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:706-941
               
               
               Cow position:chr11:15382553-15382312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):24, 8

               
               
               Conread position:706-941
               
               
               Cow position:chr11:41438238-41438002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:706-959
               
               
               Cow position:chr11:68883665-68883921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:708-929
               
               
               Cow position:chr11:37436036-37435819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):8, 31

               
               
               Conread position:708-941
               
               
               Cow position:chr11:18924696-18924930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:708-949
               
               
               Cow position:chr11:30172260-30172490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):16, 49

               
               
               Conread position:708-959
               
               
               Cow position:chr11:85571855-85571605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):10, 32

               
               
               Conread position:709-943
               
               
               Cow position:chr11:71854327-71854096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):21, 105

               
               
               Conread position:710-929
               
               
               Cow position:chr11:35109585-35109369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):20, 66

               
               
               Conread position:710-941
               
               
               Cow position:chr11:19119029-19118799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):20, 5

               
               
               Conread position:710-941
               
               
               Cow position:chr11:20205897-20205675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:710-941
               
               
               Cow position:chr11:35669998-35669783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):14, 5

               
               
               Conread position:710-949
               
               
               Cow position:chr11:3597069-3597310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:710-951
               
               
               Cow position:chr11:56311643-56311404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):20, 112

               
               
               Conread position:710-955
               
               
               Cow position:chr11:2639702-2639447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):135, 6

               
               
               Conread position:711-939
               
               
               Cow position:chr11:29786544-29786312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:711-950
               
               
               Cow position:chr11:3714779-3715013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):19, 44

               
               
               Conread position:714-944
               
               
               Cow position:chr11:62889937-62889705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:714-949
               
               
               Cow position:chr11:27343227-27343463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):17, 108

               
               
               Conread position:714-949
               
               
               Cow position:chr11:30964303-30964537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:714-950
               
               
               Cow position:chr11:43914250-43914484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:714-952
               
               
               Cow position:chr11:897630-897858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):9, 141

               
               
               Conread position:714-955
               
               
               Cow position:chr11:62811254-62811492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):12, 63

               
               
               Conread position:714-959
               
               
               Cow position:chr11:63866702-63866458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):8, 37

               
               
               Conread position:715-953
               
               
               Cow position:chr11:41213000-41213248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:716-944
               
               
               Cow position:chr11:10956914-10956688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):8, 151

               
               
               Conread position:716-949
               
               
               Cow position:chr11:21885793-21886020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:716-950
               
               
               Cow position:chr11:7500701-7500944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):8, 144

               
               
               Conread position:720-941
               
               
               Cow position:chr11:28675040-28675260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:724-941
               
               
               Cow position:chr11:3896731-3896515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):137, 32

               
               
               Conread position:724-941
               
               
               Cow position:chr11:35352071-35351850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):132, 43

               
               
               Conread position:724-941
               
               
               Cow position:chr11:35562687-35562903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):208, 0

               
               
               Conread position:724-955
               
               
               Cow position:chr11:66939625-66939392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):221, 0

               
               
               Conread position:724-959
               
               
               Cow position:chr11:30895036-30894800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):219, 138

               
               
               Conread position:725-936
               
               
               Cow position:chr11:78544252-78544463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:725-939
               
               
               Cow position:chr11:63975098-63975312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:725-949
               
               
               Cow position:chr11:34968645-34968422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:725-949
               
               
               Cow position:chr11:35923823-35924047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:726-941
               
               
               Cow position:chr11:69417373-69417586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:726-950
               
               
               Cow position:chr11:6395725-6395945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):131, 37

               
               
               Conread position:726-958
               
               
               Cow position:chr11:36520844-36521080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):73, 133

               
               
               Conread position:726-959
               
               
               Cow position:chr11:32710484-32710716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):206, 0

               
               
               Conread position:728-948
               
               
               Cow position:chr11:45350540-45350320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:729-885
               
               
               Cow position:chr11:76835652-76835496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:729-941
               
               
               Cow position:chr11:2900748-2900530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:730-925
               
               
               Cow position:chr11:60486446-60486249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):14, 179

               
               
               Conread position:731-950
               
               
               Cow position:chr11:25603924-25604147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):146, 15

               
               
               Conread position:732-940
               
               
               Cow position:chr11:64408952-64409149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):198, 40

               
               
               Conread position:734-955
               
               
               Cow position:chr11:25783690-25783912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):166, 0

               
               
               Conread position:735-938
               
               
               Cow position:chr11:9836477-9836275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):33, 8

               
               
               Conread position:736-949
               
               
               Cow position:chr11:6094423-6094213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:737-949
               
               
               Cow position:chr11:25968870-25968662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:738-930
               
               
               Cow position:chr11:46884355-46884547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:740-941
               
               
               Cow position:chr11:48315413-48315216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:740-959
               
               
               Cow position:chr11:87172093-87171873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):209, 138

               
               
               Conread position:741-937
               
               
               Cow position:chr11:68326879-68326683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:741-949
               
               
               Cow position:chr11:41123616-41123406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:742-946
               
               
               Cow position:chr11:86895362-86895560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:743-949
               
               
               Cow position:chr11:64781073-64781279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:745-959
               
               
               Cow position:chr11:49396537-49396326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:747-951
               
               
               Cow position:chr11:12079827-12080036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:747-959
               
               
               Cow position:chr11:21830219-21830010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:748-929
               
               
               Cow position:chr11:35149390-35149573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):108, 75

               
               
               Conread position:750-944
               
               
               Cow position:chr11:36136104-36136294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):90, 7

               
               
               Conread position:750-959
               
               
               Cow position:chr11:19579022-19578821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:757-941
               
               
               Cow position:chr11:36092916-36092736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):32, 91

               
               
               Conread position:757-945
               
               
               Cow position:chr11:76248050-76248233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:757-955
               
               
               Cow position:chr11:36917776-36917568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):99, 64

               
               
               Conread position:757-955
               
               
               Cow position:chr11:80008067-80007863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):98, 65

               
               
               Conread position:758-937
               
               
               Cow position:chr11:2484793-2484617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):85, 25

               
               
               Conread position:760-941
               
               
               Cow position:chr11:34778440-34778260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):172, 0

               
               
               Conread position:761-958
               
               
               Cow position:chr11:17553077-17552879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:772-941
               
               
               Cow position:chr11:32108673-32108505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:772-951
               
               
               Cow position:chr11:41278201-41278380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:773-928
               
               
               Cow position:chr11:55117461-55117613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:773-930
               
               
               Cow position:chr11:21173421-21173265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:773-930
               
               
               Cow position:chr11:26343118-26343274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:773-947
               
               
               Cow position:chr11:12555289-12555115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:773-949
               
               
               Cow position:chr11:32800642-32800818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:773-955
               
               
               Cow position:chr11:32782867-32782680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):100, 170

               
               
               Conread position:773-959
               
               
               Cow position:chr11:36847184-36847369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):170, 0

               
               
               Conread position:773-960
               
               
               Cow position:chr11:35733067-35732882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:774-911
               
               
               Cow position:chr11:34136258-34136394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:103
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:774-930
               
               
               Cow position:chr11:60720438-60720282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:774-937
               
               
               Cow position:chr11:63484955-63485111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:774-938
               
               
               Cow position:chr11:33369168-33369332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:774-940
               
               
               Cow position:chr11:63475655-63475489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):72, 79

               
               
               Conread position:774-941
               
               
               Cow position:chr11:42206439-42206599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:774-941
               
               
               Cow position:chr11:54872742-54872577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):44, 27

               
               
               Conread position:774-941
               
               
               Cow position:chr11:60296748-60296921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):103, 8

               
               
               Conread position:774-941
               
               
               Cow position:chr11:80296835-80296676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):60, 77

               
               
               Conread position:774-945
               
               
               Cow position:chr11:15526127-15526294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):53, 27

               
               
               Conread position:774-945
               
               
               Cow position:chr11:63407713-63407880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:774-948
               
               
               Cow position:chr11:26057633-26057457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:774-948
               
               
               Cow position:chr11:80370132-80370303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:774-949
               
               
               Cow position:chr11:17517416-17517590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):74, 132

               
               
               Conread position:774-949
               
               
               Cow position:chr11:66099845-66099666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:774-950
               
               
               Cow position:chr11:37041989-37042168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:774-951
               
               
               Cow position:chr11:74839628-74839795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:774-952
               
               
               Cow position:chr11:77241722-77241896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:774-958
               
               
               Cow position:chr11:32260551-32260731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):115, 37

               
               
               Conread position:774-959
               
               
               Cow position:chr11:4621413-4621234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:775-929
               
               
               Cow position:chr11:2835877-2836031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:775-941
               
               
               Cow position:chr11:58048350-58048514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:775-941
               
               
               Cow position:chr11:63499111-63498948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:775-941
               
               
               Cow position:chr11:81175615-81175781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):26, 80

               
               
               Conread position:775-944
               
               
               Cow position:chr11:26442486-26442317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:775-945
               
               
               Cow position:chr11:30322474-30322307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:775-945
               
               
               Cow position:chr11:83028012-83028179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):73, 119

               
               
               Conread position:775-948
               
               
               Cow position:chr11:79548919-79548743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):130, 90

               
               
               Conread position:775-949
               
               
               Cow position:chr11:76896356-76896182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:775-950
               
               
               Cow position:chr11:81041951-81041769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):79, 44

               
               
               Conread position:775-951
               
               
               Cow position:chr11:1980249-1980072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:775-951
               
               
               Cow position:chr11:5264115-5264290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):165, 130

               
               
               Conread position:775-951
               
               
               Cow position:chr11:40538569-40538742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):17, 61

               
               
               Conread position:775-951
               
               
               Cow position:chr11:47411859-47412035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:775-954
               
               
               Cow position:chr11:42084657-42084476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:775-954
               
               
               Cow position:chr11:82725192-82725376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:775-955
               
               
               Cow position:chr11:6320114-6319933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):165, 0

               
               
               Conread position:775-957
               
               
               Cow position:chr11:47784793-47784978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):81, 172

               
               
               Conread position:775-958
               
               
               Cow position:chr11:21124592-21124407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):167, 0

               
               
               Conread position:775-959
               
               
               Cow position:chr11:21590404-21590591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:775-959
               
               
               Cow position:chr11:49210803-49210616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):82, 66

               
               
               Conread position:775-959
               
               
               Cow position:chr11:68570362-68570182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:775-959
               
               
               Cow position:chr11:79666243-79666060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):164, 86

               
               
               Conread position:775-960
               
               
               Cow position:chr11:5176358-5176177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):164, 75

               
               
               Conread position:776-951
               
               
               Cow position:chr11:35922178-35922006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):20, 13

               
               
               Conread position:776-960
               
               
               Cow position:chr11:50629296-50629470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:777-944
               
               
               Cow position:chr11:71303599-71303765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:777-947
               
               
               Cow position:chr11:38223767-38223604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:777-949
               
               
               Cow position:chr11:57767210-57767380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:777-954
               
               
               Cow position:chr11:67208273-67208447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):166, 118

               
               
               Conread position:780-937
               
               
               Cow position:chr11:43641410-43641567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:780-941
               
               
               Cow position:chr11:36300558-36300401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):43, 39

               
               
               Conread position:780-941
               
               
               Cow position:chr11:46314034-46314196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:780-944
               
               
               Cow position:chr11:62606440-62606604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:780-951
               
               
               Cow position:chr11:46010230-46010066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:780-960
               
               
               Cow position:chr11:44176619-44176793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:781-949
               
               
               Cow position:chr11:35924085-35924253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):24, 110

               
               
               Conread position:781-949
               
               
               Cow position:chr11:62102423-62102255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:782-941
               
               
               Cow position:chr11:37100147-37099989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:782-941
               
               
               Cow position:chr11:81066024-81065867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:782-943
               
               
               Cow position:chr11:42064199-42064039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):102, 42

               
               
               Conread position:782-945
               
               
               Cow position:chr11:5559307-5559470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):119, 128

               
               
               Conread position:782-950
               
               
               Cow position:chr11:33373991-33374159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):102, 96

               
               
               Conread position:782-951
               
               
               Cow position:chr11:25614788-25614610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:782-959
               
               
               Cow position:chr11:36361617-36361440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-941
               
               
               Cow position:chr11:63695819-63695655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:783-955
               
               
               Cow position:chr11:30857064-30857232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):48, 84

               
               
               Conread position:783-959
               
               
               Cow position:chr11:23220389-23220563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):168, 67

               
               
               Conread position:784-951
               
               
               Cow position:chr11:46245837-46245664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:784-957
               
               
               Cow position:chr11:15881393-15881221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):61, 57

               
               
               Conread position:784-959
               
               
               Cow position:chr11:64607230-64607045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:786-951
               
               
               Cow position:chr11:12742461-12742300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):155, 62

               
               
               Conread position:786-958
               
               
               Cow position:chr11:65431548-65431717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:787-940
               
               
               Cow position:chr11:73637885-73638037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:111
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:787-941
               
               
               Cow position:chr11:30986669-30986819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:787-951
               
               
               Cow position:chr11:36104343-36104503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):11, 128

               
               
               Conread position:787-957
               
               
               Cow position:chr11:17369561-17369724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:787-957
               
               
               Cow position:chr11:51683246-51683415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:787-960
               
               
               Cow position:chr11:18574825-18574652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:787-960
               
               
               Cow position:chr11:33271461-33271631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:788-959
               
               
               Cow position:chr11:18119535-18119706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):154, 19

               
               
               Conread position:788-959
               
               
               Cow position:chr11:67538086-67537916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):155, 0

               
               
               Conread position:791-944
               
               
               Cow position:chr11:44016278-44016431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:791-947
               
               
               Cow position:chr11:63491052-63491208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:791-958
               
               
               Cow position:chr11:24551425-24551591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):47, 16

               
               
               Conread position:791-960
               
               
               Cow position:chr11:32817782-32817611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):148, 54

               
               
               Conread position:792-948
               
               
               Cow position:chr11:1265508-1265353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):151, 0

               
               
               Conread position:794-948
               
               
               Cow position:chr11:2830694-2830846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:795-950
               
               
               Cow position:chr11:26823148-26823304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:795-951
               
               
               Cow position:chr11:38657145-38656990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):148, 0

               
               
               Conread position:796-941
               
               
               Cow position:chr11:4389941-4390086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:796-951
               
               
               Cow position:chr11:68592057-68592212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:798-959
               
               
               Cow position:chr11:23279116-23278948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:801-935
               
               
               Cow position:chr11:899478-899613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:102
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:801-958
               
               
               Cow position:chr11:32587079-32586927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:801-960
               
               
               Cow position:chr11:6784253-6784410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):143, 27

               
               
               Conread position:804-959
               
               
               Cow position:chr11:65939815-65939661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:111
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:812-939
               
               
               Cow position:chr11:43594373-43594247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:98
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:815-951
               
               
               Cow position:chr11:43737049-43736911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):57, 15

               
               
               Conread position:515-928
               
               
               Cow position:chr12:42954154-42953749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:270
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):40, 33

               
               
               Conread position:545-791
               
               
               Cow position:chr12:22124816-22125062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):16, 57

               
               
               Conread position:551-948
               
               
               Cow position:chr12:20849771-20850162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:252
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):42, 6

               
               
               Conread position:552-878
               
               
               Cow position:chr12:37733003-37732677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):172, 10

               
               
               Conread position:554-950
               
               
               Cow position:chr12:4371010-4371417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:258
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):165, 31

               
               
               Conread position:555-950
               
               
               Cow position:chr12:15050832-15050455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 29

               
               
               Conread position:561-937
               
               
               Cow position:chr12:42162823-42163199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:243
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):26, 214

               
               
               Conread position:566-719
               
               
               Cow position:chr12:29162022-29161872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:566-842
               
               
               Cow position:chr12:22539990-22540272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):29, 100

               
               
               Conread position:566-844
               
               
               Cow position:chr12:12579236-12578965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):28, 133

               
               
               Conread position:566-878
               
               
               Cow position:chr12:28257265-28256954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):27, 136

               
               
               Conread position:566-918
               
               
               Cow position:chr12:28748723-28749082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:247
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):27, 148

               
               
               Conread position:566-919
               
               
               Cow position:chr12:5632085-5631745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:243
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):27, 60

               
               
               Conread position:566-929
               
               
               Cow position:chr12:31532615-31532260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:257
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):26, 46

               
               
               Conread position:566-937
               
               
               Cow position:chr12:5635659-5635295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 61

               
               
               Conread position:566-941
               
               
               Cow position:chr12:5714417-5714779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:257
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):28, 61

               
               
               Conread position:566-949
               
               
               Cow position:chr12:37770664-37771029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:266
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):27, 61

               
               
               Conread position:569-865
               
               
               Cow position:chr12:47929007-47929288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):36, 105

               
               
               Conread position:571-951
               
               
               Cow position:chr12:46714165-46714548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:263
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):17, 42

               
               
               Conread position:574-876
               
               
               Cow position:chr12:11109562-11109853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):27, 61

               
               
               Conread position:574-941
               
               
               Cow position:chr12:30919220-30919595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:249
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):109, 48

               
               
               Conread position:574-949
               
               
               Cow position:chr12:31947916-31948281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 52

               
               
               Conread position:575-686
               
               
               Cow position:chr12:7919850-7919959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:90
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:576-749
               
               
               Cow position:chr12:2670064-2670238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):16, 120

               
               
               Conread position:576-761
               
               
               Cow position:chr12:30476282-30476466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):16, 131

               
               
               Conread position:576-824
               
               
               Cow position:chr12:17001067-17001305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:576-845
               
               
               Cow position:chr12:30438046-30438305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):16, 53

               
               
               Conread position:576-847
               
               
               Cow position:chr12:31429765-31429501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):139, 13

               
               
               Conread position:576-935
               
               
               Cow position:chr12:37993917-37993566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:256
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):286, 11

               
               
               Conread position:576-937
               
               
               Cow position:chr12:33851164-33851513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 13

               
               
               Conread position:576-941
               
               
               Cow position:chr12:11836036-11836389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:245
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):146, 9

               
               
               Conread position:576-951
               
               
               Cow position:chr12:13643041-13643405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):51, 11

               
               
               Conread position:577-687
               
               
               Cow position:chr12:32334206-32334095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:89
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:577-733
               
               
               Cow position:chr12:29694245-29694089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):15, 25

               
               
               Conread position:577-753
               
               
               Cow position:chr12:38512040-38511860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):15, 143

               
               
               Conread position:577-846
               
               
               Cow position:chr12:29484087-29483817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):143, 47

               
               
               Conread position:577-848
               
               
               Cow position:chr12:47803957-47804227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):15, 50

               
               
               Conread position:577-860
               
               
               Cow position:chr12:29780100-29779831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):15, 75

               
               
               Conread position:577-872
               
               
               Cow position:chr12:25320725-25321009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:577-919
               
               
               Cow position:chr12:4866616-4866953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):15, 119

               
               
               Conread position:578-926
               
               
               Cow position:chr12:19866041-19866390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:242
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):41, 34

               
               
               Conread position:578-941
               
               
               Cow position:chr12:6410929-6410575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:252
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):9, 46

               
               
               Conread position:578-949
               
               
               Cow position:chr12:30804171-30803809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:239
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):48, 7

               
               
               Conread position:579-937
               
               
               Cow position:chr12:41083873-41084202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:240
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):14, 45

               
               
               Conread position:579-941
               
               
               Cow position:chr12:4162563-4162212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:244
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):13, 71

               
               
               Conread position:579-955
               
               
               Cow position:chr12:40910482-40910109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 9

               
               
               Conread position:579-959
               
               
               Cow position:chr12:31530088-31530476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:251
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):21, 190

               
               
               Conread position:580-866
               
               
               Cow position:chr12:17774604-17774883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):110, 90

               
               
               Conread position:580-960
               
               
               Cow position:chr12:34466207-34465839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:260
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):48, 77

               
               
               Conread position:581-846
               
               
               Cow position:chr12:23797914-23798168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):11, 42

               
               
               Conread position:581-881
               
               
               Cow position:chr12:41473897-41474192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):11, 44

               
               
               Conread position:581-916
               
               
               Cow position:chr12:24211226-24211549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):11, 45

               
               
               Conread position:581-941
               
               
               Cow position:chr12:17080066-17080427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):6, 44

               
               
               Conread position:581-945
               
               
               Cow position:chr12:18577651-18577992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:256
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):20, 44

               
               
               Conread position:581-948
               
               
               Cow position:chr12:25280687-25280334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 44

               
               
               Conread position:581-949
               
               
               Cow position:chr12:27563577-27563210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 26

               
               
               Conread position:581-951
               
               
               Cow position:chr12:39465388-39465736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:252
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:582-903
               
               
               Cow position:chr12:43942285-43942595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):124, 41

               
               
               Conread position:584-848
               
               
               Cow position:chr12:19691424-19691163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):133, 39

               
               
               Conread position:585-813
               
               
               Cow position:chr12:28471449-28471683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):174, 34

               
               
               Conread position:585-853
               
               
               Cow position:chr12:45680082-45680353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):49, 129

               
               
               Conread position:585-867
               
               
               Cow position:chr12:3950536-3950256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):42, 86

               
               
               Conread position:585-890
               
               
               Cow position:chr12:33457956-33458259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):117, 39

               
               
               Conread position:585-937
               
               
               Cow position:chr12:27563023-27562682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):41, 125

               
               
               Conread position:585-940
               
               
               Cow position:chr12:19502605-19502254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:246
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):270, 38

               
               
               Conread position:585-941
               
               
               Cow position:chr12:4768737-4769080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):137, 88

               
               
               Conread position:585-949
               
               
               Cow position:chr12:19508757-19508395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:253
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):37, 246

               
               
               Conread position:585-949
               
               
               Cow position:chr12:35310862-35310513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:251
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):269, 28

               
               
               Conread position:585-955
               
               
               Cow position:chr12:31228385-31228757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):141, 39

               
               
               Conread position:586-945
               
               
               Cow position:chr12:17879490-17879140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:245
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):84, 16

               
               
               Conread position:589-939
               
               
               Cow position:chr12:21393518-21393869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:238
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):10, 37

               
               
               Conread position:590-848
               
               
               Cow position:chr12:23855651-23855903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):36, 119

               
               
               Conread position:590-929
               
               
               Cow position:chr12:19400988-19400667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:590-949
               
               
               Cow position:chr12:12165474-12165823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:238
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):16, 103

               
               
               Conread position:591-710
               
               
               Cow position:chr12:12017695-12017813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:98
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):35, 80

               
               
               Conread position:591-713
               
               
               Cow position:chr12:3510384-3510501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-713
               
               
               Cow position:chr12:18021411-18021533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:100
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):103, 116

               
               
               Conread position:591-715
               
               
               Cow position:chr12:22261007-22260883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):97, 33

               
               
               Conread position:591-722
               
               
               Cow position:chr12:3039317-3039455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:591-734
               
               
               Cow position:chr12:17702412-17702269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):52, 43

               
               
               Conread position:591-743
               
               
               Cow position:chr12:7191445-7191296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):33, 48

               
               
               Conread position:591-753
               
               
               Cow position:chr12:25455935-25456095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):131, 101

               
               
               Conread position:591-753
               
               
               Cow position:chr12:25820614-25820454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):35, 69

               
               
               Conread position:591-753
               
               
               Cow position:chr12:28650773-28650933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):133, 16

               
               
               Conread position:591-754
               
               
               Cow position:chr12:3070926-3071086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):86, 79

               
               
               Conread position:591-767
               
               
               Cow position:chr12:3579101-3579276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):79, 32

               
               
               Conread position:591-793
               
               
               Cow position:chr12:26317280-26317481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):106, 28

               
               
               Conread position:591-803
               
               
               Cow position:chr12:731120-730910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):114, 26

               
               
               Conread position:591-804
               
               
               Cow position:chr12:20326591-20326801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):134, 34

               
               
               Conread position:591-812
               
               
               Cow position:chr12:3055958-3056167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):115, 33

               
               
               Conread position:591-816
               
               
               Cow position:chr12:3906289-3906512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):131, 115

               
               
               Conread position:591-818
               
               
               Cow position:chr12:10491089-10491312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):35, 64

               
               
               Conread position:591-820
               
               
               Cow position:chr12:5658255-5658034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):30, 113

               
               
               Conread position:591-830
               
               
               Cow position:chr12:25452627-25452394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:171
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):95, 24

               
               
               Conread position:591-841
               
               
               Cow position:chr12:8869060-8868818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):142, 33

               
               
               Conread position:591-841
               
               
               Cow position:chr12:18964110-18963864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-841
               
               
               Cow position:chr12:29995643-29995400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:591-846
               
               
               Cow position:chr12:5800851-5801112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):111, 79

               
               
               Conread position:591-848
               
               
               Cow position:chr12:19715218-19714969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):135, 18

               
               
               Conread position:591-848
               
               
               Cow position:chr12:29969397-29969650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:591-854
               
               
               Cow position:chr12:29770756-29770502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-855
               
               
               Cow position:chr12:5940164-5940418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:591-860
               
               
               Cow position:chr12:2711309-2711582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):33, 127

               
               
               Conread position:591-860
               
               
               Cow position:chr12:44517919-44517655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):131, 51

               
               
               Conread position:591-864
               
               
               Cow position:chr12:7977859-7978124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:202
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):107, 75

               
               
               Conread position:591-873
               
               
               Cow position:chr12:6485390-6485120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):120, 32

               
               
               Conread position:591-875
               
               
               Cow position:chr12:7000788-7000507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 113

               
               
               Conread position:591-875
               
               
               Cow position:chr12:41580933-41581209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):32, 108

               
               
               Conread position:591-879
               
               
               Cow position:chr12:1773850-1773559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):33, 14

               
               
               Conread position:591-886
               
               
               Cow position:chr12:9914604-9914900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:210
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):35, 53

               
               
               Conread position:591-894
               
               
               Cow position:chr12:33323678-33323380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-903
               
               
               Cow position:chr12:30662132-30661826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 102

               
               
               Conread position:591-904
               
               
               Cow position:chr12:4008460-4008156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):241, 33

               
               
               Conread position:591-917
               
               
               Cow position:chr12:19154801-19154480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):35, 101

               
               
               Conread position:591-919
               
               
               Cow position:chr12:19869286-19869617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:233
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):227, 32

               
               
               Conread position:591-927
               
               
               Cow position:chr12:45363178-45363509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:230
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):35, 57

               
               
               Conread position:591-928
               
               
               Cow position:chr12:17270362-17270685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):133, 58

               
               
               Conread position:591-929
               
               
               Cow position:chr12:23574587-23574919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:240
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):133, 26

               
               
               Conread position:591-930
               
               
               Cow position:chr12:15162967-15163307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:254
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):183, 40

               
               
               Conread position:591-935
               
               
               Cow position:chr12:18020675-18021033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):132, 26

               
               
               Conread position:591-937
               
               
               Cow position:chr12:32169357-32169703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:244
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):123, 79

               
               
               Conread position:591-940
               
               
               Cow position:chr12:44602324-44602666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):144, 43

               
               
               Conread position:591-941
               
               
               Cow position:chr12:3076802-3076459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):35, 81

               
               
               Conread position:591-941
               
               
               Cow position:chr12:6720140-6720509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:259
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr12:17031432-17031770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:238
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr12:17881679-17882016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:248
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):56, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr12:18123503-18123827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:237
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-941
               
               
               Cow position:chr12:25561189-25561527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:244
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr12:30210299-30210631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:239
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):110, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr12:30745533-30745877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr12:36544832-36544483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:246
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):114, 32

               
               
               Conread position:591-944
               
               
               Cow position:chr12:35780106-35779756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):21, 37

               
               
               Conread position:591-948
               
               
               Cow position:chr12:22515919-22515568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:249
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):32, 22

               
               
               Conread position:591-949
               
               
               Cow position:chr12:35368458-35368813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 33

               
               
               Conread position:591-950
               
               
               Cow position:chr12:42685130-42684765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:251
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-952
               
               
               Cow position:chr12:18421106-18420747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):126, 28

               
               
               Conread position:591-952
               
               
               Cow position:chr12:36501133-36500774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:255
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):31, 83

               
               
               Conread position:591-959
               
               
               Cow position:chr12:15938457-15938091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 180

               
               
               Conread position:591-959
               
               
               Cow position:chr12:42181320-42180947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 17

               
               
               Conread position:591-960
               
               
               Cow position:chr12:26868978-26868634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:250
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):345, 55

               
               
               Conread position:591-960
               
               
               Cow position:chr12:34161233-34161584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:246
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):139, 33

               
               
               Conread position:592-700
               
               
               Cow position:chr12:40270276-40270167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:93
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:592-753
               
               
               Cow position:chr12:4182873-4182715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:592-812
               
               
               Cow position:chr12:18420288-18420504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:592-816
               
               
               Cow position:chr12:6210339-6210119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):101, 31

               
               
               Conread position:592-842
               
               
               Cow position:chr12:15530876-15531119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):130, 31

               
               
               Conread position:592-855
               
               
               Cow position:chr12:44595992-44595732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):110, 33

               
               
               Conread position:592-859
               
               
               Cow position:chr12:35378021-35378285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):133, 31

               
               
               Conread position:592-885
               
               
               Cow position:chr12:2813044-2813336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):53, 31

               
               
               Conread position:592-914
               
               
               Cow position:chr12:22287094-22287410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):151, 30

               
               
               Conread position:592-937
               
               
               Cow position:chr12:11056698-11057023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 31

               
               
               Conread position:592-938
               
               
               Cow position:chr12:12637370-12637027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 132

               
               
               Conread position:592-939
               
               
               Cow position:chr12:18388464-18388128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):171, 27

               
               
               Conread position:592-941
               
               
               Cow position:chr12:5459081-5459411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):34, 76

               
               
               Conread position:592-941
               
               
               Cow position:chr12:6241131-6241485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:245
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):106, 31

               
               
               Conread position:592-941
               
               
               Cow position:chr12:42160731-42160396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:241
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):34, 105

               
               
               Conread position:592-948
               
               
               Cow position:chr12:9710393-9710037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:240
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):34, 46

               
               
               Conread position:592-949
               
               
               Cow position:chr12:36118792-36119137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:238
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):34, 72

               
               
               Conread position:592-950
               
               
               Cow position:chr12:38774422-38774075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:592-951
               
               
               Cow position:chr12:15358150-15358514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:250
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):109, 115

               
               
               Conread position:592-951
               
               
               Cow position:chr12:42283016-42282665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:246
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):199, 104

               
               
               Conread position:592-956
               
               
               Cow position:chr12:9143215-9143562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:250
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):339, 31

               
               
               Conread position:592-958
               
               
               Cow position:chr12:24662936-24663293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:250
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):265, 18

               
               
               Conread position:592-959
               
               
               Cow position:chr12:33129086-33129435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:252
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):356, 26

               
               
               Conread position:593-807
               
               
               Cow position:chr12:941455-941670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):93, 132

               
               
               Conread position:593-809
               
               
               Cow position:chr12:28582683-28582476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):129, 14

               
               
               Conread position:593-842
               
               
               Cow position:chr12:5905876-5906121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):132, 14

               
               
               Conread position:593-865
               
               
               Cow position:chr12:45814442-45814174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):35, 109

               
               
               Conread position:593-875
               
               
               Cow position:chr12:32714863-32715142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):137, 30

               
               
               Conread position:593-876
               
               
               Cow position:chr12:30753538-30753814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):42, 112

               
               
               Conread position:593-887
               
               
               Cow position:chr12:15763091-15762804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):33, 79

               
               
               Conread position:593-894
               
               
               Cow position:chr12:42254480-42254783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:218
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):32, 116

               
               
               Conread position:593-896
               
               
               Cow position:chr12:45820540-45820247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:205
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):130, 30

               
               
               Conread position:593-903
               
               
               Cow position:chr12:41159411-41159713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:221
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):32, 59

               
               
               Conread position:593-941
               
               
               Cow position:chr12:7960758-7960426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:231
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):103, 53

               
               
               Conread position:593-941
               
               
               Cow position:chr12:18518485-18518833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 39

               
               
               Conread position:593-941
               
               
               Cow position:chr12:20071759-20071408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:236
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):34, 200

               
               
               Conread position:593-941
               
               
               Cow position:chr12:33976020-33976364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):261, 32

               
               
               Conread position:593-941
               
               
               Cow position:chr12:44622173-44622521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:245
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):104, 30

               
               
               Conread position:593-948
               
               
               Cow position:chr12:41216890-41217236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:233
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):35, 52

               
               
               Conread position:593-950
               
               
               Cow position:chr12:11587586-11587939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 125

               
               
               Conread position:593-951
               
               
               Cow position:chr12:8943400-8943046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):255, 77

               
               
               Conread position:593-951
               
               
               Cow position:chr12:42966819-42967166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 30

               
               
               Conread position:593-959
               
               
               Cow position:chr12:30805673-30806032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:252
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):175, 30

               
               
               Conread position:593-960
               
               
               Cow position:chr12:10461822-10462171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:244
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):29, 65

               
               
               Conread position:594-918
               
               
               Cow position:chr12:25917443-25917138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):167, 29

               
               
               Conread position:594-941
               
               
               Cow position:chr12:7884850-7884519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:239
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):83, 29

               
               
               Conread position:594-945
               
               
               Cow position:chr12:10895726-10895389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):130, 22

               
               
               Conread position:594-945
               
               
               Cow position:chr12:15089334-15089681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:241
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):109, 35

               
               
               Conread position:594-950
               
               
               Cow position:chr12:32051329-32051690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):7, 59

               
               
               Conread position:594-959
               
               
               Cow position:chr12:9482478-9482122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:256
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):130, 24

               
               
               Conread position:596-752
               
               
               Cow position:chr12:22047295-22047445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):23, 50

               
               
               Conread position:596-753
               
               
               Cow position:chr12:24440640-24440791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:596-842
               
               
               Cow position:chr12:30170490-30170733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:596-874
               
               
               Cow position:chr12:4820771-4821058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):33, 107

               
               
               Conread position:596-875
               
               
               Cow position:chr12:31959717-31959977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:194
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):128, 15

               
               
               Conread position:596-902
               
               
               Cow position:chr12:35123714-35124014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 56

               
               
               Conread position:596-923
               
               
               Cow position:chr12:41091355-41091678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:223
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):23, 75

               
               
               Conread position:596-935
               
               
               Cow position:chr12:15122142-15122481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 27

               
               
               Conread position:596-941
               
               
               Cow position:chr12:20777100-20776768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 21

               
               
               Conread position:596-949
               
               
               Cow position:chr12:4093921-4093600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:246
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):30, 49

               
               
               Conread position:596-957
               
               
               Cow position:chr12:22881873-22882229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):29, 19

               
               
               Conread position:596-959
               
               
               Cow position:chr12:42602415-42602058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 49

               
               
               Conread position:597-848
               
               
               Cow position:chr12:18766155-18765902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):97, 29

               
               
               Conread position:597-937
               
               
               Cow position:chr12:15415050-15414714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):113, 27

               
               
               Conread position:597-937
               
               
               Cow position:chr12:42879518-42879856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 26

               
               
               Conread position:597-941
               
               
               Cow position:chr12:30578632-30578296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):192, 98

               
               
               Conread position:597-948
               
               
               Cow position:chr12:1998977-1998629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:239
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):22, 51

               
               
               Conread position:597-949
               
               
               Cow position:chr12:4719768-4720113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 86

               
               
               Conread position:597-949
               
               
               Cow position:chr12:23916665-23917008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 174

               
               
               Conread position:597-955
               
               
               Cow position:chr12:34473801-34473433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):196, 26

               
               
               Conread position:598-935
               
               
               Cow position:chr12:15703673-15703340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):115, 25

               
               
               Conread position:599-875
               
               
               Cow position:chr12:44919859-44920126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):123, 28

               
               
               Conread position:600-911
               
               
               Cow position:chr12:20636333-20636019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):26, 126

               
               
               Conread position:600-939
               
               
               Cow position:chr12:42174240-42174590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):24, 111

               
               
               Conread position:601-753
               
               
               Cow position:chr12:20354796-20354952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):101, 85

               
               
               Conread position:602-951
               
               
               Cow position:chr12:6242348-6242003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):121, 100

               
               
               Conread position:603-952
               
               
               Cow position:chr12:37170114-37169774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:245
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):119, 20

               
               
               Conread position:604-960
               
               
               Cow position:chr12:11546860-11547219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:244
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):113, 21

               
               
               Conread position:605-935
               
               
               Cow position:chr12:48415686-48415365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):49, 18

               
               
               Conread position:606-941
               
               
               Cow position:chr12:20479493-20479183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):21, 65

               
               
               Conread position:606-949
               
               
               Cow position:chr12:40360519-40360860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):21, 39

               
               
               Conread position:607-959
               
               
               Cow position:chr12:42784140-42784487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:250
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):40, 19

               
               
               Conread position:608-831
               
               
               Cow position:chr12:9894616-9894836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):14, 93

               
               
               Conread position:608-935
               
               
               Cow position:chr12:22485647-22485968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):34, 15

               
               
               Conread position:609-941
               
               
               Cow position:chr12:15103099-15103438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:232
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):88, 101

               
               
               Conread position:611-816
               
               
               Cow position:chr12:41216047-41215846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):111, 12

               
               
               Conread position:612-855
               
               
               Cow position:chr12:25188025-25188266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):58, 31

               
               
               Conread position:612-938
               
               
               Cow position:chr12:37701359-37701689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:612-941
               
               
               Cow position:chr12:41658885-41658560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):279, 13

               
               
               Conread position:612-955
               
               
               Cow position:chr12:36790973-36790640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:239
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):77, 15

               
               
               Conread position:613-865
               
               
               Cow position:chr12:3599914-3599672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):156, 85

               
               
               Conread position:613-916
               
               
               Cow position:chr12:6102991-6102691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):13, 96

               
               
               Conread position:613-941
               
               
               Cow position:chr12:15039137-15038824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):113, 11

               
               
               Conread position:613-949
               
               
               Cow position:chr12:33298028-33298353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):68, 30

               
               
               Conread position:615-941
               
               
               Cow position:chr12:12300761-12301089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:228
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):146, 91

               
               
               Conread position:618-928
               
               
               Cow position:chr12:46120987-46120668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):104, 77

               
               
               Conread position:618-935
               
               
               Cow position:chr12:25809266-25809590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):21, 55

               
               
               Conread position:618-937
               
               
               Cow position:chr12:3623537-3623848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:218
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):112, 90

               
               
               Conread position:618-941
               
               
               Cow position:chr12:4596308-4596634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:225
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):97, 153

               
               
               Conread position:618-941
               
               
               Cow position:chr12:35771176-35770863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:224
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):104, 88

               
               
               Conread position:618-941
               
               
               Cow position:chr12:38126676-38126360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:225
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):112, 21

               
               
               Conread position:618-948
               
               
               Cow position:chr12:34332956-34333284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:222
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):273, 65

               
               
               Conread position:618-951
               
               
               Cow position:chr12:25027929-25027586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):59, 52

               
               
               Conread position:618-959
               
               
               Cow position:chr12:15783766-15784102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:619-950
               
               
               Cow position:chr12:22285275-22284952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):24, 32

               
               
               Conread position:620-949
               
               
               Cow position:chr12:13988216-13988543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:228
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):242, 76

               
               
               Conread position:621-899
               
               
               Cow position:chr12:38184443-38184718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):231, 83

               
               
               Conread position:621-955
               
               
               Cow position:chr12:7539945-7539609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):79, 7

               
               
               Conread position:622-944
               
               
               Cow position:chr12:10942133-10942458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 14

               
               
               Conread position:622-959
               
               
               Cow position:chr12:17269646-17269980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:227
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):30, 21

               
               
               Conread position:623-958
               
               
               Cow position:chr12:24032349-24032665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):140, 48

               
               
               Conread position:624-945
               
               
               Cow position:chr12:26217977-26217662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):98, 80

               
               
               Conread position:625-868
               
               
               Cow position:chr12:15173675-15173914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:626-947
               
               
               Cow position:chr12:23446573-23446883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:224
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):104, 58

               
               
               Conread position:627-957
               
               
               Cow position:chr12:19258131-19258452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 81

               
               
               Conread position:628-875
               
               
               Cow position:chr12:45090505-45090252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):68, 165

               
               
               Conread position:628-944
               
               
               Cow position:chr12:9543893-9543581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):69, 133

               
               
               Conread position:628-958
               
               
               Cow position:chr12:16670118-16670444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):94, 82

               
               
               Conread position:629-937
               
               
               Cow position:chr12:26575739-26576049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):8, 232

               
               
               Conread position:629-959
               
               
               Cow position:chr12:34165441-34165777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):138, 66

               
               
               Conread position:630-949
               
               
               Cow position:chr12:43560296-43559973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):70, 135

               
               
               Conread position:630-959
               
               
               Cow position:chr12:3372004-3371676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):66, 127

               
               
               Conread position:631-956
               
               
               Cow position:chr12:7110056-7110384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):137, 75

               
               
               Conread position:633-959
               
               
               Cow position:chr12:29675279-29674961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:225
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:638-941
               
               
               Cow position:chr12:38852167-38851862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):92, 41

               
               
               Conread position:638-959
               
               
               Cow position:chr12:38216176-38215847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):46, 68

               
               
               Conread position:639-942
               
               
               Cow position:chr12:38220119-38220401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):202, 62

               
               
               Conread position:646-959
               
               
               Cow position:chr12:24152208-24152520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):104, 59

               
               
               Conread position:647-941
               
               
               Cow position:chr12:26750088-26749789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:214
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):12, 257

               
               
               Conread position:647-958
               
               
               Cow position:chr12:9129770-9130081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):46, 23

               
               
               Conread position:647-958
               
               
               Cow position:chr12:42286881-42286561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):24, 213

               
               
               Conread position:649-959
               
               
               Cow position:chr12:37814750-37814438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):25, 48

               
               
               Conread position:650-855
               
               
               Cow position:chr12:44733217-44733014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):72, 47

               
               
               Conread position:650-941
               
               
               Cow position:chr12:30590642-30590930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):72, 56

               
               
               Conread position:650-958
               
               
               Cow position:chr12:16056985-16056677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):80, 56

               
               
               Conread position:650-960
               
               
               Cow position:chr12:33495107-33495415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):72, 54

               
               
               Conread position:651-937
               
               
               Cow position:chr12:37008828-37008553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):27, 19

               
               
               Conread position:651-941
               
               
               Cow position:chr12:14222852-14223144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 86

               
               
               Conread position:651-941
               
               
               Cow position:chr12:35652984-35652706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:209
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):51, 95

               
               
               Conread position:651-949
               
               
               Cow position:chr12:19261074-19261364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):72, 19

               
               
               Conread position:652-876
               
               
               Cow position:chr12:24222641-24222422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:654-944
               
               
               Cow position:chr12:18563028-18563326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):45, 205

               
               
               Conread position:655-941
               
               
               Cow position:chr12:4341860-4341574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):75, 49

               
               
               Conread position:655-949
               
               
               Cow position:chr12:18103731-18103448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):49, 68

               
               
               Conread position:657-933
               
               
               Cow position:chr12:21780046-21780317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:659-950
               
               
               Cow position:chr12:31269034-31269329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):48, 244

               
               
               Conread position:661-935
               
               
               Cow position:chr12:4510356-4510083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):45, 36

               
               
               Conread position:664-957
               
               
               Cow position:chr12:18583104-18582819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):279, 51

               
               
               Conread position:665-951
               
               
               Cow position:chr12:35241213-35240930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):103, 41

               
               
               Conread position:666-922
               
               
               Cow position:chr12:46122553-46122807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):178, 55

               
               
               Conread position:672-944
               
               
               Cow position:chr12:18413598-18413347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):45, 34

               
               
               Conread position:673-933
               
               
               Cow position:chr12:23939121-23939372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:673-941
               
               
               Cow position:chr12:42285866-42286125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):49, 42

               
               
               Conread position:673-944
               
               
               Cow position:chr12:16493462-16493191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):85, 43

               
               
               Conread position:673-945
               
               
               Cow position:chr12:4954728-4954986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:673-959
               
               
               Cow position:chr12:25343680-25343962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):51, 33

               
               
               Conread position:674-941
               
               
               Cow position:chr12:43974188-43974453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):18, 50

               
               
               Conread position:676-960
               
               
               Cow position:chr12:37514382-37514102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):47, 38

               
               
               Conread position:680-959
               
               
               Cow position:chr12:17479138-17478859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):37, 17

               
               
               Conread position:683-948
               
               
               Cow position:chr12:42749348-42749611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):22, 27

               
               
               Conread position:685-945
               
               
               Cow position:chr12:27176544-27176803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):39, 17

               
               
               Conread position:685-945
               
               
               Cow position:chr12:27192460-27192201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):39, 17

               
               
               Conread position:686-948
               
               
               Cow position:chr12:5554425-5554169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):34, 24

               
               
               Conread position:693-940
               
               
               Cow position:chr12:18514012-18513766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):30, 17

               
               
               Conread position:695-960
               
               
               Cow position:chr12:11659844-11660109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):21, 94

               
               
               Conread position:696-938
               
               
               Cow position:chr12:33948821-33949058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):13, 156

               
               
               Conread position:697-925
               
               
               Cow position:chr12:9514282-9514513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):194, 24

               
               
               Conread position:697-949
               
               
               Cow position:chr12:4193748-4194004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):34, 13

               
               
               Conread position:697-949
               
               
               Cow position:chr12:20404066-20404320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):35, 18

               
               
               Conread position:697-949
               
               
               Cow position:chr12:42631120-42630866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:697-955
               
               
               Cow position:chr12:5839738-5839486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):11, 163

               
               
               Conread position:702-937
               
               
               Cow position:chr12:40158098-40157871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):28, 72

               
               
               Conread position:706-921
               
               
               Cow position:chr12:18157620-18157404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):8, 120

               
               
               Conread position:707-941
               
               
               Cow position:chr12:42924185-42923950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):10, 144

               
               
               Conread position:709-945
               
               
               Cow position:chr12:29057320-29057555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):22, 140

               
               
               Conread position:709-948
               
               
               Cow position:chr12:29966038-29966273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):21, 36

               
               
               Conread position:709-949
               
               
               Cow position:chr12:12232814-12233050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):37, 61

               
               
               Conread position:709-951
               
               
               Cow position:chr12:6188183-6187938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:709-959
               
               
               Cow position:chr12:15495829-15496077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):21, 173

               
               
               Conread position:710-936
               
               
               Cow position:chr12:5135166-5135388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):14, 5

               
               
               Conread position:710-949
               
               
               Cow position:chr12:34029194-34028956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):20, 5

               
               
               Conread position:710-950
               
               
               Cow position:chr12:17252266-17252033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):13, 68

               
               
               Conread position:713-960
               
               
               Cow position:chr12:36261624-36261877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:715-933
               
               
               Cow position:chr12:15389008-15389223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):15, 134

               
               
               Conread position:716-949
               
               
               Cow position:chr12:38155133-38154899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:716-951
               
               
               Cow position:chr12:45002129-45001897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):14, 122

               
               
               Conread position:721-945
               
               
               Cow position:chr12:45039051-45039272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):37, 140

               
               
               Conread position:721-949
               
               
               Cow position:chr12:11977629-11977858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:722-959
               
               
               Cow position:chr12:27385435-27385666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:724-950
               
               
               Cow position:chr12:10827732-10827956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):145, 0

               
               
               Conread position:725-932
               
               
               Cow position:chr12:8153134-8153341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:725-948
               
               
               Cow position:chr12:33625458-33625235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:725-949
               
               
               Cow position:chr12:31925800-31926024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:726-947
               
               
               Cow position:chr12:30946692-30946913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):108, 97

               
               
               Conread position:729-925
               
               
               Cow position:chr12:12532539-12532346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:729-952
               
               
               Cow position:chr12:2734956-2734740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:730-937
               
               
               Cow position:chr12:26147217-26147011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):132, 144

               
               
               Conread position:730-939
               
               
               Cow position:chr12:43854847-43855049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:730-941
               
               
               Cow position:chr12:24437682-24437471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:731-941
               
               
               Cow position:chr12:23105891-23106100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:731-949
               
               
               Cow position:chr12:43474714-43474927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:731-959
               
               
               Cow position:chr12:23714628-23714852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):10, 142

               
               
               Conread position:732-941
               
               
               Cow position:chr12:14986704-14986908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:733-941
               
               
               Cow position:chr12:26356755-26356547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:738-941
               
               
               Cow position:chr12:25823266-25823067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:740-957
               
               
               Cow position:chr12:37480872-37480657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):203, 53

               
               
               Conread position:741-949
               
               
               Cow position:chr12:39150088-39149880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):164, 168

               
               
               Conread position:743-929
               
               
               Cow position:chr12:42944100-42944286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:745-941
               
               
               Cow position:chr12:2964018-2964207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:745-943
               
               
               Cow position:chr12:29316494-29316299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):75, 142

               
               
               Conread position:745-948
               
               
               Cow position:chr12:29731282-29731479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:747-941
               
               
               Cow position:chr12:16386487-16386293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):181, 117

               
               
               Conread position:747-950
               
               
               Cow position:chr12:25456378-25456591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:747-959
               
               
               Cow position:chr12:6206301-6206513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):84, 54

               
               
               Conread position:748-959
               
               
               Cow position:chr12:26357400-26357189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):101, 208

               
               
               Conread position:749-949
               
               
               Cow position:chr12:35136889-35137090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:757-940
               
               
               Cow position:chr12:4512470-4512291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:760-941
               
               
               Cow position:chr12:19272706-19272529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:763-959
               
               
               Cow position:chr12:38679035-38679230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):173, 93

               
               
               Conread position:772-949
               
               
               Cow position:chr12:37123645-37123821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:773-914
               
               
               Cow position:chr12:11106585-11106444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:773-927
               
               
               Cow position:chr12:43351930-43352084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:773-935
               
               
               Cow position:chr12:38552190-38552349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):158, 94

               
               
               Conread position:773-937
               
               
               Cow position:chr12:31841565-31841727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:773-941
               
               
               Cow position:chr12:24397167-24397004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:773-949
               
               
               Cow position:chr12:9866767-9866592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:773-949
               
               
               Cow position:chr12:22323278-22323098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:773-949
               
               
               Cow position:chr12:30042721-30042897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:773-958
               
               
               Cow position:chr12:12699645-12699458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):164, 0

               
               
               Conread position:773-959
               
               
               Cow position:chr12:43551226-43551037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:774-906
               
               
               Cow position:chr12:46634674-46634543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:774-938
               
               
               Cow position:chr12:22752622-22752790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:774-949
               
               
               Cow position:chr12:43427805-43427630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):56, 47

               
               
               Conread position:774-949
               
               
               Cow position:chr12:45782223-45782392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:774-951
               
               
               Cow position:chr12:17254138-17254316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):17, 78

               
               
               Conread position:774-960
               
               
               Cow position:chr12:41684504-41684684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:775-940
               
               
               Cow position:chr12:3057085-3057249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:775-941
               
               
               Cow position:chr12:43619278-43619444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):32, 25

               
               
               Conread position:775-944
               
               
               Cow position:chr12:1089395-1089226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):42, 18

               
               
               Conread position:775-944
               
               
               Cow position:chr12:22047919-22048088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:775-954
               
               
               Cow position:chr12:4014435-4014247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:775-954
               
               
               Cow position:chr12:34877828-34878012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:775-957
               
               
               Cow position:chr12:31602824-31602643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):174, 94

               
               
               Conread position:777-945
               
               
               Cow position:chr12:6426896-6427064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):120, 13

               
               
               Conread position:777-960
               
               
               Cow position:chr12:38032140-38031964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:780-937
               
               
               Cow position:chr12:25814156-25814314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):49, 37

               
               
               Conread position:780-941
               
               
               Cow position:chr12:3454697-3454858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):69, 127

               
               
               Conread position:780-959
               
               
               Cow position:chr12:20356806-20356629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):159, 125

               
               
               Conread position:781-951
               
               
               Cow position:chr12:42951684-42951520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):102, 71

               
               
               Conread position:782-939
               
               
               Cow position:chr12:6915229-6915386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):58, 66

               
               
               Conread position:782-956
               
               
               Cow position:chr12:34533068-34532896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):76, 59

               
               
               Conread position:784-954
               
               
               Cow position:chr12:2835410-2835579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):88, 61

               
               
               Conread position:787-951
               
               
               Cow position:chr12:13995788-13995623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:787-955
               
               
               Cow position:chr12:20637526-20637364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:787-959
               
               
               Cow position:chr12:4109053-4109223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):166, 0

               
               
               Conread position:787-959
               
               
               Cow position:chr12:18978697-18978864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):47, 74

               
               
               Conread position:788-941
               
               
               Cow position:chr12:44892218-44892370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:789-935
               
               
               Cow position:chr12:10834121-10833976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):142, 93

               
               
               Conread position:789-944
               
               
               Cow position:chr12:27663981-27663826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:790-949
               
               
               Cow position:chr12:37742311-37742468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):152, 0

               
               
               Conread position:790-951
               
               
               Cow position:chr12:37718758-37718598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):153, 0

               
               
               Conread position:790-958
               
               
               Cow position:chr12:583497-583326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:791-949
               
               
               Cow position:chr12:39282691-39282533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:792-950
               
               
               Cow position:chr12:40435028-40434873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:793-951
               
               
               Cow position:chr12:37420490-37420332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:795-959
               
               
               Cow position:chr12:39738281-39738118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:799-941
               
               
               Cow position:chr12:41317091-41316949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:800-941
               
               
               Cow position:chr12:39320411-39320551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:801-938
               
               
               Cow position:chr12:25299383-25299519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:801-951
               
               
               Cow position:chr12:9055395-9055245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:801-959
               
               
               Cow position:chr12:14360666-14360824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):138, 86

               
               
               Conread position:807-951
               
               
               Cow position:chr12:3579514-3579654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:811-951
               
               
               Cow position:chr12:6719421-6719561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:814-959
               
               
               Cow position:chr12:11167903-11168046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:516-949
               
               
               Cow position:chr13:49824231-49823802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:292
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 58

               
               
               Conread position:547-941
               
               
               Cow position:chr13:1170644-1170245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:247
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):58, 7

               
               
               Conread position:548-925
               
               
               Cow position:chr13:44626541-44626168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:261
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):78, 21

               
               
               Conread position:552-949
               
               
               Cow position:chr13:2823025-2822646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:262
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):337, 35

               
               
               Conread position:556-941
               
               
               Cow position:chr13:19188466-19188101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:267
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):36, 13

               
               
               Conread position:556-949
               
               
               Cow position:chr13:6931087-6930702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:267
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):37, 106

               
               
               Conread position:557-817
               
               
               Cow position:chr13:20180582-20180321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):35, 147

               
               
               Conread position:560-949
               
               
               Cow position:chr13:17977500-17977119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:261
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):19, 50

               
               
               Conread position:560-951
               
               
               Cow position:chr13:17970866-17971266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:272
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):15, 8

               
               
               Conread position:561-950
               
               
               Cow position:chr13:11202190-11201816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:251
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):66, 24

               
               
               Conread position:561-957
               
               
               Cow position:chr13:20360431-20360046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 64

               
               
               Conread position:562-949
               
               
               Cow position:chr13:19033712-19033334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:263
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):32, 7

               
               
               Conread position:562-949
               
               
               Cow position:chr13:39232673-39233048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:257
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):13, 27

               
               
               Conread position:562-958
               
               
               Cow position:chr13:52749321-52749694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 7

               
               
               Conread position:566-854
               
               
               Cow position:chr13:21176166-21176449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):26, 58

               
               
               Conread position:566-875
               
               
               Cow position:chr13:2414184-2413880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):60, 19

               
               
               Conread position:566-879
               
               
               Cow position:chr13:28689628-28689313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):38, 85

               
               
               Conread position:566-922
               
               
               Cow position:chr13:51015022-51015378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:249
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):27, 135

               
               
               Conread position:566-922
               
               
               Cow position:chr13:52227942-52228292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):27, 17

               
               
               Conread position:566-941
               
               
               Cow position:chr13:15192736-15193102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 19

               
               
               Conread position:566-941
               
               
               Cow position:chr13:17855532-17855154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:263
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):27, 64

               
               
               Conread position:566-941
               
               
               Cow position:chr13:24715400-24715036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:258
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):23, 141

               
               
               Conread position:566-941
               
               
               Cow position:chr13:37818595-37818958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:256
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):150, 19

               
               
               Conread position:566-951
               
               
               Cow position:chr13:16247813-16247421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:265
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):164, 143

               
               
               Conread position:566-951
               
               
               Cow position:chr13:60508961-60509348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 111

               
               
               Conread position:566-959
               
               
               Cow position:chr13:14063366-14063754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 58

               
               
               Conread position:568-941
               
               
               Cow position:chr13:60599781-60600149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):8, 133

               
               
               Conread position:569-941
               
               
               Cow position:chr13:51528296-51528651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:251
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):152, 20

               
               
               Conread position:569-959
               
               
               Cow position:chr13:9587436-9587812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:258
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):57, 16

               
               
               Conread position:571-837
               
               
               Cow position:chr13:16343831-16343581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:572-846
               
               
               Cow position:chr13:8555612-8555343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):20, 6

               
               
               Conread position:574-855
               
               
               Cow position:chr13:40722555-40722838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):19, 34

               
               
               Conread position:574-875
               
               
               Cow position:chr13:45726042-45725735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):148, 22

               
               
               Conread position:574-937
               
               
               Cow position:chr13:44202139-44201800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:232
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:574-941
               
               
               Cow position:chr13:18852226-18851875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):148, 19

               
               
               Conread position:574-948
               
               
               Cow position:chr13:20820690-20821057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:260
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):237, 11

               
               
               Conread position:574-951
               
               
               Cow position:chr13:22115858-22115452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:280
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):48, 22

               
               
               Conread position:574-958
               
               
               Cow position:chr13:18491749-18491377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:266
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):128, 84

               
               
               Conread position:574-959
               
               
               Cow position:chr13:5758191-5758564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 52

               
               
               Conread position:576-752
               
               
               Cow position:chr13:19178422-19178244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):16, 132

               
               
               Conread position:576-848
               
               
               Cow position:chr13:12614402-12614129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):42, 15

               
               
               Conread position:576-903
               
               
               Cow position:chr13:12408145-12408470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):72, 15

               
               
               Conread position:576-941
               
               
               Cow position:chr13:19223787-19223438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 15

               
               
               Conread position:576-941
               
               
               Cow position:chr13:26261652-26262005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 127

               
               
               Conread position:576-941
               
               
               Cow position:chr13:61976821-61977171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:251
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):284, 17

               
               
               Conread position:576-944
               
               
               Cow position:chr13:28139708-28139365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:241
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):331, 11

               
               
               Conread position:576-949
               
               
               Cow position:chr13:12448847-12449202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:258
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):72, 128

               
               
               Conread position:576-949
               
               
               Cow position:chr13:28552742-28552365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):10, 256

               
               
               Conread position:576-956
               
               
               Cow position:chr13:20088561-20088947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:264
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):94, 15

               
               
               Conread position:576-958
               
               
               Cow position:chr13:13504101-13504502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:259
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):22, 15

               
               
               Conread position:577-718
               
               
               Cow position:chr13:37516991-37517130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):15, 126

               
               
               Conread position:577-751
               
               
               Cow position:chr13:5752279-5752455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):15, 143

               
               
               Conread position:577-753
               
               
               Cow position:chr13:20041817-20041999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):15, 104

               
               
               Conread position:577-766
               
               
               Cow position:chr13:61990189-61990377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):31, 130

               
               
               Conread position:577-768
               
               
               Cow position:chr13:54093889-54093700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):15, 32

               
               
               Conread position:577-820
               
               
               Cow position:chr13:52929854-52929615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):9, 86

               
               
               Conread position:577-830
               
               
               Cow position:chr13:27493702-27493963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:181
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):21, 133

               
               
               Conread position:577-836
               
               
               Cow position:chr13:25531643-25531902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):15, 48

               
               
               Conread position:577-842
               
               
               Cow position:chr13:20563141-20562875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):16, 138

               
               
               Conread position:577-855
               
               
               Cow position:chr13:43829397-43829113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):15, 19

               
               
               Conread position:577-856
               
               
               Cow position:chr13:31814016-31813741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):15, 47

               
               
               Conread position:577-859
               
               
               Cow position:chr13:28683504-28683227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):15, 25

               
               
               Conread position:577-928
               
               
               Cow position:chr13:37521593-37521949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:246
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):47, 113

               
               
               Conread position:577-937
               
               
               Cow position:chr13:5060893-5060529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):12, 129

               
               
               Conread position:577-937
               
               
               Cow position:chr13:25926937-25926579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:248
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):15, 95

               
               
               Conread position:577-945
               
               
               Cow position:chr13:7076400-7076023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:262
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):89, 17

               
               
               Conread position:577-945
               
               
               Cow position:chr13:21287945-21288302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:254
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):146, 15

               
               
               Conread position:577-945
               
               
               Cow position:chr13:37592793-37593163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 145

               
               
               Conread position:577-949
               
               
               Cow position:chr13:20879686-20880046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:259
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):15, 67

               
               
               Conread position:577-952
               
               
               Cow position:chr13:52055454-52055817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 70

               
               
               Conread position:577-955
               
               
               Cow position:chr13:20378193-20378546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:270
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):161, 16

               
               
               Conread position:577-957
               
               
               Cow position:chr13:33256641-33256265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 45

               
               
               Conread position:577-958
               
               
               Cow position:chr13:23512512-23512150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:254
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):15, 119

               
               
               Conread position:577-958
               
               
               Cow position:chr13:43594970-43595337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 11

               
               
               Conread position:577-959
               
               
               Cow position:chr13:46112112-46111735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:256
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):50, 11

               
               
               Conread position:577-960
               
               
               Cow position:chr13:5671447-5671823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:266
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):15, 39

               
               
               Conread position:578-766
               
               
               Cow position:chr13:30026260-30026067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:579-704
               
               
               Cow position:chr13:48251843-48251968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):41, 17

               
               
               Conread position:579-875
               
               
               Cow position:chr13:20679489-20679188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):43, 10

               
               
               Conread position:579-930
               
               
               Cow position:chr13:17622424-17622081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:245
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):13, 47

               
               
               Conread position:579-951
               
               
               Cow position:chr13:48598053-48597686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 177

               
               
               Conread position:580-758
               
               
               Cow position:chr13:37946063-37946239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):46, 124

               
               
               Conread position:580-941
               
               
               Cow position:chr13:22085603-22085945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):142, 43

               
               
               Conread position:580-949
               
               
               Cow position:chr13:12875830-12876197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 79

               
               
               Conread position:581-699
               
               
               Cow position:chr13:60690585-60690704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:94
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:581-752
               
               
               Cow position:chr13:16711771-16711599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):11, 129

               
               
               Conread position:581-761
               
               
               Cow position:chr13:12682404-12682583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:581-843
               
               
               Cow position:chr13:6153642-6153903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):146, 125

               
               
               Conread position:581-851
               
               
               Cow position:chr13:17966068-17966336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:581-872
               
               
               Cow position:chr13:12546769-12547056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):11, 115

               
               
               Conread position:581-875
               
               
               Cow position:chr13:23856353-23856060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):7, 43

               
               
               Conread position:581-875
               
               
               Cow position:chr13:26369667-26369373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):11, 122

               
               
               Conread position:581-875
               
               
               Cow position:chr13:36771279-36771572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:213
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):134, 168

               
               
               Conread position:581-877
               
               
               Cow position:chr13:53566736-53566448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:581-932
               
               
               Cow position:chr13:18999683-18999327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 83

               
               
               Conread position:581-935
               
               
               Cow position:chr13:47186365-47186023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:240
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):5, 43

               
               
               Conread position:581-937
               
               
               Cow position:chr13:24586182-24585839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:581-939
               
               
               Cow position:chr13:20784729-20784383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:251
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:581-945
               
               
               Cow position:chr13:18696983-18696606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 55

               
               
               Conread position:581-946
               
               
               Cow position:chr13:34728696-34729059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:258
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):11, 75

               
               
               Conread position:581-955
               
               
               Cow position:chr13:19581946-19582308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:238
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):11, 46

               
               
               Conread position:581-955
               
               
               Cow position:chr13:20893494-20893874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:261
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):15, 85

               
               
               Conread position:582-940
               
               
               Cow position:chr13:20509871-20509515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):312, 80

               
               
               Conread position:582-951
               
               
               Cow position:chr13:9142432-9142052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:255
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):17, 228

               
               
               Conread position:584-855
               
               
               Cow position:chr13:15144234-15144495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):6, 41

               
               
               Conread position:584-893
               
               
               Cow position:chr13:43184736-43185049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):122, 23

               
               
               Conread position:584-949
               
               
               Cow position:chr13:14576345-14575994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 42

               
               
               Conread position:585-748
               
               
               Cow position:chr13:52199222-52199062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:585-752
               
               
               Cow position:chr13:5091529-5091697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):124, 151

               
               
               Conread position:585-816
               
               
               Cow position:chr13:11954974-11955209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):85, 41

               
               
               Conread position:585-845
               
               
               Cow position:chr13:15903152-15902903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):97, 38

               
               
               Conread position:585-860
               
               
               Cow position:chr13:11321480-11321753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):151, 39

               
               
               Conread position:585-949
               
               
               Cow position:chr13:2774263-2773894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:252
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):178, 38

               
               
               Conread position:585-949
               
               
               Cow position:chr13:45353182-45352806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:585-950
               
               
               Cow position:chr13:21107274-21106920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:248
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):75, 38

               
               
               Conread position:585-954
               
               
               Cow position:chr13:20473555-20473903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:260
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):138, 38

               
               
               Conread position:585-959
               
               
               Cow position:chr13:17568963-17569328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:260
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):31, 39

               
               
               Conread position:586-711
               
               
               Cow position:chr13:56275135-56275263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):41, 125

               
               
               Conread position:586-941
               
               
               Cow position:chr13:17437732-17438075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):11, 61

               
               
               Conread position:588-700
               
               
               Cow position:chr13:37980503-37980616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:94
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):38, 23

               
               
               Conread position:588-929
               
               
               Cow position:chr13:17338571-17338224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:588-941
               
               
               Cow position:chr13:41919022-41919374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):31, 73

               
               
               Conread position:588-941
               
               
               Cow position:chr13:42200751-42200407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:588-958
               
               
               Cow position:chr13:18846533-18846165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:248
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):125, 98

               
               
               Conread position:589-876
               
               
               Cow position:chr13:11096308-11096029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):37, 7

               
               
               Conread position:591-688
               
               
               Cow position:chr13:22025579-22025675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:82
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-706
               
               
               Cow position:chr13:5079094-5079207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:93
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:591-714
               
               
               Cow position:chr13:563013-563134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:101
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:591-736
               
               
               Cow position:chr13:6389510-6389368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):89, 33

               
               
               Conread position:591-748
               
               
               Cow position:chr13:3701567-3701414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:591-753
               
               
               Cow position:chr13:33517794-33517954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):131, 34

               
               
               Conread position:591-754
               
               
               Cow position:chr13:13809431-13809593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):24, 5

               
               
               Conread position:591-755
               
               
               Cow position:chr13:6975663-6975826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):111, 32

               
               
               Conread position:591-766
               
               
               Cow position:chr13:7790144-7789965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):105, 35

               
               
               Conread position:591-788
               
               
               Cow position:chr13:4420477-4420278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):33, 117

               
               
               Conread position:591-797
               
               
               Cow position:chr13:12618984-12619188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):131, 28

               
               
               Conread position:591-799
               
               
               Cow position:chr13:21039468-21039674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):26, 118

               
               
               Conread position:591-805
               
               
               Cow position:chr13:13306228-13306015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):35, 122

               
               
               Conread position:591-809
               
               
               Cow position:chr13:46181919-46181707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):131, 20

               
               
               Conread position:591-812
               
               
               Cow position:chr13:13176780-13176562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):177, 9

               
               
               Conread position:591-812
               
               
               Cow position:chr13:15884887-15885110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):17, 36

               
               
               Conread position:591-813
               
               
               Cow position:chr13:8524491-8524707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):130, 27

               
               
               Conread position:591-813
               
               
               Cow position:chr13:9593638-9593416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):111, 32

               
               
               Conread position:591-817
               
               
               Cow position:chr13:4464133-4463919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):132, 52

               
               
               Conread position:591-824
               
               
               Cow position:chr13:15528902-15529137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):132, 33

               
               
               Conread position:591-838
               
               
               Cow position:chr13:54344902-54344666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):76, 105

               
               
               Conread position:591-839
               
               
               Cow position:chr13:15110450-15110199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):113, 189

               
               
               Conread position:591-842
               
               
               Cow position:chr13:11381592-11381841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):132, 28

               
               
               Conread position:591-842
               
               
               Cow position:chr13:11460751-11460515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:591-848
               
               
               Cow position:chr13:8652308-8652567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:197
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):30, 12

               
               
               Conread position:591-848
               
               
               Cow position:chr13:20839693-20839442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):135, 33

               
               
               Conread position:591-848
               
               
               Cow position:chr13:37484144-37484403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):107, 32

               
               
               Conread position:591-855
               
               
               Cow position:chr13:39368085-39367828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):29, 56

               
               
               Conread position:591-855
               
               
               Cow position:chr13:43762299-43762038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:191
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):113, 32

               
               
               Conread position:591-855
               
               
               Cow position:chr13:48037751-48037492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):86, 32

               
               
               Conread position:591-860
               
               
               Cow position:chr13:21283580-21283840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):131, 33

               
               
               Conread position:591-862
               
               
               Cow position:chr13:34035492-34035229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):35, 79

               
               
               Conread position:591-866
               
               
               Cow position:chr13:8609421-8609689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):45, 35

               
               
               Conread position:591-866
               
               
               Cow position:chr13:20683991-20684269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):200, 32

               
               
               Conread position:591-866
               
               
               Cow position:chr13:56160300-56160588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):66, 128

               
               
               Conread position:591-867
               
               
               Cow position:chr13:60974213-60973937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):113, 184

               
               
               Conread position:591-873
               
               
               Cow position:chr13:15281807-15282083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):52, 119

               
               
               Conread position:591-874
               
               
               Cow position:chr13:11644064-11643789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):30, 60

               
               
               Conread position:591-874
               
               
               Cow position:chr13:34508003-34507736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):35, 57

               
               
               Conread position:591-875
               
               
               Cow position:chr13:14771587-14771301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-875
               
               
               Cow position:chr13:17439640-17439919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):207, 32

               
               
               Conread position:591-875
               
               
               Cow position:chr13:37640716-37640439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):35, 50

               
               
               Conread position:591-875
               
               
               Cow position:chr13:60429944-60430228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):135, 107

               
               
               Conread position:591-876
               
               
               Cow position:chr13:40652063-40651782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):35, 54

               
               
               Conread position:591-891
               
               
               Cow position:chr13:7663294-7663585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):139, 33

               
               
               Conread position:591-909
               
               
               Cow position:chr13:20666259-20666567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:224
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):118, 14

               
               
               Conread position:591-909
               
               
               Cow position:chr13:23479156-23478847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:222
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):131, 14

               
               
               Conread position:591-929
               
               
               Cow position:chr13:18929661-18929324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 95

               
               
               Conread position:591-929
               
               
               Cow position:chr13:39423951-39423626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):31, 107

               
               
               Conread position:591-930
               
               
               Cow position:chr13:12207173-12206859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):133, 33

               
               
               Conread position:591-935
               
               
               Cow position:chr13:11260399-11260070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:242
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):119, 63

               
               
               Conread position:591-937
               
               
               Cow position:chr13:6974293-6973953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 117

               
               
               Conread position:591-937
               
               
               Cow position:chr13:11061117-11060765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):28, 99

               
               
               Conread position:591-937
               
               
               Cow position:chr13:19022405-19022055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 32

               
               
               Conread position:591-937
               
               
               Cow position:chr13:24230342-24230001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 110

               
               
               Conread position:591-937
               
               
               Cow position:chr13:49503402-49503747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:233
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):132, 12

               
               
               Conread position:591-938
               
               
               Cow position:chr13:27525135-27525469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):165, 32

               
               
               Conread position:591-940
               
               
               Cow position:chr13:311560-311220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:236
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):109, 32

               
               
               Conread position:591-940
               
               
               Cow position:chr13:15991097-15991443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:243
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):28, 120

               
               
               Conread position:591-941
               
               
               Cow position:chr13:607135-607476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:243
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):32, 106

               
               
               Conread position:591-941
               
               
               Cow position:chr13:6079289-6079616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:235
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):182, 33

               
               
               Conread position:591-941
               
               
               Cow position:chr13:12670318-12670665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:243
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):121, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr13:17745369-17745045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 28

               
               
               Conread position:591-941
               
               
               Cow position:chr13:17821138-17821472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):120, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr13:18166863-18166519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 33

               
               
               Conread position:591-941
               
               
               Cow position:chr13:19882908-19883247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:239
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):132, 8

               
               
               Conread position:591-941
               
               
               Cow position:chr13:20497779-20497429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):126, 33

               
               
               Conread position:591-941
               
               
               Cow position:chr13:25695638-25695980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):29, 97

               
               
               Conread position:591-941
               
               
               Cow position:chr13:31808642-31808312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):35, 10

               
               
               Conread position:591-941
               
               
               Cow position:chr13:33875794-33875459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-941
               
               
               Cow position:chr13:37775097-37775419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:246
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):35, 57

               
               
               Conread position:591-941
               
               
               Cow position:chr13:46525315-46525642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):17, 33

               
               
               Conread position:591-941
               
               
               Cow position:chr13:54583007-54582661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 32

               
               
               Conread position:591-942
               
               
               Cow position:chr13:16014945-16014589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:250
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):28, 84

               
               
               Conread position:591-943
               
               
               Cow position:chr13:38329756-38329403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 32

               
               
               Conread position:591-944
               
               
               Cow position:chr13:3160521-3160186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):177, 33

               
               
               Conread position:591-944
               
               
               Cow position:chr13:9906863-9906512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:247
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):139, 33

               
               
               Conread position:591-944
               
               
               Cow position:chr13:10988945-10989290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 115

               
               
               Conread position:591-945
               
               
               Cow position:chr13:6663621-6663973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):118, 30

               
               
               Conread position:591-945
               
               
               Cow position:chr13:15872578-15872220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):12, 182

               
               
               Conread position:591-945
               
               
               Cow position:chr13:17114249-17114600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:242
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):132, 19

               
               
               Conread position:591-945
               
               
               Cow position:chr13:20174880-20174520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:254
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):32, 116

               
               
               Conread position:591-947
               
               
               Cow position:chr13:55583326-55582974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:247
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):35, 120

               
               
               Conread position:591-948
               
               
               Cow position:chr13:32017396-32017736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):139, 38

               
               
               Conread position:591-948
               
               
               Cow position:chr13:42114151-42113795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:241
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):35, 118

               
               
               Conread position:591-948
               
               
               Cow position:chr13:43480187-43479842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:253
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):125, 32

               
               
               Conread position:591-949
               
               
               Cow position:chr13:8374642-8374981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):131, 28

               
               
               Conread position:591-949
               
               
               Cow position:chr13:12045208-12045567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:245
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):30, 57

               
               
               Conread position:591-949
               
               
               Cow position:chr13:14878822-14879176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):34, 54

               
               
               Conread position:591-949
               
               
               Cow position:chr13:29831303-29831648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:250
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):28, 114

               
               
               Conread position:591-949
               
               
               Cow position:chr13:47007600-47007935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:244
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):350, 32

               
               
               Conread position:591-950
               
               
               Cow position:chr13:13089149-13088810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:253
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-950
               
               
               Cow position:chr13:14016439-14016784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:234
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):132, 101

               
               
               Conread position:591-950
               
               
               Cow position:chr13:23960683-23961029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:254
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):266, 32

               
               
               Conread position:591-950
               
               
               Cow position:chr13:34375400-34375036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:255
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):35, 122

               
               
               Conread position:591-951
               
               
               Cow position:chr13:5263159-5263503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):349, 58

               
               
               Conread position:591-951
               
               
               Cow position:chr13:5279055-5279431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 365

               
               
               Conread position:591-951
               
               
               Cow position:chr13:12574764-12574405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:242
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):155, 59

               
               
               Conread position:591-951
               
               
               Cow position:chr13:13261134-13260768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:246
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):115, 32

               
               
               Conread position:591-951
               
               
               Cow position:chr13:15288799-15289143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:255
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):11, 28

               
               
               Conread position:591-951
               
               
               Cow position:chr13:15869251-15868886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 35

               
               
               Conread position:591-951
               
               
               Cow position:chr13:21275985-21275633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 59

               
               
               Conread position:591-951
               
               
               Cow position:chr13:26480083-26480427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:245
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):53, 33

               
               
               Conread position:591-951
               
               
               Cow position:chr13:26698367-26698720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:244
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):45, 28

               
               
               Conread position:591-951
               
               
               Cow position:chr13:37617450-37617089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:232
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):219, 102

               
               
               Conread position:591-951
               
               
               Cow position:chr13:44003852-44003476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 64

               
               
               Conread position:591-951
               
               
               Cow position:chr13:45023082-45023446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 33

               
               
               Conread position:591-952
               
               
               Cow position:chr13:23667385-23667036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:243
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):82, 34

               
               
               Conread position:591-955
               
               
               Cow position:chr13:12200957-12201330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):93, 116

               
               
               Conread position:591-955
               
               
               Cow position:chr13:17021599-17021954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-955
               
               
               Cow position:chr13:25381092-25380714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:263
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):39, 105

               
               
               Conread position:591-956
               
               
               Cow position:chr13:52894277-52893920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:256
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):28, 84

               
               
               Conread position:591-958
               
               
               Cow position:chr13:6616622-6616993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 45

               
               
               Conread position:591-958
               
               
               Cow position:chr13:24754011-24753664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):177, 79

               
               
               Conread position:591-958
               
               
               Cow position:chr13:32283254-32282895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 33

               
               
               Conread position:591-959
               
               
               Cow position:chr13:37069479-37069114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 33

               
               
               Conread position:591-959
               
               
               Cow position:chr13:51940866-51940516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:258
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):117, 33

               
               
               Conread position:591-959
               
               
               Cow position:chr13:54702317-54701947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:255
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-959
               
               
               Cow position:chr13:57475286-57475651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:259
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):83, 78

               
               
               Conread position:591-960
               
               
               Cow position:chr13:37985624-37985979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:264
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):30, 14

               
               
               Conread position:592-766
               
               
               Cow position:chr13:21155364-21155536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):88, 32

               
               
               Conread position:592-808
               
               
               Cow position:chr13:18243992-18243778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):34, 115

               
               
               Conread position:592-820
               
               
               Cow position:chr13:13238706-13238481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):34, 53

               
               
               Conread position:592-842
               
               
               Cow position:chr13:6060881-6061126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):110, 31

               
               
               Conread position:592-842
               
               
               Cow position:chr13:43139096-43139332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):34, 10

               
               
               Conread position:592-848
               
               
               Cow position:chr13:52284938-52284692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):36, 64

               
               
               Conread position:592-866
               
               
               Cow position:chr13:56148666-56148379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):65, 127

               
               
               Conread position:592-872
               
               
               Cow position:chr13:49520693-49520971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):155, 32

               
               
               Conread position:592-875
               
               
               Cow position:chr13:11591875-11591600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):148, 78

               
               
               Conread position:592-902
               
               
               Cow position:chr13:52057673-52057383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):116, 31

               
               
               Conread position:592-916
               
               
               Cow position:chr13:17004466-17004788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):34, 71

               
               
               Conread position:592-922
               
               
               Cow position:chr13:34263240-34263567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:228
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):130, 31

               
               
               Conread position:592-924
               
               
               Cow position:chr13:52637410-52637101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:592-929
               
               
               Cow position:chr13:15974743-15974417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:228
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):34, 111

               
               
               Conread position:592-930
               
               
               Cow position:chr13:6441971-6442309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):16, 115

               
               
               Conread position:592-930
               
               
               Cow position:chr13:53195159-53195477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):31, 100

               
               
               Conread position:592-933
               
               
               Cow position:chr13:20605990-20606326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:231
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):82, 51

               
               
               Conread position:592-937
               
               
               Cow position:chr13:19393418-19393087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:246
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):108, 31

               
               
               Conread position:592-941
               
               
               Cow position:chr13:152083-151757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:592-941
               
               
               Cow position:chr13:3315549-3315899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):264, 16

               
               
               Conread position:592-941
               
               
               Cow position:chr13:15195075-15195414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:251
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):31, 119

               
               
               Conread position:592-941
               
               
               Cow position:chr13:17158746-17159095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:235
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):175, 32

               
               
               Conread position:592-941
               
               
               Cow position:chr13:21280358-21280714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):78, 32

               
               
               Conread position:592-941
               
               
               Cow position:chr13:25496135-25495796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):132, 114

               
               
               Conread position:592-941
               
               
               Cow position:chr13:34281805-34281468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:592-941
               
               
               Cow position:chr13:41806904-41806563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 31

               
               
               Conread position:592-941
               
               
               Cow position:chr13:56686561-56686230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:242
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):130, 32

               
               
               Conread position:592-948
               
               
               Cow position:chr13:6849059-6848704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:244
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):34, 117

               
               
               Conread position:592-948
               
               
               Cow position:chr13:7059600-7059238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:592-948
               
               
               Cow position:chr13:19023715-19024072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:236
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):34, 53

               
               
               Conread position:592-949
               
               
               Cow position:chr13:1155579-1155926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 32

               
               
               Conread position:592-949
               
               
               Cow position:chr13:1363823-1363465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:246
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):34, 105

               
               
               Conread position:592-949
               
               
               Cow position:chr13:6086775-6087134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:246
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):265, 27

               
               
               Conread position:592-949
               
               
               Cow position:chr13:7032416-7032064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):29, 53

               
               
               Conread position:592-949
               
               
               Cow position:chr13:13954259-13954617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 106

               
               
               Conread position:592-949
               
               
               Cow position:chr13:16292674-16292316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:244
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):31, 96

               
               
               Conread position:592-949
               
               
               Cow position:chr13:45604293-45604659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:246
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):130, 51

               
               
               Conread position:592-949
               
               
               Cow position:chr13:61047335-61046985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):34, 68

               
               
               Conread position:592-950
               
               
               Cow position:chr13:13338989-13338636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 117

               
               
               Conread position:592-950
               
               
               Cow position:chr13:14544247-14543913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:252
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):63, 32

               
               
               Conread position:592-950
               
               
               Cow position:chr13:25579058-25579419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 63

               
               
               Conread position:592-950
               
               
               Cow position:chr13:56155030-56155393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):130, 31

               
               
               Conread position:592-951
               
               
               Cow position:chr13:47964068-47964403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:260
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):309, 31

               
               
               Conread position:592-951
               
               
               Cow position:chr13:49805100-49804770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):176, 103

               
               
               Conread position:592-951
               
               
               Cow position:chr13:55674080-55674433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:592-955
               
               
               Cow position:chr13:13320913-13320574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):149, 31

               
               
               Conread position:592-957
               
               
               Cow position:chr13:13501494-13501841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):346, 31

               
               
               Conread position:592-958
               
               
               Cow position:chr13:10845722-10845385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:255
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):130, 34

               
               
               Conread position:592-958
               
               
               Cow position:chr13:15349133-15349477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:257
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):217, 32

               
               
               Conread position:592-958
               
               
               Cow position:chr13:21269451-21269811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:250
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):36, 104

               
               
               Conread position:593-688
               
               
               Cow position:chr13:2404867-2404773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:96
               
               
               Alignm identity:81
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:593-742
               
               
               Cow position:chr13:53070042-53070185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:593-816
               
               
               Cow position:chr13:1042833-1043061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:593-816
               
               
               Cow position:chr13:17613474-17613248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):33, 120

               
               
               Conread position:593-838
               
               
               Cow position:chr13:20649851-20650101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):33, 117

               
               
               Conread position:593-853
               
               
               Cow position:chr13:23270083-23270334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):129, 91

               
               
               Conread position:593-863
               
               
               Cow position:chr13:20231076-20231329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):133, 50

               
               
               Conread position:593-875
               
               
               Cow position:chr13:23166968-23167250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):123, 259

               
               
               Conread position:593-903
               
               
               Cow position:chr13:25547458-25547761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:217
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):139, 31

               
               
               Conread position:593-930
               
               
               Cow position:chr13:20217260-20217600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:239
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):30, 103

               
               
               Conread position:593-937
               
               
               Cow position:chr13:35526083-35526403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):129, 14

               
               
               Conread position:593-937
               
               
               Cow position:chr13:59170786-59170435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):33, 82

               
               
               Conread position:593-941
               
               
               Cow position:chr13:20880798-20881134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):115, 30

               
               
               Conread position:593-941
               
               
               Cow position:chr13:44323028-44322679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:250
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):113, 30

               
               
               Conread position:593-941
               
               
               Cow position:chr13:45594033-45593710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):27, 106

               
               
               Conread position:593-941
               
               
               Cow position:chr13:61188661-61188315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:235
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):29, 104

               
               
               Conread position:593-945
               
               
               Cow position:chr13:53574098-53573760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):344, 30

               
               
               Conread position:593-949
               
               
               Cow position:chr13:52284036-52283688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):33, 52

               
               
               Conread position:593-950
               
               
               Cow position:chr13:34261362-34261013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:255
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):48, 31

               
               
               Conread position:593-951
               
               
               Cow position:chr13:8362622-8362972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:257
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):25, 76

               
               
               Conread position:593-951
               
               
               Cow position:chr13:54388893-54389243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:244
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):129, 18

               
               
               Conread position:593-959
               
               
               Cow position:chr13:58043757-58043390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:240
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):26, 43

               
               
               Conread position:593-960
               
               
               Cow position:chr13:49022746-49023098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 30

               
               
               Conread position:594-831
               
               
               Cow position:chr13:8201359-8201590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):169, 32

               
               
               Conread position:594-855
               
               
               Cow position:chr13:46324658-46324918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):32, 102

               
               
               Conread position:594-855
               
               
               Cow position:chr13:55316062-55316328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):128, 29

               
               
               Conread position:594-927
               
               
               Cow position:chr13:18995256-18994923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:227
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):9, 157

               
               
               Conread position:594-937
               
               
               Cow position:chr13:17292006-17292337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):105, 29

               
               
               Conread position:594-960
               
               
               Cow position:chr13:9265705-9266080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:268
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):38, 24

               
               
               Conread position:595-793
               
               
               Cow position:chr13:10098865-10099056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:595-894
               
               
               Cow position:chr13:43919133-43919432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):48, 28

               
               
               Conread position:595-922
               
               
               Cow position:chr13:54418358-54418026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:222
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):32, 163

               
               
               Conread position:595-935
               
               
               Cow position:chr13:971767-972104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):104, 28

               
               
               Conread position:595-940
               
               
               Cow position:chr13:15041346-15041687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 115

               
               
               Conread position:596-736
               
               
               Cow position:chr13:16024716-16024577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):128, 110

               
               
               Conread position:596-806
               
               
               Cow position:chr13:9643761-9643969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):30, 70

               
               
               Conread position:596-813
               
               
               Cow position:chr13:34941528-34941739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):126, 37

               
               
               Conread position:596-879
               
               
               Cow position:chr13:25434995-25435278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):104, 28

               
               
               Conread position:596-937
               
               
               Cow position:chr13:37804004-37803670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):188, 27

               
               
               Conread position:596-941
               
               
               Cow position:chr13:18058121-18058460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 27

               
               
               Conread position:596-941
               
               
               Cow position:chr13:25817647-25817316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 27

               
               
               Conread position:596-958
               
               
               Cow position:chr13:35659878-35659525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:254
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):112, 27

               
               
               Conread position:597-848
               
               
               Cow position:chr13:37981622-37981868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):7, 48

               
               
               Conread position:597-873
               
               
               Cow position:chr13:50690272-50690548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):126, 105

               
               
               Conread position:597-875
               
               
               Cow position:chr13:37381930-37381650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:203
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):28, 115

               
               
               Conread position:597-938
               
               
               Cow position:chr13:20288454-20288128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:597-944
               
               
               Cow position:chr13:39826677-39826339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:231
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):102, 119

               
               
               Conread position:598-842
               
               
               Cow position:chr13:12202489-12202244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):96, 26

               
               
               Conread position:598-937
               
               
               Cow position:chr13:1569046-1568725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:231
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):101, 25

               
               
               Conread position:598-941
               
               
               Cow position:chr13:60375365-60375701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):125, 25

               
               
               Conread position:598-948
               
               
               Cow position:chr13:5910773-5911111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:248
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):28, 111

               
               
               Conread position:598-948
               
               
               Cow position:chr13:57449190-57448845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:233
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):23, 60

               
               
               Conread position:599-876
               
               
               Cow position:chr13:18172460-18172186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):123, 24

               
               
               Conread position:599-940
               
               
               Cow position:chr13:36877194-36876853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):96, 25

               
               
               Conread position:599-941
               
               
               Cow position:chr13:42860452-42860780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):101, 24

               
               
               Conread position:600-941
               
               
               Cow position:chr13:9800627-9800308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):122, 46

               
               
               Conread position:600-952
               
               
               Cow position:chr13:20261204-20261560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:244
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):158, 63

               
               
               Conread position:600-958
               
               
               Cow position:chr13:9846333-9846694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):77, 70

               
               
               Conread position:602-707
               
               
               Cow position:chr13:4514580-4514475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:85
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:602-955
               
               
               Cow position:chr13:19279209-19278868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 7

               
               
               Conread position:602-958
               
               
               Cow position:chr13:15194613-15194951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):119, 21

               
               
               Conread position:603-941
               
               
               Cow position:chr13:21135782-21136125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:235
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):119, 20

               
               
               Conread position:603-950
               
               
               Cow position:chr13:27550857-27550513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):30, 42

               
               
               Conread position:604-941
               
               
               Cow position:chr13:44278469-44278133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):97, 68

               
               
               Conread position:604-950
               
               
               Cow position:chr13:57002845-57002500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 102

               
               
               Conread position:604-955
               
               
               Cow position:chr13:1231764-1231415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:238
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):95, 105

               
               
               Conread position:604-956
               
               
               Cow position:chr13:9924127-9924479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:223
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):181, 90

               
               
               Conread position:604-956
               
               
               Cow position:chr13:19364361-19364017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:234
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):35, 48

               
               
               Conread position:604-959
               
               
               Cow position:chr13:867244-866899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:241
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):96, 20

               
               
               Conread position:606-808
               
               
               Cow position:chr13:53536191-53536392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):93, 19

               
               
               Conread position:606-940
               
               
               Cow position:chr13:20868639-20868957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):52, 32

               
               
               Conread position:607-869
               
               
               Cow position:chr13:56678129-56677869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):98, 43

               
               
               Conread position:607-925
               
               
               Cow position:chr13:20248623-20248324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):117, 75

               
               
               Conread position:607-951
               
               
               Cow position:chr13:54128479-54128822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 18

               
               
               Conread position:607-959
               
               
               Cow position:chr13:20357779-20358118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:238
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):67, 62

               
               
               Conread position:609-959
               
               
               Cow position:chr13:6189504-6189833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):333, 14

               
               
               Conread position:610-947
               
               
               Cow position:chr13:16038180-16038502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):8, 86

               
               
               Conread position:611-767
               
               
               Cow position:chr13:32826346-32826501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):111, 12

               
               
               Conread position:611-925
               
               
               Cow position:chr13:16714149-16714463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):11, 79

               
               
               Conread position:612-875
               
               
               Cow position:chr13:13765893-13765636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):110, 15

               
               
               Conread position:612-929
               
               
               Cow position:chr13:49476197-49475870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):14, 86

               
               
               Conread position:612-941
               
               
               Cow position:chr13:14967106-14967428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:224
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):11, 99

               
               
               Conread position:613-876
               
               
               Cow position:chr13:19320643-19320382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):109, 8

               
               
               Conread position:613-929
               
               
               Cow position:chr13:8667721-8667414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):92, 11

               
               
               Conread position:613-948
               
               
               Cow position:chr13:19240544-19240219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:224
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):109, 91

               
               
               Conread position:614-872
               
               
               Cow position:chr13:55728006-55727754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:616-941
               
               
               Cow position:chr13:11821259-11820947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:215
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):100, 47

               
               
               Conread position:616-955
               
               
               Cow position:chr13:28499962-28500293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):108, 52

               
               
               Conread position:617-873
               
               
               Cow position:chr13:37603247-37603489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):18, 79

               
               
               Conread position:617-944
               
               
               Cow position:chr13:12770087-12770409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:225
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):35, 11

               
               
               Conread position:618-937
               
               
               Cow position:chr13:15621918-15621600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):82, 139

               
               
               Conread position:618-941
               
               
               Cow position:chr13:46516164-46515846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:230
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):71, 89

               
               
               Conread position:618-951
               
               
               Cow position:chr13:620157-620472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):113, 48

               
               
               Conread position:618-959
               
               
               Cow position:chr13:10221049-10220726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):220, 28

               
               
               Conread position:619-937
               
               
               Cow position:chr13:46329501-46329812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:220
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):249, 0

               
               
               Conread position:619-941
               
               
               Cow position:chr13:15659377-15659062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:619-960
               
               
               Cow position:chr13:10924810-10925155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 214

               
               
               Conread position:620-865
               
               
               Cow position:chr13:46736314-46736074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):236, 86

               
               
               Conread position:620-950
               
               
               Cow position:chr13:23141958-23141647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:621-935
               
               
               Cow position:chr13:24155644-24155301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:238
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:624-941
               
               
               Cow position:chr13:7312601-7312933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:216
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):99, 49

               
               
               Conread position:624-951
               
               
               Cow position:chr13:21127246-21127564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:229
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):47, 19

               
               
               Conread position:625-927
               
               
               Cow position:chr13:19778751-19779054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):5, 82

               
               
               Conread position:625-941
               
               
               Cow position:chr13:7332903-7333225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):130, 96

               
               
               Conread position:625-944
               
               
               Cow position:chr13:25978094-25978410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):97, 70

               
               
               Conread position:628-929
               
               
               Cow position:chr13:50750960-50751253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):94, 78

               
               
               Conread position:628-941
               
               
               Cow position:chr13:56034765-56035070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:221
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):102, 74

               
               
               Conread position:628-948
               
               
               Cow position:chr13:16203763-16203444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):46, 75

               
               
               Conread position:628-949
               
               
               Cow position:chr13:17498311-17498000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:222
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):30, 80

               
               
               Conread position:631-866
               
               
               Cow position:chr13:51901683-51901442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:631-941
               
               
               Cow position:chr13:52477555-52477858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):92, 132

               
               
               Conread position:631-955
               
               
               Cow position:chr13:20137915-20137591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:228
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):77, 84

               
               
               Conread position:634-917
               
               
               Cow position:chr13:42229407-42229112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):68, 29

               
               
               Conread position:635-858
               
               
               Cow position:chr13:18005759-18005539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:636-942
               
               
               Cow position:chr13:40491299-40491003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:219
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):94, 49

               
               
               Conread position:637-941
               
               
               Cow position:chr13:27181115-27180824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:640-933
               
               
               Cow position:chr13:51127988-51128281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):118, 66

               
               
               Conread position:647-935
               
               
               Cow position:chr13:19610488-19610771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):50, 65

               
               
               Conread position:650-862
               
               
               Cow position:chr13:827314-827108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):73, 56

               
               
               Conread position:650-937
               
               
               Cow position:chr13:9385955-9386231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):178, 56

               
               
               Conread position:650-937
               
               
               Cow position:chr13:13196313-13196032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):206, 0

               
               
               Conread position:650-941
               
               
               Cow position:chr13:7149300-7149024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):60, 20

               
               
               Conread position:650-957
               
               
               Cow position:chr13:38872880-38873185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):199, 54

               
               
               Conread position:650-959
               
               
               Cow position:chr13:21170602-21170297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):14, 8

               
               
               Conread position:650-959
               
               
               Cow position:chr13:45073185-45073477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):73, 22

               
               
               Conread position:651-949
               
               
               Cow position:chr13:38109656-38109953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):79, 19

               
               
               Conread position:652-937
               
               
               Cow position:chr13:15757190-15756907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):71, 50

               
               
               Conread position:652-939
               
               
               Cow position:chr13:20115321-20115033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):78, 17

               
               
               Conread position:652-941
               
               
               Cow position:chr13:14411956-14411678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):178, 58

               
               
               Conread position:652-948
               
               
               Cow position:chr13:42672352-42672650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):70, 45

               
               
               Conread position:653-940
               
               
               Cow position:chr13:14940871-14940585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):105, 52

               
               
               Conread position:653-945
               
               
               Cow position:chr13:6861251-6860957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:210
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):69, 43

               
               
               Conread position:653-949
               
               
               Cow position:chr13:55162280-55161989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):52, 61

               
               
               Conread position:654-933
               
               
               Cow position:chr13:17563804-17563514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):195, 52

               
               
               Conread position:655-935
               
               
               Cow position:chr13:23215085-23214806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):137, 35

               
               
               Conread position:655-949
               
               
               Cow position:chr13:16003442-16003726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:658-929
               
               
               Cow position:chr13:6264859-6264597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:658-941
               
               
               Cow position:chr13:20314555-20314838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):27, 56

               
               
               Conread position:658-941
               
               
               Cow position:chr13:62008176-62007894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):46, 193

               
               
               Conread position:661-960
               
               
               Cow position:chr13:18197546-18197838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):62, 41

               
               
               Conread position:662-927
               
               
               Cow position:chr13:58045706-58045968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):65, 53

               
               
               Conread position:662-935
               
               
               Cow position:chr13:12673237-12673495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):61, 20

               
               
               Conread position:662-948
               
               
               Cow position:chr13:51080708-51080424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):44, 69

               
               
               Conread position:663-936
               
               
               Cow position:chr13:35557046-35557319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:192
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):37, 195

               
               
               Conread position:663-949
               
               
               Cow position:chr13:6889810-6889518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):46, 31

               
               
               Conread position:663-956
               
               
               Cow position:chr13:26100456-26100158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):89, 151

               
               
               Conread position:663-959
               
               
               Cow position:chr13:17822892-17823181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 46

               
               
               Conread position:664-948
               
               
               Cow position:chr13:50601647-50601926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:664-957
               
               
               Cow position:chr13:15257309-15257595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):10, 40

               
               
               Conread position:666-933
               
               
               Cow position:chr13:19174636-19174900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):56, 40

               
               
               Conread position:666-941
               
               
               Cow position:chr13:12423463-12423189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):56, 31

               
               
               Conread position:666-951
               
               
               Cow position:chr13:19427696-19427411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):58, 50

               
               
               Conread position:667-891
               
               
               Cow position:chr13:37503526-37503749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):36, 111

               
               
               Conread position:670-941
               
               
               Cow position:chr13:13471361-13471633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):60, 36

               
               
               Conread position:670-941
               
               
               Cow position:chr13:38035889-38035626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):18, 37

               
               
               Conread position:673-918
               
               
               Cow position:chr13:26720735-26720979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):57, 33

               
               
               Conread position:673-939
               
               
               Cow position:chr13:1147102-1147362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):234, 37

               
               
               Conread position:673-941
               
               
               Cow position:chr13:11103142-11103421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):47, 37

               
               
               Conread position:673-945
               
               
               Cow position:chr13:17350402-17350126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):58, 96

               
               
               Conread position:673-948
               
               
               Cow position:chr13:8425502-8425232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:673-948
               
               
               Cow position:chr13:21313624-21313897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):49, 37

               
               
               Conread position:673-949
               
               
               Cow position:chr13:52459433-52459694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):61, 41

               
               
               Conread position:673-951
               
               
               Cow position:chr13:21171523-21171795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:196
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):93, 29

               
               
               Conread position:673-959
               
               
               Cow position:chr13:41293220-41292936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):62, 142

               
               
               Conread position:673-959
               
               
               Cow position:chr13:52640901-52641182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):57, 33

               
               
               Conread position:677-896
               
               
               Cow position:chr13:20288699-20288480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):108, 176

               
               
               Conread position:677-949
               
               
               Cow position:chr13:584827-585095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):28, 9

               
               
               Conread position:677-951
               
               
               Cow position:chr13:17611505-17611776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):46, 20

               
               
               Conread position:679-957
               
               
               Cow position:chr13:34873633-34873355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):45, 6

               
               
               Conread position:681-937
               
               
               Cow position:chr13:55494479-55494728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):18, 173

               
               
               Conread position:685-931
               
               
               Cow position:chr13:18340573-18340327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):45, 171

               
               
               Conread position:686-959
               
               
               Cow position:chr13:41157440-41157168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):168, 20

               
               
               Conread position:687-941
               
               
               Cow position:chr13:24215635-24215890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):37, 76

               
               
               Conread position:690-938
               
               
               Cow position:chr13:40541074-40541319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):40, 7

               
               
               Conread position:694-949
               
               
               Cow position:chr13:45130544-45130295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):14, 32

               
               
               Conread position:697-941
               
               
               Cow position:chr13:43183278-43183031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):25, 128

               
               
               Conread position:697-960
               
               
               Cow position:chr13:55081168-55080905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):198, 24

               
               
               Conread position:702-927
               
               
               Cow position:chr13:15083681-15083462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):28, 12

               
               
               Conread position:706-956
               
               
               Cow position:chr13:30315523-30315272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):154, 12

               
               
               Conread position:706-959
               
               
               Cow position:chr13:15993403-15993152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:707-956
               
               
               Cow position:chr13:1462279-1462520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):16, 51

               
               
               Conread position:708-945
               
               
               Cow position:chr13:50457875-50457634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:708-947
               
               
               Cow position:chr13:55765161-55765395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):22, 129

               
               
               Conread position:708-955
               
               
               Cow position:chr13:14645068-14644826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):15, 50

               
               
               Conread position:709-939
               
               
               Cow position:chr13:2776304-2776073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:710-939
               
               
               Cow position:chr13:19598652-19598876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:710-945
               
               
               Cow position:chr13:33054357-33054590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):6, 127

               
               
               Conread position:710-949
               
               
               Cow position:chr13:41190119-41189880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):32, 5

               
               
               Conread position:710-951
               
               
               Cow position:chr13:11933588-11933832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):20, 38

               
               
               Conread position:710-951
               
               
               Cow position:chr13:47675920-47676159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):20, 160

               
               
               Conread position:710-959
               
               
               Cow position:chr13:15997049-15996804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):20, 146

               
               
               Conread position:710-959
               
               
               Cow position:chr13:21980961-21981201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):20, 59

               
               
               Conread position:711-930
               
               
               Cow position:chr13:18615398-18615169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:711-941
               
               
               Cow position:chr13:13775230-13775466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):128, 135

               
               
               Conread position:711-944
               
               
               Cow position:chr13:25941250-25941478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:711-950
               
               
               Cow position:chr13:11434561-11434800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):20, 122

               
               
               Conread position:712-954
               
               
               Cow position:chr13:52560099-52560341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):5, 131

               
               
               Conread position:713-950
               
               
               Cow position:chr13:14796218-14795983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):17, 41

               
               
               Conread position:714-935
               
               
               Cow position:chr13:56958979-56958769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):9, 59

               
               
               Conread position:714-940
               
               
               Cow position:chr13:17089509-17089725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):9, 124

               
               
               Conread position:714-941
               
               
               Cow position:chr13:37614180-37614411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):42, 164

               
               
               Conread position:715-936
               
               
               Cow position:chr13:52934437-52934220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):8, 121

               
               
               Conread position:716-948
               
               
               Cow position:chr13:12923882-12923654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:716-948
               
               
               Cow position:chr13:47243546-47243774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):6, 48

               
               
               Conread position:716-951
               
               
               Cow position:chr13:2340996-2340752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:716-959
               
               
               Cow position:chr13:49392934-49393179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):14, 195

               
               
               Conread position:723-941
               
               
               Cow position:chr13:8450331-8450120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:724-941
               
               
               Cow position:chr13:26726606-26726823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:724-948
               
               
               Cow position:chr13:28536322-28536541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:725-935
               
               
               Cow position:chr13:10727363-10727152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:726-941
               
               
               Cow position:chr13:17813469-17813258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:726-948
               
               
               Cow position:chr13:10522932-10522719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:726-949
               
               
               Cow position:chr13:48222550-48222770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):173, 0

               
               
               Conread position:728-941
               
               
               Cow position:chr13:53850820-53850607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):121, 133

               
               
               Conread position:729-937
               
               
               Cow position:chr13:16908212-16908004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:729-944
               
               
               Cow position:chr13:4790122-4790339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):26, 46

               
               
               Conread position:729-952
               
               
               Cow position:chr13:6486256-6486478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):130, 34

               
               
               Conread position:730-930
               
               
               Cow position:chr13:4404525-4404332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:730-951
               
               
               Cow position:chr13:8699743-8699967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:731-937
               
               
               Cow position:chr13:6926510-6926303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:731-948
               
               
               Cow position:chr13:50768589-50768371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):148, 41

               
               
               Conread position:731-951
               
               
               Cow position:chr13:49356056-49356272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:735-951
               
               
               Cow position:chr13:30148574-30148780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):204, 122

               
               
               Conread position:739-959
               
               
               Cow position:chr13:9124909-9124698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:740-941
               
               
               Cow position:chr13:45499213-45499018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):90, 85

               
               
               Conread position:740-949
               
               
               Cow position:chr13:17845472-17845263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):94, 85

               
               
               Conread position:741-941
               
               
               Cow position:chr13:43839693-43839900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:741-945
               
               
               Cow position:chr13:11410697-11410491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):73, 116

               
               
               Conread position:741-960
               
               
               Cow position:chr13:1791443-1791662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:743-941
               
               
               Cow position:chr13:16099140-16099342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:745-937
               
               
               Cow position:chr13:33854705-33854890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:745-950
               
               
               Cow position:chr13:52913852-52913654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):18, 31

               
               
               Conread position:745-951
               
               
               Cow position:chr13:31507465-31507665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):165, 101

               
               
               Conread position:747-948
               
               
               Cow position:chr13:50646654-50646848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:751-959
               
               
               Cow position:chr13:2528975-2529183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):17, 41

               
               
               Conread position:755-941
               
               
               Cow position:chr13:28376591-28376775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):13, 19

               
               
               Conread position:756-951
               
               
               Cow position:chr13:6113558-6113754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):101, 189

               
               
               Conread position:757-951
               
               
               Cow position:chr13:51107086-51106901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):32, 20

               
               
               Conread position:764-949
               
               
               Cow position:chr13:4968588-4968773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:767-941
               
               
               Cow position:chr13:53619961-53619787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:772-941
               
               
               Cow position:chr13:6972335-6972167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:772-941
               
               
               Cow position:chr13:21955113-21955283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:772-949
               
               
               Cow position:chr13:1347214-1347389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):120, 80

               
               
               Conread position:772-951
               
               
               Cow position:chr13:26377464-26377644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):44, 66

               
               
               Conread position:772-959
               
               
               Cow position:chr13:21246757-21246945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):176, 0

               
               
               Conread position:773-941
               
               
               Cow position:chr13:8367666-8367505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:773-941
               
               
               Cow position:chr13:16163533-16163375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:773-945
               
               
               Cow position:chr13:16711300-16711130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):156, 77

               
               
               Conread position:773-945
               
               
               Cow position:chr13:17057896-17058073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):95, 79

               
               
               Conread position:773-949
               
               
               Cow position:chr13:5175548-5175379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:773-949
               
               
               Cow position:chr13:18997339-18997176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:773-951
               
               
               Cow position:chr13:9707798-9707970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):132, 39

               
               
               Conread position:773-957
               
               
               Cow position:chr13:46298805-46298983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):83, 126

               
               
               Conread position:773-958
               
               
               Cow position:chr13:43811891-43811701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):76, 177

               
               
               Conread position:774-896
               
               
               Cow position:chr13:37980807-37980927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:774-935
               
               
               Cow position:chr13:20795259-20795414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:774-936
               
               
               Cow position:chr13:16525273-16525436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):100, 27

               
               
               Conread position:774-941
               
               
               Cow position:chr13:33518006-33518172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):89, 38

               
               
               Conread position:774-948
               
               
               Cow position:chr13:8637648-8637474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:774-949
               
               
               Cow position:chr13:27871723-27871550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):48, 77

               
               
               Conread position:774-949
               
               
               Cow position:chr13:37946439-37946606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:774-955
               
               
               Cow position:chr13:19178128-19177940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:774-956
               
               
               Cow position:chr13:1339191-1339372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):169, 0

               
               
               Conread position:774-956
               
               
               Cow position:chr13:6951529-6951352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:774-959
               
               
               Cow position:chr13:13796861-13797048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:774-959
               
               
               Cow position:chr13:23823084-23823264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):174, 52

               
               
               Conread position:774-960
               
               
               Cow position:chr13:15162682-15162868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:775-933
               
               
               Cow position:chr13:52027188-52027341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):126, 73

               
               
               Conread position:775-939
               
               
               Cow position:chr13:10535039-10534877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):58, 106

               
               
               Conread position:775-941
               
               
               Cow position:chr13:23685050-23685216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:775-941
               
               
               Cow position:chr13:25520966-25521137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:775-941
               
               
               Cow position:chr13:54127878-54128044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):74, 46

               
               
               Conread position:775-944
               
               
               Cow position:chr13:3149482-3149649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:775-945
               
               
               Cow position:chr13:22345325-22345492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):123, 82

               
               
               Conread position:775-945
               
               
               Cow position:chr13:48127057-48126887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:775-948
               
               
               Cow position:chr13:28695809-28695638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:775-949
               
               
               Cow position:chr13:28605442-28605616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:775-950
               
               
               Cow position:chr13:20520264-20520087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:775-951
               
               
               Cow position:chr13:14351531-14351361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:775-951
               
               
               Cow position:chr13:23399715-23399543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:775-951
               
               
               Cow position:chr13:23478850-23478675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):167, 8

               
               
               Conread position:775-951
               
               
               Cow position:chr13:43342517-43342344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:775-952
               
               
               Cow position:chr13:16476806-16476630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):164, 0

               
               
               Conread position:775-952
               
               
               Cow position:chr13:43576963-43576786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:775-957
               
               
               Cow position:chr13:3153699-3153517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):173, 77

               
               
               Conread position:775-959
               
               
               Cow position:chr13:11147006-11146822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:775-959
               
               
               Cow position:chr13:21024936-21024749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):82, 31

               
               
               Conread position:775-959
               
               
               Cow position:chr13:57770037-57770214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:775-960
               
               
               Cow position:chr13:369174-369360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):168, 48

               
               
               Conread position:775-960
               
               
               Cow position:chr13:10279875-10279688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):7, 142

               
               
               Conread position:775-960
               
               
               Cow position:chr13:17624271-17624085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):109, 53

               
               
               Conread position:775-960
               
               
               Cow position:chr13:23975218-23975401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):170, 36

               
               
               Conread position:775-960
               
               
               Cow position:chr13:24107599-24107779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):174, 80

               
               
               Conread position:775-960
               
               
               Cow position:chr13:26959848-26960032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):17, 92

               
               
               Conread position:776-941
               
               
               Cow position:chr13:19588820-19588655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):52, 57

               
               
               Conread position:776-941
               
               
               Cow position:chr13:28081670-28081503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:776-950
               
               
               Cow position:chr13:29665969-29665794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):164, 0

               
               
               Conread position:776-960
               
               
               Cow position:chr13:39347278-39347460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):172, 11

               
               
               Conread position:777-951
               
               
               Cow position:chr13:13781127-13780953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):71, 44

               
               
               Conread position:779-955
               
               
               Cow position:chr13:17787678-17787854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):62, 95

               
               
               Conread position:780-941
               
               
               Cow position:chr13:5659823-5659978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:780-941
               
               
               Cow position:chr13:9108731-9108886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):118, 61

               
               
               Conread position:780-941
               
               
               Cow position:chr13:9551305-9551150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:780-945
               
               
               Cow position:chr13:31398403-31398240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:780-948
               
               
               Cow position:chr13:58662195-58662022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:780-949
               
               
               Cow position:chr13:22729458-22729627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:780-949
               
               
               Cow position:chr13:62251900-62252066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:780-950
               
               
               Cow position:chr13:56019050-56019219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:781-941
               
               
               Cow position:chr13:10986558-10986722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:781-959
               
               
               Cow position:chr13:8537765-8537585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):162, 0

               
               
               Conread position:782-941
               
               
               Cow position:chr13:24094372-24094530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:782-944
               
               
               Cow position:chr13:17044571-17044409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:782-944
               
               
               Cow position:chr13:53357775-53357613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:782-949
               
               
               Cow position:chr13:26316944-26317112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:782-950
               
               
               Cow position:chr13:46391297-46391133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:782-954
               
               
               Cow position:chr13:27027960-27028131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):78, 87

               
               
               Conread position:782-959
               
               
               Cow position:chr13:2776801-2776624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):155, 7

               
               
               Conread position:782-959
               
               
               Cow position:chr13:40483037-40483212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):163, 55

               
               
               Conread position:783-939
               
               
               Cow position:chr13:46347075-46346919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-941
               
               
               Cow position:chr13:37554932-37555084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:783-955
               
               
               Cow position:chr13:42302098-42302270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):165, 45

               
               
               Conread position:783-960
               
               
               Cow position:chr13:23805076-23805253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):137, 156

               
               
               Conread position:784-949
               
               
               Cow position:chr13:43102923-43102760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:784-951
               
               
               Cow position:chr13:22046071-22046235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):153, 104

               
               
               Conread position:787-936
               
               
               Cow position:chr13:8682392-8682243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:787-937
               
               
               Cow position:chr13:25313212-25313358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:787-951
               
               
               Cow position:chr13:20854519-20854683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):72, 54

               
               
               Conread position:788-941
               
               
               Cow position:chr13:48370365-48370513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:790-941
               
               
               Cow position:chr13:3387854-3388005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:790-959
               
               
               Cow position:chr13:20789583-20789750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:791-948
               
               
               Cow position:chr13:242568-242412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):107, 119

               
               
               Conread position:791-952
               
               
               Cow position:chr13:15114404-15114241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):93, 87

               
               
               Conread position:792-939
               
               
               Cow position:chr13:24591529-24591383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:792-945
               
               
               Cow position:chr13:20042328-20042481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:793-927
               
               
               Cow position:chr13:8423336-8423202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:793-945
               
               
               Cow position:chr13:55007841-55007987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:793-959
               
               
               Cow position:chr13:55327372-55327207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):108, 28

               
               
               Conread position:804-959
               
               
               Cow position:chr13:23680732-23680577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:811-944
               
               
               Cow position:chr13:43577904-43577771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:102
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:811-947
               
               
               Cow position:chr13:52929348-52929212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:539-767
               
               
               Cow position:chr14:33828398-33828176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):32, 11

               
               
               Conread position:545-937
               
               
               Cow position:chr14:8786315-8786690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:269
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):21, 110

               
               
               Conread position:547-928
               
               
               Cow position:chr14:13582526-13582899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:250
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):176, 7

               
               
               Conread position:560-870
               
               
               Cow position:chr14:44848155-44848457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):194, 12

               
               
               Conread position:562-700
               
               
               Cow position:chr14:33538702-33538844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):13, 7

               
               
               Conread position:562-952
               
               
               Cow position:chr14:45052662-45052270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:261
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):32, 149

               
               
               Conread position:566-865
               
               
               Cow position:chr14:16834546-16834239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:207
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):77, 19

               
               
               Conread position:566-941
               
               
               Cow position:chr14:5996028-5995648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):31, 46

               
               
               Conread position:566-941
               
               
               Cow position:chr14:17755774-17755419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:254
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):40, 19

               
               
               Conread position:566-949
               
               
               Cow position:chr14:19850816-19851193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:254
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):27, 37

               
               
               Conread position:566-951
               
               
               Cow position:chr14:41749547-41749923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:263
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):85, 19

               
               
               Conread position:566-955
               
               
               Cow position:chr14:20010095-20010488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 59

               
               
               Conread position:566-960
               
               
               Cow position:chr14:20826688-20826315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:262
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):21, 58

               
               
               Conread position:568-960
               
               
               Cow position:chr14:31130166-31130556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:270
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):25, 62

               
               
               Conread position:569-846
               
               
               Cow position:chr14:18904405-18904671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:569-959
               
               
               Cow position:chr14:20932821-20932448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:266
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):148, 21

               
               
               Conread position:571-960
               
               
               Cow position:chr14:19618543-19618919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 54

               
               
               Conread position:574-713
               
               
               Cow position:chr14:41756471-41756324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:574-766
               
               
               Cow position:chr14:33643579-33643765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):148, 22

               
               
               Conread position:574-851
               
               
               Cow position:chr14:49086517-49086237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):17, 128

               
               
               Conread position:574-941
               
               
               Cow position:chr14:46973641-46973284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:253
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):150, 132

               
               
               Conread position:574-941
               
               
               Cow position:chr14:48740666-48741023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:250
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):24, 51

               
               
               Conread position:574-959
               
               
               Cow position:chr14:50589178-50589566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:272
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):18, 117

               
               
               Conread position:576-944
               
               
               Cow position:chr14:38530165-38529819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):109, 16

               
               
               Conread position:576-959
               
               
               Cow position:chr14:26628323-26628698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:257
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):122, 15

               
               
               Conread position:577-700
               
               
               Cow position:chr14:12484100-12484221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:96
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:577-820
               
               
               Cow position:chr14:29030033-29029790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):15, 120

               
               
               Conread position:577-842
               
               
               Cow position:chr14:25403741-25403996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):10, 19

               
               
               Conread position:577-860
               
               
               Cow position:chr14:21964323-21964058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):10, 126

               
               
               Conread position:577-874
               
               
               Cow position:chr14:4991201-4990909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):19, 48

               
               
               Conread position:577-929
               
               
               Cow position:chr14:23712889-23712550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:248
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):15, 47

               
               
               Conread position:577-941
               
               
               Cow position:chr14:43046349-43046019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:246
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):10, 24

               
               
               Conread position:577-944
               
               
               Cow position:chr14:38379222-38378844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:261
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):188, 47

               
               
               Conread position:577-948
               
               
               Cow position:chr14:12244181-12244545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 24

               
               
               Conread position:577-948
               
               
               Cow position:chr14:24237027-24236658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 95

               
               
               Conread position:577-949
               
               
               Cow position:chr14:15518175-15518568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:268
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):19, 151

               
               
               Conread position:577-950
               
               
               Cow position:chr14:14621972-14622334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:258
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):11, 128

               
               
               Conread position:577-958
               
               
               Cow position:chr14:20666822-20667183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:268
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):15, 47

               
               
               Conread position:577-959
               
               
               Cow position:chr14:10609892-10609503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 75

               
               
               Conread position:578-700
               
               
               Cow position:chr14:50518773-50518894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:99
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:578-753
               
               
               Cow position:chr14:24992023-24991850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):144, 130

               
               
               Conread position:578-848
               
               
               Cow position:chr14:1868184-1868450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):44, 17

               
               
               Conread position:578-860
               
               
               Cow position:chr14:20600584-20600306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):144, 23

               
               
               Conread position:578-875
               
               
               Cow position:chr14:37883717-37884012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):41, 10

               
               
               Conread position:578-933
               
               
               Cow position:chr14:7959971-7959649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:239
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):42, 70

               
               
               Conread position:578-948
               
               
               Cow position:chr14:12342612-12343007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:265
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:579-875
               
               
               Cow position:chr14:26097490-26097787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):8, 83

               
               
               Conread position:579-935
               
               
               Cow position:chr14:19593937-19594286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:249
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):48, 70

               
               
               Conread position:579-948
               
               
               Cow position:chr14:41809456-41809818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 6

               
               
               Conread position:580-903
               
               
               Cow position:chr14:37447271-37447587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):142, 99

               
               
               Conread position:580-941
               
               
               Cow position:chr14:1715927-1715571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):87, 11

               
               
               Conread position:581-707
               
               
               Cow position:chr14:12613895-12614023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:581-842
               
               
               Cow position:chr14:29632688-29632942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:581-848
               
               
               Cow position:chr14:48412682-48412949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):11, 44

               
               
               Conread position:581-851
               
               
               Cow position:chr14:50055596-50055329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):10, 124

               
               
               Conread position:581-857
               
               
               Cow position:chr14:14187532-14187255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:193
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):17, 7

               
               
               Conread position:581-860
               
               
               Cow position:chr14:26490545-26490821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:205
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):11, 30

               
               
               Conread position:581-872
               
               
               Cow position:chr14:37131853-37131571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:581-873
               
               
               Cow position:chr14:16033205-16032920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):132, 42

               
               
               Conread position:581-911
               
               
               Cow position:chr14:41128088-41127779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:229
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:581-927
               
               
               Cow position:chr14:8101987-8101654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):11, 44

               
               
               Conread position:581-930
               
               
               Cow position:chr14:48427271-48426926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:235
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:581-930
               
               
               Cow position:chr14:48689724-48689382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):5, 44

               
               
               Conread position:581-941
               
               
               Cow position:chr14:6735662-6736025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 66

               
               
               Conread position:581-949
               
               
               Cow position:chr14:7290989-7290634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:247
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):141, 43

               
               
               Conread position:581-957
               
               
               Cow position:chr14:7480215-7479829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:259
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):25, 123

               
               
               Conread position:582-941
               
               
               Cow position:chr14:45276108-45275757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:236
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):117, 200

               
               
               Conread position:585-754
               
               
               Cow position:chr14:39422397-39422566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):34, 52

               
               
               Conread position:585-819
               
               
               Cow position:chr14:33338287-33338513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):111, 38

               
               
               Conread position:585-846
               
               
               Cow position:chr14:48961772-48961517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):33, 101

               
               
               Conread position:585-849
               
               
               Cow position:chr14:5836094-5835844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):137, 34

               
               
               Conread position:585-873
               
               
               Cow position:chr14:18657409-18657699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:201
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):14, 140

               
               
               Conread position:585-879
               
               
               Cow position:chr14:43249775-43249495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):41, 92

               
               
               Conread position:585-935
               
               
               Cow position:chr14:44742189-44742524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:229
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):35, 96

               
               
               Conread position:585-941
               
               
               Cow position:chr14:8541017-8541364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:245
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):34, 125

               
               
               Conread position:585-941
               
               
               Cow position:chr14:20640434-20640786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 38

               
               
               Conread position:585-944
               
               
               Cow position:chr14:15492789-15492429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:246
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):137, 38

               
               
               Conread position:585-949
               
               
               Cow position:chr14:35420568-35420927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 111

               
               
               Conread position:585-950
               
               
               Cow position:chr14:13385563-13385200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 75

               
               
               Conread position:585-951
               
               
               Cow position:chr14:32452446-32452084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 119

               
               
               Conread position:585-958
               
               
               Cow position:chr14:42154771-42155143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:262
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):115, 38

               
               
               Conread position:585-959
               
               
               Cow position:chr14:48446970-48447342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:254
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):138, 117

               
               
               Conread position:589-707
               
               
               Cow position:chr14:24786128-24786012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):110, 7

               
               
               Conread position:589-860
               
               
               Cow position:chr14:12035596-12035332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):135, 8

               
               
               Conread position:590-936
               
               
               Cow position:chr14:23080577-23080906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:240
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):116, 13

               
               
               Conread position:591-706
               
               
               Cow position:chr14:28924573-28924458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:94
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:591-714
               
               
               Cow position:chr14:19740081-19740208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:591-720
               
               
               Cow position:chr14:19222069-19221940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:99
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:591-746
               
               
               Cow position:chr14:28090788-28090940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):135, 115

               
               
               Conread position:591-752
               
               
               Cow position:chr14:27312613-27312452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):29, 52

               
               
               Conread position:591-752
               
               
               Cow position:chr14:37435108-37435274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):13, 70

               
               
               Conread position:591-761
               
               
               Cow position:chr14:21284814-21284642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):36, 105

               
               
               Conread position:591-766
               
               
               Cow position:chr14:14581053-14580884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:591-766
               
               
               Cow position:chr14:33326205-33326380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):30, 106

               
               
               Conread position:591-766
               
               
               Cow position:chr14:38296092-38296267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):31, 17

               
               
               Conread position:591-816
               
               
               Cow position:chr14:24796240-24796468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):86, 32

               
               
               Conread position:591-816
               
               
               Cow position:chr14:33773867-33774082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):29, 56

               
               
               Conread position:591-820
               
               
               Cow position:chr14:41325253-41325486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):94, 22

               
               
               Conread position:591-837
               
               
               Cow position:chr14:25385701-25385943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):177, 44

               
               
               Conread position:591-838
               
               
               Cow position:chr14:10702646-10702896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):124, 104

               
               
               Conread position:591-840
               
               
               Cow position:chr14:5573129-5572883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):35, 16

               
               
               Conread position:591-842
               
               
               Cow position:chr14:20384796-20385046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):44, 32

               
               
               Conread position:591-842
               
               
               Cow position:chr14:39778937-39778691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):139, 32

               
               
               Conread position:591-848
               
               
               Cow position:chr14:17841102-17841358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):83, 33

               
               
               Conread position:591-848
               
               
               Cow position:chr14:33309324-33309570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):84, 16

               
               
               Conread position:591-855
               
               
               Cow position:chr14:19372528-19372265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-859
               
               
               Cow position:chr14:36554968-36555224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):36, 95

               
               
               Conread position:591-860
               
               
               Cow position:chr14:40283807-40283539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:194
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):29, 59

               
               
               Conread position:591-864
               
               
               Cow position:chr14:16256953-16256676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-869
               
               
               Cow position:chr14:25779278-25779015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:591-870
               
               
               Cow position:chr14:19129698-19129417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 125

               
               
               Conread position:591-872
               
               
               Cow position:chr14:19394547-19394272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):131, 105

               
               
               Conread position:591-874
               
               
               Cow position:chr14:39618188-39618469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):83, 70

               
               
               Conread position:591-875
               
               
               Cow position:chr14:8750262-8749981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:192
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):118, 32

               
               
               Conread position:591-875
               
               
               Cow position:chr14:33830484-33830208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:591-875
               
               
               Cow position:chr14:45605278-45605006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):176, 33

               
               
               Conread position:591-880
               
               
               Cow position:chr14:15054802-15055088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-886
               
               
               Cow position:chr14:30662174-30661892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):267, 111

               
               
               Conread position:591-898
               
               
               Cow position:chr14:28795860-28795556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):35, 54

               
               
               Conread position:591-909
               
               
               Cow position:chr14:41479473-41479788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:215
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):35, 90

               
               
               Conread position:591-925
               
               
               Cow position:chr14:1646005-1646325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:230
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):227, 28

               
               
               Conread position:591-927
               
               
               Cow position:chr14:40165609-40165286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):265, 27

               
               
               Conread position:591-929
               
               
               Cow position:chr14:12520121-12520449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:232
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):139, 56

               
               
               Conread position:591-929
               
               
               Cow position:chr14:24608153-24607821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:240
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-929
               
               
               Cow position:chr14:26433057-26433394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:235
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-930
               
               
               Cow position:chr14:40329631-40329295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:239
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):35, 69

               
               
               Conread position:591-930
               
               
               Cow position:chr14:48495962-48496293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):16, 40

               
               
               Conread position:591-935
               
               
               Cow position:chr14:25002221-25001881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:225
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):271, 33

               
               
               Conread position:591-937
               
               
               Cow position:chr14:5630348-5630015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:238
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):139, 32

               
               
               Conread position:591-937
               
               
               Cow position:chr14:27919550-27919888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):27, 21

               
               
               Conread position:591-937
               
               
               Cow position:chr14:41966427-41966072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:246
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-938
               
               
               Cow position:chr14:16237319-16237664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 63

               
               
               Conread position:591-938
               
               
               Cow position:chr14:24981644-24981299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:242
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):36, 119

               
               
               Conread position:591-939
               
               
               Cow position:chr14:17899676-17899324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:247
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):28, 96

               
               
               Conread position:591-940
               
               
               Cow position:chr14:18345547-18345880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:246
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-940
               
               
               Cow position:chr14:28114999-28115347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr14:1802928-1803276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:246
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):132, 81

               
               
               Conread position:591-941
               
               
               Cow position:chr14:5222103-5222442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:246
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):31, 16

               
               
               Conread position:591-941
               
               
               Cow position:chr14:10078454-10078097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr14:15313741-15313401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:237
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):28, 54

               
               
               Conread position:591-941
               
               
               Cow position:chr14:21933154-21933501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr14:26442155-26442503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:244
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):122, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr14:33247246-33247577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:591-941
               
               
               Cow position:chr14:33791373-33791036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:243
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):132, 33

               
               
               Conread position:591-941
               
               
               Cow position:chr14:36437300-36437646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:240
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):35, 21

               
               
               Conread position:591-941
               
               
               Cow position:chr14:40230451-40230792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 102

               
               
               Conread position:591-941
               
               
               Cow position:chr14:42330538-42330189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:239
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):177, 33

               
               
               Conread position:591-942
               
               
               Cow position:chr14:35381777-35381429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:244
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):62, 33

               
               
               Conread position:591-943
               
               
               Cow position:chr14:50362985-50362633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 63

               
               
               Conread position:591-944
               
               
               Cow position:chr14:8867375-8867721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:222
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:591-944
               
               
               Cow position:chr14:18941116-18941448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:591-944
               
               
               Cow position:chr14:28304602-28304947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 55

               
               
               Conread position:591-946
               
               
               Cow position:chr14:22989219-22988873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 16

               
               
               Conread position:591-948
               
               
               Cow position:chr14:6490516-6490867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):35, 111

               
               
               Conread position:591-948
               
               
               Cow position:chr14:12667919-12667565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:238
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):35, 107

               
               
               Conread position:591-948
               
               
               Cow position:chr14:28378555-28378194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 85

               
               
               Conread position:591-949
               
               
               Cow position:chr14:20016514-20016875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 134

               
               
               Conread position:591-949
               
               
               Cow position:chr14:20712500-20712847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 133

               
               
               Conread position:591-949
               
               
               Cow position:chr14:38921136-38920792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):35, 21

               
               
               Conread position:591-949
               
               
               Cow position:chr14:47609403-47609749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:240
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):35, 54

               
               
               Conread position:591-949
               
               
               Cow position:chr14:48838782-48838426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:239
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):310, 32

               
               
               Conread position:591-950
               
               
               Cow position:chr14:3195035-3194706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):352, 32

               
               
               Conread position:591-950
               
               
               Cow position:chr14:19207048-19206698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:238
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):35, 77

               
               
               Conread position:591-950
               
               
               Cow position:chr14:38143925-38144276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:591-951
               
               
               Cow position:chr14:2974908-2975252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:253
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):31, 56

               
               
               Conread position:591-951
               
               
               Cow position:chr14:12036658-12036996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:249
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):141, 59

               
               
               Conread position:591-951
               
               
               Cow position:chr14:16549817-16550161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:252
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-951
               
               
               Cow position:chr14:26116248-26115892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 115

               
               
               Conread position:591-951
               
               
               Cow position:chr14:39770046-39770388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):83, 33

               
               
               Conread position:591-951
               
               
               Cow position:chr14:41211040-41210698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:257
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):116, 32

               
               
               Conread position:591-958
               
               
               Cow position:chr14:15997580-15997927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:256
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):129, 52

               
               
               Conread position:591-958
               
               
               Cow position:chr14:20110536-20110896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 32

               
               
               Conread position:591-960
               
               
               Cow position:chr14:36289613-36289967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:259
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):111, 73

               
               
               Conread position:591-960
               
               
               Cow position:chr14:47672698-47673051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):56, 33

               
               
               Conread position:592-736
               
               
               Cow position:chr14:38355371-38355228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):133, 35

               
               
               Conread position:592-781
               
               
               Cow position:chr14:24683942-24684132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):24, 78

               
               
               Conread position:592-820
               
               
               Cow position:chr14:23107515-23107284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:592-847
               
               
               Cow position:chr14:35018569-35018819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:184
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):129, 31

               
               
               Conread position:592-851
               
               
               Cow position:chr14:26190913-26191173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):33, 54

               
               
               Conread position:592-860
               
               
               Cow position:chr14:39037422-39037147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):52, 188

               
               
               Conread position:592-874
               
               
               Cow position:chr14:28004163-28003874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):112, 92

               
               
               Conread position:592-875
               
               
               Cow position:chr14:44258110-44257830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):24, 19

               
               
               Conread position:592-903
               
               
               Cow position:chr14:27305339-27305030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):131, 114

               
               
               Conread position:592-918
               
               
               Cow position:chr14:14417311-14417631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:212
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):34, 53

               
               
               Conread position:592-933
               
               
               Cow position:chr14:16760582-16760250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):107, 31

               
               
               Conread position:592-936
               
               
               Cow position:chr14:35498315-35498646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):29, 15

               
               
               Conread position:592-939
               
               
               Cow position:chr14:30605733-30606072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):189, 110

               
               
               Conread position:592-940
               
               
               Cow position:chr14:24387634-24387295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:238
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):130, 31

               
               
               Conread position:592-941
               
               
               Cow position:chr14:8945895-8946240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):34, 124

               
               
               Conread position:592-941
               
               
               Cow position:chr14:9020213-9019884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:238
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):16, 24

               
               
               Conread position:592-941
               
               
               Cow position:chr14:19851742-19852093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:245
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):29, 20

               
               
               Conread position:592-941
               
               
               Cow position:chr14:36167124-36166783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):94, 31

               
               
               Conread position:592-941
               
               
               Cow position:chr14:44237517-44237884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:243
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):31, 303

               
               
               Conread position:592-945
               
               
               Cow position:chr14:12324611-12324246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:248
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):34, 333

               
               
               Conread position:592-945
               
               
               Cow position:chr14:39434074-39434416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):342, 18

               
               
               Conread position:592-947
               
               
               Cow position:chr14:37103396-37103044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:245
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):28, 53

               
               
               Conread position:592-949
               
               
               Cow position:chr14:6599765-6600117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 221

               
               
               Conread position:592-949
               
               
               Cow position:chr14:48492601-48492964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:244
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):31, 125

               
               
               Conread position:592-951
               
               
               Cow position:chr14:23682449-23682100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):82, 30

               
               
               Conread position:592-951
               
               
               Cow position:chr14:41471782-41472145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 33

               
               
               Conread position:592-955
               
               
               Cow position:chr14:13042942-13042588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:244
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):268, 31

               
               
               Conread position:592-955
               
               
               Cow position:chr14:25986703-25986339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:247
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):132, 111

               
               
               Conread position:592-958
               
               
               Cow position:chr14:19321320-19321685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:252
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):137, 43

               
               
               Conread position:592-959
               
               
               Cow position:chr14:21357737-21357383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:259
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):30, 60

               
               
               Conread position:592-959
               
               
               Cow position:chr14:27338530-27338163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:246
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):34, 120

               
               
               Conread position:592-959
               
               
               Cow position:chr14:45677409-45677054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):133, 31

               
               
               Conread position:592-960
               
               
               Cow position:chr14:11043307-11043669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:259
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):34, 56

               
               
               Conread position:593-778
               
               
               Cow position:chr14:31734661-31734852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:593-820
               
               
               Cow position:chr14:40433105-40432887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):129, 30

               
               
               Conread position:593-865
               
               
               Cow position:chr14:19863245-19863518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):44, 118

               
               
               Conread position:593-874
               
               
               Cow position:chr14:34984048-34983774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):199, 30

               
               
               Conread position:593-937
               
               
               Cow position:chr14:33714498-33714827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:238
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):129, 30

               
               
               Conread position:593-941
               
               
               Cow position:chr14:10858617-10858283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:249
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):159, 77

               
               
               Conread position:593-946
               
               
               Cow position:chr14:19189221-19188893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:236
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):139, 30

               
               
               Conread position:593-959
               
               
               Cow position:chr14:4877046-4877407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:258
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):129, 109

               
               
               Conread position:593-959
               
               
               Cow position:chr14:13846172-13845821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:257
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):76, 19

               
               
               Conread position:593-959
               
               
               Cow position:chr14:50418589-50418241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):29, 53

               
               
               Conread position:594-855
               
               
               Cow position:chr14:27591770-27592030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):14, 32

               
               
               Conread position:594-958
               
               
               Cow position:chr14:11846682-11846322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:250
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):30, 106

               
               
               Conread position:594-959
               
               
               Cow position:chr14:14949026-14949392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 103

               
               
               Conread position:595-833
               
               
               Cow position:chr14:22966936-22966704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):127, 106

               
               
               Conread position:595-860
               
               
               Cow position:chr14:46654362-46654620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:595-949
               
               
               Cow position:chr14:24922286-24921933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 96

               
               
               Conread position:596-753
               
               
               Cow position:chr14:40346979-40347133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):103, 28

               
               
               Conread position:596-847
               
               
               Cow position:chr14:34355511-34355776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):144, 110

               
               
               Conread position:596-860
               
               
               Cow position:chr14:1859432-1859691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):28, 89

               
               
               Conread position:596-860
               
               
               Cow position:chr14:40269662-40269920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):127, 66

               
               
               Conread position:596-875
               
               
               Cow position:chr14:10630943-10631214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):260, 70

               
               
               Conread position:596-901
               
               
               Cow position:chr14:6175765-6175484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:210
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):126, 88

               
               
               Conread position:596-937
               
               
               Cow position:chr14:18309117-18309453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:240
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):106, 28

               
               
               Conread position:596-949
               
               
               Cow position:chr14:13810120-13809789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:239
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):171, 130

               
               
               Conread position:596-950
               
               
               Cow position:chr14:44084297-44084642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):106, 17

               
               
               Conread position:596-951
               
               
               Cow position:chr14:38747848-38747512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:596-959
               
               
               Cow position:chr14:33456858-33457220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 118

               
               
               Conread position:597-940
               
               
               Cow position:chr14:4202912-4203248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:246
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):111, 143

               
               
               Conread position:597-958
               
               
               Cow position:chr14:47584472-47584841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):28, 100

               
               
               Conread position:598-949
               
               
               Cow position:chr14:25682111-25681754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):21, 99

               
               
               Conread position:598-949
               
               
               Cow position:chr14:49411298-49410969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:233
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):28, 46

               
               
               Conread position:598-951
               
               
               Cow position:chr14:49824446-49824779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):35, 26

               
               
               Conread position:598-958
               
               
               Cow position:chr14:18485064-18485429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:250
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):28, 115

               
               
               Conread position:602-752
               
               
               Cow position:chr14:21230780-21230632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):95, 121

               
               
               Conread position:602-956
               
               
               Cow position:chr14:33341934-33341576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:247
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):21, 113

               
               
               Conread position:602-960
               
               
               Cow position:chr14:48773078-48772738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):72, 9

               
               
               Conread position:603-752
               
               
               Cow position:chr14:26456685-26456538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):119, 92

               
               
               Conread position:603-842
               
               
               Cow position:chr14:49021727-49021959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):119, 90

               
               
               Conread position:603-959
               
               
               Cow position:chr14:12511726-12512067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):127, 59

               
               
               Conread position:604-944
               
               
               Cow position:chr14:17554317-17554652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):147, 81

               
               
               Conread position:604-949
               
               
               Cow position:chr14:47276530-47276866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):22, 92

               
               
               Conread position:604-951
               
               
               Cow position:chr14:15932050-15931706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):113, 20

               
               
               Conread position:607-847
               
               
               Cow position:chr14:46998217-46997973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):93, 77

               
               
               Conread position:607-867
               
               
               Cow position:chr14:14317052-14316801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):115, 21

               
               
               Conread position:607-903
               
               
               Cow position:chr14:7420881-7421177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):118, 86

               
               
               Conread position:607-937
               
               
               Cow position:chr14:34199678-34200012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:236
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):70, 16

               
               
               Conread position:607-955
               
               
               Cow position:chr14:23090210-23090553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):151, 17

               
               
               Conread position:607-959
               
               
               Cow position:chr14:40253392-40253045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):214, 116

               
               
               Conread position:611-949
               
               
               Cow position:chr14:49929571-49929910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):15, 97

               
               
               Conread position:612-949
               
               
               Cow position:chr14:5234716-5235044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):87, 57

               
               
               Conread position:613-929
               
               
               Cow position:chr14:3948936-3949249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:202
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):197, 48

               
               
               Conread position:613-930
               
               
               Cow position:chr14:40486488-40486789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:613-949
               
               
               Cow position:chr14:20556798-20556469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):13, 73

               
               
               Conread position:614-950
               
               
               Cow position:chr14:7800079-7799752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):86, 100

               
               
               Conread position:617-941
               
               
               Cow position:chr14:26654971-26655294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 14

               
               
               Conread position:617-950
               
               
               Cow position:chr14:49817539-49817851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:233
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:617-954
               
               
               Cow position:chr14:26222906-26222566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):82, 204

               
               
               Conread position:618-864
               
               
               Cow position:chr14:27275322-27275080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):51, 83

               
               
               Conread position:618-875
               
               
               Cow position:chr14:42437185-42436931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:190
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):112, 10

               
               
               Conread position:618-923
               
               
               Cow position:chr14:37890005-37889720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:618-941
               
               
               Cow position:chr14:22941561-22941897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:231
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:618-950
               
               
               Cow position:chr14:27823593-27823267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:235
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):97, 23

               
               
               Conread position:619-855
               
               
               Cow position:chr14:45718106-45718337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):107, 83

               
               
               Conread position:619-934
               
               
               Cow position:chr14:41302671-41302993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):15, 89

               
               
               Conread position:619-937
               
               
               Cow position:chr14:15504000-15504310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):80, 27

               
               
               Conread position:619-937
               
               
               Cow position:chr14:21535161-21535456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):40, 69

               
               
               Conread position:619-945
               
               
               Cow position:chr14:40754085-40754405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 8

               
               
               Conread position:619-959
               
               
               Cow position:chr14:23443178-23442853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:235
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):161, 79

               
               
               Conread position:619-960
               
               
               Cow position:chr14:23424417-23424087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:237
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):161, 79

               
               
               Conread position:620-870
               
               
               Cow position:chr14:19951728-19951477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):180, 101

               
               
               Conread position:620-950
               
               
               Cow position:chr14:35503523-35503197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 50

               
               
               Conread position:621-935
               
               
               Cow position:chr14:30757000-30756690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:200
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:621-937
               
               
               Cow position:chr14:12954226-12954528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):15, 6

               
               
               Conread position:623-939
               
               
               Cow position:chr14:42419119-42419434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:226
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):225, 13

               
               
               Conread position:624-944
               
               
               Cow position:chr14:47252070-47252393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):134, 90

               
               
               Conread position:626-951
               
               
               Cow position:chr14:20954839-20954515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):89, 46

               
               
               Conread position:627-941
               
               
               Cow position:chr14:6541572-6541884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:214
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):195, 83

               
               
               Conread position:627-947
               
               
               Cow position:chr14:35532884-35533203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):107, 82

               
               
               Conread position:627-951
               
               
               Cow position:chr14:11056588-11056903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):239, 71

               
               
               Conread position:627-952
               
               
               Cow position:chr14:41252837-41253147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):73, 147

               
               
               Conread position:627-957
               
               
               Cow position:chr14:7036203-7036534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 75

               
               
               Conread position:629-949
               
               
               Cow position:chr14:5025432-5025113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):98, 61

               
               
               Conread position:629-959
               
               
               Cow position:chr14:11469998-11470327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 78

               
               
               Conread position:633-960
               
               
               Cow position:chr14:7024516-7024194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):188, 48

               
               
               Conread position:634-941
               
               
               Cow position:chr14:28153601-28153902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:640-959
               
               
               Cow position:chr14:1708518-1708836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:226
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):90, 45

               
               
               Conread position:641-949
               
               
               Cow position:chr14:6865144-6864833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):25, 217

               
               
               Conread position:643-941
               
               
               Cow position:chr14:40474697-40474405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):87, 61

               
               
               Conread position:646-948
               
               
               Cow position:chr14:12081005-12081290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:211
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):123, 50

               
               
               Conread position:650-938
               
               
               Cow position:chr14:7621000-7621286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):7, 48

               
               
               Conread position:650-941
               
               
               Cow position:chr14:12634758-12635034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:196
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:650-951
               
               
               Cow position:chr14:11285704-11285403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:217
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):74, 35

               
               
               Conread position:650-951
               
               
               Cow position:chr14:50499199-50499484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):80, 40

               
               
               Conread position:651-941
               
               
               Cow position:chr14:47170224-47170507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:201
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):25, 59

               
               
               Conread position:651-950
               
               
               Cow position:chr14:19193601-19193296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):79, 58

               
               
               Conread position:651-956
               
               
               Cow position:chr14:33229268-33229574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:208
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):34, 56

               
               
               Conread position:652-949
               
               
               Cow position:chr14:50414921-50414628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):78, 54

               
               
               Conread position:653-929
               
               
               Cow position:chr14:22865740-22866017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):50, 139

               
               
               Conread position:653-941
               
               
               Cow position:chr14:10937818-10937513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:654-916
               
               
               Cow position:chr14:40001853-40002111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):76, 28

               
               
               Conread position:654-944
               
               
               Cow position:chr14:12072825-12073116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):31, 56

               
               
               Conread position:654-951
               
               
               Cow position:chr14:16524597-16524302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):69, 17

               
               
               Conread position:654-957
               
               
               Cow position:chr14:4282383-4282683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):69, 52

               
               
               Conread position:657-937
               
               
               Cow position:chr14:1796312-1796044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):65, 49

               
               
               Conread position:657-941
               
               
               Cow position:chr14:36442895-36443174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):73, 49

               
               
               Conread position:658-937
               
               
               Cow position:chr14:24945370-24945647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):73, 12

               
               
               Conread position:658-948
               
               
               Cow position:chr14:15944547-15944831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):64, 39

               
               
               Conread position:658-949
               
               
               Cow position:chr14:39415279-39414993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:658-957
               
               
               Cow position:chr14:10693138-10693430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:660-949
               
               
               Cow position:chr14:49714098-49713815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):82, 49

               
               
               Conread position:661-945
               
               
               Cow position:chr14:12141776-12142077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):47, 126

               
               
               Conread position:662-945
               
               
               Cow position:chr14:45312909-45312635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:662-959
               
               
               Cow position:chr14:29965134-29964844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:213
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):68, 28

               
               
               Conread position:663-941
               
               
               Cow position:chr14:3498922-3498656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):59, 34

               
               
               Conread position:663-960
               
               
               Cow position:chr14:4047866-4047571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:195
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):67, 44

               
               
               Conread position:666-949
               
               
               Cow position:chr14:39452321-39452045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):64, 31

               
               
               Conread position:666-951
               
               
               Cow position:chr14:8923469-8923752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):7, 57

               
               
               Conread position:667-918
               
               
               Cow position:chr14:15404808-15404560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):50, 7

               
               
               Conread position:670-918
               
               
               Cow position:chr14:17335237-17335486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):25, 160

               
               
               Conread position:670-949
               
               
               Cow position:chr14:44713525-44713251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:197
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:673-935
               
               
               Cow position:chr14:25228244-25227996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:673-941
               
               
               Cow position:chr14:12146373-12146638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:179
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):33, 16

               
               
               Conread position:673-941
               
               
               Cow position:chr14:41486154-41486426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):47, 29

               
               
               Conread position:673-952
               
               
               Cow position:chr14:22236380-22236651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):246, 33

               
               
               Conread position:673-957
               
               
               Cow position:chr14:6655475-6655764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):57, 33

               
               
               Conread position:674-933
               
               
               Cow position:chr14:23962958-23962705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):7, 24

               
               
               Conread position:674-939
               
               
               Cow position:chr14:12884374-12884109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):23, 11

               
               
               Conread position:674-951
               
               
               Cow position:chr14:23103891-23104167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):30, 116

               
               
               Conread position:675-960
               
               
               Cow position:chr14:49488065-49487789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):51, 34

               
               
               Conread position:676-941
               
               
               Cow position:chr14:29809402-29809135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):33, 195

               
               
               Conread position:676-949
               
               
               Cow position:chr14:24527058-24527328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):54, 26

               
               
               Conread position:676-957
               
               
               Cow position:chr14:11643153-11643418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):47, 10

               
               
               Conread position:679-960
               
               
               Cow position:chr14:4469472-4469760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):36, 27

               
               
               Conread position:680-949
               
               
               Cow position:chr14:33546255-33546524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):38, 26

               
               
               Conread position:680-959
               
               
               Cow position:chr14:7198601-7198320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:683-950
               
               
               Cow position:chr14:28465122-28465384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):39, 30

               
               
               Conread position:684-959
               
               
               Cow position:chr14:6360498-6360215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):13, 26

               
               
               Conread position:685-959
               
               
               Cow position:chr14:38719299-38719023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):21, 29

               
               
               Conread position:686-941
               
               
               Cow position:chr14:21224733-21224486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):16, 23

               
               
               Conread position:686-957
               
               
               Cow position:chr14:23419890-23419619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):38, 11

               
               
               Conread position:688-937
               
               
               Cow position:chr14:20481749-20482005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):17, 27

               
               
               Conread position:694-949
               
               
               Cow position:chr14:6899159-6898907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):21, 28

               
               
               Conread position:695-941
               
               
               Cow position:chr14:28694631-28694876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:696-938
               
               
               Cow position:chr14:28924250-28924011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:697-929
               
               
               Cow position:chr14:5553403-5553172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):9, 22

               
               
               Conread position:701-951
               
               
               Cow position:chr14:27998955-27999208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):15, 7

               
               
               Conread position:702-941
               
               
               Cow position:chr14:4848426-4848193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):21, 12

               
               
               Conread position:702-949
               
               
               Cow position:chr14:10387739-10387493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):28, 63

               
               
               Conread position:706-949
               
               
               Cow position:chr14:10706948-10706714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:707-959
               
               
               Cow position:chr14:26172319-26172572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:708-942
               
               
               Cow position:chr14:11729036-11729265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):22, 139

               
               
               Conread position:708-948
               
               
               Cow position:chr14:26825265-26825024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:708-959
               
               
               Cow position:chr14:26919071-26918822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):17, 66

               
               
               Conread position:709-937
               
               
               Cow position:chr14:43868382-43868153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):14, 93

               
               
               Conread position:709-945
               
               
               Cow position:chr14:34775672-34775910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):7, 202

               
               
               Conread position:709-951
               
               
               Cow position:chr14:15428551-15428312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):21, 173

               
               
               Conread position:709-957
               
               
               Cow position:chr14:12033168-12033419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):13, 79

               
               
               Conread position:710-937
               
               
               Cow position:chr14:25903603-25903379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):13, 141

               
               
               Conread position:710-938
               
               
               Cow position:chr14:18937079-18937308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):20, 5

               
               
               Conread position:710-941
               
               
               Cow position:chr14:13731026-13731255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):13, 155

               
               
               Conread position:710-948
               
               
               Cow position:chr14:23078721-23078955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):20, 5

               
               
               Conread position:710-949
               
               
               Cow position:chr14:14812149-14812388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):20, 5

               
               
               Conread position:710-949
               
               
               Cow position:chr14:27885089-27884850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:710-949
               
               
               Cow position:chr14:37446599-37446839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:710-951
               
               
               Cow position:chr14:49941079-49940846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):20, 5

               
               
               Conread position:710-959
               
               
               Cow position:chr14:24745009-24744760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):52, 41

               
               
               Conread position:716-922
               
               
               Cow position:chr14:42423156-42422950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):115, 105

               
               
               Conread position:717-941
               
               
               Cow position:chr14:18302026-18301799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):6, 197

               
               
               Conread position:718-941
               
               
               Cow position:chr14:11577132-11576912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):12, 92

               
               
               Conread position:721-959
               
               
               Cow position:chr14:45955341-45955112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):199, 35

               
               
               Conread position:722-930
               
               
               Cow position:chr14:35065748-35065540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):108, 103

               
               
               Conread position:724-941
               
               
               Cow position:chr14:14224625-14224410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):202, 0

               
               
               Conread position:724-941
               
               
               Cow position:chr14:15469925-15470143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):109, 59

               
               
               Conread position:724-941
               
               
               Cow position:chr14:27330799-27330575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):34, 97

               
               
               Conread position:725-948
               
               
               Cow position:chr14:20984394-20984171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):215, 94

               
               
               Conread position:729-949
               
               
               Cow position:chr14:5958935-5959159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:729-950
               
               
               Cow position:chr14:24732289-24732068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:730-941
               
               
               Cow position:chr14:20245118-20245325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:730-947
               
               
               Cow position:chr14:36559175-36559389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):49, 31

               
               
               Conread position:731-941
               
               
               Cow position:chr14:7127908-7127703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:731-951
               
               
               Cow position:chr14:27364628-27364410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):11, 48

               
               
               Conread position:731-959
               
               
               Cow position:chr14:44615098-44615325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):103, 92

               
               
               Conread position:732-951
               
               
               Cow position:chr14:18559012-18559224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:741-949
               
               
               Cow position:chr14:18412551-18412759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:741-959
               
               
               Cow position:chr14:13515952-13516168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):199, 47

               
               
               Conread position:742-941
               
               
               Cow position:chr14:41191056-41191255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:744-937
               
               
               Cow position:chr14:19703504-19703699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:747-941
               
               
               Cow position:chr14:50519145-50519334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:750-941
               
               
               Cow position:chr14:21530045-21530240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):166, 19

               
               
               Conread position:757-955
               
               
               Cow position:chr14:20736635-20736443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):126, 99

               
               
               Conread position:763-929
               
               
               Cow position:chr14:11280095-11280258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:773-930
               
               
               Cow position:chr14:19772268-19772420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):50, 9

               
               
               Conread position:773-941
               
               
               Cow position:chr14:20010497-20010665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:773-944
               
               
               Cow position:chr14:40107107-40107272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):37, 48

               
               
               Conread position:773-951
               
               
               Cow position:chr14:8083206-8083029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:773-958
               
               
               Cow position:chr14:24785666-24785487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:774-933
               
               
               Cow position:chr14:40347639-40347791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):42, 14

               
               
               Conread position:774-938
               
               
               Cow position:chr14:22230901-22231062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:774-940
               
               
               Cow position:chr14:8707558-8707400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:774-941
               
               
               Cow position:chr14:23465042-23465209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):89, 113

               
               
               Conread position:774-941
               
               
               Cow position:chr14:27653171-27653004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):81, 76

               
               
               Conread position:774-942
               
               
               Cow position:chr14:25912658-25912496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:774-949
               
               
               Cow position:chr14:18270368-18270195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:774-949
               
               
               Cow position:chr14:30023190-30023365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:774-952
               
               
               Cow position:chr14:32784108-32784286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:774-958
               
               
               Cow position:chr14:8949657-8949476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):165, 63

               
               
               Conread position:774-959
               
               
               Cow position:chr14:8590841-8591021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):178, 82

               
               
               Conread position:774-960
               
               
               Cow position:chr14:47224358-47224551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:775-929
               
               
               Cow position:chr14:20513236-20513082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):131, 135

               
               
               Conread position:775-941
               
               
               Cow position:chr14:7358030-7357861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:775-941
               
               
               Cow position:chr14:27847356-27847199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:775-941
               
               
               Cow position:chr14:35651779-35651937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:775-944
               
               
               Cow position:chr14:8027554-8027727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:775-946
               
               
               Cow position:chr14:20914971-20915143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):59, 77

               
               
               Conread position:775-949
               
               
               Cow position:chr14:21592997-21593166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:775-950
               
               
               Cow position:chr14:33618309-33618143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:775-951
               
               
               Cow position:chr14:5668112-5668289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):167, 0

               
               
               Conread position:775-959
               
               
               Cow position:chr14:29282761-29282577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:776-936
               
               
               Cow position:chr14:7316799-7316641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:776-941
               
               
               Cow position:chr14:31342217-31342052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:776-959
               
               
               Cow position:chr14:19988054-19988238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):170, 0

               
               
               Conread position:777-938
               
               
               Cow position:chr14:10920559-10920722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:777-944
               
               
               Cow position:chr14:16287487-16287324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:777-960
               
               
               Cow position:chr14:41756153-41755981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:779-955
               
               
               Cow position:chr14:7581915-7582093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):77, 118

               
               
               Conread position:780-941
               
               
               Cow position:chr14:37504516-37504355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:780-948
               
               
               Cow position:chr14:145510-145675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):121, 64

               
               
               Conread position:780-951
               
               
               Cow position:chr14:37236371-37236206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:780-959
               
               
               Cow position:chr14:47894117-47893938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):177, 163

               
               
               Conread position:781-955
               
               
               Cow position:chr14:46490464-46490639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):79, 111

               
               
               Conread position:782-944
               
               
               Cow position:chr14:3573774-3573611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):59, 69

               
               
               Conread position:782-959
               
               
               Cow position:chr14:10939862-10940038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):161, 0

               
               
               Conread position:783-941
               
               
               Cow position:chr14:24746464-24746299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:783-959
               
               
               Cow position:chr14:41871589-41871770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):151, 33

               
               
               Conread position:783-960
               
               
               Cow position:chr14:36151323-36151149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:784-941
               
               
               Cow position:chr14:39097505-39097347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:784-951
               
               
               Cow position:chr14:2853147-2852981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):154, 62

               
               
               Conread position:785-944
               
               
               Cow position:chr14:16769869-16770028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:787-944
               
               
               Cow position:chr14:15795926-15796083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:787-945
               
               
               Cow position:chr14:12071530-12071688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:789-959
               
               
               Cow position:chr14:5044663-5044500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):151, 61

               
               
               Conread position:790-941
               
               
               Cow position:chr14:12138008-12137860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:793-945
               
               
               Cow position:chr14:10838848-10838701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):147, 56

               
               
               Conread position:508-941
               
               
               Cow position:chr15:18322606-18323057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:285
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):39, 23

               
               
               Conread position:534-911
               
               
               Cow position:chr15:23865771-23866152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:259
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):32, 144

               
               
               Conread position:547-945
               
               
               Cow position:chr15:21365917-21366304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:275
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):72, 7

               
               
               Conread position:547-956
               
               
               Cow position:chr15:20390998-20391402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:268
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):50, 7

               
               
               Conread position:549-941
               
               
               Cow position:chr15:9648431-9648799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:259
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):74, 24

               
               
               Conread position:549-955
               
               
               Cow position:chr15:25666943-25667351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:277
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):6, 113

               
               
               Conread position:554-941
               
               
               Cow position:chr15:36636304-36635919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:253
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):20, 14

               
               
               Conread position:561-941
               
               
               Cow position:chr15:32226609-32226969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):5, 85

               
               
               Conread position:562-799
               
               
               Cow position:chr15:5632942-5632710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):13, 7

               
               
               Conread position:562-941
               
               
               Cow position:chr15:22938507-22938877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 7

               
               
               Conread position:562-941
               
               
               Cow position:chr15:34478952-34478578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:251
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):13, 7

               
               
               Conread position:562-955
               
               
               Cow position:chr15:20534180-20534576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 7

               
               
               Conread position:566-753
               
               
               Cow position:chr15:23486909-23487093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):22, 52

               
               
               Conread position:566-831
               
               
               Cow position:chr15:39436474-39436215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):130, 31

               
               
               Conread position:566-855
               
               
               Cow position:chr15:53353290-53353575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):151, 30

               
               
               Conread position:566-926
               
               
               Cow position:chr15:23696655-23696997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:245
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):164, 23

               
               
               Conread position:566-941
               
               
               Cow position:chr15:29810371-29810015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:262
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):164, 21

               
               
               Conread position:566-941
               
               
               Cow position:chr15:39599702-39599339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:250
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):27, 60

               
               
               Conread position:568-958
               
               
               Cow position:chr15:18975512-18975890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:255
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):59, 23

               
               
               Conread position:569-928
               
               
               Cow position:chr15:33643345-33642993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 54

               
               
               Conread position:569-939
               
               
               Cow position:chr15:21908192-21907836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:248
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):23, 53

               
               
               Conread position:569-950
               
               
               Cow position:chr15:286736-286353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 57

               
               
               Conread position:569-950
               
               
               Cow position:chr15:17870033-17870411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 24

               
               
               Conread position:573-944
               
               
               Cow position:chr15:35838840-35839210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:251
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):181, 18

               
               
               Conread position:574-813
               
               
               Cow position:chr15:5536008-5535774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):45, 170

               
               
               Conread position:574-859
               
               
               Cow position:chr15:47822059-47821784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):277, 49

               
               
               Conread position:574-875
               
               
               Cow position:chr15:16583453-16583737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):22, 52

               
               
               Conread position:574-941
               
               
               Cow position:chr15:48851239-48851603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:254
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):46, 88

               
               
               Conread position:574-941
               
               
               Cow position:chr15:53036717-53037072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:248
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):20, 39

               
               
               Conread position:574-947
               
               
               Cow position:chr15:6462244-6462609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:246
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):19, 138

               
               
               Conread position:574-949
               
               
               Cow position:chr15:24031438-24031078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 69

               
               
               Conread position:574-949
               
               
               Cow position:chr15:28924512-28924880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 23

               
               
               Conread position:575-955
               
               
               Cow position:chr15:22939076-22939449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 21

               
               
               Conread position:576-819
               
               
               Cow position:chr15:24044849-24045091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):16, 48

               
               
               Conread position:576-854
               
               
               Cow position:chr15:46868463-46868740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):154, 47

               
               
               Conread position:576-926
               
               
               Cow position:chr15:39490409-39490756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):43, 11

               
               
               Conread position:576-928
               
               
               Cow position:chr15:6970233-6969890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:244
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):12, 49

               
               
               Conread position:576-935
               
               
               Cow position:chr15:9622435-9622074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:243
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):45, 15

               
               
               Conread position:576-940
               
               
               Cow position:chr15:16261559-16261221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:245
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):121, 12

               
               
               Conread position:576-941
               
               
               Cow position:chr15:4178691-4179049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):134, 5

               
               
               Conread position:576-941
               
               
               Cow position:chr15:40957823-40957468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):154, 13

               
               
               Conread position:576-951
               
               
               Cow position:chr15:2141052-2141441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:270
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):50, 9

               
               
               Conread position:576-952
               
               
               Cow position:chr15:4138379-4138011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 14

               
               
               Conread position:577-697
               
               
               Cow position:chr15:19403230-19403109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:98
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:577-715
               
               
               Cow position:chr15:4535156-4535021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):125, 11

               
               
               Conread position:577-753
               
               
               Cow position:chr15:34144906-34145079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):17, 128

               
               
               Conread position:577-809
               
               
               Cow position:chr15:41619938-41620171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):15, 129

               
               
               Conread position:577-870
               
               
               Cow position:chr15:50302432-50302142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):15, 47

               
               
               Conread position:577-875
               
               
               Cow position:chr15:39316586-39316889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:210
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):15, 97

               
               
               Conread position:577-896
               
               
               Cow position:chr15:39621592-39621266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 20

               
               
               Conread position:577-924
               
               
               Cow position:chr15:2952880-2953226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:241
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):15, 80

               
               
               Conread position:577-940
               
               
               Cow position:chr15:50341369-50341009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):11, 48

               
               
               Conread position:577-945
               
               
               Cow position:chr15:10245758-10246109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 35

               
               
               Conread position:577-947
               
               
               Cow position:chr15:21832175-21832560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:263
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):20, 320

               
               
               Conread position:577-955
               
               
               Cow position:chr15:30982170-30981828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:262
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):153, 11

               
               
               Conread position:577-959
               
               
               Cow position:chr15:21421192-21420819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 130

               
               
               Conread position:577-959
               
               
               Cow position:chr15:23572430-23572818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 61

               
               
               Conread position:578-952
               
               
               Cow position:chr15:17100462-17100827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 127

               
               
               Conread position:579-936
               
               
               Cow position:chr15:21894025-21893675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 12

               
               
               Conread position:579-958
               
               
               Cow position:chr15:39405974-39405616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 8

               
               
               Conread position:580-766
               
               
               Cow position:chr15:19119358-19119549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:580-941
               
               
               Cow position:chr15:18018166-18017817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):133, 18

               
               
               Conread position:581-736
               
               
               Cow position:chr15:51632795-51632945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):13, 17

               
               
               Conread position:581-751
               
               
               Cow position:chr15:15707866-15708037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:581-941
               
               
               Cow position:chr15:25208524-25208869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:251
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):5, 43

               
               
               Conread position:581-941
               
               
               Cow position:chr15:26919033-26919379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:247
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):5, 44

               
               
               Conread position:581-941
               
               
               Cow position:chr15:38883397-38883036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 195

               
               
               Conread position:581-941
               
               
               Cow position:chr15:52317301-52316950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):142, 37

               
               
               Conread position:581-951
               
               
               Cow position:chr15:6905782-6905418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:255
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):11, 144

               
               
               Conread position:581-951
               
               
               Cow position:chr15:17084453-17084086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 66

               
               
               Conread position:581-951
               
               
               Cow position:chr15:42143099-42142753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:581-958
               
               
               Cow position:chr15:15041190-15041555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:255
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):151, 103

               
               
               Conread position:581-959
               
               
               Cow position:chr15:275888-275517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:264
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:584-924
               
               
               Cow position:chr15:17417724-17418059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):249, 12

               
               
               Conread position:584-960
               
               
               Cow position:chr15:36391908-36391543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 40

               
               
               Conread position:585-736
               
               
               Cow position:chr15:11362938-11363084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:585-758
               
               
               Cow position:chr15:6331804-6331969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):37, 11

               
               
               Conread position:585-807
               
               
               Cow position:chr15:9526233-9526457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):42, 113

               
               
               Conread position:585-848
               
               
               Cow position:chr15:37205285-37205028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):7, 40

               
               
               Conread position:585-860
               
               
               Cow position:chr15:44641136-44640864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):38, 45

               
               
               Conread position:585-895
               
               
               Cow position:chr15:363263-362959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:213
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):119, 39

               
               
               Conread position:585-926
               
               
               Cow position:chr15:21582679-21583022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):40, 90

               
               
               Conread position:585-945
               
               
               Cow position:chr15:31857828-31857475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:585-945
               
               
               Cow position:chr15:38837986-38837630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):262, 99

               
               
               Conread position:585-951
               
               
               Cow position:chr15:5234764-5235111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:585-952
               
               
               Cow position:chr15:39598482-39598123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 38

               
               
               Conread position:585-955
               
               
               Cow position:chr15:1804092-1804458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 136

               
               
               Conread position:585-958
               
               
               Cow position:chr15:11658329-11658709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:255
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):109, 38

               
               
               Conread position:586-879
               
               
               Cow position:chr15:20422540-20422828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 118

               
               
               Conread position:588-876
               
               
               Cow position:chr15:13554591-13554304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):261, 118

               
               
               Conread position:588-949
               
               
               Cow position:chr15:11987171-11987527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):12, 112

               
               
               Conread position:590-959
               
               
               Cow position:chr15:9879161-9879509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):156, 33

               
               
               Conread position:591-706
               
               
               Cow position:chr15:43750748-43750631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:93
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:591-714
               
               
               Cow position:chr15:41583144-41583022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:97
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:591-715
               
               
               Cow position:chr15:7827803-7827929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:591-720
               
               
               Cow position:chr15:45217053-45216927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:591-736
               
               
               Cow position:chr15:16936607-16936756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):35, 62

               
               
               Conread position:591-736
               
               
               Cow position:chr15:21523021-21522878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):131, 113

               
               
               Conread position:591-742
               
               
               Cow position:chr15:36782094-36782239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):131, 33

               
               
               Conread position:591-751
               
               
               Cow position:chr15:13684033-13684191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):131, 26

               
               
               Conread position:591-752
               
               
               Cow position:chr15:9871180-9871341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-752
               
               
               Cow position:chr15:40009416-40009578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):9, 33

               
               
               Conread position:591-753
               
               
               Cow position:chr15:10845956-10845794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):35, 117

               
               
               Conread position:591-758
               
               
               Cow position:chr15:52739887-52740056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):28, 96

               
               
               Conread position:591-761
               
               
               Cow position:chr15:16657727-16657558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):38, 79

               
               
               Conread position:591-762
               
               
               Cow position:chr15:23703008-23702845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-792
               
               
               Cow position:chr15:38877073-38877268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):129, 28

               
               
               Conread position:591-808
               
               
               Cow position:chr15:10737512-10737724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):35, 81

               
               
               Conread position:591-812
               
               
               Cow position:chr15:37931529-37931743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:591-820
               
               
               Cow position:chr15:12655678-12655908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):13, 35

               
               
               Conread position:591-836
               
               
               Cow position:chr15:23768029-23768265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):32, 80

               
               
               Conread position:591-841
               
               
               Cow position:chr15:16307646-16307409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-842
               
               
               Cow position:chr15:4093699-4093947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):133, 32

               
               
               Conread position:591-842
               
               
               Cow position:chr15:20352063-20351818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:591-842
               
               
               Cow position:chr15:47843024-47843265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):111, 31

               
               
               Conread position:591-847
               
               
               Cow position:chr15:53045645-53045896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):163, 33

               
               
               Conread position:591-857
               
               
               Cow position:chr15:21388934-21389194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):131, 113

               
               
               Conread position:591-857
               
               
               Cow position:chr15:22136916-22136661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):59, 51

               
               
               Conread position:591-866
               
               
               Cow position:chr15:40999835-41000107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):97, 33

               
               
               Conread position:591-875
               
               
               Cow position:chr15:10335990-10335709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-875
               
               
               Cow position:chr15:22871840-22871567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:591-875
               
               
               Cow position:chr15:33976455-33976742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):108, 33

               
               
               Conread position:591-887
               
               
               Cow position:chr15:51898464-51898169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):111, 118

               
               
               Conread position:591-896
               
               
               Cow position:chr15:10512037-10512334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:220
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):95, 33

               
               
               Conread position:591-903
               
               
               Cow position:chr15:25386676-25386366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:212
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):28, 99

               
               
               Conread position:591-918
               
               
               Cow position:chr15:23180671-23180358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):37, 81

               
               
               Conread position:591-918
               
               
               Cow position:chr15:31283598-31283295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):43, 34

               
               
               Conread position:591-922
               
               
               Cow position:chr15:23115077-23114741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):8, 321

               
               
               Conread position:591-925
               
               
               Cow position:chr15:10608072-10608403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:237
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):258, 26

               
               
               Conread position:591-927
               
               
               Cow position:chr15:8354277-8353945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 33

               
               
               Conread position:591-928
               
               
               Cow position:chr15:34206955-34207299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):64, 33

               
               
               Conread position:591-928
               
               
               Cow position:chr15:35112644-35112970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):35, 122

               
               
               Conread position:591-929
               
               
               Cow position:chr15:915612-915949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):265, 58

               
               
               Conread position:591-929
               
               
               Cow position:chr15:20370223-20370550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 33

               
               
               Conread position:591-930
               
               
               Cow position:chr15:24797574-24797902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):34, 14

               
               
               Conread position:591-933
               
               
               Cow position:chr15:39619388-39619040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):39, 49

               
               
               Conread position:591-935
               
               
               Cow position:chr15:85015-85350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):35, 110

               
               
               Conread position:591-935
               
               
               Cow position:chr15:245010-244678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:241
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):124, 32

               
               
               Conread position:591-935
               
               
               Cow position:chr15:5420652-5420987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):122, 20

               
               
               Conread position:591-935
               
               
               Cow position:chr15:25907142-25906813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:242
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):109, 32

               
               
               Conread position:591-937
               
               
               Cow position:chr15:17196375-17196039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:237
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):141, 79

               
               
               Conread position:591-937
               
               
               Cow position:chr15:20459066-20459417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 119

               
               
               Conread position:591-937
               
               
               Cow position:chr15:36888057-36887733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:245
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-937
               
               
               Cow position:chr15:37381861-37381523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):28, 122

               
               
               Conread position:591-937
               
               
               Cow position:chr15:45584955-45584616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):27, 53

               
               
               Conread position:591-938
               
               
               Cow position:chr15:23798290-23798629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:246
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):30, 86

               
               
               Conread position:591-938
               
               
               Cow position:chr15:45245313-45245648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):83, 33

               
               
               Conread position:591-941
               
               
               Cow position:chr15:794783-795127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:244
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):114, 34

               
               
               Conread position:591-941
               
               
               Cow position:chr15:11995792-11996138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 112

               
               
               Conread position:591-941
               
               
               Cow position:chr15:12723321-12722974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:245
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):141, 114

               
               
               Conread position:591-941
               
               
               Cow position:chr15:14870976-14870645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr15:20289838-20290168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):24, 108

               
               
               Conread position:591-941
               
               
               Cow position:chr15:20486979-20487311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):133, 57

               
               
               Conread position:591-941
               
               
               Cow position:chr15:33303565-33303198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):35, 345

               
               
               Conread position:591-941
               
               
               Cow position:chr15:36259369-36259707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:241
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):133, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr15:44377509-44377161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):89, 79

               
               
               Conread position:591-941
               
               
               Cow position:chr15:49922374-49922025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:241
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):35, 130

               
               
               Conread position:591-944
               
               
               Cow position:chr15:30047309-30047667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 32

               
               
               Conread position:591-945
               
               
               Cow position:chr15:32323971-32324321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 35

               
               
               Conread position:591-947
               
               
               Cow position:chr15:45479240-45478883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 77

               
               
               Conread position:591-949
               
               
               Cow position:chr15:4295998-4295642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 35

               
               
               Conread position:591-949
               
               
               Cow position:chr15:5571402-5571747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:236
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):35, 117

               
               
               Conread position:591-949
               
               
               Cow position:chr15:5984358-5984705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:230
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):37, 69

               
               
               Conread position:591-949
               
               
               Cow position:chr15:8007215-8006860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:242
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):31, 130

               
               
               Conread position:591-949
               
               
               Cow position:chr15:11560278-11560633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:249
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):35, 106

               
               
               Conread position:591-949
               
               
               Cow position:chr15:38806265-38806627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:244
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):34, 124

               
               
               Conread position:591-950
               
               
               Cow position:chr15:1083142-1083489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:245
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):135, 32

               
               
               Conread position:591-950
               
               
               Cow position:chr15:23275768-23275410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:255
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):172, 32

               
               
               Conread position:591-950
               
               
               Cow position:chr15:39373199-39373574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:250
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):126, 109

               
               
               Conread position:591-951
               
               
               Cow position:chr15:5726558-5726195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:252
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):257, 123

               
               
               Conread position:591-951
               
               
               Cow position:chr15:44658591-44658246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 106

               
               
               Conread position:591-952
               
               
               Cow position:chr15:16823171-16822828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-952
               
               
               Cow position:chr15:47843877-47844209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:250
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:591-954
               
               
               Cow position:chr15:1722617-1722964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-954
               
               
               Cow position:chr15:34140211-34139867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):131, 55

               
               
               Conread position:591-955
               
               
               Cow position:chr15:11011371-11011718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:249
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):126, 32

               
               
               Conread position:591-955
               
               
               Cow position:chr15:14505659-14505322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-955
               
               
               Cow position:chr15:21821691-21822051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 68

               
               
               Conread position:591-955
               
               
               Cow position:chr15:26896481-26896821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:255
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):281, 32

               
               
               Conread position:591-956
               
               
               Cow position:chr15:17763140-17762782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:243
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):96, 6

               
               
               Conread position:591-956
               
               
               Cow position:chr15:24968027-24967676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:262
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):32, 16

               
               
               Conread position:591-956
               
               
               Cow position:chr15:43673704-43674074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:264
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):24, 5

               
               
               Conread position:591-958
               
               
               Cow position:chr15:608380-608015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 107

               
               
               Conread position:591-958
               
               
               Cow position:chr15:27972981-27973334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:242
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):27, 119

               
               
               Conread position:591-959
               
               
               Cow position:chr15:45183-45554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 79

               
               
               Conread position:591-959
               
               
               Cow position:chr15:21941613-21941974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 54

               
               
               Conread position:591-959
               
               
               Cow position:chr15:22531890-22531546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:258
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:591-959
               
               
               Cow position:chr15:35642254-35641885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 124

               
               
               Conread position:591-960
               
               
               Cow position:chr15:3700052-3700415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):114, 32

               
               
               Conread position:591-960
               
               
               Cow position:chr15:43827540-43827904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 33

               
               
               Conread position:592-761
               
               
               Cow position:chr15:11646255-11646425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):103, 32

               
               
               Conread position:592-791
               
               
               Cow position:chr15:16904860-16904667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):34, 107

               
               
               Conread position:592-805
               
               
               Cow position:chr15:17859005-17859203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:592-812
               
               
               Cow position:chr15:13387312-13387093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):111, 32

               
               
               Conread position:592-855
               
               
               Cow position:chr15:15881164-15880899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:186
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):29, 107

               
               
               Conread position:592-875
               
               
               Cow position:chr15:23598079-23598363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):169, 130

               
               
               Conread position:592-878
               
               
               Cow position:chr15:2144898-2145189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):103, 34

               
               
               Conread position:592-916
               
               
               Cow position:chr15:25584860-25585177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:220
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):121, 35

               
               
               Conread position:592-929
               
               
               Cow position:chr15:7307920-7308256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:229
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):34, 60

               
               
               Conread position:592-929
               
               
               Cow position:chr15:33306342-33306022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):130, 31

               
               
               Conread position:592-929
               
               
               Cow position:chr15:53101822-53101486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):31, 92

               
               
               Conread position:592-937
               
               
               Cow position:chr15:16667270-16667604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 32

               
               
               Conread position:592-939
               
               
               Cow position:chr15:16604055-16603721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):130, 61

               
               
               Conread position:592-941
               
               
               Cow position:chr15:4861681-4862017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):31, 104

               
               
               Conread position:592-941
               
               
               Cow position:chr15:12304874-12304529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 31

               
               
               Conread position:592-941
               
               
               Cow position:chr15:22532470-22532143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:244
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:592-941
               
               
               Cow position:chr15:22930107-22930460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 253

               
               
               Conread position:592-941
               
               
               Cow position:chr15:51427590-51427936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):31, 14

               
               
               Conread position:592-945
               
               
               Cow position:chr15:21608491-21608837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):138, 87

               
               
               Conread position:592-949
               
               
               Cow position:chr15:16439596-16439952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):27, 83

               
               
               Conread position:592-949
               
               
               Cow position:chr15:27900276-27900623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 70

               
               
               Conread position:592-949
               
               
               Cow position:chr15:32979805-32980152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):31, 103

               
               
               Conread position:592-949
               
               
               Cow position:chr15:43913855-43914216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 107

               
               
               Conread position:592-950
               
               
               Cow position:chr15:7430210-7429847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:253
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):130, 110

               
               
               Conread position:592-951
               
               
               Cow position:chr15:16018267-16017913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:239
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):34, 53

               
               
               Conread position:592-959
               
               
               Cow position:chr15:38036706-38037074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):34, 127

               
               
               Conread position:592-959
               
               
               Cow position:chr15:47990533-47990894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:244
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):105, 11

               
               
               Conread position:592-960
               
               
               Cow position:chr15:10456780-10457157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:253
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):242, 31

               
               
               Conread position:593-736
               
               
               Cow position:chr15:20725384-20725525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):25, 117

               
               
               Conread position:593-820
               
               
               Cow position:chr15:47279908-47280131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):129, 113

               
               
               Conread position:593-842
               
               
               Cow position:chr15:26404506-26404269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):130, 24

               
               
               Conread position:593-848
               
               
               Cow position:chr15:50089214-50088960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):32, 57

               
               
               Conread position:593-861
               
               
               Cow position:chr15:12870632-12870897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:593-929
               
               
               Cow position:chr15:11559123-11559450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:234
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):129, 101

               
               
               Conread position:593-930
               
               
               Cow position:chr15:34896994-34896662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):80, 32

               
               
               Conread position:593-935
               
               
               Cow position:chr15:1329871-1330213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 30

               
               
               Conread position:593-936
               
               
               Cow position:chr15:41045634-41045297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):28, 59

               
               
               Conread position:593-936
               
               
               Cow position:chr15:52778295-52778629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):31, 81

               
               
               Conread position:593-937
               
               
               Cow position:chr15:24994289-24994617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:241
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):130, 30

               
               
               Conread position:593-937
               
               
               Cow position:chr15:30001917-30001590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):246, 101

               
               
               Conread position:593-941
               
               
               Cow position:chr15:26911847-26912178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:244
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):129, 30

               
               
               Conread position:593-941
               
               
               Cow position:chr15:36621649-36621291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:258
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):28, 118

               
               
               Conread position:593-941
               
               
               Cow position:chr15:43626700-43626354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 113

               
               
               Conread position:593-941
               
               
               Cow position:chr15:49738813-49739125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:236
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:593-945
               
               
               Cow position:chr15:10088551-10088205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:244
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):47, 103

               
               
               Conread position:593-948
               
               
               Cow position:chr15:4676773-4677115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):24, 112

               
               
               Conread position:593-949
               
               
               Cow position:chr15:5498797-5499146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):35, 124

               
               
               Conread position:593-949
               
               
               Cow position:chr15:20472317-20472662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):33, 52

               
               
               Conread position:593-949
               
               
               Cow position:chr15:43030793-43031144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:243
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):33, 105

               
               
               Conread position:593-950
               
               
               Cow position:chr15:36435438-36435083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 77

               
               
               Conread position:593-951
               
               
               Cow position:chr15:19771365-19771016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 113

               
               
               Conread position:593-951
               
               
               Cow position:chr15:50957565-50957930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:249
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):26, 107

               
               
               Conread position:593-958
               
               
               Cow position:chr15:225576-225930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 14

               
               
               Conread position:594-798
               
               
               Cow position:chr15:45323017-45322811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):120, 76

               
               
               Conread position:594-878
               
               
               Cow position:chr15:9107267-9106986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:202
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):128, 112

               
               
               Conread position:594-878
               
               
               Cow position:chr15:36773467-36773743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):80, 115

               
               
               Conread position:594-933
               
               
               Cow position:chr15:18671222-18671551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 29

               
               
               Conread position:594-944
               
               
               Cow position:chr15:662241-662577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):42, 11

               
               
               Conread position:594-948
               
               
               Cow position:chr15:5444212-5443864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):32, 53

               
               
               Conread position:594-949
               
               
               Cow position:chr15:33285112-33284758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:241
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):33, 96

               
               
               Conread position:594-949
               
               
               Cow position:chr15:52611540-52611169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:250
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):175, 29

               
               
               Conread position:594-950
               
               
               Cow position:chr15:19186388-19186742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:252
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):58, 77

               
               
               Conread position:595-820
               
               
               Cow position:chr15:13515598-13515374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):127, 28

               
               
               Conread position:595-879
               
               
               Cow position:chr15:24941146-24941413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):127, 100

               
               
               Conread position:595-935
               
               
               Cow position:chr15:22553313-22553645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:232
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):132, 28

               
               
               Conread position:595-941
               
               
               Cow position:chr15:14576564-14576220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:238
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):102, 29

               
               
               Conread position:595-951
               
               
               Cow position:chr15:17233423-17233065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:252
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):26, 103

               
               
               Conread position:596-753
               
               
               Cow position:chr15:23927238-23927399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):31, 77

               
               
               Conread position:596-873
               
               
               Cow position:chr15:42788922-42789193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):131, 27

               
               
               Conread position:596-876
               
               
               Cow position:chr15:29331232-29330958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):88, 27

               
               
               Conread position:596-928
               
               
               Cow position:chr15:26903425-26903096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:232
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):105, 29

               
               
               Conread position:596-929
               
               
               Cow position:chr15:17337587-17337274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:596-941
               
               
               Cow position:chr15:16112630-16112284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 89

               
               
               Conread position:596-943
               
               
               Cow position:chr15:53716661-53716323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):127, 27

               
               
               Conread position:596-944
               
               
               Cow position:chr15:1857956-1857613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 28

               
               
               Conread position:596-951
               
               
               Cow position:chr15:4418172-4418522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 123

               
               
               Conread position:596-951
               
               
               Cow position:chr15:36353897-36353546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 27

               
               
               Conread position:596-959
               
               
               Cow position:chr15:2968565-2968207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 48

               
               
               Conread position:597-812
               
               
               Cow position:chr15:9970748-9970962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):115, 27

               
               
               Conread position:597-875
               
               
               Cow position:chr15:35945753-35945486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):118, 27

               
               
               Conread position:597-941
               
               
               Cow position:chr15:20279169-20279508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):125, 96

               
               
               Conread position:597-941
               
               
               Cow position:chr15:20285768-20286107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):125, 96

               
               
               Conread position:597-941
               
               
               Cow position:chr15:50322823-50322501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:248
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):125, 27

               
               
               Conread position:598-944
               
               
               Cow position:chr15:31928669-31929011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:241
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):11, 86

               
               
               Conread position:598-948
               
               
               Cow position:chr15:49274178-49273845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:599-959
               
               
               Cow position:chr15:24616799-24616440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 108

               
               
               Conread position:601-951
               
               
               Cow position:chr15:40798205-40798538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:239
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):121, 23

               
               
               Conread position:602-960
               
               
               Cow position:chr15:24804566-24804930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:248
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):24, 60

               
               
               Conread position:604-850
               
               
               Cow position:chr15:17260939-17261186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):137, 118

               
               
               Conread position:604-944
               
               
               Cow position:chr15:10231521-10231856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):78, 247

               
               
               Conread position:604-950
               
               
               Cow position:chr15:29026660-29027003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):23, 35

               
               
               Conread position:606-877
               
               
               Cow position:chr15:9781685-9781421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):18, 65

               
               
               Conread position:607-875
               
               
               Cow position:chr15:26573596-26573333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:196
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):115, 88

               
               
               Conread position:607-941
               
               
               Cow position:chr15:30470752-30471089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 16

               
               
               Conread position:607-959
               
               
               Cow position:chr15:6226972-6227304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:246
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:608-949
               
               
               Cow position:chr15:19807496-19807841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:234
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):15, 86

               
               
               Conread position:609-960
               
               
               Cow position:chr15:33178209-33178553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):100, 15

               
               
               Conread position:610-842
               
               
               Cow position:chr15:39326297-39326531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):16, 102

               
               
               Conread position:611-855
               
               
               Cow position:chr15:35204934-35205179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):127, 95

               
               
               Conread position:614-941
               
               
               Cow position:chr15:5717921-5717609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):91, 32

               
               
               Conread position:618-791
               
               
               Cow position:chr15:16448893-16448720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):103, 88

               
               
               Conread position:618-841
               
               
               Cow position:chr15:28258248-28258470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):116, 77

               
               
               Conread position:618-856
               
               
               Cow position:chr15:41418624-41418857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):106, 91

               
               
               Conread position:618-941
               
               
               Cow position:chr15:5158582-5158261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:222
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):112, 76

               
               
               Conread position:618-951
               
               
               Cow position:chr15:20314691-20314361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):101, 40

               
               
               Conread position:618-956
               
               
               Cow position:chr15:12785631-12785302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):52, 57

               
               
               Conread position:618-959
               
               
               Cow position:chr15:5408696-5409023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:234
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):39, 90

               
               
               Conread position:618-960
               
               
               Cow position:chr15:30985581-30985902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):240, 7

               
               
               Conread position:619-950
               
               
               Cow position:chr15:34284205-34284526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):193, 55

               
               
               Conread position:619-958
               
               
               Cow position:chr15:16927891-16928218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:232
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):320, 39

               
               
               Conread position:621-819
               
               
               Cow position:chr15:12359240-12359043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):131, 83

               
               
               Conread position:621-948
               
               
               Cow position:chr15:6232811-6233132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):89, 74

               
               
               Conread position:623-941
               
               
               Cow position:chr15:8665389-8665717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:227
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:623-941
               
               
               Cow position:chr15:37865568-37865250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):99, 20

               
               
               Conread position:624-930
               
               
               Cow position:chr15:40379413-40379113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:624-947
               
               
               Cow position:chr15:33693161-33693488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):134, 97

               
               
               Conread position:626-941
               
               
               Cow position:chr15:23779872-23780181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):96, 76

               
               
               Conread position:626-941
               
               
               Cow position:chr15:49784091-49784391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:208
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:626-948
               
               
               Cow position:chr15:14740484-14740804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):100, 78

               
               
               Conread position:626-957
               
               
               Cow position:chr15:36643657-36643973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):312, 17

               
               
               Conread position:627-958
               
               
               Cow position:chr15:19950672-19950356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):312, 43

               
               
               Conread position:628-932
               
               
               Cow position:chr15:14888443-14888738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):83, 219

               
               
               Conread position:628-949
               
               
               Cow position:chr15:38935605-38935287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):104, 68

               
               
               Conread position:629-951
               
               
               Cow position:chr15:4918870-4919190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:225
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):88, 77

               
               
               Conread position:630-949
               
               
               Cow position:chr15:36793297-36793610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:232
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):74, 36

               
               
               Conread position:631-848
               
               
               Cow position:chr15:10660357-10660575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):91, 83

               
               
               Conread position:631-935
               
               
               Cow position:chr15:11425167-11424868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):300, 71

               
               
               Conread position:631-949
               
               
               Cow position:chr15:14474532-14474222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:631-951
               
               
               Cow position:chr15:9979299-9978983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:219
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):56, 35

               
               
               Conread position:633-875
               
               
               Cow position:chr15:12843-12601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):89, 17

               
               
               Conread position:633-929
               
               
               Cow position:chr15:9465870-9465576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:204
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:634-866
               
               
               Cow position:chr15:35440884-35441116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):70, 145

               
               
               Conread position:634-949
               
               
               Cow position:chr15:39832782-39833096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):13, 65

               
               
               Conread position:635-941
               
               
               Cow position:chr15:28047564-28047871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):97, 62

               
               
               Conread position:639-941
               
               
               Cow position:chr15:52126506-52126800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):68, 7

               
               
               Conread position:642-949
               
               
               Cow position:chr15:5719624-5719923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):84, 64

               
               
               Conread position:649-941
               
               
               Cow position:chr15:41527801-41528076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:212
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):50, 9

               
               
               Conread position:650-937
               
               
               Cow position:chr15:25350141-25349868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):80, 20

               
               
               Conread position:650-937
               
               
               Cow position:chr15:39286237-39286517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:651-922
               
               
               Cow position:chr15:43851410-43851678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):65, 55

               
               
               Conread position:651-929
               
               
               Cow position:chr15:23901190-23901475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):17, 40

               
               
               Conread position:652-941
               
               
               Cow position:chr15:29542054-29541755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):46, 31

               
               
               Conread position:653-942
               
               
               Cow position:chr15:10442331-10442623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):70, 90

               
               
               Conread position:654-929
               
               
               Cow position:chr15:21803489-21803763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):168, 61

               
               
               Conread position:654-941
               
               
               Cow position:chr15:40231288-40231008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:654-949
               
               
               Cow position:chr15:15986711-15987011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):52, 43

               
               
               Conread position:654-951
               
               
               Cow position:chr15:13432665-13432362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:211
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):40, 16

               
               
               Conread position:655-951
               
               
               Cow position:chr15:18073891-18073598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):75, 41

               
               
               Conread position:656-941
               
               
               Cow position:chr15:41624717-41625008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):18, 51

               
               
               Conread position:657-951
               
               
               Cow position:chr15:24452906-24453202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:201
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):73, 34

               
               
               Conread position:658-941
               
               
               Cow position:chr15:14988157-14987885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):72, 12

               
               
               Conread position:660-939
               
               
               Cow position:chr15:40014834-40015113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):62, 55

               
               
               Conread position:660-959
               
               
               Cow position:chr15:53028540-53028233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):44, 217

               
               
               Conread position:661-930
               
               
               Cow position:chr15:13782803-13783067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):36, 46

               
               
               Conread position:662-941
               
               
               Cow position:chr15:4076488-4076221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):61, 44

               
               
               Conread position:662-941
               
               
               Cow position:chr15:41053603-41053881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):68, 53

               
               
               Conread position:662-944
               
               
               Cow position:chr15:42888674-42888948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):97, 52

               
               
               Conread position:662-952
               
               
               Cow position:chr15:36846011-36846308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):61, 51

               
               
               Conread position:664-948
               
               
               Cow position:chr15:31028495-31028777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):66, 18

               
               
               Conread position:664-949
               
               
               Cow position:chr15:39299159-39299435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):170, 42

               
               
               Conread position:665-951
               
               
               Cow position:chr15:19553763-19554046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:210
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):65, 13

               
               
               Conread position:670-929
               
               
               Cow position:chr15:40947217-40947475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):60, 12

               
               
               Conread position:672-944
               
               
               Cow position:chr15:19942753-19942484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):32, 115

               
               
               Conread position:673-860
               
               
               Cow position:chr15:9497347-9497532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):54, 36

               
               
               Conread position:673-937
               
               
               Cow position:chr15:38859976-38860238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):49, 23

               
               
               Conread position:673-947
               
               
               Cow position:chr15:15177467-15177201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):51, 23

               
               
               Conread position:673-950
               
               
               Cow position:chr15:36952047-36952318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):23, 112

               
               
               Conread position:673-951
               
               
               Cow position:chr15:13395703-13395421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):30, 13

               
               
               Conread position:673-959
               
               
               Cow position:chr15:43114569-43114852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):39, 97

               
               
               Conread position:676-937
               
               
               Cow position:chr15:3695784-3695531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):47, 34

               
               
               Conread position:677-951
               
               
               Cow position:chr15:11613941-11614214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):42, 19

               
               
               Conread position:682-949
               
               
               Cow position:chr15:31416021-31416289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):22, 35

               
               
               Conread position:687-949
               
               
               Cow position:chr15:36388431-36388181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):43, 19

               
               
               Conread position:696-941
               
               
               Cow position:chr15:41056072-41056319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):27, 10

               
               
               Conread position:696-949
               
               
               Cow position:chr15:8679626-8679877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):46, 17

               
               
               Conread position:697-937
               
               
               Cow position:chr15:31637432-31637189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):33, 17

               
               
               Conread position:699-941
               
               
               Cow position:chr15:40835243-40835005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):24, 154

               
               
               Conread position:700-949
               
               
               Cow position:chr15:15154433-15154181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):15, 122

               
               
               Conread position:701-960
               
               
               Cow position:chr15:38862222-38861971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):15, 64

               
               
               Conread position:702-941
               
               
               Cow position:chr15:21903283-21903517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):21, 148

               
               
               Conread position:703-959
               
               
               Cow position:chr15:26851102-26851352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):54, 13

               
               
               Conread position:709-949
               
               
               Cow position:chr15:20856356-20856597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:710-929
               
               
               Cow position:chr15:10049198-10049412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):166, 5

               
               
               Conread position:710-930
               
               
               Cow position:chr15:13701651-13701871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):12, 5

               
               
               Conread position:710-944
               
               
               Cow position:chr15:38652482-38652716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):20, 110

               
               
               Conread position:710-951
               
               
               Cow position:chr15:49132176-49131938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):12, 5

               
               
               Conread position:710-958
               
               
               Cow position:chr15:37970931-37970674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:710-960
               
               
               Cow position:chr15:31495105-31495347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):152, 0

               
               
               Conread position:711-959
               
               
               Cow position:chr15:7750793-7751045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):13, 171

               
               
               Conread position:714-928
               
               
               Cow position:chr15:27063406-27063614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):28, 133

               
               
               Conread position:714-959
               
               
               Cow position:chr15:1284387-1284132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):16, 174

               
               
               Conread position:714-959
               
               
               Cow position:chr15:42381043-42380799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):10, 192

               
               
               Conread position:715-959
               
               
               Cow position:chr15:8464016-8464260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):7, 229

               
               
               Conread position:715-959
               
               
               Cow position:chr15:18718344-18718591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:717-954
               
               
               Cow position:chr15:46888638-46888398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):13, 45

               
               
               Conread position:717-959
               
               
               Cow position:chr15:26442327-26442081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):6, 138

               
               
               Conread position:719-937
               
               
               Cow position:chr15:50333090-50332869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):5, 65

               
               
               Conread position:719-960
               
               
               Cow position:chr15:48095469-48095227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):91, 21

               
               
               Conread position:721-875
               
               
               Cow position:chr15:25650306-25650455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:721-938
               
               
               Cow position:chr15:7478889-7479105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):86, 79

               
               
               Conread position:721-941
               
               
               Cow position:chr15:19002169-19002393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:724-925
               
               
               Cow position:chr15:7955968-7956173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):66, 155

               
               
               Conread position:724-958
               
               
               Cow position:chr15:49491748-49491523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):216, 97

               
               
               Conread position:726-957
               
               
               Cow position:chr15:4248250-4248023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:726-960
               
               
               Cow position:chr15:22443886-22444116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:729-945
               
               
               Cow position:chr15:44401860-44402064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):120, 27

               
               
               Conread position:731-941
               
               
               Cow position:chr15:18762942-18763150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):129, 64

               
               
               Conread position:731-947
               
               
               Cow position:chr15:38420456-38420671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):117, 42

               
               
               Conread position:731-951
               
               
               Cow position:chr15:39473838-39474056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):208, 49

               
               
               Conread position:732-955
               
               
               Cow position:chr15:8642213-8641984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):138, 43

               
               
               Conread position:734-950
               
               
               Cow position:chr15:3591484-3591283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):40, 27

               
               
               Conread position:735-941
               
               
               Cow position:chr15:34223959-34223757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):190, 135

               
               
               Conread position:739-952
               
               
               Cow position:chr15:46283829-46284037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:741-959
               
               
               Cow position:chr15:25595441-25595656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):207, 111

               
               
               Conread position:742-951
               
               
               Cow position:chr15:17124382-17124591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):26, 34

               
               
               Conread position:743-941
               
               
               Cow position:chr15:6082512-6082710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:745-937
               
               
               Cow position:chr15:40844536-40844727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):7, 20

               
               
               Conread position:746-960
               
               
               Cow position:chr15:20566209-20566000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:750-951
               
               
               Cow position:chr15:35577281-35577073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:751-949
               
               
               Cow position:chr15:18942106-18941916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:754-958
               
               
               Cow position:chr15:20566988-20566786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):189, 10

               
               
               Conread position:771-959
               
               
               Cow position:chr15:15147157-15147338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):180, 22

               
               
               Conread position:772-941
               
               
               Cow position:chr15:29291899-29292068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:772-959
               
               
               Cow position:chr15:10199388-10199204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):12, 67

               
               
               Conread position:773-940
               
               
               Cow position:chr15:12045482-12045650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:773-951
               
               
               Cow position:chr15:30956268-30956445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):167, 96

               
               
               Conread position:773-951
               
               
               Cow position:chr15:52791992-52791820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:774-929
               
               
               Cow position:chr15:16644732-16644886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:774-936
               
               
               Cow position:chr15:18703881-18704038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):60, 83

               
               
               Conread position:774-940
               
               
               Cow position:chr15:4500757-4500589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:774-941
               
               
               Cow position:chr15:2931514-2931681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):80, 15

               
               
               Conread position:774-941
               
               
               Cow position:chr15:27975817-27975983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):156, 0

               
               
               Conread position:774-941
               
               
               Cow position:chr15:32022263-32022427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):80, 40

               
               
               Conread position:774-942
               
               
               Cow position:chr15:49483682-49483518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:774-949
               
               
               Cow position:chr15:44089109-44089282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:774-949
               
               
               Cow position:chr15:44119413-44119587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:775-940
               
               
               Cow position:chr15:48372872-48373035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:775-941
               
               
               Cow position:chr15:840095-840257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):58, 67

               
               
               Conread position:775-941
               
               
               Cow position:chr15:24124786-24124613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):18, 79

               
               
               Conread position:775-941
               
               
               Cow position:chr15:28099165-28099001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):163, 86

               
               
               Conread position:775-948
               
               
               Cow position:chr15:26127773-26127950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:775-950
               
               
               Cow position:chr15:26617992-26617816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:775-951
               
               
               Cow position:chr15:8997351-8997170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):79, 7

               
               
               Conread position:775-951
               
               
               Cow position:chr15:11908895-11909067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:775-951
               
               
               Cow position:chr15:43633981-43634150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:775-954
               
               
               Cow position:chr15:25366010-25366188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):85, 27

               
               
               Conread position:775-956
               
               
               Cow position:chr15:29928019-29927836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):170, 37

               
               
               Conread position:775-960
               
               
               Cow position:chr15:848696-848517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):173, 93

               
               
               Conread position:775-960
               
               
               Cow position:chr15:40562629-40562812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:776-937
               
               
               Cow position:chr15:12913446-12913605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:776-938
               
               
               Cow position:chr15:40494420-40494581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:779-957
               
               
               Cow position:chr15:7811480-7811657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:780-915
               
               
               Cow position:chr15:32300426-32300290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:780-930
               
               
               Cow position:chr15:16657521-16657371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:780-951
               
               
               Cow position:chr15:16415345-16415176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:780-956
               
               
               Cow position:chr15:2620523-2620697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):49, 44

               
               
               Conread position:782-940
               
               
               Cow position:chr15:22242450-22242293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:782-941
               
               
               Cow position:chr15:5964057-5964223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:782-941
               
               
               Cow position:chr15:21943101-21942942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:782-941
               
               
               Cow position:chr15:45133894-45134053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:782-944
               
               
               Cow position:chr15:25696251-25696412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:782-951
               
               
               Cow position:chr15:25452056-25451880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:782-951
               
               
               Cow position:chr15:44810115-44809946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:782-960
               
               
               Cow position:chr15:19976597-19976419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):39, 162

               
               
               Conread position:784-948
               
               
               Cow position:chr15:12034641-12034812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:784-959
               
               
               Cow position:chr15:14760593-14760768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:784-959
               
               
               Cow position:chr15:43020585-43020770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:787-941
               
               
               Cow position:chr15:6332423-6332572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:787-959
               
               
               Cow position:chr15:26380703-26380877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):159, 0

               
               
               Conread position:789-951
               
               
               Cow position:chr15:20905993-20906150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):150, 63

               
               
               Conread position:790-938
               
               
               Cow position:chr15:38228175-38228028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:790-960
               
               
               Cow position:chr15:10153711-10153541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):148, 69

               
               
               Conread position:791-939
               
               
               Cow position:chr15:27280676-27280529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:791-951
               
               
               Cow position:chr15:27657142-27656981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:793-949
               
               
               Cow position:chr15:241910-242058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:795-941
               
               
               Cow position:chr15:41348407-41348260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:798-945
               
               
               Cow position:chr15:51831759-51831905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:806-949
               
               
               Cow position:chr15:50953640-50953782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:811-955
               
               
               Cow position:chr15:36539961-36539821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:812-959
               
               
               Cow position:chr15:16492471-16492323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):127, 36

               
               
               Conread position:816-949
               
               
               Cow position:chr15:36904318-36904184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:850-955
               
               
               Cow position:chr15:25125130-25125025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:86
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:537-717
               
               
               Cow position:chr16:42253764-42253584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):23, 18

               
               
               Conread position:547-941
               
               
               Cow position:chr16:13611641-13611239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:281
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):43, 7

               
               
               Conread position:547-951
               
               
               Cow position:chr16:29158937-29159324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:284
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):46, 7

               
               
               Conread position:556-700
               
               
               Cow position:chr16:42072910-42072767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):36, 100

               
               
               Conread position:559-940
               
               
               Cow position:chr16:46770474-46770091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):274, 13

               
               
               Conread position:560-848
               
               
               Cow position:chr16:18402508-18402796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):9, 65

               
               
               Conread position:566-794
               
               
               Cow position:chr16:30515762-30515533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):50, 60

               
               
               Conread position:566-805
               
               
               Cow position:chr16:4981554-4981310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):27, 60

               
               
               Conread position:566-840
               
               
               Cow position:chr16:26373124-26372849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):55, 160

               
               
               Conread position:566-866
               
               
               Cow position:chr16:8933596-8933300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:216
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):63, 142

               
               
               Conread position:566-869
               
               
               Cow position:chr16:53627596-53627298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:207
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):158, 19

               
               
               Conread position:566-879
               
               
               Cow position:chr16:3587208-3587520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):27, 101

               
               
               Conread position:566-886
               
               
               Cow position:chr16:45456786-45457112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):26, 66

               
               
               Conread position:566-930
               
               
               Cow position:chr16:47662540-47662915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:256
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):27, 355

               
               
               Conread position:566-937
               
               
               Cow position:chr16:41530464-41530112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:256
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):27, 139

               
               
               Conread position:566-941
               
               
               Cow position:chr16:48398419-48398058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:257
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):34, 24

               
               
               Conread position:566-941
               
               
               Cow position:chr16:51598776-51598413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:257
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):20, 58

               
               
               Conread position:566-948
               
               
               Cow position:chr16:47643246-47643638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:271
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):21, 42

               
               
               Conread position:566-959
               
               
               Cow position:chr16:8066054-8065666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 25

               
               
               Conread position:566-959
               
               
               Cow position:chr16:21450674-21451068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 146

               
               
               Conread position:566-959
               
               
               Cow position:chr16:46433496-46433106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 25

               
               
               Conread position:568-941
               
               
               Cow position:chr16:7075738-7076120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:257
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):29, 149

               
               
               Conread position:569-819
               
               
               Cow position:chr16:16096570-16096817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):133, 16

               
               
               Conread position:569-848
               
               
               Cow position:chr16:10148111-10148392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):50, 16

               
               
               Conread position:569-937
               
               
               Cow position:chr16:46552643-46552988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:255
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):5, 62

               
               
               Conread position:569-947
               
               
               Cow position:chr16:4059189-4059566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:265
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):141, 33

               
               
               Conread position:569-958
               
               
               Cow position:chr16:10040008-10039626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 79

               
               
               Conread position:571-959
               
               
               Cow position:chr16:37025196-37024809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):5, 41

               
               
               Conread position:572-948
               
               
               Cow position:chr16:3246371-3245993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 100

               
               
               Conread position:573-880
               
               
               Cow position:chr16:19408680-19408386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):15, 52

               
               
               Conread position:574-830
               
               
               Cow position:chr16:12633724-12633976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):96, 144

               
               
               Conread position:574-940
               
               
               Cow position:chr16:4857259-4856900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 51

               
               
               Conread position:574-945
               
               
               Cow position:chr16:7504925-7505281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:247
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):18, 50

               
               
               Conread position:574-959
               
               
               Cow position:chr16:46521733-46522108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:264
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):19, 72

               
               
               Conread position:575-840
               
               
               Cow position:chr16:14758570-14758837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):17, 146

               
               
               Conread position:576-700
               
               
               Cow position:chr16:30209596-30209719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:576-743
               
               
               Cow position:chr16:39385248-39385415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):147, 47

               
               
               Conread position:576-755
               
               
               Cow position:chr16:31159735-31159557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):12, 133

               
               
               Conread position:576-812
               
               
               Cow position:chr16:35937180-35937411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):146, 35

               
               
               Conread position:576-830
               
               
               Cow position:chr16:42217843-42217598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):147, 14

               
               
               Conread position:576-840
               
               
               Cow position:chr16:42345764-42345511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):16, 48

               
               
               Conread position:576-847
               
               
               Cow position:chr16:38119602-38119341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:200
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:576-874
               
               
               Cow position:chr16:10772973-10773256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):146, 48

               
               
               Conread position:576-894
               
               
               Cow position:chr16:22380516-22380202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):16, 130

               
               
               Conread position:576-936
               
               
               Cow position:chr16:15762316-15761956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:242
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):185, 11

               
               
               Conread position:576-937
               
               
               Cow position:chr16:48580774-48581123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:576-938
               
               
               Cow position:chr16:6263019-6262652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:243
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):44, 338

               
               
               Conread position:576-941
               
               
               Cow position:chr16:8494154-8493789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:241
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):125, 15

               
               
               Conread position:576-942
               
               
               Cow position:chr16:50906314-50906679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:255
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):44, 15

               
               
               Conread position:576-951
               
               
               Cow position:chr16:3047502-3047133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):11, 49

               
               
               Conread position:576-951
               
               
               Cow position:chr16:4275902-4275533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):11, 49

               
               
               Conread position:576-952
               
               
               Cow position:chr16:7010913-7011283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:252
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:576-959
               
               
               Cow position:chr16:11008188-11008542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:268
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):146, 13

               
               
               Conread position:576-960
               
               
               Cow position:chr16:7582559-7582937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:263
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):44, 13

               
               
               Conread position:577-710
               
               
               Cow position:chr16:30939573-30939708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:577-752
               
               
               Cow position:chr16:44973335-44973508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):15, 119

               
               
               Conread position:577-753
               
               
               Cow position:chr16:26501000-26501173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):15, 25

               
               
               Conread position:577-754
               
               
               Cow position:chr16:4277874-4277696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):11, 79

               
               
               Conread position:577-797
               
               
               Cow position:chr16:39237787-39238005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):15, 47

               
               
               Conread position:577-805
               
               
               Cow position:chr16:13233105-13232882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):145, 11

               
               
               Conread position:577-831
               
               
               Cow position:chr16:32327492-32327751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):15, 55

               
               
               Conread position:577-831
               
               
               Cow position:chr16:50521318-50521569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):15, 49

               
               
               Conread position:577-841
               
               
               Cow position:chr16:52889568-52889308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):11, 55

               
               
               Conread position:577-842
               
               
               Cow position:chr16:12361136-12360869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):15, 50

               
               
               Conread position:577-855
               
               
               Cow position:chr16:8076668-8076385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:577-870
               
               
               Cow position:chr16:5256840-5257129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):15, 47

               
               
               Conread position:577-872
               
               
               Cow position:chr16:32132365-32132642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):15, 119

               
               
               Conread position:577-901
               
               
               Cow position:chr16:48087031-48086713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):15, 111

               
               
               Conread position:577-912
               
               
               Cow position:chr16:41578066-41578397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:234
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):23, 47

               
               
               Conread position:577-923
               
               
               Cow position:chr16:3614588-3614919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:237
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):145, 48

               
               
               Conread position:577-929
               
               
               Cow position:chr16:8840732-8841085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 97

               
               
               Conread position:577-941
               
               
               Cow position:chr16:7152333-7151973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 147

               
               
               Conread position:577-941
               
               
               Cow position:chr16:43105673-43105311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:242
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):10, 108

               
               
               Conread position:577-942
               
               
               Cow position:chr16:14754482-14754129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:249
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):15, 48

               
               
               Conread position:577-948
               
               
               Cow position:chr16:6016555-6016177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:250
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):10, 289

               
               
               Conread position:577-949
               
               
               Cow position:chr16:9497438-9497052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 140

               
               
               Conread position:577-949
               
               
               Cow position:chr16:33130299-33130664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):66, 36

               
               
               Conread position:577-950
               
               
               Cow position:chr16:9932999-9933370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:260
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):15, 67

               
               
               Conread position:577-951
               
               
               Cow position:chr16:31117774-31117410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:248
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):21, 30

               
               
               Conread position:577-951
               
               
               Cow position:chr16:38905386-38905012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:265
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):144, 11

               
               
               Conread position:577-955
               
               
               Cow position:chr16:8068976-8068601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:253
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):256, 16

               
               
               Conread position:577-955
               
               
               Cow position:chr16:11775210-11774836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:264
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):15, 125

               
               
               Conread position:577-956
               
               
               Cow position:chr16:51710288-51709934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:258
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):15, 47

               
               
               Conread position:577-958
               
               
               Cow position:chr16:820091-820466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 11

               
               
               Conread position:577-958
               
               
               Cow position:chr16:17745675-17746061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 36

               
               
               Conread position:577-959
               
               
               Cow position:chr16:49125688-49125300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 48

               
               
               Conread position:578-805
               
               
               Cow position:chr16:22860918-22860702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:578-841
               
               
               Cow position:chr16:4699137-4698885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):144, 14

               
               
               Conread position:578-896
               
               
               Cow position:chr16:42752697-42753000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:578-911
               
               
               Cow position:chr16:51113036-51112711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:222
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):10, 125

               
               
               Conread position:578-948
               
               
               Cow position:chr16:47245425-47245795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):15, 121

               
               
               Conread position:578-958
               
               
               Cow position:chr16:48145565-48145189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:264
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):47, 166

               
               
               Conread position:579-941
               
               
               Cow position:chr16:52835040-52834701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:251
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):144, 44

               
               
               Conread position:580-736
               
               
               Cow position:chr16:28692875-28692723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):142, 16

               
               
               Conread position:580-935
               
               
               Cow position:chr16:5415917-5415551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:243
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):62, 8

               
               
               Conread position:580-941
               
               
               Cow position:chr16:44584593-44584243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):74, 43

               
               
               Conread position:580-956
               
               
               Cow position:chr16:11957741-11957363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 200

               
               
               Conread position:581-727
               
               
               Cow position:chr16:17665481-17665630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:581-751
               
               
               Cow position:chr16:11568274-11568105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):18, 89

               
               
               Conread position:581-752
               
               
               Cow position:chr16:16280600-16280434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):140, 66

               
               
               Conread position:581-808
               
               
               Cow position:chr16:39646394-39646615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):44, 66

               
               
               Conread position:581-843
               
               
               Cow position:chr16:4902433-4902693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):11, 44

               
               
               Conread position:581-853
               
               
               Cow position:chr16:28833683-28833958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):11, 44

               
               
               Conread position:581-855
               
               
               Cow position:chr16:48494708-48494437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):142, 42

               
               
               Conread position:581-860
               
               
               Cow position:chr16:3633957-3634238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):7, 43

               
               
               Conread position:581-875
               
               
               Cow position:chr16:5363740-5364038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:581-896
               
               
               Cow position:chr16:37452774-37452462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 145

               
               
               Conread position:581-924
               
               
               Cow position:chr16:4192575-4192248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:245
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):11, 76

               
               
               Conread position:581-927
               
               
               Cow position:chr16:15960447-15960092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:245
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):5, 44

               
               
               Conread position:581-939
               
               
               Cow position:chr16:54579015-54579363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:243
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):132, 43

               
               
               Conread position:581-941
               
               
               Cow position:chr16:12273912-12274270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 126

               
               
               Conread position:581-941
               
               
               Cow position:chr16:18757996-18757635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:248
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):11, 70

               
               
               Conread position:581-941
               
               
               Cow position:chr16:23563981-23564338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 126

               
               
               Conread position:581-941
               
               
               Cow position:chr16:29557783-29557424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 47

               
               
               Conread position:581-949
               
               
               Cow position:chr16:34153730-34153362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 128

               
               
               Conread position:581-951
               
               
               Cow position:chr16:35195761-35195399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:257
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):11, 86

               
               
               Conread position:581-957
               
               
               Cow position:chr16:31079252-31078885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:260
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):63, 42

               
               
               Conread position:581-959
               
               
               Cow position:chr16:2223559-2223177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 362

               
               
               Conread position:581-959
               
               
               Cow position:chr16:4972177-4971804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:253
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):7, 86

               
               
               Conread position:581-959
               
               
               Cow position:chr16:38243818-38243445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 129

               
               
               Conread position:583-949
               
               
               Cow position:chr16:18354106-18353746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:252
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):9, 70

               
               
               Conread position:584-911
               
               
               Cow position:chr16:10592283-10592613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):141, 39

               
               
               Conread position:585-752
               
               
               Cow position:chr16:21369332-21369502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:585-824
               
               
               Cow position:chr16:39514226-39513990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):119, 38

               
               
               Conread position:585-855
               
               
               Cow position:chr16:53048403-53048668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):7, 61

               
               
               Conread position:585-860
               
               
               Cow position:chr16:35188103-35188371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:585-862
               
               
               Cow position:chr16:56831888-56831617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):52, 70

               
               
               Conread position:585-872
               
               
               Cow position:chr16:35623392-35623117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):242, 42

               
               
               Conread position:585-874
               
               
               Cow position:chr16:52133666-52133382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):41, 122

               
               
               Conread position:585-878
               
               
               Cow position:chr16:17626779-17627069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):137, 117

               
               
               Conread position:585-880
               
               
               Cow position:chr16:49169536-49169239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 39

               
               
               Conread position:585-933
               
               
               Cow position:chr16:424962-424617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:237
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):112, 20

               
               
               Conread position:585-937
               
               
               Cow position:chr16:14685540-14685195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:244
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):222, 38

               
               
               Conread position:585-941
               
               
               Cow position:chr16:33299242-33299597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:231
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):41, 127

               
               
               Conread position:585-941
               
               
               Cow position:chr16:53813810-53813449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):41, 126

               
               
               Conread position:585-941
               
               
               Cow position:chr16:56231676-56232012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:249
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:585-945
               
               
               Cow position:chr16:6887596-6887244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):121, 40

               
               
               Conread position:585-952
               
               
               Cow position:chr16:15370528-15370895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:258
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):44, 116

               
               
               Conread position:585-955
               
               
               Cow position:chr16:591963-591590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 101

               
               
               Conread position:585-959
               
               
               Cow position:chr16:6344061-6343688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):145, 25

               
               
               Conread position:586-854
               
               
               Cow position:chr16:25380646-25380379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):33, 134

               
               
               Conread position:586-951
               
               
               Cow position:chr16:9600283-9600628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):354, 62

               
               
               Conread position:589-716
               
               
               Cow position:chr16:23810766-23810893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):109, 35

               
               
               Conread position:591-734
               
               
               Cow position:chr16:7082880-7082732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:591-750
               
               
               Cow position:chr16:9136031-9136193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:591-751
               
               
               Cow position:chr16:47620236-47620392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):130, 32

               
               
               Conread position:591-761
               
               
               Cow position:chr16:13791372-13791540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):131, 79

               
               
               Conread position:591-762
               
               
               Cow position:chr16:39417262-39417096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-766
               
               
               Cow position:chr16:22868320-22868150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):35, 81

               
               
               Conread position:591-766
               
               
               Cow position:chr16:56912862-56912685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):111, 124

               
               
               Conread position:591-791
               
               
               Cow position:chr16:11619605-11619802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):113, 58

               
               
               Conread position:591-792
               
               
               Cow position:chr16:21905021-21905216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):131, 33

               
               
               Conread position:591-799
               
               
               Cow position:chr16:4372639-4372435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):131, 58

               
               
               Conread position:591-802
               
               
               Cow position:chr16:10651035-10650824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):129, 32

               
               
               Conread position:591-805
               
               
               Cow position:chr16:24672502-24672291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):32, 73

               
               
               Conread position:591-807
               
               
               Cow position:chr16:37380122-37380339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):32, 24

               
               
               Conread position:591-808
               
               
               Cow position:chr16:16548466-16548683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):118, 5

               
               
               Conread position:591-812
               
               
               Cow position:chr16:13195486-13195266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):131, 34

               
               
               Conread position:591-816
               
               
               Cow position:chr16:43661300-43661528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):111, 33

               
               
               Conread position:591-830
               
               
               Cow position:chr16:25965352-25965591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):30, 54

               
               
               Conread position:591-831
               
               
               Cow position:chr16:11105408-11105647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):83, 32

               
               
               Conread position:591-834
               
               
               Cow position:chr16:53891926-53891691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):79, 32

               
               
               Conread position:591-837
               
               
               Cow position:chr16:30715351-30715604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):95, 32

               
               
               Conread position:591-839
               
               
               Cow position:chr16:5725323-5725568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):111, 33

               
               
               Conread position:591-840
               
               
               Cow position:chr16:12060272-12060518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-844
               
               
               Cow position:chr16:23738034-23738287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):130, 92

               
               
               Conread position:591-846
               
               
               Cow position:chr16:23871793-23871542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):30, 68

               
               
               Conread position:591-847
               
               
               Cow position:chr16:11102969-11102712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:186
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):36, 132

               
               
               Conread position:591-848
               
               
               Cow position:chr16:17982287-17982033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):35, 60

               
               
               Conread position:591-854
               
               
               Cow position:chr16:5845525-5845785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):163, 111

               
               
               Conread position:591-855
               
               
               Cow position:chr16:4626536-4626274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):118, 32

               
               
               Conread position:591-855
               
               
               Cow position:chr16:42340051-42340313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):131, 66

               
               
               Conread position:591-855
               
               
               Cow position:chr16:48340840-48340577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):116, 31

               
               
               Conread position:591-865
               
               
               Cow position:chr16:17288796-17289073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):52, 33

               
               
               Conread position:591-866
               
               
               Cow position:chr16:11806531-11806800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):118, 32

               
               
               Conread position:591-870
               
               
               Cow position:chr16:20634023-20633745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):124, 33

               
               
               Conread position:591-874
               
               
               Cow position:chr16:675352-675626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):35, 72

               
               
               Conread position:591-874
               
               
               Cow position:chr16:35296928-35297214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):131, 55

               
               
               Conread position:591-874
               
               
               Cow position:chr16:40562086-40562367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):112, 32

               
               
               Conread position:591-875
               
               
               Cow position:chr16:5726777-5727067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):110, 199

               
               
               Conread position:591-875
               
               
               Cow position:chr16:20025302-20025577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-875
               
               
               Cow position:chr16:22804736-22804463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):123, 44

               
               
               Conread position:591-875
               
               
               Cow position:chr16:41697232-41696955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):30, 16

               
               
               Conread position:591-875
               
               
               Cow position:chr16:43801064-43800780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):268, 222

               
               
               Conread position:591-878
               
               
               Cow position:chr16:6319053-6319343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-887
               
               
               Cow position:chr16:594374-594076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):28, 123

               
               
               Conread position:591-894
               
               
               Cow position:chr16:13969525-13969207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):32, 132

               
               
               Conread position:591-899
               
               
               Cow position:chr16:54679524-54679821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):129, 32

               
               
               Conread position:591-902
               
               
               Cow position:chr16:7702390-7702686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):270, 51

               
               
               Conread position:591-903
               
               
               Cow position:chr16:5896274-5896582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):104, 32

               
               
               Conread position:591-904
               
               
               Cow position:chr16:11615377-11615080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-904
               
               
               Cow position:chr16:33226683-33226375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:210
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-904
               
               
               Cow position:chr16:41689551-41689860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):50, 28

               
               
               Conread position:591-917
               
               
               Cow position:chr16:56846040-56845725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):36, 52

               
               
               Conread position:591-919
               
               
               Cow position:chr16:45609846-45610166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:226
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):132, 24

               
               
               Conread position:591-922
               
               
               Cow position:chr16:42242261-42241942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):131, 111

               
               
               Conread position:591-925
               
               
               Cow position:chr16:25170246-25170577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):55, 16

               
               
               Conread position:591-927
               
               
               Cow position:chr16:24702707-24703036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):130, 104

               
               
               Conread position:591-927
               
               
               Cow position:chr16:25386836-25387155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:231
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-928
               
               
               Cow position:chr16:14568626-14568304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:237
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-929
               
               
               Cow position:chr16:23730080-23729730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):16, 114

               
               
               Conread position:591-929
               
               
               Cow position:chr16:31348912-31348574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:238
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):111, 32

               
               
               Conread position:591-929
               
               
               Cow position:chr16:33645870-33646203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 33

               
               
               Conread position:591-935
               
               
               Cow position:chr16:16402468-16402125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):72, 33

               
               
               Conread position:591-935
               
               
               Cow position:chr16:20476391-20476727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:246
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):35, 12

               
               
               Conread position:591-935
               
               
               Cow position:chr16:22850183-22850523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:240
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):86, 43

               
               
               Conread position:591-935
               
               
               Cow position:chr16:29037759-29038111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 194

               
               
               Conread position:591-935
               
               
               Cow position:chr16:39165099-39165427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:241
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):139, 67

               
               
               Conread position:591-937
               
               
               Cow position:chr16:17142791-17143134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:238
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):40, 117

               
               
               Conread position:591-937
               
               
               Cow position:chr16:23681225-23681557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 32

               
               
               Conread position:591-937
               
               
               Cow position:chr16:29766191-29766516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:240
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):15, 22

               
               
               Conread position:591-937
               
               
               Cow position:chr16:43275877-43276226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:249
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):110, 33

               
               
               Conread position:591-939
               
               
               Cow position:chr16:7442247-7441902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 120

               
               
               Conread position:591-939
               
               
               Cow position:chr16:49229916-49229576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 33

               
               
               Conread position:591-940
               
               
               Cow position:chr16:26676834-26676492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 100

               
               
               Conread position:591-940
               
               
               Cow position:chr16:32781221-32781571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:234
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):61, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr16:2750850-2751174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:591-941
               
               
               Cow position:chr16:3303887-3304236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:251
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):265, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr16:3821392-3821730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):35, 108

               
               
               Conread position:591-941
               
               
               Cow position:chr16:8323127-8322796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):131, 33

               
               
               Conread position:591-941
               
               
               Cow position:chr16:9973643-9973282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:246
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):252, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr16:24825927-24826291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):255, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr16:25839474-25839811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:241
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):134, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr16:32523095-32523442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):310, 131

               
               
               Conread position:591-941
               
               
               Cow position:chr16:32970223-32969882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr16:33198579-33198233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr16:42399044-42398689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):36, 80

               
               
               Conread position:591-941
               
               
               Cow position:chr16:43308710-43308365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 91

               
               
               Conread position:591-941
               
               
               Cow position:chr16:44744283-44743930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 123

               
               
               Conread position:591-941
               
               
               Cow position:chr16:50289004-50289357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 33

               
               
               Conread position:591-941
               
               
               Cow position:chr16:52275275-52274935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:249
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):139, 33

               
               
               Conread position:591-941
               
               
               Cow position:chr16:53553858-53553516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:234
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):35, 54

               
               
               Conread position:591-941
               
               
               Cow position:chr16:56787923-56787574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):35, 106

               
               
               Conread position:591-942
               
               
               Cow position:chr16:7456605-7456257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):38, 117

               
               
               Conread position:591-944
               
               
               Cow position:chr16:23058578-23058230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):83, 77

               
               
               Conread position:591-945
               
               
               Cow position:chr16:14242227-14242575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 32

               
               
               Conread position:591-945
               
               
               Cow position:chr16:27723068-27723414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:244
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):124, 34

               
               
               Conread position:591-948
               
               
               Cow position:chr16:16265244-16264911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):154, 58

               
               
               Conread position:591-948
               
               
               Cow position:chr16:23823164-23822822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:250
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):28, 86

               
               
               Conread position:591-949
               
               
               Cow position:chr16:9615384-9615007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:263
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):31, 20

               
               
               Conread position:591-949
               
               
               Cow position:chr16:26649774-26649424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:251
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-949
               
               
               Cow position:chr16:31558747-31559112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:257
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):31, 184

               
               
               Conread position:591-949
               
               
               Cow position:chr16:33588523-33588869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):32, 89

               
               
               Conread position:591-949
               
               
               Cow position:chr16:35343617-35343264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):35, 95

               
               
               Conread position:591-949
               
               
               Cow position:chr16:40333466-40333126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):113, 30

               
               
               Conread position:591-950
               
               
               Cow position:chr16:15824589-15824232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 33

               
               
               Conread position:591-950
               
               
               Cow position:chr16:20205311-20205672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 106

               
               
               Conread position:591-951
               
               
               Cow position:chr16:3633150-3633487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:252
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):31, 5

               
               
               Conread position:591-951
               
               
               Cow position:chr16:9985531-9985191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):354, 33

               
               
               Conread position:591-951
               
               
               Cow position:chr16:12320077-12320433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-951
               
               
               Cow position:chr16:44147573-44147218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):35, 77

               
               
               Conread position:591-951
               
               
               Cow position:chr16:45139527-45139875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:252
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):83, 32

               
               
               Conread position:591-951
               
               
               Cow position:chr16:52636525-52636185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:243
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):131, 58

               
               
               Conread position:591-954
               
               
               Cow position:chr16:13689520-13689878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 32

               
               
               Conread position:591-955
               
               
               Cow position:chr16:45813846-45813483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):44, 12

               
               
               Conread position:591-955
               
               
               Cow position:chr16:49126330-49125974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:255
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):130, 32

               
               
               Conread position:591-956
               
               
               Cow position:chr16:33704662-33705018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-957
               
               
               Cow position:chr16:16597421-16597776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:254
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):238, 26

               
               
               Conread position:591-957
               
               
               Cow position:chr16:32587054-32587428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:248
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):31, 54

               
               
               Conread position:591-958
               
               
               Cow position:chr16:7418239-7418592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:253
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):49, 32

               
               
               Conread position:591-958
               
               
               Cow position:chr16:34257185-34256817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 120

               
               
               Conread position:591-958
               
               
               Cow position:chr16:54341843-54342222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:256
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):196, 33

               
               
               Conread position:591-959
               
               
               Cow position:chr16:600804-601166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:250
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):35, 101

               
               
               Conread position:591-959
               
               
               Cow position:chr16:16236273-16235913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):139, 93

               
               
               Conread position:591-959
               
               
               Cow position:chr16:17945377-17945762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):132, 33

               
               
               Conread position:591-959
               
               
               Cow position:chr16:33753288-33753652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:242
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):32, 57

               
               
               Conread position:591-959
               
               
               Cow position:chr16:42734158-42733803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:259
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):113, 26

               
               
               Conread position:591-959
               
               
               Cow position:chr16:56126924-56126562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:249
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):161, 75

               
               
               Conread position:591-960
               
               
               Cow position:chr16:8025990-8025647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:245
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):343, 26

               
               
               Conread position:591-960
               
               
               Cow position:chr16:29712275-29712633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 132

               
               
               Conread position:592-735
               
               
               Cow position:chr16:9790775-9790634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:592-816
               
               
               Cow position:chr16:13752268-13752054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:592-846
               
               
               Cow position:chr16:23366100-23366348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):34, 10

               
               
               Conread position:592-847
               
               
               Cow position:chr16:15808831-15809087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):145, 32

               
               
               Conread position:592-847
               
               
               Cow position:chr16:43505942-43505702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):130, 32

               
               
               Conread position:592-848
               
               
               Cow position:chr16:14974676-14974434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):54, 33

               
               
               Conread position:592-872
               
               
               Cow position:chr16:5351976-5351708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):28, 53

               
               
               Conread position:592-879
               
               
               Cow position:chr16:48493035-48493321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):86, 32

               
               
               Conread position:592-930
               
               
               Cow position:chr16:30290173-30290500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):34, 106

               
               
               Conread position:592-937
               
               
               Cow position:chr16:14106502-14106840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:245
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):131, 31

               
               
               Conread position:592-937
               
               
               Cow position:chr16:29380110-29380454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:243
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):34, 95

               
               
               Conread position:592-937
               
               
               Cow position:chr16:55784902-55784550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):125, 104

               
               
               Conread position:592-940
               
               
               Cow position:chr16:42078984-42078649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:243
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:592-941
               
               
               Cow position:chr16:16552418-16552766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:238
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):34, 82

               
               
               Conread position:592-941
               
               
               Cow position:chr16:24128561-24128907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:233
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):138, 105

               
               
               Conread position:592-941
               
               
               Cow position:chr16:31978331-31977986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:234
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):30, 83

               
               
               Conread position:592-941
               
               
               Cow position:chr16:52169922-52170253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:236
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:592-942
               
               
               Cow position:chr16:1549017-1548680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:245
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):78, 33

               
               
               Conread position:592-949
               
               
               Cow position:chr16:9729061-9729406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:241
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):35, 10

               
               
               Conread position:592-949
               
               
               Cow position:chr16:26610494-26610850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:240
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):34, 74

               
               
               Conread position:592-949
               
               
               Cow position:chr16:37116927-37117284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:245
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):28, 125

               
               
               Conread position:592-949
               
               
               Cow position:chr16:38191328-38191685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:238
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):232, 129

               
               
               Conread position:592-949
               
               
               Cow position:chr16:46752414-46752062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:232
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):35, 53

               
               
               Conread position:592-950
               
               
               Cow position:chr16:53509130-53508782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:243
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):34, 106

               
               
               Conread position:592-951
               
               
               Cow position:chr16:23483148-23483491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):35, 10

               
               
               Conread position:592-951
               
               
               Cow position:chr16:39695617-39695267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):31, 56

               
               
               Conread position:592-951
               
               
               Cow position:chr16:56082504-56082152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 22

               
               
               Conread position:592-956
               
               
               Cow position:chr16:47820430-47820789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:253
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):131, 30

               
               
               Conread position:592-959
               
               
               Cow position:chr16:7136498-7136128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:245
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):42, 129

               
               
               Conread position:592-959
               
               
               Cow position:chr16:50078887-50078540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:253
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):27, 115

               
               
               Conread position:592-960
               
               
               Cow position:chr16:23472603-23472963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:254
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):109, 120

               
               
               Conread position:593-752
               
               
               Cow position:chr16:4144921-4145080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):30, 34

               
               
               Conread position:593-766
               
               
               Cow position:chr16:45535037-45535206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):129, 94

               
               
               Conread position:593-822
               
               
               Cow position:chr16:30143352-30143116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):29, 115

               
               
               Conread position:593-839
               
               
               Cow position:chr16:30096273-30096034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):30, 96

               
               
               Conread position:593-842
               
               
               Cow position:chr16:5836440-5836689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):153, 32

               
               
               Conread position:593-855
               
               
               Cow position:chr16:20069685-20069949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):45, 22

               
               
               Conread position:593-875
               
               
               Cow position:chr16:42633898-42633607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:209
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):28, 162

               
               
               Conread position:593-875
               
               
               Cow position:chr16:50688382-50688656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):140, 8

               
               
               Conread position:593-918
               
               
               Cow position:chr16:56522617-56522296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:220
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):33, 105

               
               
               Conread position:593-922
               
               
               Cow position:chr16:47301741-47302060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:213
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):33, 58

               
               
               Conread position:593-930
               
               
               Cow position:chr16:5654369-5654690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):33, 52

               
               
               Conread position:593-930
               
               
               Cow position:chr16:14360961-14361285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):33, 104

               
               
               Conread position:593-935
               
               
               Cow position:chr16:4910674-4910327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 117

               
               
               Conread position:593-937
               
               
               Cow position:chr16:41752715-41752385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:238
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):106, 30

               
               
               Conread position:593-937
               
               
               Cow position:chr16:51246805-51247141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:252
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):32, 65

               
               
               Conread position:593-939
               
               
               Cow position:chr16:51500791-51501126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:241
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):130, 30

               
               
               Conread position:593-941
               
               
               Cow position:chr16:935585-935257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):231, 30

               
               
               Conread position:593-941
               
               
               Cow position:chr16:7542140-7542486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:256
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):28, 112

               
               
               Conread position:593-941
               
               
               Cow position:chr16:54298326-54298668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:229
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):49, 108

               
               
               Conread position:593-941
               
               
               Cow position:chr16:56565453-56565788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):35, 117

               
               
               Conread position:593-944
               
               
               Cow position:chr16:957039-956682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:236
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):137, 31

               
               
               Conread position:593-944
               
               
               Cow position:chr16:50409087-50409451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:247
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):66, 14

               
               
               Conread position:593-945
               
               
               Cow position:chr16:13989839-13990170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:232
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):65, 30

               
               
               Conread position:593-948
               
               
               Cow position:chr16:42970071-42969714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:232
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):33, 55

               
               
               Conread position:593-949
               
               
               Cow position:chr16:8448787-8448452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:251
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:593-949
               
               
               Cow position:chr16:15504665-15504324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):36, 103

               
               
               Conread position:593-949
               
               
               Cow position:chr16:48385543-48385209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):129, 31

               
               
               Conread position:593-958
               
               
               Cow position:chr16:8522538-8522174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 171

               
               
               Conread position:593-959
               
               
               Cow position:chr16:7665492-7665857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 122

               
               
               Conread position:593-959
               
               
               Cow position:chr16:13307006-13306651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 30

               
               
               Conread position:593-959
               
               
               Cow position:chr16:13698369-13698739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 123

               
               
               Conread position:593-959
               
               
               Cow position:chr16:19643746-19644107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:253
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):94, 30

               
               
               Conread position:593-959
               
               
               Cow position:chr16:19756938-19756563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:264
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):81, 31

               
               
               Conread position:593-959
               
               
               Cow position:chr16:38663851-38663490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 76

               
               
               Conread position:593-959
               
               
               Cow position:chr16:47242817-47243178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:247
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):131, 77

               
               
               Conread position:593-959
               
               
               Cow position:chr16:55683153-55683519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 118

               
               
               Conread position:594-800
               
               
               Cow position:chr16:14699777-14699980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):32, 123

               
               
               Conread position:594-806
               
               
               Cow position:chr16:54083893-54084104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):128, 112

               
               
               Conread position:594-873
               
               
               Cow position:chr16:7549826-7550101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):103, 29

               
               
               Conread position:594-939
               
               
               Cow position:chr16:238124-238464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:235
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):115, 29

               
               
               Conread position:594-943
               
               
               Cow position:chr16:56510351-56510008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:236
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):39, 68

               
               
               Conread position:594-958
               
               
               Cow position:chr16:38708972-38708619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):198, 29

               
               
               Conread position:594-959
               
               
               Cow position:chr16:33596077-33595732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:246
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):32, 125

               
               
               Conread position:595-880
               
               
               Cow position:chr16:47854802-47855080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):173, 75

               
               
               Conread position:595-937
               
               
               Cow position:chr16:42444015-42444356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):76, 29

               
               
               Conread position:595-937
               
               
               Cow position:chr16:48095902-48095573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 28

               
               
               Conread position:595-949
               
               
               Cow position:chr16:24855401-24855742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):128, 28

               
               
               Conread position:596-705
               
               
               Cow position:chr16:33752056-33752165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:92
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:596-761
               
               
               Cow position:chr16:33229934-33230099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):30, 115

               
               
               Conread position:596-866
               
               
               Cow position:chr16:53830725-53830464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):106, 27

               
               
               Conread position:596-870
               
               
               Cow position:chr16:7498921-7499180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:596-936
               
               
               Cow position:chr16:54225646-54225322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:218
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:596-941
               
               
               Cow position:chr16:49336088-49336420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 114

               
               
               Conread position:596-949
               
               
               Cow position:chr16:7976847-7977192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:246
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):30, 52

               
               
               Conread position:596-949
               
               
               Cow position:chr16:29608379-29608730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):261, 27

               
               
               Conread position:596-951
               
               
               Cow position:chr16:22842199-22841837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:253
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):120, 88

               
               
               Conread position:596-959
               
               
               Cow position:chr16:18205821-18206173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 30

               
               
               Conread position:597-900
               
               
               Cow position:chr16:33482299-33482608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):100, 46

               
               
               Conread position:597-940
               
               
               Cow position:chr16:54710172-54709854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):165, 26

               
               
               Conread position:597-941
               
               
               Cow position:chr16:11660583-11660270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:597-959
               
               
               Cow position:chr16:46655146-46655500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:250
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):126, 98

               
               
               Conread position:597-960
               
               
               Cow position:chr16:32302131-32301785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:256
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):22, 50

               
               
               Conread position:598-941
               
               
               Cow position:chr16:50453624-50453948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):124, 100

               
               
               Conread position:598-954
               
               
               Cow position:chr16:9904955-9905309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):281, 25

               
               
               Conread position:598-959
               
               
               Cow position:chr16:50282563-50282217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 26

               
               
               Conread position:599-840
               
               
               Cow position:chr16:571050-570818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):123, 24

               
               
               Conread position:599-855
               
               
               Cow position:chr16:17282528-17282775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):124, 24

               
               
               Conread position:599-941
               
               
               Cow position:chr16:29095803-29096117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):169, 28

               
               
               Conread position:599-949
               
               
               Cow position:chr16:19047575-19047225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 118

               
               
               Conread position:600-951
               
               
               Cow position:chr16:30320213-30319858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):20, 97

               
               
               Conread position:600-959
               
               
               Cow position:chr16:889491-889158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:242
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):97, 27

               
               
               Conread position:601-930
               
               
               Cow position:chr16:30136029-30135686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:228
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):169, 120

               
               
               Conread position:601-950
               
               
               Cow position:chr16:44210700-44210351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):100, 143

               
               
               Conread position:602-960
               
               
               Cow position:chr16:40446118-40446486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 188

               
               
               Conread position:603-916
               
               
               Cow position:chr16:33267583-33267896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:224
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):119, 92

               
               
               Conread position:603-949
               
               
               Cow position:chr16:36121113-36120788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:245
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):119, 98

               
               
               Conread position:603-960
               
               
               Cow position:chr16:7583264-7583618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 106

               
               
               Conread position:604-757
               
               
               Cow position:chr16:26068800-26068952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):118, 19

               
               
               Conread position:604-929
               
               
               Cow position:chr16:48146789-48146466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):119, 19

               
               
               Conread position:604-941
               
               
               Cow position:chr16:30369221-30369550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):22, 41

               
               
               Conread position:604-941
               
               
               Cow position:chr16:53428125-53428454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:227
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):120, 105

               
               
               Conread position:607-918
               
               
               Cow position:chr16:13578989-13578678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 20

               
               
               Conread position:607-940
               
               
               Cow position:chr16:8737936-8738266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:229
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):98, 16

               
               
               Conread position:607-941
               
               
               Cow position:chr16:8959188-8958858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):115, 88

               
               
               Conread position:607-941
               
               
               Cow position:chr16:51696951-51697275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:236
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):12, 45

               
               
               Conread position:607-941
               
               
               Cow position:chr16:55233566-55233878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):117, 16

               
               
               Conread position:607-950
               
               
               Cow position:chr16:23955955-23955622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:246
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):17, 38

               
               
               Conread position:607-950
               
               
               Cow position:chr16:54664930-54664592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):12, 28

               
               
               Conread position:607-955
               
               
               Cow position:chr16:45554314-45554647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):115, 16

               
               
               Conread position:608-941
               
               
               Cow position:chr16:56850215-56850548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):62, 66

               
               
               Conread position:608-944
               
               
               Cow position:chr16:39683236-39682896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 17

               
               
               Conread position:610-846
               
               
               Cow position:chr16:10162693-10162925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):112, 21

               
               
               Conread position:611-922
               
               
               Cow position:chr16:2417720-2417405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):18, 96

               
               
               Conread position:611-957
               
               
               Cow position:chr16:30662386-30662054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:237
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):241, 5

               
               
               Conread position:612-788
               
               
               Cow position:chr16:24249957-24249780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):14, 93

               
               
               Conread position:612-941
               
               
               Cow position:chr16:11082885-11083196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):118, 12

               
               
               Conread position:612-949
               
               
               Cow position:chr16:27019950-27020277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:613-929
               
               
               Cow position:chr16:42200775-42201093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:216
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):110, 94

               
               
               Conread position:613-948
               
               
               Cow position:chr16:13483696-13483369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):58, 11

               
               
               Conread position:613-950
               
               
               Cow position:chr16:22984634-22984959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:237
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):117, 93

               
               
               Conread position:617-941
               
               
               Cow position:chr16:10032520-10032839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 92

               
               
               Conread position:618-918
               
               
               Cow position:chr16:12036794-12036500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:618-937
               
               
               Cow position:chr16:36286798-36286491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):69, 21

               
               
               Conread position:618-941
               
               
               Cow position:chr16:4852234-4851915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):114, 7

               
               
               Conread position:618-941
               
               
               Cow position:chr16:8231469-8231163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):301, 79

               
               
               Conread position:618-949
               
               
               Cow position:chr16:56173687-56173373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:618-959
               
               
               Cow position:chr16:56796784-56796434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 88

               
               
               Conread position:618-960
               
               
               Cow position:chr16:8203924-8203582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):112, 76

               
               
               Conread position:619-948
               
               
               Cow position:chr16:34754078-34753746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):104, 83

               
               
               Conread position:619-959
               
               
               Cow position:chr16:43126064-43125728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):139, 44

               
               
               Conread position:620-855
               
               
               Cow position:chr16:54226715-54226483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):102, 90

               
               
               Conread position:620-874
               
               
               Cow position:chr16:18052214-18052468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):77, 97

               
               
               Conread position:620-879
               
               
               Cow position:chr16:21317712-21317454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):87, 50

               
               
               Conread position:620-941
               
               
               Cow position:chr16:7429261-7429582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):102, 86

               
               
               Conread position:621-761
               
               
               Cow position:chr16:30615095-30614957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:621-956
               
               
               Cow position:chr16:47852708-47852378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):318, 85

               
               
               Conread position:622-945
               
               
               Cow position:chr16:20871912-20872215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):108, 48

               
               
               Conread position:623-842
               
               
               Cow position:chr16:50667172-50667395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:623-863
               
               
               Cow position:chr16:11939928-11940162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):99, 73

               
               
               Conread position:624-918
               
               
               Cow position:chr16:38020000-38020288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):106, 19

               
               
               Conread position:624-950
               
               
               Cow position:chr16:33869873-33869541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):214, 80

               
               
               Conread position:625-874
               
               
               Cow position:chr16:43674763-43675010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):97, 65

               
               
               Conread position:627-838
               
               
               Cow position:chr16:31163236-31163027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):97, 75

               
               
               Conread position:627-846
               
               
               Cow position:chr16:45703077-45702864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:627-855
               
               
               Cow position:chr16:4399627-4399852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):97, 77

               
               
               Conread position:627-855
               
               
               Cow position:chr16:18745624-18745850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):7, 71

               
               
               Conread position:627-867
               
               
               Cow position:chr16:29677740-29677505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):142, 55

               
               
               Conread position:628-929
               
               
               Cow position:chr16:22772870-22773161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):82, 24

               
               
               Conread position:628-959
               
               
               Cow position:chr16:13696787-13696463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):102, 57

               
               
               Conread position:629-941
               
               
               Cow position:chr16:45121931-45122242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):101, 60

               
               
               Conread position:630-941
               
               
               Cow position:chr16:40514587-40514293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:215
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):22, 16

               
               
               Conread position:631-950
               
               
               Cow position:chr16:51241644-51241331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):82, 16

               
               
               Conread position:632-948
               
               
               Cow position:chr16:30186539-30186851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:221
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):90, 74

               
               
               Conread position:634-838
               
               
               Cow position:chr16:42176541-42176746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):25, 56

               
               
               Conread position:634-875
               
               
               Cow position:chr16:3114434-3114676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):17, 69

               
               
               Conread position:634-941
               
               
               Cow position:chr16:39516707-39516396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):51, 85

               
               
               Conread position:634-941
               
               
               Cow position:chr16:45700585-45700280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):96, 72

               
               
               Conread position:636-867
               
               
               Cow position:chr16:34220083-34220315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:636-922
               
               
               Cow position:chr16:12522958-12523239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):24, 15

               
               
               Conread position:638-951
               
               
               Cow position:chr16:4970785-4971100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):61, 71

               
               
               Conread position:639-960
               
               
               Cow position:chr16:35067195-35067518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):119, 67

               
               
               Conread position:643-871
               
               
               Cow position:chr16:48545727-48545954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:643-941
               
               
               Cow position:chr16:56893706-56893415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):87, 30

               
               
               Conread position:643-944
               
               
               Cow position:chr16:56874318-56874029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):57, 41

               
               
               Conread position:643-951
               
               
               Cow position:chr16:34998709-34998412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:205
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):87, 45

               
               
               Conread position:643-951
               
               
               Cow position:chr16:47834836-47835131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):87, 54

               
               
               Conread position:645-958
               
               
               Cow position:chr16:21002479-21002152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):72, 61

               
               
               Conread position:649-860
               
               
               Cow position:chr16:30359148-30358941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):81, 48

               
               
               Conread position:649-959
               
               
               Cow position:chr16:50943295-50943604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):105, 30

               
               
               Conread position:650-861
               
               
               Cow position:chr16:13495952-13496159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):71, 56

               
               
               Conread position:650-922
               
               
               Cow position:chr16:42864812-42864554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:650-926
               
               
               Cow position:chr16:27701339-27701077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):269, 40

               
               
               Conread position:650-941
               
               
               Cow position:chr16:44138587-44138291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):47, 34

               
               
               Conread position:650-948
               
               
               Cow position:chr16:39777816-39778108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):80, 51

               
               
               Conread position:651-929
               
               
               Cow position:chr16:21381647-21381384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:651-941
               
               
               Cow position:chr16:17135145-17134861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):60, 19

               
               
               Conread position:651-958
               
               
               Cow position:chr16:33134856-33135147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):73, 59

               
               
               Conread position:654-949
               
               
               Cow position:chr16:44428797-44429085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:215
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):50, 208

               
               
               Conread position:655-951
               
               
               Cow position:chr16:56671002-56670699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):87, 35

               
               
               Conread position:656-929
               
               
               Cow position:chr16:31565823-31565553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):74, 40

               
               
               Conread position:658-941
               
               
               Cow position:chr16:12542903-12543190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):72, 56

               
               
               Conread position:658-949
               
               
               Cow position:chr16:8017889-8018165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):68, 40

               
               
               Conread position:658-951
               
               
               Cow position:chr16:30305893-30305607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:209
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):65, 112

               
               
               Conread position:658-959
               
               
               Cow position:chr16:9830368-9830666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):109, 48

               
               
               Conread position:659-848
               
               
               Cow position:chr16:12501239-12501051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):20, 49

               
               
               Conread position:659-919
               
               
               Cow position:chr16:1220260-1220000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):40, 66

               
               
               Conread position:659-933
               
               
               Cow position:chr16:40377893-40377620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):83, 54

               
               
               Conread position:660-941
               
               
               Cow position:chr16:56243964-56243684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):21, 44

               
               
               Conread position:660-959
               
               
               Cow position:chr16:9552984-9553267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:661-948
               
               
               Cow position:chr16:35740794-35741087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):71, 49

               
               
               Conread position:662-930
               
               
               Cow position:chr16:42539664-42539393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):35, 48

               
               
               Conread position:664-935
               
               
               Cow position:chr16:50395292-50395569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):58, 33

               
               
               Conread position:665-944
               
               
               Cow position:chr16:33236348-33236080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):109, 32

               
               
               Conread position:673-933
               
               
               Cow position:chr16:31561688-31561946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):48, 181

               
               
               Conread position:673-937
               
               
               Cow position:chr16:42977399-42977670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):50, 171

               
               
               Conread position:673-941
               
               
               Cow position:chr16:42433179-42432917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):32, 157

               
               
               Conread position:673-945
               
               
               Cow position:chr16:47304188-47303908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):172, 33

               
               
               Conread position:673-949
               
               
               Cow position:chr16:11094892-11094616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):30, 38

               
               
               Conread position:673-958
               
               
               Cow position:chr16:23719043-23718754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):59, 24

               
               
               Conread position:673-958
               
               
               Cow position:chr16:46548340-46548045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:212
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:673-959
               
               
               Cow position:chr16:11135046-11134767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):36, 29

               
               
               Conread position:676-949
               
               
               Cow position:chr16:45294482-45294753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):34, 26

               
               
               Conread position:677-960
               
               
               Cow position:chr16:38244684-38244399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):47, 33

               
               
               Conread position:680-927
               
               
               Cow position:chr16:51610892-51610639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):26, 34

               
               
               Conread position:680-941
               
               
               Cow position:chr16:28444545-28444287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):50, 17

               
               
               Conread position:686-941
               
               
               Cow position:chr16:9578546-9578293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):39, 5

               
               
               Conread position:695-930
               
               
               Cow position:chr16:12010051-12010287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:695-944
               
               
               Cow position:chr16:15407597-15407353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:696-929
               
               
               Cow position:chr16:40454497-40454733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:696-948
               
               
               Cow position:chr16:30935817-30936070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:696-950
               
               
               Cow position:chr16:17460125-17460386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):27, 18

               
               
               Conread position:696-959
               
               
               Cow position:chr16:13886501-13886239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):34, 11

               
               
               Conread position:697-949
               
               
               Cow position:chr16:14841318-14841572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:697-956
               
               
               Cow position:chr16:56595428-56595172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):33, 13

               
               
               Conread position:698-951
               
               
               Cow position:chr16:34291334-34291090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):18, 157

               
               
               Conread position:699-951
               
               
               Cow position:chr16:12379390-12379130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):31, 7

               
               
               Conread position:703-951
               
               
               Cow position:chr16:26842715-26842960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):35, 7

               
               
               Conread position:705-929
               
               
               Cow position:chr16:15023665-15023446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):38, 194

               
               
               Conread position:706-920
               
               
               Cow position:chr16:45108815-45109029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):20, 140

               
               
               Conread position:706-955
               
               
               Cow position:chr16:48567503-48567744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):154, 14

               
               
               Conread position:707-926
               
               
               Cow position:chr16:9730238-9730019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):15, 123

               
               
               Conread position:707-941
               
               
               Cow position:chr16:18048186-18047952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):23, 7

               
               
               Conread position:707-941
               
               
               Cow position:chr16:52357572-52357336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:707-948
               
               
               Cow position:chr16:1582958-1582722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):16, 141

               
               
               Conread position:707-955
               
               
               Cow position:chr16:31149347-31149593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):233, 94

               
               
               Conread position:707-959
               
               
               Cow position:chr16:9560527-9560269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):23, 247

               
               
               Conread position:708-941
               
               
               Cow position:chr16:7723671-7723899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):15, 6

               
               
               Conread position:709-918
               
               
               Cow position:chr16:11389603-11389393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:709-948
               
               
               Cow position:chr16:22318982-22318744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):8, 102

               
               
               Conread position:709-949
               
               
               Cow position:chr16:10161210-10160971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):21, 117

               
               
               Conread position:709-951
               
               
               Cow position:chr16:31575114-31575357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:709-951
               
               
               Cow position:chr16:55965153-55965396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):21, 92

               
               
               Conread position:710-935
               
               
               Cow position:chr16:32893599-32893813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):13, 143

               
               
               Conread position:710-944
               
               
               Cow position:chr16:6609533-6609306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):20, 132

               
               
               Conread position:710-949
               
               
               Cow position:chr16:50442518-50442760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:710-955
               
               
               Cow position:chr16:20824448-20824693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):13, 143

               
               
               Conread position:711-929
               
               
               Cow position:chr16:31241319-31241104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):8, 54

               
               
               Conread position:711-937
               
               
               Cow position:chr16:11359123-11359343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):19, 140

               
               
               Conread position:711-937
               
               
               Cow position:chr16:48613503-48613282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:711-941
               
               
               Cow position:chr16:11584432-11584207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):11, 28

               
               
               Conread position:711-950
               
               
               Cow position:chr16:32142062-32142301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):19, 135

               
               
               Conread position:711-957
               
               
               Cow position:chr16:47181193-47180948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):139, 46

               
               
               Conread position:714-948
               
               
               Cow position:chr16:16232028-16232266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):11, 79

               
               
               Conread position:714-949
               
               
               Cow position:chr16:18243717-18243945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):8, 53

               
               
               Conread position:714-949
               
               
               Cow position:chr16:51795628-51795397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):8, 92

               
               
               Conread position:714-952
               
               
               Cow position:chr16:56265477-56265711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):10, 54

               
               
               Conread position:716-935
               
               
               Cow position:chr16:15945279-15945058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):7, 139

               
               
               Conread position:716-941
               
               
               Cow position:chr16:56626915-56627131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:720-949
               
               
               Cow position:chr16:9280136-9279896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:722-944
               
               
               Cow position:chr16:35074546-35074768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):54, 85

               
               
               Conread position:722-958
               
               
               Cow position:chr16:29026192-29026433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):150, 33

               
               
               Conread position:724-949
               
               
               Cow position:chr16:9596356-9596571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:725-875
               
               
               Cow position:chr16:52364926-52365074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:725-945
               
               
               Cow position:chr16:45046824-45047053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):42, 59

               
               
               Conread position:725-949
               
               
               Cow position:chr16:55613517-55613293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:725-950
               
               
               Cow position:chr16:13996208-13995987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:725-951
               
               
               Cow position:chr16:56615519-56615292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):23, 100

               
               
               Conread position:725-957
               
               
               Cow position:chr16:24895273-24895505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):83, 128

               
               
               Conread position:725-958
               
               
               Cow position:chr16:18573067-18572839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:726-929
               
               
               Cow position:chr16:7812678-7812881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:726-937
               
               
               Cow position:chr16:35297394-35297598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):22, 87

               
               
               Conread position:726-941
               
               
               Cow position:chr16:50286501-50286713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:726-949
               
               
               Cow position:chr16:11003577-11003354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):115, 127

               
               
               Conread position:726-951
               
               
               Cow position:chr16:14376770-14376991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:726-959
               
               
               Cow position:chr16:5382166-5382403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):48, 222

               
               
               Conread position:726-959
               
               
               Cow position:chr16:18256199-18255963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:729-941
               
               
               Cow position:chr16:12324446-12324654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:729-949
               
               
               Cow position:chr16:8090541-8090321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:729-951
               
               
               Cow position:chr16:31484671-31484457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):39, 110

               
               
               Conread position:729-959
               
               
               Cow position:chr16:258291-258067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:731-949
               
               
               Cow position:chr16:10122509-10122289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:732-944
               
               
               Cow position:chr16:27051039-27051251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:734-949
               
               
               Cow position:chr16:30908951-30908740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):206, 118

               
               
               Conread position:738-929
               
               
               Cow position:chr16:16025436-16025632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:738-941
               
               
               Cow position:chr16:15714109-15714312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:738-949
               
               
               Cow position:chr16:10249819-10249608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:738-959
               
               
               Cow position:chr16:22776422-22776201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):90, 81

               
               
               Conread position:741-949
               
               
               Cow position:chr16:25369389-25369597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:741-950
               
               
               Cow position:chr16:28199032-28199239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):159, 32

               
               
               Conread position:741-951
               
               
               Cow position:chr16:3032714-3032504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:741-955
               
               
               Cow position:chr16:7928382-7928165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):201, 0

               
               
               Conread position:741-959
               
               
               Cow position:chr16:30211457-30211670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):201, 121

               
               
               Conread position:742-929
               
               
               Cow position:chr16:32512302-32512115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:742-951
               
               
               Cow position:chr16:12091659-12091442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:742-959
               
               
               Cow position:chr16:45193805-45193589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):196, 113

               
               
               Conread position:744-951
               
               
               Cow position:chr16:8469683-8469890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:745-929
               
               
               Cow position:chr16:34205057-34204877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:746-949
               
               
               Cow position:chr16:22972765-22972562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):78, 27

               
               
               Conread position:746-950
               
               
               Cow position:chr16:44144396-44144600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:747-933
               
               
               Cow position:chr16:4507705-4507883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:747-945
               
               
               Cow position:chr16:28979841-28980036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):87, 104

               
               
               Conread position:748-958
               
               
               Cow position:chr16:22323800-22323589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):186, 27

               
               
               Conread position:754-958
               
               
               Cow position:chr16:12251036-12251240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):14, 31

               
               
               Conread position:757-941
               
               
               Cow position:chr16:53451724-53451905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):164, 97

               
               
               Conread position:757-949
               
               
               Cow position:chr16:11365041-11364849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:758-945
               
               
               Cow position:chr16:9987048-9986852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:763-960
               
               
               Cow position:chr16:42107656-42107847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:764-940
               
               
               Cow position:chr16:23515742-23515567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):12, 90

               
               
               Conread position:773-921
               
               
               Cow position:chr16:43866813-43866666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:773-934
               
               
               Cow position:chr16:15949473-15949315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:773-941
               
               
               Cow position:chr16:9097058-9097226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:773-941
               
               
               Cow position:chr16:43758611-43758446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:773-941
               
               
               Cow position:chr16:50569298-50569460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:773-943
               
               
               Cow position:chr16:12458049-12457881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):167, 12

               
               
               Conread position:773-949
               
               
               Cow position:chr16:25419219-25419043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:773-950
               
               
               Cow position:chr16:33073846-33073677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:773-951
               
               
               Cow position:chr16:12077452-12077271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):83, 138

               
               
               Conread position:773-951
               
               
               Cow position:chr16:33290419-33290597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:773-951
               
               
               Cow position:chr16:45278571-45278748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:773-957
               
               
               Cow position:chr16:8810059-8809879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):167, 84

               
               
               Conread position:773-957
               
               
               Cow position:chr16:30646547-30646727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):176, 79

               
               
               Conread position:773-959
               
               
               Cow position:chr16:14343614-14343799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):151, 160

               
               
               Conread position:774-927
               
               
               Cow position:chr16:11654078-11654230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:774-927
               
               
               Cow position:chr16:29060413-29060570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:774-937
               
               
               Cow position:chr16:31011363-31011524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):127, 80

               
               
               Conread position:774-937
               
               
               Cow position:chr16:51143835-51143995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:774-941
               
               
               Cow position:chr16:24202831-24202661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:774-941
               
               
               Cow position:chr16:49734110-49733945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:774-945
               
               
               Cow position:chr16:8288911-8288747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:774-948
               
               
               Cow position:chr16:23811156-23811337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):126, 136

               
               
               Conread position:774-948
               
               
               Cow position:chr16:28233269-28233098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:774-951
               
               
               Cow position:chr16:52325563-52325386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:774-955
               
               
               Cow position:chr16:5396781-5396600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):163, 95

               
               
               Conread position:774-955
               
               
               Cow position:chr16:18429623-18429803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):177, 83

               
               
               Conread position:774-958
               
               
               Cow position:chr16:11775958-11775778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):165, 76

               
               
               Conread position:774-959
               
               
               Cow position:chr16:27327089-27326905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):180, 0

               
               
               Conread position:774-959
               
               
               Cow position:chr16:56912651-56912470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):78, 9

               
               
               Conread position:775-941
               
               
               Cow position:chr16:3049117-3048952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:775-941
               
               
               Cow position:chr16:4277517-4277352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:775-941
               
               
               Cow position:chr16:24674641-24674473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):82, 71

               
               
               Conread position:775-948
               
               
               Cow position:chr16:19282042-19282215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):165, 111

               
               
               Conread position:775-949
               
               
               Cow position:chr16:10032899-10033073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:775-951
               
               
               Cow position:chr16:17665690-17665865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:775-951
               
               
               Cow position:chr16:20614535-20614706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):79, 35

               
               
               Conread position:775-951
               
               
               Cow position:chr16:24672826-24672650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):85, 53

               
               
               Conread position:775-951
               
               
               Cow position:chr16:29311560-29311738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:775-951
               
               
               Cow position:chr16:33302221-33302395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:775-955
               
               
               Cow position:chr16:4615094-4615274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:775-958
               
               
               Cow position:chr16:51531375-51531193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):148, 0

               
               
               Conread position:775-960
               
               
               Cow position:chr16:17617326-17617142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):157, 0

               
               
               Conread position:776-942
               
               
               Cow position:chr16:48130357-48130195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:780-938
               
               
               Cow position:chr16:46184199-46184358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:780-954
               
               
               Cow position:chr16:3938969-3938799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):54, 67

               
               
               Conread position:780-960
               
               
               Cow position:chr16:10011811-10011629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:781-951
               
               
               Cow position:chr16:40029841-40029675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:782-944
               
               
               Cow position:chr16:21442567-21442406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):72, 37

               
               
               Conread position:782-944
               
               
               Cow position:chr16:47274683-47274521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:782-950
               
               
               Cow position:chr16:336544-336376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):59, 71

               
               
               Conread position:782-950
               
               
               Cow position:chr16:56614564-56614726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:782-958
               
               
               Cow position:chr16:11467644-11467819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):171, 0

               
               
               Conread position:782-959
               
               
               Cow position:chr16:16542893-16543072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):49, 44

               
               
               Conread position:782-959
               
               
               Cow position:chr16:38581046-38581226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):157, 0

               
               
               Conread position:782-960
               
               
               Cow position:chr16:21044340-21044518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-948
               
               
               Cow position:chr16:42992261-42992427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):157, 0

               
               
               Conread position:784-940
               
               
               Cow position:chr16:51393345-51393188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):81, 53

               
               
               Conread position:784-959
               
               
               Cow position:chr16:27117350-27117528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):69, 63

               
               
               Conread position:787-951
               
               
               Cow position:chr16:8083881-8083717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):74, 94

               
               
               Conread position:790-941
               
               
               Cow position:chr16:9126862-9127005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:793-958
               
               
               Cow position:chr16:30055047-30054884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:796-960
               
               
               Cow position:chr16:41095787-41095948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:797-949
               
               
               Cow position:chr16:23033886-23034036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):81, 55

               
               
               Conread position:798-941
               
               
               Cow position:chr16:51216986-51216845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:801-951
               
               
               Cow position:chr16:1856664-1856814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:802-960
               
               
               Cow position:chr16:25610087-25610244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):23, 36

               
               
               Conread position:807-941
               
               
               Cow position:chr16:48875843-48875703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:550-941
               
               
               Cow position:chr17:24750772-24751152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:273
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):7, 38

               
               
               Conread position:551-870
               
               
               Cow position:chr17:1410378-1410065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):172, 6

               
               
               Conread position:557-935
               
               
               Cow position:chr17:11362036-11362410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:268
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):36, 111

               
               
               Conread position:561-948
               
               
               Cow position:chr17:22135578-22135957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):58, 31

               
               
               Conread position:562-913
               
               
               Cow position:chr17:34079238-34078896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:248
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):13, 7

               
               
               Conread position:562-938
               
               
               Cow position:chr17:24928339-24928715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:257
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):13, 7

               
               
               Conread position:566-765
               
               
               Cow position:chr17:15333843-15333643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):27, 59

               
               
               Conread position:566-816
               
               
               Cow position:chr17:923746-923997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):53, 87

               
               
               Conread position:566-817
               
               
               Cow position:chr17:21628350-21628597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):58, 22

               
               
               Conread position:566-867
               
               
               Cow position:chr17:20126481-20126764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):31, 62

               
               
               Conread position:566-958
               
               
               Cow position:chr17:27058685-27058292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:262
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):28, 44

               
               
               Conread position:566-959
               
               
               Cow position:chr17:27795515-27795913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 106

               
               
               Conread position:569-937
               
               
               Cow position:chr17:40741518-40741890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 141

               
               
               Conread position:571-842
               
               
               Cow position:chr17:8690567-8690308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):22, 138

               
               
               Conread position:572-941
               
               
               Cow position:chr17:17410165-17410540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 141

               
               
               Conread position:573-925
               
               
               Cow position:chr17:25594826-25594464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:252
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):19, 40

               
               
               Conread position:573-941
               
               
               Cow position:chr17:20335540-20335886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:246
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):9, 25

               
               
               Conread position:574-748
               
               
               Cow position:chr17:21312933-21312759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):19, 52

               
               
               Conread position:574-766
               
               
               Cow position:chr17:26183094-26183296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):19, 135

               
               
               Conread position:574-787
               
               
               Cow position:chr17:484475-484687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):148, 50

               
               
               Conread position:574-792
               
               
               Cow position:chr17:7648092-7648306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):88, 22

               
               
               Conread position:574-854
               
               
               Cow position:chr17:37480117-37479846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):19, 100

               
               
               Conread position:574-896
               
               
               Cow position:chr17:18495639-18495324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):133, 11

               
               
               Conread position:574-940
               
               
               Cow position:chr17:22775255-22775609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:253
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):52, 29

               
               
               Conread position:574-941
               
               
               Cow position:chr17:18201637-18202001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:250
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):13, 88

               
               
               Conread position:574-941
               
               
               Cow position:chr17:24004261-24004613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:240
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):19, 50

               
               
               Conread position:575-951
               
               
               Cow position:chr17:36203617-36203230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:256
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):18, 222

               
               
               Conread position:576-817
               
               
               Cow position:chr17:8279825-8279589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):67, 14

               
               
               Conread position:576-838
               
               
               Cow position:chr17:36500689-36500942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):98, 15

               
               
               Conread position:576-935
               
               
               Cow position:chr17:18419560-18419921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:245
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):45, 15

               
               
               Conread position:576-935
               
               
               Cow position:chr17:37699475-37699106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 125

               
               
               Conread position:576-941
               
               
               Cow position:chr17:1562890-1562551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:252
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):253, 48

               
               
               Conread position:576-941
               
               
               Cow position:chr17:20093247-20092889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:258
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):121, 40

               
               
               Conread position:576-941
               
               
               Cow position:chr17:25916780-25917126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:247
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):108, 9

               
               
               Conread position:576-941
               
               
               Cow position:chr17:32348958-32349303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 13

               
               
               Conread position:576-946
               
               
               Cow position:chr17:13244161-13243809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:250
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):17, 50

               
               
               Conread position:576-949
               
               
               Cow position:chr17:24077285-24077635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:257
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):43, 15

               
               
               Conread position:576-959
               
               
               Cow position:chr17:34860264-34860632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:258
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):101, 9

               
               
               Conread position:577-736
               
               
               Cow position:chr17:27306039-27306198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):29, 130

               
               
               Conread position:577-753
               
               
               Cow position:chr17:11921401-11921219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):15, 151

               
               
               Conread position:577-767
               
               
               Cow position:chr17:3471301-3471488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):15, 133

               
               
               Conread position:577-807
               
               
               Cow position:chr17:14060895-14060665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):15, 132

               
               
               Conread position:577-808
               
               
               Cow position:chr17:32651497-32651725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):15, 129

               
               
               Conread position:577-812
               
               
               Cow position:chr17:28539910-28540142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):15, 132

               
               
               Conread position:577-848
               
               
               Cow position:chr17:9565190-9565450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):15, 94

               
               
               Conread position:577-855
               
               
               Cow position:chr17:27048040-27048312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):9, 70

               
               
               Conread position:577-880
               
               
               Cow position:chr17:9911646-9911939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):15, 47

               
               
               Conread position:577-938
               
               
               Cow position:chr17:21115069-21114718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 48

               
               
               Conread position:577-940
               
               
               Cow position:chr17:11962668-11962295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:255
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):15, 91

               
               
               Conread position:577-940
               
               
               Cow position:chr17:32279026-32278665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 50

               
               
               Conread position:577-940
               
               
               Cow position:chr17:32280546-32280907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 50

               
               
               Conread position:577-941
               
               
               Cow position:chr17:7142745-7143097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:251
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):15, 95

               
               
               Conread position:577-941
               
               
               Cow position:chr17:11281226-11280851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:266
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):15, 70

               
               
               Conread position:577-941
               
               
               Cow position:chr17:12289534-12289170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 49

               
               
               Conread position:577-941
               
               
               Cow position:chr17:20884404-20884765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 48

               
               
               Conread position:577-941
               
               
               Cow position:chr17:40331646-40332019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:262
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):15, 47

               
               
               Conread position:577-951
               
               
               Cow position:chr17:30713230-30713596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:254
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):9, 47

               
               
               Conread position:579-752
               
               
               Cow position:chr17:1353277-1353451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):30, 116

               
               
               Conread position:579-903
               
               
               Cow position:chr17:30665153-30665474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 125

               
               
               Conread position:579-949
               
               
               Cow position:chr17:29472356-29472705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 9

               
               
               Conread position:579-959
               
               
               Cow position:chr17:36791019-36791380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:268
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):79, 44

               
               
               Conread position:580-949
               
               
               Cow position:chr17:45079450-45079803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:241
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):18, 129

               
               
               Conread position:581-716
               
               
               Cow position:chr17:21697621-21697758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:581-824
               
               
               Cow position:chr17:3503467-3503707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):11, 37

               
               
               Conread position:581-852
               
               
               Cow position:chr17:979271-979013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):11, 127

               
               
               Conread position:581-897
               
               
               Cow position:chr17:18109201-18108890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 115

               
               
               Conread position:581-918
               
               
               Cow position:chr17:18473065-18473380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:231
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:581-939
               
               
               Cow position:chr17:21414950-21414592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:245
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):8, 126

               
               
               Conread position:581-939
               
               
               Cow position:chr17:21437433-21437075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:243
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):8, 126

               
               
               Conread position:581-941
               
               
               Cow position:chr17:34948524-34948877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):38, 15

               
               
               Conread position:581-960
               
               
               Cow position:chr17:20800700-20801073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:257
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):16, 125

               
               
               Conread position:582-700
               
               
               Cow position:chr17:20839675-20839556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:95
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:584-875
               
               
               Cow position:chr17:7136871-7137164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:209
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):121, 101

               
               
               Conread position:584-945
               
               
               Cow position:chr17:11397559-11397911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:253
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):146, 70

               
               
               Conread position:585-748
               
               
               Cow position:chr17:27679350-27679187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):38, 102

               
               
               Conread position:585-752
               
               
               Cow position:chr17:25122518-25122354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):63, 100

               
               
               Conread position:585-753
               
               
               Cow position:chr17:30734402-30734239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:585-761
               
               
               Cow position:chr17:38363095-38362922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):89, 11

               
               
               Conread position:585-937
               
               
               Cow position:chr17:1040636-1040964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):145, 38

               
               
               Conread position:585-941
               
               
               Cow position:chr17:8837059-8836711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:242
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):136, 38

               
               
               Conread position:585-941
               
               
               Cow position:chr17:20848416-20848768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:248
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):127, 19

               
               
               Conread position:585-941
               
               
               Cow position:chr17:22032800-22032448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):200, 40

               
               
               Conread position:585-951
               
               
               Cow position:chr17:4106096-4105743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:251
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):287, 38

               
               
               Conread position:585-951
               
               
               Cow position:chr17:4121832-4121478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:253
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):276, 38

               
               
               Conread position:585-952
               
               
               Cow position:chr17:27274452-27274821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):85, 113

               
               
               Conread position:585-958
               
               
               Cow position:chr17:11215339-11214978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 59

               
               
               Conread position:586-872
               
               
               Cow position:chr17:21755547-21755260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):41, 130

               
               
               Conread position:586-875
               
               
               Cow position:chr17:39715050-39715334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):136, 21

               
               
               Conread position:586-941
               
               
               Cow position:chr17:6423652-6423994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 37

               
               
               Conread position:587-750
               
               
               Cow position:chr17:2839800-2839961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):129, 37

               
               
               Conread position:589-937
               
               
               Cow position:chr17:11101905-11101582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:589-944
               
               
               Cow position:chr17:36265350-36265003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):85, 53

               
               
               Conread position:590-875
               
               
               Cow position:chr17:15340857-15340575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):107, 33

               
               
               Conread position:590-941
               
               
               Cow position:chr17:25514227-25513878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):259, 7

               
               
               Conread position:591-700
               
               
               Cow position:chr17:1295675-1295565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:591-719
               
               
               Cow position:chr17:5896014-5895890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:591-747
               
               
               Cow position:chr17:4436335-4436181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):119, 16

               
               
               Conread position:591-752
               
               
               Cow position:chr17:6624154-6624310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):131, 79

               
               
               Conread position:591-752
               
               
               Cow position:chr17:13143794-13143634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):110, 33

               
               
               Conread position:591-753
               
               
               Cow position:chr17:11056475-11056314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):128, 115

               
               
               Conread position:591-759
               
               
               Cow position:chr17:1311244-1311411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):35, 105

               
               
               Conread position:591-761
               
               
               Cow position:chr17:34207922-34207752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-764
               
               
               Cow position:chr17:9778142-9778309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):35, 112

               
               
               Conread position:591-766
               
               
               Cow position:chr17:17266998-17266823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):121, 113

               
               
               Conread position:591-766
               
               
               Cow position:chr17:41290124-41289954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:591-801
               
               
               Cow position:chr17:12059198-12058990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):111, 33

               
               
               Conread position:591-809
               
               
               Cow position:chr17:31231215-31231012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):65, 28

               
               
               Conread position:591-812
               
               
               Cow position:chr17:3781941-3782157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):64, 32

               
               
               Conread position:591-816
               
               
               Cow position:chr17:14762223-14762004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:591-820
               
               
               Cow position:chr17:553064-552848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):32, 109

               
               
               Conread position:591-829
               
               
               Cow position:chr17:38646956-38647192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):139, 32

               
               
               Conread position:591-842
               
               
               Cow position:chr17:18592340-18592586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):106, 32

               
               
               Conread position:591-848
               
               
               Cow position:chr17:6848701-6848944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):15, 35

               
               
               Conread position:591-848
               
               
               Cow position:chr17:12591063-12591324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-857
               
               
               Cow position:chr17:21758250-21757982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):27, 113

               
               
               Conread position:591-860
               
               
               Cow position:chr17:33658174-33657907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):108, 32

               
               
               Conread position:591-861
               
               
               Cow position:chr17:34595840-34596101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):177, 33

               
               
               Conread position:591-866
               
               
               Cow position:chr17:29157313-29157584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):121, 32

               
               
               Conread position:591-866
               
               
               Cow position:chr17:37482177-37481904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):78, 110

               
               
               Conread position:591-870
               
               
               Cow position:chr17:21335798-21335521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:201
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):115, 32

               
               
               Conread position:591-875
               
               
               Cow position:chr17:8079213-8079489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:591-875
               
               
               Cow position:chr17:9117543-9117821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-875
               
               
               Cow position:chr17:20874286-20874572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):30, 124

               
               
               Conread position:591-875
               
               
               Cow position:chr17:24553904-24554170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):38, 28

               
               
               Conread position:591-876
               
               
               Cow position:chr17:34751509-34751229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:591-878
               
               
               Cow position:chr17:8544202-8544479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):32, 100

               
               
               Conread position:591-879
               
               
               Cow position:chr17:33411126-33410829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):36, 140

               
               
               Conread position:591-896
               
               
               Cow position:chr17:7697953-7698249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):257, 48

               
               
               Conread position:591-903
               
               
               Cow position:chr17:25097359-25097655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:221
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):133, 33

               
               
               Conread position:591-903
               
               
               Cow position:chr17:45881800-45882106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):104, 22

               
               
               Conread position:591-921
               
               
               Cow position:chr17:24752417-24752101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):131, 52

               
               
               Conread position:591-927
               
               
               Cow position:chr17:1113781-1114124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:235
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):28, 109

               
               
               Conread position:591-927
               
               
               Cow position:chr17:6329008-6329338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 112

               
               
               Conread position:591-928
               
               
               Cow position:chr17:23101311-23100995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):17, 35

               
               
               Conread position:591-928
               
               
               Cow position:chr17:29080448-29080764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):139, 33

               
               
               Conread position:591-929
               
               
               Cow position:chr17:31701336-31701663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):35, 106

               
               
               Conread position:591-930
               
               
               Cow position:chr17:5514655-5514986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):239, 107

               
               
               Conread position:591-930
               
               
               Cow position:chr17:18860828-18860515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:240
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):13, 116

               
               
               Conread position:591-933
               
               
               Cow position:chr17:7132555-7132192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:256
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):109, 262

               
               
               Conread position:591-936
               
               
               Cow position:chr17:3577438-3577762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:227
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-937
               
               
               Cow position:chr17:1783709-1783390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:247
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):35, 67

               
               
               Conread position:591-937
               
               
               Cow position:chr17:20993144-20992802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 115

               
               
               Conread position:591-937
               
               
               Cow position:chr17:25901093-25901444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 32

               
               
               Conread position:591-937
               
               
               Cow position:chr17:29715290-29714978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):123, 32

               
               
               Conread position:591-937
               
               
               Cow position:chr17:31037484-31037141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 32

               
               
               Conread position:591-937
               
               
               Cow position:chr17:31856559-31856908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 125

               
               
               Conread position:591-940
               
               
               Cow position:chr17:22564077-22564417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):104, 181

               
               
               Conread position:591-941
               
               
               Cow position:chr17:11832223-11831878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:237
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):124, 79

               
               
               Conread position:591-941
               
               
               Cow position:chr17:14003714-14004064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 33

               
               
               Conread position:591-941
               
               
               Cow position:chr17:14026020-14025666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 118

               
               
               Conread position:591-941
               
               
               Cow position:chr17:16446536-16446186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:251
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):32, 56

               
               
               Conread position:591-941
               
               
               Cow position:chr17:20022621-20022274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:244
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):16, 33

               
               
               Conread position:591-941
               
               
               Cow position:chr17:20780407-20780765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):131, 33

               
               
               Conread position:591-941
               
               
               Cow position:chr17:21003932-21003591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr17:21434829-21434488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):151, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr17:24587518-24587863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr17:27184046-27183702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 78

               
               
               Conread position:591-941
               
               
               Cow position:chr17:32419218-32418877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 39

               
               
               Conread position:591-941
               
               
               Cow position:chr17:32471894-32471550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:246
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):38, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr17:33933852-33933508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-944
               
               
               Cow position:chr17:15304091-15303730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):28, 54

               
               
               Conread position:591-945
               
               
               Cow position:chr17:10459041-10458690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:244
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):131, 34

               
               
               Conread position:591-945
               
               
               Cow position:chr17:44147076-44146729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:231
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):131, 104

               
               
               Conread position:591-948
               
               
               Cow position:chr17:6318961-6318621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:248
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):131, 28

               
               
               Conread position:591-948
               
               
               Cow position:chr17:23063608-23063969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:246
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):35, 108

               
               
               Conread position:591-948
               
               
               Cow position:chr17:26233930-26233580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:245
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):35, 54

               
               
               Conread position:591-948
               
               
               Cow position:chr17:32027562-32027200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 126

               
               
               Conread position:591-949
               
               
               Cow position:chr17:18490431-18490781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:246
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):35, 107

               
               
               Conread position:591-949
               
               
               Cow position:chr17:25875305-25875643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:249
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):29, 58

               
               
               Conread position:591-949
               
               
               Cow position:chr17:26000013-26000367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 32

               
               
               Conread position:591-950
               
               
               Cow position:chr17:3467663-3468000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):190, 32

               
               
               Conread position:591-950
               
               
               Cow position:chr17:11664692-11664326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 32

               
               
               Conread position:591-950
               
               
               Cow position:chr17:15188181-15187823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:235
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):83, 33

               
               
               Conread position:591-950
               
               
               Cow position:chr17:25608606-25608267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):355, 118

               
               
               Conread position:591-951
               
               
               Cow position:chr17:10528841-10528483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:248
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):36, 240

               
               
               Conread position:591-951
               
               
               Cow position:chr17:15664564-15664927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:251
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):28, 261

               
               
               Conread position:591-951
               
               
               Cow position:chr17:17059329-17059668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):132, 26

               
               
               Conread position:591-951
               
               
               Cow position:chr17:24559189-24559544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 104

               
               
               Conread position:591-951
               
               
               Cow position:chr17:24973848-24974193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):216, 34

               
               
               Conread position:591-951
               
               
               Cow position:chr17:25611985-25612337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-951
               
               
               Cow position:chr17:25815500-25815846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 35

               
               
               Conread position:591-951
               
               
               Cow position:chr17:31481140-31480780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:260
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):160, 93

               
               
               Conread position:591-951
               
               
               Cow position:chr17:40673282-40673623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 76

               
               
               Conread position:591-951
               
               
               Cow position:chr17:40771731-40772080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 120

               
               
               Conread position:591-952
               
               
               Cow position:chr17:9853886-9854233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:251
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):261, 33

               
               
               Conread position:591-955
               
               
               Cow position:chr17:11278137-11277772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 122

               
               
               Conread position:591-956
               
               
               Cow position:chr17:12536572-12536224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:255
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):117, 32

               
               
               Conread position:591-958
               
               
               Cow position:chr17:18146079-18146449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 105

               
               
               Conread position:591-958
               
               
               Cow position:chr17:28468032-28468380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:253
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):279, 33

               
               
               Conread position:591-958
               
               
               Cow position:chr17:32989378-32989730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-958
               
               
               Cow position:chr17:32993722-32993369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-958
               
               
               Cow position:chr17:36454870-36454521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:248
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):32, 52

               
               
               Conread position:591-959
               
               
               Cow position:chr17:20932225-20932587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 119

               
               
               Conread position:591-959
               
               
               Cow position:chr17:26631916-26631549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):133, 90

               
               
               Conread position:591-960
               
               
               Cow position:chr17:9966132-9965762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:253
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):126, 106

               
               
               Conread position:591-960
               
               
               Cow position:chr17:12325851-12325511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:244
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:591-960
               
               
               Cow position:chr17:12946468-12946102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:265
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):30, 83

               
               
               Conread position:591-960
               
               
               Cow position:chr17:14033744-14033386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:252
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):74, 33

               
               
               Conread position:591-960
               
               
               Cow position:chr17:18720557-18720195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 122

               
               
               Conread position:591-960
               
               
               Cow position:chr17:21973237-21972868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 32

               
               
               Conread position:592-712
               
               
               Cow position:chr17:9936140-9936022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):109, 44

               
               
               Conread position:592-753
               
               
               Cow position:chr17:242533-242693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):17, 33

               
               
               Conread position:592-761
               
               
               Cow position:chr17:267691-267522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):27, 91

               
               
               Conread position:592-767
               
               
               Cow position:chr17:10510761-10510588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):127, 31

               
               
               Conread position:592-832
               
               
               Cow position:chr17:23563892-23563661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):130, 13

               
               
               Conread position:592-842
               
               
               Cow position:chr17:21243886-21243646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):130, 31

               
               
               Conread position:592-848
               
               
               Cow position:chr17:10561527-10561784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):106, 36

               
               
               Conread position:592-848
               
               
               Cow position:chr17:30718522-30718268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):130, 91

               
               
               Conread position:592-857
               
               
               Cow position:chr17:39736078-39736333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:592-872
               
               
               Cow position:chr17:24821763-24822035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):142, 31

               
               
               Conread position:592-874
               
               
               Cow position:chr17:32273789-32273511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):134, 31

               
               
               Conread position:592-937
               
               
               Cow position:chr17:26514616-26514951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):140, 79

               
               
               Conread position:592-941
               
               
               Cow position:chr17:5898627-5898284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:237
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):138, 51

               
               
               Conread position:592-944
               
               
               Cow position:chr17:12108702-12109051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:239
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):131, 114

               
               
               Conread position:592-944
               
               
               Cow position:chr17:13940423-13940075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):37, 92

               
               
               Conread position:592-949
               
               
               Cow position:chr17:34650343-34650711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):35, 243

               
               
               Conread position:592-950
               
               
               Cow position:chr17:11381821-11381476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:243
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):34, 68

               
               
               Conread position:592-950
               
               
               Cow position:chr17:33275850-33275509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:239
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):101, 51

               
               
               Conread position:592-951
               
               
               Cow position:chr17:7803277-7802922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 43

               
               
               Conread position:592-952
               
               
               Cow position:chr17:7810837-7810495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:258
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):256, 31

               
               
               Conread position:592-958
               
               
               Cow position:chr17:17222241-17222601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 92

               
               
               Conread position:592-959
               
               
               Cow position:chr17:30529644-30529283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 78

               
               
               Conread position:592-960
               
               
               Cow position:chr17:38614853-38615220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 107

               
               
               Conread position:593-799
               
               
               Cow position:chr17:7654557-7654351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):109, 33

               
               
               Conread position:593-820
               
               
               Cow position:chr17:23798179-23798403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):91, 14

               
               
               Conread position:593-855
               
               
               Cow position:chr17:20990296-20990033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):120, 30

               
               
               Conread position:593-855
               
               
               Cow position:chr17:21495274-21495528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):27, 19

               
               
               Conread position:593-855
               
               
               Cow position:chr17:39857291-39857542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):129, 87

               
               
               Conread position:593-857
               
               
               Cow position:chr17:25502008-25502269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):106, 30

               
               
               Conread position:593-901
               
               
               Cow position:chr17:35339017-35338713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):249, 30

               
               
               Conread position:593-935
               
               
               Cow position:chr17:1063086-1063403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):130, 11

               
               
               Conread position:593-937
               
               
               Cow position:chr17:27429480-27429792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):109, 30

               
               
               Conread position:593-938
               
               
               Cow position:chr17:10446818-10447150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):30, 52

               
               
               Conread position:593-939
               
               
               Cow position:chr17:33288756-33288420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):137, 31

               
               
               Conread position:593-941
               
               
               Cow position:chr17:908644-908979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:593-941
               
               
               Cow position:chr17:9056804-9056459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):28, 8

               
               
               Conread position:593-946
               
               
               Cow position:chr17:4786596-4786235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):129, 14

               
               
               Conread position:593-948
               
               
               Cow position:chr17:24490423-24490788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):37, 330

               
               
               Conread position:593-949
               
               
               Cow position:chr17:11618482-11618836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 14

               
               
               Conread position:593-949
               
               
               Cow position:chr17:17179927-17180293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:249
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):50, 136

               
               
               Conread position:593-949
               
               
               Cow position:chr17:21959789-21959435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 109

               
               
               Conread position:593-949
               
               
               Cow position:chr17:24149079-24149437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 105

               
               
               Conread position:593-951
               
               
               Cow position:chr17:12306494-12306152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:252
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):132, 53

               
               
               Conread position:593-951
               
               
               Cow position:chr17:21325231-21325593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 30

               
               
               Conread position:593-955
               
               
               Cow position:chr17:25616157-25616500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:253
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):187, 30

               
               
               Conread position:593-956
               
               
               Cow position:chr17:20157509-20157863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 30

               
               
               Conread position:593-958
               
               
               Cow position:chr17:15102986-15102632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:250
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):130, 30

               
               
               Conread position:594-753
               
               
               Cow position:chr17:20305947-20306105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):131, 112

               
               
               Conread position:594-807
               
               
               Cow position:chr17:21917977-21917764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):32, 103

               
               
               Conread position:594-855
               
               
               Cow position:chr17:24580397-24580139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):128, 30

               
               
               Conread position:594-876
               
               
               Cow position:chr17:12880495-12880772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):9, 43

               
               
               Conread position:594-941
               
               
               Cow position:chr17:24883667-24883330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:594-944
               
               
               Cow position:chr17:14652881-14652541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 31

               
               
               Conread position:594-948
               
               
               Cow position:chr17:21738980-21738618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 116

               
               
               Conread position:594-951
               
               
               Cow position:chr17:1634590-1634246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:246
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):129, 29

               
               
               Conread position:594-951
               
               
               Cow position:chr17:13922378-13922732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 29

               
               
               Conread position:595-743
               
               
               Cow position:chr17:1505211-1505358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):26, 74

               
               
               Conread position:595-941
               
               
               Cow position:chr17:11215991-11215653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:244
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):104, 28

               
               
               Conread position:595-941
               
               
               Cow position:chr17:35573663-35573987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:229
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):83, 28

               
               
               Conread position:595-945
               
               
               Cow position:chr17:36331065-36330723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:250
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):42, 28

               
               
               Conread position:595-949
               
               
               Cow position:chr17:1035700-1035346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 109

               
               
               Conread position:595-952
               
               
               Cow position:chr17:16371155-16371515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:251
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):127, 107

               
               
               Conread position:596-753
               
               
               Cow position:chr17:42347323-42347169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):126, 28

               
               
               Conread position:596-814
               
               
               Cow position:chr17:1275425-1275639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):110, 94

               
               
               Conread position:596-847
               
               
               Cow position:chr17:26764918-26765172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):63, 27

               
               
               Conread position:596-860
               
               
               Cow position:chr17:5900268-5900531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):90, 27

               
               
               Conread position:596-885
               
               
               Cow position:chr17:9746416-9746697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:596-937
               
               
               Cow position:chr17:11912596-11912269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:232
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):110, 27

               
               
               Conread position:596-941
               
               
               Cow position:chr17:3353782-3354109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):111, 106

               
               
               Conread position:596-941
               
               
               Cow position:chr17:24824150-24824486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:237
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):264, 27

               
               
               Conread position:596-941
               
               
               Cow position:chr17:25128447-25128114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 28

               
               
               Conread position:596-944
               
               
               Cow position:chr17:20033011-20032665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:228
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):80, 120

               
               
               Conread position:596-950
               
               
               Cow position:chr17:17683002-17682665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:242
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):74, 107

               
               
               Conread position:596-951
               
               
               Cow position:chr17:21293143-21292788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:257
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):23, 77

               
               
               Conread position:597-866
               
               
               Cow position:chr17:40289096-40288833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):26, 90

               
               
               Conread position:597-937
               
               
               Cow position:chr17:12929637-12929292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):23, 110

               
               
               Conread position:597-941
               
               
               Cow position:chr17:33271786-33271430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:254
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):20, 117

               
               
               Conread position:597-958
               
               
               Cow position:chr17:21599779-21599424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:238
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):244, 103

               
               
               Conread position:598-960
               
               
               Cow position:chr17:25117793-25118148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):349, 109

               
               
               Conread position:599-933
               
               
               Cow position:chr17:32138511-32138184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:243
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):131, 24

               
               
               Conread position:599-949
               
               
               Cow position:chr17:3202498-3202163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):107, 50

               
               
               Conread position:599-959
               
               
               Cow position:chr17:21743842-21744195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:245
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):75, 25

               
               
               Conread position:600-875
               
               
               Cow position:chr17:27203139-27202869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):256, 117

               
               
               Conread position:600-878
               
               
               Cow position:chr17:5255467-5255187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):154, 95

               
               
               Conread position:600-879
               
               
               Cow position:chr17:23517037-23516762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):122, 23

               
               
               Conread position:603-952
               
               
               Cow position:chr17:21489716-21489381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:242
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):336, 103

               
               
               Conread position:604-875
               
               
               Cow position:chr17:21922713-21922460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):118, 42

               
               
               Conread position:604-927
               
               
               Cow position:chr17:39771309-39771628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):152, 22

               
               
               Conread position:605-867
               
               
               Cow position:chr17:2275384-2275639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):75, 95

               
               
               Conread position:605-937
               
               
               Cow position:chr17:5730822-5731154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):20, 75

               
               
               Conread position:605-951
               
               
               Cow position:chr17:17193405-17193742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):66, 12

               
               
               Conread position:606-955
               
               
               Cow position:chr17:25342829-25342485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):333, 103

               
               
               Conread position:607-882
               
               
               Cow position:chr17:15376521-15376774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:607-929
               
               
               Cow position:chr17:5350207-5349895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:227
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):123, 50

               
               
               Conread position:607-941
               
               
               Cow position:chr17:5280731-5280410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):116, 51

               
               
               Conread position:611-857
               
               
               Cow position:chr17:23883340-23883110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):157, 12

               
               
               Conread position:611-941
               
               
               Cow position:chr17:25189202-25189527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:234
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):12, 107

               
               
               Conread position:613-921
               
               
               Cow position:chr17:2810547-2810853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):93, 30

               
               
               Conread position:614-860
               
               
               Cow position:chr17:38832962-38833205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):108, 9

               
               
               Conread position:614-936
               
               
               Cow position:chr17:36275259-36275571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:221
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):240, 9

               
               
               Conread position:614-941
               
               
               Cow position:chr17:22127846-22128162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):94, 10

               
               
               Conread position:616-938
               
               
               Cow position:chr17:1466509-1466179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:240
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):97, 89

               
               
               Conread position:616-958
               
               
               Cow position:chr17:1469297-1469626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:238
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):106, 30

               
               
               Conread position:616-958
               
               
               Cow position:chr17:25709626-25709972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):114, 17

               
               
               Conread position:617-957
               
               
               Cow position:chr17:34791148-34790807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:234
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):11, 94

               
               
               Conread position:617-958
               
               
               Cow position:chr17:26230872-26231222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 127

               
               
               Conread position:618-936
               
               
               Cow position:chr17:29025990-29026310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):64, 96

               
               
               Conread position:618-938
               
               
               Cow position:chr17:22057100-22056778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):259, 52

               
               
               Conread position:618-948
               
               
               Cow position:chr17:14050280-14049963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:231
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:618-949
               
               
               Cow position:chr17:8598183-8597861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:619-838
               
               
               Cow position:chr17:11368927-11368710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):104, 24

               
               
               Conread position:619-929
               
               
               Cow position:chr17:10432053-10431736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):167, 87

               
               
               Conread position:619-941
               
               
               Cow position:chr17:9824592-9824907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):97, 83

               
               
               Conread position:621-951
               
               
               Cow position:chr17:36864556-36864870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):109, 62

               
               
               Conread position:624-950
               
               
               Cow position:chr17:15684441-15684752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):139, 78

               
               
               Conread position:624-958
               
               
               Cow position:chr17:11995103-11994762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):106, 73

               
               
               Conread position:625-941
               
               
               Cow position:chr17:3153642-3153328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:225
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):230, 62

               
               
               Conread position:625-955
               
               
               Cow position:chr17:21806520-21806195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:228
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):97, 29

               
               
               Conread position:625-959
               
               
               Cow position:chr17:33793093-33793412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):12, 43

               
               
               Conread position:626-949
               
               
               Cow position:chr17:27730470-27730794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):80, 69

               
               
               Conread position:628-941
               
               
               Cow position:chr17:11839648-11839963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:227
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):120, 77

               
               
               Conread position:628-959
               
               
               Cow position:chr17:36814292-36814623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 80

               
               
               Conread position:629-941
               
               
               Cow position:chr17:40638883-40639187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:220
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):204, 68

               
               
               Conread position:630-862
               
               
               Cow position:chr17:4683281-4683513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):71, 87

               
               
               Conread position:631-951
               
               
               Cow position:chr17:1025885-1025585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):162, 66

               
               
               Conread position:633-946
               
               
               Cow position:chr17:40694502-40694188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):122, 69

               
               
               Conread position:639-845
               
               
               Cow position:chr17:16158434-16158638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:639-957
               
               
               Cow position:chr17:9770454-9770762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):91, 67

               
               
               Conread position:640-935
               
               
               Cow position:chr17:30749976-30750283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):106, 281

               
               
               Conread position:650-937
               
               
               Cow position:chr17:22051638-22051355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):59, 65

               
               
               Conread position:650-937
               
               
               Cow position:chr17:37816236-37815954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):204, 68

               
               
               Conread position:650-941
               
               
               Cow position:chr17:5011803-5012081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:207
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):101, 52

               
               
               Conread position:650-941
               
               
               Cow position:chr17:26757508-26757204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:650-947
               
               
               Cow position:chr17:39606384-39606668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:650-950
               
               
               Cow position:chr17:18934211-18934505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):58, 47

               
               
               Conread position:650-950
               
               
               Cow position:chr17:25126306-25126593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):80, 56

               
               
               Conread position:650-960
               
               
               Cow position:chr17:21039518-21039813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:220
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:651-959
               
               
               Cow position:chr17:33155200-33154899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):287, 51

               
               
               Conread position:652-846
               
               
               Cow position:chr17:26730653-26730463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):72, 45

               
               
               Conread position:652-935
               
               
               Cow position:chr17:5372573-5372298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):203, 0

               
               
               Conread position:652-938
               
               
               Cow position:chr17:5288124-5288401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:193
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):22, 46

               
               
               Conread position:652-957
               
               
               Cow position:chr17:35051563-35051877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):63, 45

               
               
               Conread position:652-959
               
               
               Cow position:chr17:26513143-26513451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):54, 58

               
               
               Conread position:653-959
               
               
               Cow position:chr17:25800925-25800625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:214
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):70, 49

               
               
               Conread position:654-929
               
               
               Cow position:chr17:26789378-26789643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):53, 90

               
               
               Conread position:654-949
               
               
               Cow position:chr17:16078444-16078156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):266, 55

               
               
               Conread position:654-951
               
               
               Cow position:chr17:25466925-25467242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):25, 16

               
               
               Conread position:654-959
               
               
               Cow position:chr17:23280899-23280601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):76, 165

               
               
               Conread position:654-959
               
               
               Cow position:chr17:26448501-26448797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):31, 53

               
               
               Conread position:657-951
               
               
               Cow position:chr17:28982140-28982427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):47, 68

               
               
               Conread position:658-942
               
               
               Cow position:chr17:17044371-17044093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):65, 48

               
               
               Conread position:658-949
               
               
               Cow position:chr17:29961616-29961902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):61, 48

               
               
               Conread position:658-954
               
               
               Cow position:chr17:18818530-18818816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):283, 39

               
               
               Conread position:661-949
               
               
               Cow position:chr17:25885787-25886080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):43, 5

               
               
               Conread position:662-854
               
               
               Cow position:chr17:28814533-28814337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:663-940
               
               
               Cow position:chr17:9950697-9950417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):67, 34

               
               
               Conread position:663-941
               
               
               Cow position:chr17:32333125-32332852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:197
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:663-943
               
               
               Cow position:chr17:35149561-35149286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):79, 47

               
               
               Conread position:663-944
               
               
               Cow position:chr17:24613188-24613468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):191, 39

               
               
               Conread position:664-960
               
               
               Cow position:chr17:4264190-4264485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):37, 20

               
               
               Conread position:668-948
               
               
               Cow position:chr17:10023025-10023302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):9, 22

               
               
               Conread position:669-941
               
               
               Cow position:chr17:25473307-25473041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):94, 27

               
               
               Conread position:670-949
               
               
               Cow position:chr17:25584213-25584492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:198
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):60, 104

               
               
               Conread position:670-951
               
               
               Cow position:chr17:12959079-12959348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):39, 26

               
               
               Conread position:673-941
               
               
               Cow position:chr17:31559549-31559811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:673-950
               
               
               Cow position:chr17:40384227-40383957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):57, 37

               
               
               Conread position:673-951
               
               
               Cow position:chr17:29995461-29995186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):50, 36

               
               
               Conread position:675-949
               
               
               Cow position:chr17:7571078-7571356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:676-937
               
               
               Cow position:chr17:33164837-33164584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):27, 46

               
               
               Conread position:676-948
               
               
               Cow position:chr17:5421655-5421928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):38, 31

               
               
               Conread position:676-950
               
               
               Cow position:chr17:45296395-45296653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):47, 21

               
               
               Conread position:677-933
               
               
               Cow position:chr17:24163018-24163266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):26, 38

               
               
               Conread position:677-941
               
               
               Cow position:chr17:22189419-22189671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):53, 20

               
               
               Conread position:680-925
               
               
               Cow position:chr17:5013093-5012844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):137, 26

               
               
               Conread position:681-941
               
               
               Cow position:chr17:9932317-9932071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):41, 21

               
               
               Conread position:681-941
               
               
               Cow position:chr17:25511227-25511483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):32, 113

               
               
               Conread position:681-955
               
               
               Cow position:chr17:3388809-3389090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):42, 25

               
               
               Conread position:685-951
               
               
               Cow position:chr17:35193834-35193567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):45, 53

               
               
               Conread position:686-941
               
               
               Cow position:chr17:37341051-37340791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):22, 172

               
               
               Conread position:686-951
               
               
               Cow position:chr17:19783048-19783306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):38, 23

               
               
               Conread position:694-951
               
               
               Cow position:chr17:7959176-7959431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):22, 12

               
               
               Conread position:695-949
               
               
               Cow position:chr17:21466266-21466010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):161, 0

               
               
               Conread position:696-949
               
               
               Cow position:chr17:20834178-20834430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):14, 10

               
               
               Conread position:697-958
               
               
               Cow position:chr17:45135907-45135653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):13, 68

               
               
               Conread position:700-935
               
               
               Cow position:chr17:17772426-17772184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):16, 6

               
               
               Conread position:703-953
               
               
               Cow position:chr17:32143095-32143341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):48, 13

               
               
               Conread position:705-941
               
               
               Cow position:chr17:40355265-40355501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):25, 10

               
               
               Conread position:707-941
               
               
               Cow position:chr17:21863664-21863899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):23, 139

               
               
               Conread position:707-944
               
               
               Cow position:chr17:15354939-15355177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):23, 204

               
               
               Conread position:707-950
               
               
               Cow position:chr17:20905091-20904858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):23, 115

               
               
               Conread position:709-929
               
               
               Cow position:chr17:8986596-8986373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:709-941
               
               
               Cow position:chr17:43315276-43315050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):14, 54

               
               
               Conread position:709-951
               
               
               Cow position:chr17:1463320-1463078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:709-959
               
               
               Cow position:chr17:9509983-9509733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:190
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):21, 7

               
               
               Conread position:710-936
               
               
               Cow position:chr17:27440187-27440412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):20, 47

               
               
               Conread position:710-950
               
               
               Cow position:chr17:30169225-30168987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):14, 144

               
               
               Conread position:710-951
               
               
               Cow position:chr17:40276751-40276985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):12, 147

               
               
               Conread position:711-941
               
               
               Cow position:chr17:29084186-29084407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):12, 141

               
               
               Conread position:711-958
               
               
               Cow position:chr17:17034961-17035203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):12, 146

               
               
               Conread position:713-929
               
               
               Cow position:chr17:6004817-6005028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):17, 38

               
               
               Conread position:713-951
               
               
               Cow position:chr17:42150405-42150640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):10, 140

               
               
               Conread position:714-934
               
               
               Cow position:chr17:24862473-24862687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):16, 144

               
               
               Conread position:714-950
               
               
               Cow position:chr17:26072746-26072510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):16, 219

               
               
               Conread position:715-937
               
               
               Cow position:chr17:946373-946592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):15, 143

               
               
               Conread position:715-938
               
               
               Cow position:chr17:36431912-36432136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:715-945
               
               
               Cow position:chr17:4817544-4817774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):15, 54

               
               
               Conread position:725-949
               
               
               Cow position:chr17:37857666-37857441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):146, 0

               
               
               Conread position:726-941
               
               
               Cow position:chr17:27292429-27292214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):157, 149

               
               
               Conread position:729-949
               
               
               Cow position:chr17:13414337-13414117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):176, 180

               
               
               Conread position:729-949
               
               
               Cow position:chr17:21236557-21236773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:729-955
               
               
               Cow position:chr17:20929272-20929499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):214, 0

               
               
               Conread position:731-951
               
               
               Cow position:chr17:14024598-14024378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:732-935
               
               
               Cow position:chr17:10414532-10414727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:735-950
               
               
               Cow position:chr17:36179005-36178802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:735-959
               
               
               Cow position:chr17:21718960-21718738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):208, 114

               
               
               Conread position:738-959
               
               
               Cow position:chr17:21075811-21076031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):19, 106

               
               
               Conread position:740-938
               
               
               Cow position:chr17:37552985-37552787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):94, 85

               
               
               Conread position:740-955
               
               
               Cow position:chr17:24895115-24895335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):117, 169

               
               
               Conread position:741-937
               
               
               Cow position:chr17:5344660-5344855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):27, 33

               
               
               Conread position:741-959
               
               
               Cow position:chr17:39963920-39964135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):27, 35

               
               
               Conread position:742-941
               
               
               Cow position:chr17:26225071-26225268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:744-930
               
               
               Cow position:chr17:5027414-5027235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:744-941
               
               
               Cow position:chr17:11056115-11055927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):8, 68

               
               
               Conread position:745-941
               
               
               Cow position:chr17:10016326-10016517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:757-926
               
               
               Cow position:chr17:31754716-31754547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):113, 28

               
               
               Conread position:757-937
               
               
               Cow position:chr17:12215197-12215017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):127, 10

               
               
               Conread position:757-949
               
               
               Cow position:chr17:21181510-21181702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:757-951
               
               
               Cow position:chr17:9078162-9077963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:758-933
               
               
               Cow position:chr17:24767228-24767056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:758-937
               
               
               Cow position:chr17:7711497-7711672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:772-950
               
               
               Cow position:chr17:36943443-36943612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:773-941
               
               
               Cow position:chr17:3364666-3364829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):37, 9

               
               
               Conread position:773-948
               
               
               Cow position:chr17:6767186-6767011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):147, 171

               
               
               Conread position:773-949
               
               
               Cow position:chr17:17266060-17265882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:773-949
               
               
               Cow position:chr17:19898965-19899149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:773-959
               
               
               Cow position:chr17:18708536-18708358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):169, 84

               
               
               Conread position:773-959
               
               
               Cow position:chr17:24987281-24987460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):38, 20

               
               
               Conread position:773-960
               
               
               Cow position:chr17:5038976-5038795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):173, 77

               
               
               Conread position:773-960
               
               
               Cow position:chr17:34768382-34768194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):55, 49

               
               
               Conread position:774-928
               
               
               Cow position:chr17:28528929-28529082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:774-929
               
               
               Cow position:chr17:21777802-21777956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:774-929
               
               
               Cow position:chr17:25095557-25095714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:774-942
               
               
               Cow position:chr17:20836167-20836331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:774-946
               
               
               Cow position:chr17:21676966-21677136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):60, 97

               
               
               Conread position:774-948
               
               
               Cow position:chr17:11921089-11920916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):169, 0

               
               
               Conread position:774-951
               
               
               Cow position:chr17:5048006-5048180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:774-951
               
               
               Cow position:chr17:19471695-19471522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):166, 83

               
               
               Conread position:774-955
               
               
               Cow position:chr17:19544156-19543978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):19, 42

               
               
               Conread position:774-957
               
               
               Cow position:chr17:8663580-8663767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):69, 47

               
               
               Conread position:774-958
               
               
               Cow position:chr17:32978857-32978677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):169, 78

               
               
               Conread position:774-959
               
               
               Cow position:chr17:3387793-3387976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:775-945
               
               
               Cow position:chr17:13976634-13976465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):94, 113

               
               
               Conread position:775-945
               
               
               Cow position:chr17:37973990-37973814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:775-949
               
               
               Cow position:chr17:25702679-25702853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):164, 8

               
               
               Conread position:775-951
               
               
               Cow position:chr17:11269698-11269524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:775-951
               
               
               Cow position:chr17:41009349-41009522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:775-957
               
               
               Cow position:chr17:5762081-5761893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:775-958
               
               
               Cow position:chr17:28795906-28795721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):168, 0

               
               
               Conread position:775-959
               
               
               Cow position:chr17:6761771-6761597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:775-959
               
               
               Cow position:chr17:17782132-17782310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:775-959
               
               
               Cow position:chr17:27565636-27565817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):25, 169

               
               
               Conread position:775-959
               
               
               Cow position:chr17:32220809-32220621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):37, 73

               
               
               Conread position:775-959
               
               
               Cow position:chr17:36468114-36467930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):85, 121

               
               
               Conread position:775-960
               
               
               Cow position:chr17:9260535-9260351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):167, 94

               
               
               Conread position:779-944
               
               
               Cow position:chr17:34187957-34188122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:780-941
               
               
               Cow position:chr17:26183426-26183587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:780-950
               
               
               Cow position:chr17:42780242-42780070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):65, 43

               
               
               Conread position:780-951
               
               
               Cow position:chr17:15883753-15883925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:780-951
               
               
               Cow position:chr17:20359194-20359363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):70, 153

               
               
               Conread position:781-949
               
               
               Cow position:chr17:10222127-10221959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:781-959
               
               
               Cow position:chr17:6787019-6787197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):61, 163

               
               
               Conread position:782-949
               
               
               Cow position:chr17:17418556-17418725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:782-956
               
               
               Cow position:chr17:43323461-43323285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):156, 0

               
               
               Conread position:782-959
               
               
               Cow position:chr17:35921973-35922152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:783-954
               
               
               Cow position:chr17:1081289-1081461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:784-951
               
               
               Cow position:chr17:14668588-14668756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):156, 0

               
               
               Conread position:784-955
               
               
               Cow position:chr17:24116696-24116869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):90, 11

               
               
               Conread position:785-939
               
               
               Cow position:chr17:15334409-15334255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):76, 69

               
               
               Conread position:787-949
               
               
               Cow position:chr17:31736417-31736254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:790-951
               
               
               Cow position:chr17:10037499-10037660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:790-958
               
               
               Cow position:chr17:30494068-30493900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:792-951
               
               
               Cow position:chr17:7864918-7865075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:792-951
               
               
               Cow position:chr17:18673946-18673787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:793-951
               
               
               Cow position:chr17:8809410-8809258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:796-956
               
               
               Cow position:chr17:20783096-20782943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:800-951
               
               
               Cow position:chr17:12249134-12248983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:537-736
               
               
               Cow position:chr18:4316084-4316276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):190, 21

               
               
               Conread position:543-904
               
               
               Cow position:chr18:27109524-27109162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 174

               
               
               Conread position:544-951
               
               
               Cow position:chr18:15517388-15517002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:273
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):160, 7

               
               
               Conread position:547-944
               
               
               Cow position:chr18:21251763-21252157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:262
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):183, 7

               
               
               Conread position:549-945
               
               
               Cow position:chr18:3164729-3164343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:257
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):125, 16

               
               
               Conread position:556-767
               
               
               Cow position:chr18:44549125-44548917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):19, 6

               
               
               Conread position:562-937
               
               
               Cow position:chr18:39662571-39662943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 7

               
               
               Conread position:565-958
               
               
               Cow position:chr18:39875465-39875059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 62

               
               
               Conread position:566-713
               
               
               Cow position:chr18:12809654-12809801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):27, 60

               
               
               Conread position:566-760
               
               
               Cow position:chr18:15340650-15340456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):9, 58

               
               
               Conread position:566-761
               
               
               Cow position:chr18:33606427-33606620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):53, 19

               
               
               Conread position:566-855
               
               
               Cow position:chr18:50082450-50082174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:566-872
               
               
               Cow position:chr18:28924037-28923749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):22, 54

               
               
               Conread position:566-936
               
               
               Cow position:chr18:33502585-33502227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):170, 30

               
               
               Conread position:566-948
               
               
               Cow position:chr18:52170676-52171040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:248
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):60, 27

               
               
               Conread position:566-951
               
               
               Cow position:chr18:9089496-9089868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:256
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):31, 43

               
               
               Conread position:567-808
               
               
               Cow position:chr18:47812267-47812505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):25, 34

               
               
               Conread position:569-842
               
               
               Cow position:chr18:51190790-51190529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):141, 54

               
               
               Conread position:573-941
               
               
               Cow position:chr18:5072609-5072251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):21, 52

               
               
               Conread position:574-816
               
               
               Cow position:chr18:14815532-14815304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):45, 76

               
               
               Conread position:574-819
               
               
               Cow position:chr18:13507933-13507693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):148, 49

               
               
               Conread position:574-841
               
               
               Cow position:chr18:35012503-35012248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):23, 50

               
               
               Conread position:574-860
               
               
               Cow position:chr18:33157620-33157903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:194
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):19, 54

               
               
               Conread position:574-875
               
               
               Cow position:chr18:25647447-25647144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):18, 50

               
               
               Conread position:574-935
               
               
               Cow position:chr18:55709839-55710187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:240
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):267, 11

               
               
               Conread position:574-941
               
               
               Cow position:chr18:12270314-12270678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:255
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):25, 51

               
               
               Conread position:574-949
               
               
               Cow position:chr18:55692619-55692992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:254
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):19, 54

               
               
               Conread position:574-950
               
               
               Cow position:chr18:17649937-17649564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:262
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):19, 73

               
               
               Conread position:575-936
               
               
               Cow position:chr18:30360329-30359982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):12, 49

               
               
               Conread position:575-940
               
               
               Cow position:chr18:22056063-22055695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:267
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):16, 49

               
               
               Conread position:576-761
               
               
               Cow position:chr18:10861630-10861440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):43, 138

               
               
               Conread position:576-796
               
               
               Cow position:chr18:6103288-6103073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):141, 12

               
               
               Conread position:576-840
               
               
               Cow position:chr18:16686530-16686267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):16, 48

               
               
               Conread position:576-846
               
               
               Cow position:chr18:21102966-21102702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):50, 131

               
               
               Conread position:576-854
               
               
               Cow position:chr18:11377174-11377446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):28, 9

               
               
               Conread position:576-869
               
               
               Cow position:chr18:19273290-19272999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:211
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):130, 26

               
               
               Conread position:576-906
               
               
               Cow position:chr18:8299824-8300156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):76, 13

               
               
               Conread position:576-912
               
               
               Cow position:chr18:55000927-55000600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):147, 9

               
               
               Conread position:576-941
               
               
               Cow position:chr18:17391169-17390824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):301, 47

               
               
               Conread position:576-941
               
               
               Cow position:chr18:47511805-47512161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:262
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):10, 48

               
               
               Conread position:576-948
               
               
               Cow position:chr18:56155307-56155689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:266
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):19, 51

               
               
               Conread position:576-950
               
               
               Cow position:chr18:32873400-32873774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:251
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):19, 76

               
               
               Conread position:576-951
               
               
               Cow position:chr18:16545651-16545283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:248
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):367, 16

               
               
               Conread position:576-955
               
               
               Cow position:chr18:6610051-6609670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:258
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):43, 9

               
               
               Conread position:577-700
               
               
               Cow position:chr18:26286720-26286841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):102, 48

               
               
               Conread position:577-706
               
               
               Cow position:chr18:36445246-36445376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):15, 31

               
               
               Conread position:577-752
               
               
               Cow position:chr18:21205170-21205344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):15, 48

               
               
               Conread position:577-752
               
               
               Cow position:chr18:35636542-35636366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):48, 134

               
               
               Conread position:577-755
               
               
               Cow position:chr18:11166787-11166964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):11, 134

               
               
               Conread position:577-831
               
               
               Cow position:chr18:23766605-23766350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):15, 47

               
               
               Conread position:577-842
               
               
               Cow position:chr18:1585308-1585043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):149, 25

               
               
               Conread position:577-860
               
               
               Cow position:chr18:56159268-56159549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 119

               
               
               Conread position:577-866
               
               
               Cow position:chr18:34527288-34527002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):201, 16

               
               
               Conread position:577-937
               
               
               Cow position:chr18:55498870-55499232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:256
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):50, 102

               
               
               Conread position:577-941
               
               
               Cow position:chr18:43283950-43283590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 67

               
               
               Conread position:577-944
               
               
               Cow position:chr18:29371676-29372039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 86

               
               
               Conread position:577-951
               
               
               Cow position:chr18:22121073-22120709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 48

               
               
               Conread position:577-951
               
               
               Cow position:chr18:56181651-56181280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:272
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):15, 38

               
               
               Conread position:577-956
               
               
               Cow position:chr18:9010530-9010886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:257
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):11, 50

               
               
               Conread position:577-959
               
               
               Cow position:chr18:3209522-3209901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):23, 47

               
               
               Conread position:578-816
               
               
               Cow position:chr18:15025483-15025716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):124, 71

               
               
               Conread position:578-848
               
               
               Cow position:chr18:47525209-47525484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):45, 86

               
               
               Conread position:578-950
               
               
               Cow position:chr18:33896618-33896239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 45

               
               
               Conread position:579-959
               
               
               Cow position:chr18:4668684-4668324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:255
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):14, 93

               
               
               Conread position:581-751
               
               
               Cow position:chr18:1582467-1582297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):7, 79

               
               
               Conread position:581-860
               
               
               Cow position:chr18:17005066-17005349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):11, 92

               
               
               Conread position:581-878
               
               
               Cow position:chr18:32883118-32883407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):7, 43

               
               
               Conread position:581-879
               
               
               Cow position:chr18:19645990-19646282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):141, 95

               
               
               Conread position:581-937
               
               
               Cow position:chr18:9066511-9066862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:246
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):121, 68

               
               
               Conread position:581-941
               
               
               Cow position:chr18:5189880-5189525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 93

               
               
               Conread position:581-941
               
               
               Cow position:chr18:42479776-42479414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 44

               
               
               Conread position:581-941
               
               
               Cow position:chr18:55119693-55120033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:248
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:581-949
               
               
               Cow position:chr18:46276497-46276125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:247
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):11, 119

               
               
               Conread position:581-951
               
               
               Cow position:chr18:23447270-23446883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 213

               
               
               Conread position:581-952
               
               
               Cow position:chr18:23715073-23714710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):62, 26

               
               
               Conread position:581-960
               
               
               Cow position:chr18:44137306-44137679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:253
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):11, 88

               
               
               Conread position:582-829
               
               
               Cow position:chr18:38344619-38344863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):139, 42

               
               
               Conread position:584-819
               
               
               Cow position:chr18:36297217-36296966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:585-843
               
               
               Cow position:chr18:56165805-56166052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):75, 39

               
               
               Conread position:585-892
               
               
               Cow position:chr18:29058677-29058385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):241, 38

               
               
               Conread position:585-930
               
               
               Cow position:chr18:16044335-16043995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):237, 40

               
               
               Conread position:585-930
               
               
               Cow position:chr18:45104624-45104274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):137, 36

               
               
               Conread position:585-937
               
               
               Cow position:chr18:3416992-3417328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:235
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):138, 28

               
               
               Conread position:585-939
               
               
               Cow position:chr18:37002450-37002801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:244
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):178, 38

               
               
               Conread position:585-941
               
               
               Cow position:chr18:3044251-3044623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:256
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):34, 63

               
               
               Conread position:585-959
               
               
               Cow position:chr18:18592293-18592647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:257
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:585-960
               
               
               Cow position:chr18:55505223-55505586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 120

               
               
               Conread position:586-842
               
               
               Cow position:chr18:36201808-36201559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):111, 37

               
               
               Conread position:588-948
               
               
               Cow position:chr18:19193545-19193198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:246
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):350, 7

               
               
               Conread position:589-844
               
               
               Cow position:chr18:55806813-55806561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):40, 117

               
               
               Conread position:589-941
               
               
               Cow position:chr18:8171264-8170925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:240
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:589-941
               
               
               Cow position:chr18:52460043-52459688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:229
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):100, 7

               
               
               Conread position:590-857
               
               
               Cow position:chr18:18369541-18369277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:193
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):132, 33

               
               
               Conread position:590-918
               
               
               Cow position:chr18:38607045-38607376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):125, 33

               
               
               Conread position:591-705
               
               
               Cow position:chr18:3098499-3098382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:95
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:591-720
               
               
               Cow position:chr18:18815854-18815720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:591-734
               
               
               Cow position:chr18:16847514-16847657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):131, 111

               
               
               Conread position:591-752
               
               
               Cow position:chr18:219155-219320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:591-752
               
               
               Cow position:chr18:7970190-7970352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):25, 76

               
               
               Conread position:591-752
               
               
               Cow position:chr18:24945986-24945825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):35, 76

               
               
               Conread position:591-753
               
               
               Cow position:chr18:267993-267834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):141, 73

               
               
               Conread position:591-767
               
               
               Cow position:chr18:21401796-21401619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):35, 80

               
               
               Conread position:591-795
               
               
               Cow position:chr18:33407437-33407640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):10, 33

               
               
               Conread position:591-797
               
               
               Cow position:chr18:8105123-8104914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):80, 32

               
               
               Conread position:591-813
               
               
               Cow position:chr18:35537412-35537195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):30, 60

               
               
               Conread position:591-816
               
               
               Cow position:chr18:25984747-25984527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:591-826
               
               
               Cow position:chr18:7947208-7947444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):32, 134

               
               
               Conread position:591-829
               
               
               Cow position:chr18:36184078-36183849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):29, 71

               
               
               Conread position:591-831
               
               
               Cow position:chr18:13359887-13360113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:591-831
               
               
               Cow position:chr18:29796602-29796369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):172, 33

               
               
               Conread position:591-842
               
               
               Cow position:chr18:49100547-49100298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):119, 32

               
               
               Conread position:591-849
               
               
               Cow position:chr18:44802065-44801812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):132, 33

               
               
               Conread position:591-855
               
               
               Cow position:chr18:30794257-30794509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:184
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):115, 32

               
               
               Conread position:591-855
               
               
               Cow position:chr18:36746432-36746176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):27, 54

               
               
               Conread position:591-856
               
               
               Cow position:chr18:38686917-38687164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:591-859
               
               
               Cow position:chr18:51212009-51212270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-860
               
               
               Cow position:chr18:11322419-11322684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):46, 64

               
               
               Conread position:591-860
               
               
               Cow position:chr18:36458754-36459019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):29, 119

               
               
               Conread position:591-866
               
               
               Cow position:chr18:48828959-48828681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):111, 176

               
               
               Conread position:591-870
               
               
               Cow position:chr18:22214304-22214586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:201
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):111, 64

               
               
               Conread position:591-870
               
               
               Cow position:chr18:39434650-39434922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):130, 35

               
               
               Conread position:591-871
               
               
               Cow position:chr18:21740987-21740715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):269, 32

               
               
               Conread position:591-872
               
               
               Cow position:chr18:19896633-19896353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):131, 269

               
               
               Conread position:591-874
               
               
               Cow position:chr18:21266333-21266608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):131, 44

               
               
               Conread position:591-874
               
               
               Cow position:chr18:48453517-48453776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:591-878
               
               
               Cow position:chr18:2864176-2863886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):35, 263

               
               
               Conread position:591-896
               
               
               Cow position:chr18:52472320-52472629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):117, 35

               
               
               Conread position:591-913
               
               
               Cow position:chr18:23821994-23821691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:591-915
               
               
               Cow position:chr18:28101454-28101770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-927
               
               
               Cow position:chr18:11183768-11184091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:235
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-933
               
               
               Cow position:chr18:37382271-37381933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 113

               
               
               Conread position:591-935
               
               
               Cow position:chr18:5578129-5578455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):108, 32

               
               
               Conread position:591-935
               
               
               Cow position:chr18:5766235-5766569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):130, 33

               
               
               Conread position:591-936
               
               
               Cow position:chr18:32430758-32430436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:229
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):35, 75

               
               
               Conread position:591-937
               
               
               Cow position:chr18:3158780-3158421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:243
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):56, 33

               
               
               Conread position:591-937
               
               
               Cow position:chr18:10977384-10977053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:243
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):132, 33

               
               
               Conread position:591-937
               
               
               Cow position:chr18:31082504-31082181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):252, 32

               
               
               Conread position:591-937
               
               
               Cow position:chr18:42432271-42431930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:237
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):133, 32

               
               
               Conread position:591-938
               
               
               Cow position:chr18:39115317-39114955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:250
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):93, 126

               
               
               Conread position:591-938
               
               
               Cow position:chr18:51756915-51757257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 90

               
               
               Conread position:591-941
               
               
               Cow position:chr18:247860-247531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:238
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):9, 34

               
               
               Conread position:591-941
               
               
               Cow position:chr18:1399529-1399186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):132, 38

               
               
               Conread position:591-941
               
               
               Cow position:chr18:1954767-1954414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 33

               
               
               Conread position:591-941
               
               
               Cow position:chr18:3211694-3212046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 274

               
               
               Conread position:591-941
               
               
               Cow position:chr18:9974501-9974164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:239
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-941
               
               
               Cow position:chr18:10904672-10905013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr18:11691585-11691240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr18:12023812-12023473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-941
               
               
               Cow position:chr18:12058839-12059160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):125, 22

               
               
               Conread position:591-941
               
               
               Cow position:chr18:12242099-12242443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:232
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):18, 33

               
               
               Conread position:591-941
               
               
               Cow position:chr18:38985514-38985857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:246
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):118, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr18:43555702-43555347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):258, 26

               
               
               Conread position:591-944
               
               
               Cow position:chr18:14586649-14586310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:249
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):28, 121

               
               
               Conread position:591-944
               
               
               Cow position:chr18:55759653-55759298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:231
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):69, 106

               
               
               Conread position:591-945
               
               
               Cow position:chr18:33007883-33008254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:261
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-947
               
               
               Cow position:chr18:7108949-7109305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 120

               
               
               Conread position:591-948
               
               
               Cow position:chr18:3115282-3115629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):29, 106

               
               
               Conread position:591-948
               
               
               Cow position:chr18:49200467-49200808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):31, 55

               
               
               Conread position:591-949
               
               
               Cow position:chr18:346679-346321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 65

               
               
               Conread position:591-949
               
               
               Cow position:chr18:4625722-4626058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:243
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):35, 57

               
               
               Conread position:591-949
               
               
               Cow position:chr18:43823126-43822779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:238
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):32, 54

               
               
               Conread position:591-949
               
               
               Cow position:chr18:55552792-55553147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:248
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):35, 108

               
               
               Conread position:591-950
               
               
               Cow position:chr18:3180243-3180587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):346, 33

               
               
               Conread position:591-950
               
               
               Cow position:chr18:6881525-6881181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:242
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):238, 32

               
               
               Conread position:591-950
               
               
               Cow position:chr18:16313206-16313551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:242
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):35, 96

               
               
               Conread position:591-950
               
               
               Cow position:chr18:37023730-37023361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 33

               
               
               Conread position:591-951
               
               
               Cow position:chr18:21195515-21195171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:246
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):110, 32

               
               
               Conread position:591-951
               
               
               Cow position:chr18:44262449-44262801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:253
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):56, 14

               
               
               Conread position:591-951
               
               
               Cow position:chr18:54572470-54572114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:247
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):177, 117

               
               
               Conread position:591-952
               
               
               Cow position:chr18:10575931-10576279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:257
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):132, 33

               
               
               Conread position:591-952
               
               
               Cow position:chr18:28930807-28930463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:257
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):32, 55

               
               
               Conread position:591-952
               
               
               Cow position:chr18:40759038-40759398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:252
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):227, 19

               
               
               Conread position:591-954
               
               
               Cow position:chr18:50382081-50382430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:253
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):177, 33

               
               
               Conread position:591-954
               
               
               Cow position:chr18:55747506-55747869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 108

               
               
               Conread position:591-955
               
               
               Cow position:chr18:16227388-16227741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):86, 58

               
               
               Conread position:591-955
               
               
               Cow position:chr18:39811748-39811403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:253
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):36, 60

               
               
               Conread position:591-958
               
               
               Cow position:chr18:4884688-4884335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-958
               
               
               Cow position:chr18:29648608-29648964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):118, 32

               
               
               Conread position:591-958
               
               
               Cow position:chr18:48713372-48713724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 32

               
               
               Conread position:591-959
               
               
               Cow position:chr18:7955968-7956334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 16

               
               
               Conread position:591-959
               
               
               Cow position:chr18:29958335-29958000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:257
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):9, 33

               
               
               Conread position:591-959
               
               
               Cow position:chr18:51691641-51691277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:247
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):125, 59

               
               
               Conread position:591-960
               
               
               Cow position:chr18:52477973-52478340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):104, 35

               
               
               Conread position:592-736
               
               
               Cow position:chr18:18868571-18868711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:592-824
               
               
               Cow position:chr18:4381115-4381345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):118, 31

               
               
               Conread position:592-848
               
               
               Cow position:chr18:4666387-4666141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):122, 32

               
               
               Conread position:592-865
               
               
               Cow position:chr18:7359563-7359838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):30, 96

               
               
               Conread position:592-925
               
               
               Cow position:chr18:39001979-39001664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 78

               
               
               Conread position:592-935
               
               
               Cow position:chr18:42747417-42747759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:249
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):34, 69

               
               
               Conread position:592-936
               
               
               Cow position:chr18:19143692-19143343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 107

               
               
               Conread position:592-937
               
               
               Cow position:chr18:6309907-6310242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):131, 31

               
               
               Conread position:592-937
               
               
               Cow position:chr18:46048585-46048916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:242
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):299, 18

               
               
               Conread position:592-941
               
               
               Cow position:chr18:2592345-2591994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):134, 110

               
               
               Conread position:592-948
               
               
               Cow position:chr18:9029446-9029786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:238
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):34, 53

               
               
               Conread position:592-949
               
               
               Cow position:chr18:52637700-52637353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):34, 117

               
               
               Conread position:592-951
               
               
               Cow position:chr18:12118016-12117677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):204, 31

               
               
               Conread position:593-755
               
               
               Cow position:chr18:52658239-52658395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:593-762
               
               
               Cow position:chr18:47314465-47314290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):102, 165

               
               
               Conread position:593-767
               
               
               Cow position:chr18:27637035-27637207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):25, 67

               
               
               Conread position:593-820
               
               
               Cow position:chr18:4330779-4331009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):32, 81

               
               
               Conread position:593-820
               
               
               Cow position:chr18:4540054-4539834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):191, 30

               
               
               Conread position:593-842
               
               
               Cow position:chr18:25282728-25282484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:593-848
               
               
               Cow position:chr18:56191147-56190886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):13, 39

               
               
               Conread position:593-855
               
               
               Cow position:chr18:56172192-56171931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):85, 183

               
               
               Conread position:593-872
               
               
               Cow position:chr18:52635260-52634971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):26, 268

               
               
               Conread position:593-875
               
               
               Cow position:chr18:51392817-51392540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):26, 82

               
               
               Conread position:593-886
               
               
               Cow position:chr18:47835651-47835938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:209
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):81, 76

               
               
               Conread position:593-896
               
               
               Cow position:chr18:3387298-3386991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):22, 57

               
               
               Conread position:593-922
               
               
               Cow position:chr18:29356802-29356486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):112, 30

               
               
               Conread position:593-930
               
               
               Cow position:chr18:13034487-13034161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:593-937
               
               
               Cow position:chr18:9365741-9366084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 30

               
               
               Conread position:593-940
               
               
               Cow position:chr18:55789165-55788829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:227
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):182, 31

               
               
               Conread position:593-941
               
               
               Cow position:chr18:18919134-18918797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 48

               
               
               Conread position:593-941
               
               
               Cow position:chr18:30341351-30341016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:250
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):31, 14

               
               
               Conread position:593-941
               
               
               Cow position:chr18:31672689-31672352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:244
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):33, 94

               
               
               Conread position:593-941
               
               
               Cow position:chr18:45904069-45903730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:593-948
               
               
               Cow position:chr18:39623623-39623977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:248
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):22, 18

               
               
               Conread position:593-949
               
               
               Cow position:chr18:4628857-4629219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:237
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):33, 83

               
               
               Conread position:593-949
               
               
               Cow position:chr18:7487083-7487409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:240
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:593-949
               
               
               Cow position:chr18:7965060-7965406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:249
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):95, 35

               
               
               Conread position:593-950
               
               
               Cow position:chr18:3193529-3193884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):233, 30

               
               
               Conread position:593-950
               
               
               Cow position:chr18:7415204-7414856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:255
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):30, 111

               
               
               Conread position:593-951
               
               
               Cow position:chr18:18962012-18961656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:235
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):125, 80

               
               
               Conread position:594-923
               
               
               Cow position:chr18:30430594-30430913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):32, 51

               
               
               Conread position:594-958
               
               
               Cow position:chr18:26355204-26354858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:252
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):28, 59

               
               
               Conread position:595-855
               
               
               Cow position:chr18:56183768-56184018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:595-937
               
               
               Cow position:chr18:46453048-46452721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):173, 25

               
               
               Conread position:595-941
               
               
               Cow position:chr18:20271193-20270845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):119, 21

               
               
               Conread position:595-948
               
               
               Cow position:chr18:10322631-10322969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):28, 93

               
               
               Conread position:595-950
               
               
               Cow position:chr18:15614033-15613693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):138, 28

               
               
               Conread position:595-951
               
               
               Cow position:chr18:19849929-19849595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):132, 28

               
               
               Conread position:595-959
               
               
               Cow position:chr18:7950944-7951300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 32

               
               
               Conread position:596-700
               
               
               Cow position:chr18:23808046-23807942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:85
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:596-752
               
               
               Cow position:chr18:56150822-56150663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):113, 28

               
               
               Conread position:596-915
               
               
               Cow position:chr18:51676268-51675944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):24, 80

               
               
               Conread position:596-945
               
               
               Cow position:chr18:50974468-50974118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:248
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):33, 75

               
               
               Conread position:596-951
               
               
               Cow position:chr18:33504432-33504087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):129, 29

               
               
               Conread position:596-959
               
               
               Cow position:chr18:51406083-51405731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 110

               
               
               Conread position:596-960
               
               
               Cow position:chr18:20641663-20641316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:244
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):58, 33

               
               
               Conread position:597-739
               
               
               Cow position:chr18:52864483-52864340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):23, 121

               
               
               Conread position:597-866
               
               
               Cow position:chr18:4796800-4797058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:597-941
               
               
               Cow position:chr18:10891343-10891677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:229
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):11, 27

               
               
               Conread position:597-950
               
               
               Cow position:chr18:11867169-11867517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:255
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):127, 29

               
               
               Conread position:597-950
               
               
               Cow position:chr18:33299731-33300059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:237
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:597-951
               
               
               Cow position:chr18:9557811-9558142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:238
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):10, 27

               
               
               Conread position:597-955
               
               
               Cow position:chr18:12273481-12273832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 109

               
               
               Conread position:598-753
               
               
               Cow position:chr18:35582271-35582116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):102, 25

               
               
               Conread position:598-937
               
               
               Cow position:chr18:7952031-7952372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:223
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):108, 31

               
               
               Conread position:598-941
               
               
               Cow position:chr18:28658079-28657753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:598-944
               
               
               Cow position:chr18:4955295-4955629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):162, 51

               
               
               Conread position:598-951
               
               
               Cow position:chr18:20126135-20126470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:240
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):116, 25

               
               
               Conread position:598-958
               
               
               Cow position:chr18:52684778-52684419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:246
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):97, 27

               
               
               Conread position:599-863
               
               
               Cow position:chr18:51850729-51850473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):27, 108

               
               
               Conread position:599-937
               
               
               Cow position:chr18:48633623-48633939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):124, 24

               
               
               Conread position:600-903
               
               
               Cow position:chr18:2774299-2774008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):130, 12

               
               
               Conread position:601-938
               
               
               Cow position:chr18:43950656-43950991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 23

               
               
               Conread position:602-941
               
               
               Cow position:chr18:55701819-55701496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):21, 42

               
               
               Conread position:604-944
               
               
               Cow position:chr18:23616045-23615706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:232
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):100, 66

               
               
               Conread position:605-767
               
               
               Cow position:chr18:29991682-29991515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):37, 110

               
               
               Conread position:606-959
               
               
               Cow position:chr18:30225707-30225346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:245
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):20, 278

               
               
               Conread position:607-927
               
               
               Cow position:chr18:35873913-35874230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:225
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):14, 110

               
               
               Conread position:607-941
               
               
               Cow position:chr18:4556330-4555998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 97

               
               
               Conread position:607-941
               
               
               Cow position:chr18:11779498-11779816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:607-941
               
               
               Cow position:chr18:12113538-12113202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):90, 16

               
               
               Conread position:608-941
               
               
               Cow position:chr18:24975015-24974676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):85, 137

               
               
               Conread position:608-959
               
               
               Cow position:chr18:45453546-45453892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):52, 100

               
               
               Conread position:609-842
               
               
               Cow position:chr18:3370739-3370970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):113, 14

               
               
               Conread position:609-950
               
               
               Cow position:chr18:55140718-55140381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):121, 16

               
               
               Conread position:610-941
               
               
               Cow position:chr18:42751774-42751422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:238
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):16, 91

               
               
               Conread position:610-947
               
               
               Cow position:chr18:51644185-51643843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:221
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:612-855
               
               
               Cow position:chr18:52854893-52855138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):90, 167

               
               
               Conread position:612-941
               
               
               Cow position:chr18:55714827-55714500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):112, 85

               
               
               Conread position:612-958
               
               
               Cow position:chr18:51643526-51643188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 57

               
               
               Conread position:613-949
               
               
               Cow position:chr18:19687864-19688202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 103

               
               
               Conread position:616-949
               
               
               Cow position:chr18:6005648-6005327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):100, 56

               
               
               Conread position:618-738
               
               
               Cow position:chr18:52382548-52382670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:618-798
               
               
               Cow position:chr18:43065377-43065556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):101, 61

               
               
               Conread position:618-872
               
               
               Cow position:chr18:16997101-16997352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):27, 47

               
               
               Conread position:618-906
               
               
               Cow position:chr18:35530846-35530579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:618-930
               
               
               Cow position:chr18:24266561-24266248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 76

               
               
               Conread position:618-938
               
               
               Cow position:chr18:20174280-20173974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):79, 92

               
               
               Conread position:618-949
               
               
               Cow position:chr18:380781-381098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):105, 54

               
               
               Conread position:618-951
               
               
               Cow position:chr18:5632114-5632440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 92

               
               
               Conread position:618-952
               
               
               Cow position:chr18:30405814-30405479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):108, 79

               
               
               Conread position:619-903
               
               
               Cow position:chr18:858669-858953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):68, 91

               
               
               Conread position:619-930
               
               
               Cow position:chr18:42290473-42290179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):105, 35

               
               
               Conread position:619-941
               
               
               Cow position:chr18:42293201-42292896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):105, 35

               
               
               Conread position:619-959
               
               
               Cow position:chr18:1571387-1571053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:237
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):111, 78

               
               
               Conread position:620-937
               
               
               Cow position:chr18:24508389-24508071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):53, 42

               
               
               Conread position:620-941
               
               
               Cow position:chr18:29474591-29474904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):82, 188

               
               
               Conread position:621-929
               
               
               Cow position:chr18:26998733-26999043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 84

               
               
               Conread position:624-830
               
               
               Cow position:chr18:22274981-22274783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):78, 94

               
               
               Conread position:624-951
               
               
               Cow position:chr18:4264536-4264219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):75, 83

               
               
               Conread position:624-955
               
               
               Cow position:chr18:23162747-23163075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):98, 84

               
               
               Conread position:624-955
               
               
               Cow position:chr18:49038316-49038635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:233
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):76, 14

               
               
               Conread position:625-951
               
               
               Cow position:chr18:11907051-11907379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:227
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):45, 64

               
               
               Conread position:626-853
               
               
               Cow position:chr18:51656187-51655961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):106, 83

               
               
               Conread position:626-956
               
               
               Cow position:chr18:10214339-10214006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 147

               
               
               Conread position:627-929
               
               
               Cow position:chr18:17368712-17368423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:627-950
               
               
               Cow position:chr18:49841136-49841462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):89, 142

               
               
               Conread position:627-959
               
               
               Cow position:chr18:23623775-23623446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:627-959
               
               
               Cow position:chr18:34813507-34813839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):20, 73

               
               
               Conread position:628-872
               
               
               Cow position:chr18:10897892-10898132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):81, 67

               
               
               Conread position:633-951
               
               
               Cow position:chr18:42988449-42988129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:224
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):36, 84

               
               
               Conread position:634-958
               
               
               Cow position:chr18:1023850-1024178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):83, 17

               
               
               Conread position:635-941
               
               
               Cow position:chr18:37303010-37303320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):95, 74

               
               
               Conread position:636-941
               
               
               Cow position:chr18:55549595-55549898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):86, 59

               
               
               Conread position:643-941
               
               
               Cow position:chr18:4490022-4489735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):224, 50

               
               
               Conread position:649-935
               
               
               Cow position:chr18:3085635-3085347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):115, 65

               
               
               Conread position:650-860
               
               
               Cow position:chr18:47967043-47966840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:650-919
               
               
               Cow position:chr18:34834371-34834640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):20, 61

               
               
               Conread position:650-937
               
               
               Cow position:chr18:33158834-33159105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:195
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:650-937
               
               
               Cow position:chr18:49017383-49017645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):72, 64

               
               
               Conread position:650-941
               
               
               Cow position:chr18:727912-728187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):7, 21

               
               
               Conread position:650-941
               
               
               Cow position:chr18:50959366-50959655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:209
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):80, 55

               
               
               Conread position:650-941
               
               
               Cow position:chr18:52403091-52402799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):63, 189

               
               
               Conread position:650-945
               
               
               Cow position:chr18:53053365-53053059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:650-949
               
               
               Cow position:chr18:55583299-55583597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):31, 21

               
               
               Conread position:651-960
               
               
               Cow position:chr18:35751495-35751193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):183, 46

               
               
               Conread position:652-872
               
               
               Cow position:chr18:19883412-19883633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):78, 58

               
               
               Conread position:652-948
               
               
               Cow position:chr18:49268107-49267808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):64, 45

               
               
               Conread position:652-949
               
               
               Cow position:chr18:12584961-12584670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):74, 55

               
               
               Conread position:652-960
               
               
               Cow position:chr18:1931572-1931272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:215
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):78, 33

               
               
               Conread position:653-948
               
               
               Cow position:chr18:35535267-35534978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):41, 68

               
               
               Conread position:654-947
               
               
               Cow position:chr18:2146701-2146420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):44, 16

               
               
               Conread position:654-951
               
               
               Cow position:chr18:23630721-23630439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):53, 9

               
               
               Conread position:657-874
               
               
               Cow position:chr18:5078888-5078672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):73, 57

               
               
               Conread position:657-924
               
               
               Cow position:chr18:24759768-24759510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:657-930
               
               
               Cow position:chr18:23169463-23169736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):39, 62

               
               
               Conread position:658-911
               
               
               Cow position:chr18:20175303-20175058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):16, 11

               
               
               Conread position:658-936
               
               
               Cow position:chr18:4758151-4757872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):41, 110

               
               
               Conread position:658-941
               
               
               Cow position:chr18:42212333-42212610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:658-955
               
               
               Cow position:chr18:43797065-43796778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):280, 44

               
               
               Conread position:660-941
               
               
               Cow position:chr18:53642862-53642583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:192
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):39, 95

               
               
               Conread position:662-960
               
               
               Cow position:chr18:47485945-47486233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):272, 44

               
               
               Conread position:666-958
               
               
               Cow position:chr18:34220025-34219722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):140, 42

               
               
               Conread position:666-959
               
               
               Cow position:chr18:25598345-25598053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):41, 31

               
               
               Conread position:672-941
               
               
               Cow position:chr18:22569165-22568902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):50, 25

               
               
               Conread position:673-896
               
               
               Cow position:chr18:48961837-48962060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):57, 34

               
               
               Conread position:673-949
               
               
               Cow position:chr18:53795385-53795658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):41, 29

               
               
               Conread position:673-954
               
               
               Cow position:chr18:10065625-10065337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):33, 44

               
               
               Conread position:673-955
               
               
               Cow position:chr18:22180881-22180601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):43, 184

               
               
               Conread position:674-930
               
               
               Cow position:chr18:47416898-47417155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):30, 143

               
               
               Conread position:676-945
               
               
               Cow position:chr18:32189605-32189347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):39, 168

               
               
               Conread position:676-950
               
               
               Cow position:chr18:49015032-49015291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):47, 88

               
               
               Conread position:677-949
               
               
               Cow position:chr18:16812058-16812329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:677-951
               
               
               Cow position:chr18:22790180-22789914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):46, 37

               
               
               Conread position:678-941
               
               
               Cow position:chr18:52647738-52647477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):44, 37

               
               
               Conread position:679-945
               
               
               Cow position:chr18:21782602-21782855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:194
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):51, 27

               
               
               Conread position:680-947
               
               
               Cow position:chr18:36449806-36450075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):25, 42

               
               
               Conread position:680-949
               
               
               Cow position:chr18:9755986-9756256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):42, 35

               
               
               Conread position:680-959
               
               
               Cow position:chr18:19868353-19868076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):24, 75

               
               
               Conread position:682-941
               
               
               Cow position:chr18:45558059-45558309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):48, 12

               
               
               Conread position:686-941
               
               
               Cow position:chr18:52413879-52414133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):37, 16

               
               
               Conread position:689-929
               
               
               Cow position:chr18:22516618-22516382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):7, 27

               
               
               Conread position:689-950
               
               
               Cow position:chr18:14225307-14225563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):20, 171

               
               
               Conread position:693-937
               
               
               Cow position:chr18:37189373-37189130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):37, 21

               
               
               Conread position:693-948
               
               
               Cow position:chr18:5600556-5600813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):24, 13

               
               
               Conread position:695-940
               
               
               Cow position:chr18:5647736-5647973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):9, 28

               
               
               Conread position:696-941
               
               
               Cow position:chr18:51383469-51383232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):27, 10

               
               
               Conread position:696-950
               
               
               Cow position:chr18:10051671-10051922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):34, 48

               
               
               Conread position:697-941
               
               
               Cow position:chr18:19765112-19765352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):20, 167

               
               
               Conread position:697-949
               
               
               Cow position:chr18:40281177-40280922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):9, 14

               
               
               Conread position:697-950
               
               
               Cow position:chr18:32599974-32600229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):16, 68

               
               
               Conread position:697-959
               
               
               Cow position:chr18:50359258-50359509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:701-958
               
               
               Cow position:chr18:18843942-18844195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):20, 9

               
               
               Conread position:702-959
               
               
               Cow position:chr18:44908983-44909237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):20, 12

               
               
               Conread position:703-941
               
               
               Cow position:chr18:135722-135494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:703-948
               
               
               Cow position:chr18:24719244-24719482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):27, 11

               
               
               Conread position:706-959
               
               
               Cow position:chr18:56146432-56146177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:707-937
               
               
               Cow position:chr18:56183569-56183338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):23, 67

               
               
               Conread position:709-929
               
               
               Cow position:chr18:19629068-19628848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):21, 6

               
               
               Conread position:709-941
               
               
               Cow position:chr18:38937760-38937986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:709-941
               
               
               Cow position:chr18:45622868-45622636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):22, 114

               
               
               Conread position:709-945
               
               
               Cow position:chr18:15809864-15809641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):22, 48

               
               
               Conread position:710-940
               
               
               Cow position:chr18:47548049-47547817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):13, 113

               
               
               Conread position:710-949
               
               
               Cow position:chr18:46880768-46880533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):21, 109

               
               
               Conread position:710-951
               
               
               Cow position:chr18:27078805-27079042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):14, 63

               
               
               Conread position:710-956
               
               
               Cow position:chr18:9040771-9040522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):6, 58

               
               
               Conread position:711-941
               
               
               Cow position:chr18:16659494-16659262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:712-951
               
               
               Cow position:chr18:23941684-23941440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):12, 46

               
               
               Conread position:714-930
               
               
               Cow position:chr18:40047557-40047349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):18, 86

               
               
               Conread position:714-940
               
               
               Cow position:chr18:52649406-52649174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:714-959
               
               
               Cow position:chr18:52251916-52251672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:179
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):16, 240

               
               
               Conread position:715-940
               
               
               Cow position:chr18:2773450-2773222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:715-940
               
               
               Cow position:chr18:2776953-2776725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):8, 64

               
               
               Conread position:715-959
               
               
               Cow position:chr18:11233358-11233604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):15, 37

               
               
               Conread position:715-959
               
               
               Cow position:chr18:32253566-32253323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):196, 87

               
               
               Conread position:716-941
               
               
               Cow position:chr18:35827430-35827212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):8, 53

               
               
               Conread position:716-948
               
               
               Cow position:chr18:44917701-44917927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):52, 60

               
               
               Conread position:716-959
               
               
               Cow position:chr18:46880226-46879978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):14, 234

               
               
               Conread position:724-951
               
               
               Cow position:chr18:14172255-14172037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):106, 44

               
               
               Conread position:724-959
               
               
               Cow position:chr18:50632490-50632264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:726-941
               
               
               Cow position:chr18:45898846-45899061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:726-945
               
               
               Cow position:chr18:42427574-42427786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:726-949
               
               
               Cow position:chr18:1181526-1181742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:726-960
               
               
               Cow position:chr18:6470049-6470277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:728-959
               
               
               Cow position:chr18:53093062-53092831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):132, 183

               
               
               Conread position:729-949
               
               
               Cow position:chr18:21969846-21969627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):125, 34

               
               
               Conread position:730-948
               
               
               Cow position:chr18:23648880-23649099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:731-955
               
               
               Cow position:chr18:37188038-37187812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):209, 0

               
               
               Conread position:731-959
               
               
               Cow position:chr18:11672002-11672239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):126, 62

               
               
               Conread position:732-944
               
               
               Cow position:chr18:38211121-38211328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):48, 56

               
               
               Conread position:737-949
               
               
               Cow position:chr18:697252-697045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:740-954
               
               
               Cow position:chr18:47802122-47801916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):200, 35

               
               
               Conread position:740-957
               
               
               Cow position:chr18:2794003-2793794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:741-950
               
               
               Cow position:chr18:11856870-11857071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:741-951
               
               
               Cow position:chr18:1859168-1858957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:741-955
               
               
               Cow position:chr18:20998447-20998231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):33, 26

               
               
               Conread position:741-959
               
               
               Cow position:chr18:18664404-18664182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):108, 219

               
               
               Conread position:745-955
               
               
               Cow position:chr18:49603070-49602862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:747-941
               
               
               Cow position:chr18:2108222-2108414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):123, 94

               
               
               Conread position:748-949
               
               
               Cow position:chr18:36734587-36734386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:749-947
               
               
               Cow position:chr18:23380108-23380299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):27, 15

               
               
               Conread position:749-951
               
               
               Cow position:chr18:45897709-45897903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):79, 19

               
               
               Conread position:757-945
               
               
               Cow position:chr18:238131-237943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):11, 17

               
               
               Conread position:758-944
               
               
               Cow position:chr18:29188372-29188564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:767-950
               
               
               Cow position:chr18:3709225-3709406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:773-930
               
               
               Cow position:chr18:44548745-44548591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:773-946
               
               
               Cow position:chr18:31159272-31159101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):60, 86

               
               
               Conread position:773-947
               
               
               Cow position:chr18:4000347-4000523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:773-949
               
               
               Cow position:chr18:56463729-56463554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:773-951
               
               
               Cow position:chr18:45185873-45186045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):150, 0

               
               
               Conread position:773-952
               
               
               Cow position:chr18:35857923-35857751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):132, 79

               
               
               Conread position:773-954
               
               
               Cow position:chr18:31557159-31556978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:774-937
               
               
               Cow position:chr18:19809680-19809521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:774-939
               
               
               Cow position:chr18:24022620-24022779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:774-941
               
               
               Cow position:chr18:34490282-34490447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):15, 81

               
               
               Conread position:774-949
               
               
               Cow position:chr18:17195343-17195172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:774-949
               
               
               Cow position:chr18:47175379-47175204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):117, 30

               
               
               Conread position:774-950
               
               
               Cow position:chr18:9596185-9596352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:774-951
               
               
               Cow position:chr18:36501076-36500905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):71, 77

               
               
               Conread position:774-955
               
               
               Cow position:chr18:1549547-1549359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:775-927
               
               
               Cow position:chr18:47306904-47306752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:775-941
               
               
               Cow position:chr18:48092914-48092747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:775-941
               
               
               Cow position:chr18:50004702-50004540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:775-945
               
               
               Cow position:chr18:39710110-39710285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:775-949
               
               
               Cow position:chr18:35950038-35950219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:775-956
               
               
               Cow position:chr18:8208422-8208243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:775-956
               
               
               Cow position:chr18:34444733-34444559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:775-958
               
               
               Cow position:chr18:14871601-14871421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:775-959
               
               
               Cow position:chr18:41702837-41703021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):168, 84

               
               
               Conread position:775-959
               
               
               Cow position:chr18:44514089-44514276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:776-930
               
               
               Cow position:chr18:41253544-41253698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):124, 134

               
               
               Conread position:777-938
               
               
               Cow position:chr18:27637497-27637655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:777-941
               
               
               Cow position:chr18:2576695-2576527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:777-941
               
               
               Cow position:chr18:40028220-40028390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):28, 23

               
               
               Conread position:780-958
               
               
               Cow position:chr18:4485607-4485779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:780-959
               
               
               Cow position:chr18:21751386-21751564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):166, 74

               
               
               Conread position:781-958
               
               
               Cow position:chr18:21528656-21528831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):29, 74

               
               
               Conread position:782-930
               
               
               Cow position:chr18:19143962-19143815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:782-944
               
               
               Cow position:chr18:10668343-10668504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:782-944
               
               
               Cow position:chr18:35795212-35795051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:782-948
               
               
               Cow position:chr18:2144581-2144744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):164, 68

               
               
               Conread position:782-949
               
               
               Cow position:chr18:29683464-29683301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):152, 0

               
               
               Conread position:782-951
               
               
               Cow position:chr18:45573390-45573557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:782-959
               
               
               Cow position:chr18:32002-32175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:782-959
               
               
               Cow position:chr18:49970643-49970467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):71, 62

               
               
               Conread position:783-941
               
               
               Cow position:chr18:49440852-49441009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:784-945
               
               
               Cow position:chr18:34389371-34389211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:787-935
               
               
               Cow position:chr18:28540097-28539950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):58, 119

               
               
               Conread position:787-944
               
               
               Cow position:chr18:35171363-35171518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:787-958
               
               
               Cow position:chr18:4907162-4907326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:788-960
               
               
               Cow position:chr18:41257904-41257730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):56, 10

               
               
               Conread position:790-944
               
               
               Cow position:chr18:23810102-23809952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:790-944
               
               
               Cow position:chr18:37690168-37690320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:790-954
               
               
               Cow position:chr18:19385975-19385811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:790-958
               
               
               Cow position:chr18:4857706-4857539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):66, 118

               
               
               Conread position:793-945
               
               
               Cow position:chr18:35236002-35235851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:793-948
               
               
               Cow position:chr18:30673415-30673266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:834-949
               
               
               Cow position:chr18:37160538-37160424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:91
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:859-951
               
               
               Cow position:chr18:40356860-40356768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:93
               
               
               Alignm identity:80
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:547-753
               
               
               Cow position:chr19:19173949-19174155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):139, 23

               
               
               Conread position:549-860
               
               
               Cow position:chr19:37187830-37188136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):26, 7

               
               
               Conread position:553-874
               
               
               Cow position:chr19:52214964-52215285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):16, 136

               
               
               Conread position:556-951
               
               
               Cow position:chr19:51306947-51307347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):27, 164

               
               
               Conread position:557-794
               
               
               Cow position:chr19:10232601-10232365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):35, 5

               
               
               Conread position:562-890
               
               
               Cow position:chr19:12036696-12036362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:236
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):13, 7

               
               
               Conread position:565-955
               
               
               Cow position:chr19:47859496-47859112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):282, 22

               
               
               Conread position:565-959
               
               
               Cow position:chr19:2577390-2577767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:270
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):36, 51

               
               
               Conread position:566-816
               
               
               Cow position:chr19:2734270-2734516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:566-840
               
               
               Cow position:chr19:15863222-15862960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:566-848
               
               
               Cow position:chr19:4503036-4503318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):100, 58

               
               
               Conread position:566-872
               
               
               Cow position:chr19:31846727-31846429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):35, 99

               
               
               Conread position:566-929
               
               
               Cow position:chr19:21378649-21378290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 19

               
               
               Conread position:566-929
               
               
               Cow position:chr19:26087011-26087374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:234
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):29, 106

               
               
               Conread position:566-941
               
               
               Cow position:chr19:36221749-36222121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:252
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):164, 25

               
               
               Conread position:566-958
               
               
               Cow position:chr19:23304678-23304287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 47

               
               
               Conread position:566-960
               
               
               Cow position:chr19:42417679-42418064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:258
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):29, 136

               
               
               Conread position:569-937
               
               
               Cow position:chr19:7637412-7637051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 16

               
               
               Conread position:569-950
               
               
               Cow position:chr19:13129694-13130061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 55

               
               
               Conread position:569-950
               
               
               Cow position:chr19:42694815-42695186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:255
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):143, 20

               
               
               Conread position:571-931
               
               
               Cow position:chr19:15719790-15719450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):151, 19

               
               
               Conread position:572-941
               
               
               Cow position:chr19:19804704-19804333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:242
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):54, 20

               
               
               Conread position:573-960
               
               
               Cow position:chr19:41024042-41024428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:264
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):23, 47

               
               
               Conread position:574-704
               
               
               Cow position:chr19:33932322-33932191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):23, 52

               
               
               Conread position:574-711
               
               
               Cow position:chr19:10786539-10786404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):70, 11

               
               
               Conread position:574-736
               
               
               Cow position:chr19:42746512-42746351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):20, 46

               
               
               Conread position:574-808
               
               
               Cow position:chr19:7543234-7543472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):74, 22

               
               
               Conread position:574-809
               
               
               Cow position:chr19:38637980-38637759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):22, 52

               
               
               Conread position:574-809
               
               
               Cow position:chr19:43418238-43418465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):178, 96

               
               
               Conread position:574-822
               
               
               Cow position:chr19:53657723-53657964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):18, 71

               
               
               Conread position:574-869
               
               
               Cow position:chr19:19919638-19919343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:213
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):19, 54

               
               
               Conread position:574-941
               
               
               Cow position:chr19:15437929-15438293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 99

               
               
               Conread position:574-946
               
               
               Cow position:chr19:20622478-20622850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 94

               
               
               Conread position:574-951
               
               
               Cow position:chr19:5913130-5912758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 22

               
               
               Conread position:575-857
               
               
               Cow position:chr19:35540127-35540405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):147, 21

               
               
               Conread position:575-935
               
               
               Cow position:chr19:33903593-33903244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:575-959
               
               
               Cow position:chr19:46094809-46094421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:263
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):147, 14

               
               
               Conread position:576-751
               
               
               Cow position:chr19:47727740-47727572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):145, 13

               
               
               Conread position:576-941
               
               
               Cow position:chr19:7053504-7053158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):12, 48

               
               
               Conread position:576-949
               
               
               Cow position:chr19:43673-44041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:256
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):29, 133

               
               
               Conread position:576-951
               
               
               Cow position:chr19:21198963-21199348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 50

               
               
               Conread position:576-955
               
               
               Cow position:chr19:55394734-55395111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:267
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):16, 119

               
               
               Conread position:577-822
               
               
               Cow position:chr19:10173287-10173044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):15, 164

               
               
               Conread position:577-848
               
               
               Cow position:chr19:22134316-22134054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):10, 132

               
               
               Conread position:577-854
               
               
               Cow position:chr19:16694215-16693927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:577-855
               
               
               Cow position:chr19:11442810-11443096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:577-855
               
               
               Cow position:chr19:56063605-56063324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:577-869
               
               
               Cow position:chr19:35233821-35233541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):50, 110

               
               
               Conread position:577-910
               
               
               Cow position:chr19:32457473-32457801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:238
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):15, 32

               
               
               Conread position:577-937
               
               
               Cow position:chr19:22450102-22449733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:241
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):20, 50

               
               
               Conread position:577-938
               
               
               Cow position:chr19:32506285-32505923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:255
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):15, 63

               
               
               Conread position:577-938
               
               
               Cow position:chr19:38340151-38339790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:252
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):15, 133

               
               
               Conread position:577-940
               
               
               Cow position:chr19:2589335-2589702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:253
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):15, 128

               
               
               Conread position:577-941
               
               
               Cow position:chr19:43431493-43431134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 48

               
               
               Conread position:577-954
               
               
               Cow position:chr19:386973-387333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:242
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):70, 11

               
               
               Conread position:577-955
               
               
               Cow position:chr19:52456928-52456552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:248
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):15, 53

               
               
               Conread position:577-958
               
               
               Cow position:chr19:19431057-19431421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:270
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):15, 83

               
               
               Conread position:578-718
               
               
               Cow position:chr19:42070117-42069978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):18, 94

               
               
               Conread position:578-720
               
               
               Cow position:chr19:37562169-37562034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):124, 46

               
               
               Conread position:578-736
               
               
               Cow position:chr19:35622191-35622344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:578-839
               
               
               Cow position:chr19:17273899-17273650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):28, 15

               
               
               Conread position:579-941
               
               
               Cow position:chr19:55357890-55358228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):9, 46

               
               
               Conread position:580-875
               
               
               Cow position:chr19:7404547-7404250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):49, 119

               
               
               Conread position:580-935
               
               
               Cow position:chr19:26976226-26975889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:244
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):188, 44

               
               
               Conread position:581-794
               
               
               Cow position:chr19:37647002-37646792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):11, 25

               
               
               Conread position:581-853
               
               
               Cow position:chr19:36125421-36125690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):11, 44

               
               
               Conread position:581-854
               
               
               Cow position:chr19:20984936-20984669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):11, 44

               
               
               Conread position:581-867
               
               
               Cow position:chr19:10242419-10242694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):5, 44

               
               
               Conread position:581-889
               
               
               Cow position:chr19:23222470-23222763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:581-897
               
               
               Cow position:chr19:8793844-8793527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:211
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):16, 129

               
               
               Conread position:581-911
               
               
               Cow position:chr19:10545872-10545548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:230
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:581-941
               
               
               Cow position:chr19:13316577-13316222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:249
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):11, 44

               
               
               Conread position:581-958
               
               
               Cow position:chr19:25673686-25673313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):320, 103

               
               
               Conread position:583-940
               
               
               Cow position:chr19:22779042-22779399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):141, 8

               
               
               Conread position:584-959
               
               
               Cow position:chr19:10755152-10755507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:255
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:585-700
               
               
               Cow position:chr19:48409349-48409463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:97
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:585-820
               
               
               Cow position:chr19:25999468-25999688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:585-842
               
               
               Cow position:chr19:20310792-20310547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:585-870
               
               
               Cow position:chr19:8375467-8375182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):121, 31

               
               
               Conread position:585-933
               
               
               Cow position:chr19:39104168-39103833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):34, 75

               
               
               Conread position:585-941
               
               
               Cow position:chr19:53776736-53776381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:237
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):41, 56

               
               
               Conread position:588-704
               
               
               Cow position:chr19:53953816-53953704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:95
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:588-935
               
               
               Cow position:chr19:53543051-53542706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:248
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):38, 117

               
               
               Conread position:589-838
               
               
               Cow position:chr19:40449858-40450106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):132, 35

               
               
               Conread position:589-939
               
               
               Cow position:chr19:12601649-12601988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:244
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):46, 36

               
               
               Conread position:590-918
               
               
               Cow position:chr19:39245742-39246070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:222
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):31, 81

               
               
               Conread position:590-949
               
               
               Cow position:chr19:25167244-25166900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):13, 113

               
               
               Conread position:591-688
               
               
               Cow position:chr19:53037310-53037212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:83
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:591-713
               
               
               Cow position:chr19:15442610-15442730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):105, 20

               
               
               Conread position:591-729
               
               
               Cow position:chr19:25851642-25851503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):28, 120

               
               
               Conread position:591-729
               
               
               Cow position:chr19:25851986-25851847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):28, 120

               
               
               Conread position:591-729
               
               
               Cow position:chr19:25865078-25864939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):28, 120

               
               
               Conread position:591-736
               
               
               Cow position:chr19:1552075-1552221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):27, 52

               
               
               Conread position:591-743
               
               
               Cow position:chr19:2138261-2138111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:591-753
               
               
               Cow position:chr19:3222652-3222808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):34, 82

               
               
               Conread position:591-753
               
               
               Cow position:chr19:19561354-19561519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):35, 119

               
               
               Conread position:591-753
               
               
               Cow position:chr19:44125485-44125652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:591-761
               
               
               Cow position:chr19:8839447-8839618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):121, 34

               
               
               Conread position:591-761
               
               
               Cow position:chr19:46918690-46918861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):35, 120

               
               
               Conread position:591-766
               
               
               Cow position:chr19:32450926-32451101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):97, 32

               
               
               Conread position:591-798
               
               
               Cow position:chr19:31873956-31874169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:591-805
               
               
               Cow position:chr19:47118651-47118445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):131, 33

               
               
               Conread position:591-806
               
               
               Cow position:chr19:33823161-33823376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):41, 28

               
               
               Conread position:591-807
               
               
               Cow position:chr19:8270759-8270543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):28, 116

               
               
               Conread position:591-807
               
               
               Cow position:chr19:9408528-9408744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:168
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):35, 50

               
               
               Conread position:591-816
               
               
               Cow position:chr19:35742006-35742228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):131, 27

               
               
               Conread position:591-816
               
               
               Cow position:chr19:42240447-42240229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:591-817
               
               
               Cow position:chr19:31825169-31824946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):131, 123

               
               
               Conread position:591-832
               
               
               Cow position:chr19:4329199-4328971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):36, 50

               
               
               Conread position:591-834
               
               
               Cow position:chr19:51401163-51400930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):131, 57

               
               
               Conread position:591-840
               
               
               Cow position:chr19:21363595-21363348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):58, 52

               
               
               Conread position:591-842
               
               
               Cow position:chr19:5656261-5656032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:591-844
               
               
               Cow position:chr19:31595143-31595395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):28, 60

               
               
               Conread position:591-855
               
               
               Cow position:chr19:7884427-7884683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):35, 53

               
               
               Conread position:591-855
               
               
               Cow position:chr19:18786476-18786217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-857
               
               
               Cow position:chr19:11424469-11424210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):35, 80

               
               
               Conread position:591-860
               
               
               Cow position:chr19:34620186-34619919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):118, 32

               
               
               Conread position:591-864
               
               
               Cow position:chr19:25807458-25807193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:200
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-866
               
               
               Cow position:chr19:12712032-12711759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):52, 33

               
               
               Conread position:591-866
               
               
               Cow position:chr19:25652910-25652643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):35, 94

               
               
               Conread position:591-867
               
               
               Cow position:chr19:22799235-22798961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:202
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):133, 93

               
               
               Conread position:591-868
               
               
               Cow position:chr19:14592898-14593175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):61, 32

               
               
               Conread position:591-873
               
               
               Cow position:chr19:33468868-33469146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):131, 94

               
               
               Conread position:591-874
               
               
               Cow position:chr19:21065611-21065888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:207
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):8, 36

               
               
               Conread position:591-875
               
               
               Cow position:chr19:43203145-43202865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):131, 102

               
               
               Conread position:591-875
               
               
               Cow position:chr19:53840364-53840641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):28, 85

               
               
               Conread position:591-897
               
               
               Cow position:chr19:23403796-23403497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):35, 56

               
               
               Conread position:591-903
               
               
               Cow position:chr19:23786037-23786326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-907
               
               
               Cow position:chr19:21335768-21335440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):33, 112

               
               
               Conread position:591-922
               
               
               Cow position:chr19:39057088-39057417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 32

               
               
               Conread position:591-928
               
               
               Cow position:chr19:41584819-41585147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:227
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):61, 32

               
               
               Conread position:591-929
               
               
               Cow position:chr19:14472933-14472602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):173, 111

               
               
               Conread position:591-929
               
               
               Cow position:chr19:21816806-21817142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 178

               
               
               Conread position:591-930
               
               
               Cow position:chr19:20935598-20935930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):130, 33

               
               
               Conread position:591-930
               
               
               Cow position:chr19:25526129-25526456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:237
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):113, 35

               
               
               Conread position:591-933
               
               
               Cow position:chr19:16096706-16096373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:235
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-935
               
               
               Cow position:chr19:44839068-44838758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:235
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:591-937
               
               
               Cow position:chr19:34166208-34166552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 78

               
               
               Conread position:591-937
               
               
               Cow position:chr19:35380705-35380356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:234
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):136, 41

               
               
               Conread position:591-940
               
               
               Cow position:chr19:24062136-24062461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:591-941
               
               
               Cow position:chr19:268198-268536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 33

               
               
               Conread position:591-941
               
               
               Cow position:chr19:3216862-3217191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:591-941
               
               
               Cow position:chr19:3246206-3245867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:234
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):79, 34

               
               
               Conread position:591-941
               
               
               Cow position:chr19:3812167-3811834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:236
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):310, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr19:5185401-5185070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 104

               
               
               Conread position:591-941
               
               
               Cow position:chr19:6531735-6532062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:244
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):130, 31

               
               
               Conread position:591-941
               
               
               Cow position:chr19:15887478-15887128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr19:22765465-22765800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 33

               
               
               Conread position:591-941
               
               
               Cow position:chr19:25727034-25726697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:243
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):87, 28

               
               
               Conread position:591-941
               
               
               Cow position:chr19:29625750-29626088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:242
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):133, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr19:34955849-34955526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:240
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-941
               
               
               Cow position:chr19:36059780-36060142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 16

               
               
               Conread position:591-941
               
               
               Cow position:chr19:38842711-38842369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:243
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):35, 71

               
               
               Conread position:591-941
               
               
               Cow position:chr19:43058380-43058726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:243
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):274, 117

               
               
               Conread position:591-941
               
               
               Cow position:chr19:47671594-47671922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):310, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr19:48722873-48723221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:247
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):240, 104

               
               
               Conread position:591-941
               
               
               Cow position:chr19:50562519-50562871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:232
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):106, 33

               
               
               Conread position:591-944
               
               
               Cow position:chr19:36097067-36097415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:241
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):249, 81

               
               
               Conread position:591-945
               
               
               Cow position:chr19:24137106-24137457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:253
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):110, 37

               
               
               Conread position:591-945
               
               
               Cow position:chr19:35762408-35762066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-945
               
               
               Cow position:chr19:46454698-46455032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:238
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-947
               
               
               Cow position:chr19:38111316-38111662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 79

               
               
               Conread position:591-949
               
               
               Cow position:chr19:6610153-6609789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):35, 129

               
               
               Conread position:591-949
               
               
               Cow position:chr19:31127522-31127155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):13, 123

               
               
               Conread position:591-949
               
               
               Cow position:chr19:32754366-32754725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):31, 133

               
               
               Conread position:591-949
               
               
               Cow position:chr19:33290330-33290677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:246
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):131, 73

               
               
               Conread position:591-949
               
               
               Cow position:chr19:34287869-34288211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:243
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):121, 35

               
               
               Conread position:591-949
               
               
               Cow position:chr19:53418472-53418838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):29, 85

               
               
               Conread position:591-949
               
               
               Cow position:chr19:53791582-53791237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:243
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:591-950
               
               
               Cow position:chr19:12747932-12747579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 119

               
               
               Conread position:591-950
               
               
               Cow position:chr19:20661568-20661215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:255
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):75, 32

               
               
               Conread position:591-950
               
               
               Cow position:chr19:40051546-40051199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:251
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):266, 34

               
               
               Conread position:591-951
               
               
               Cow position:chr19:39622959-39622587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:256
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):15, 35

               
               
               Conread position:591-951
               
               
               Cow position:chr19:55952309-55951965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:245
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):132, 33

               
               
               Conread position:591-952
               
               
               Cow position:chr19:14253482-14253834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:591-954
               
               
               Cow position:chr19:6688157-6687797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 118

               
               
               Conread position:591-955
               
               
               Cow position:chr19:3621275-3621630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 32

               
               
               Conread position:591-955
               
               
               Cow position:chr19:16621508-16621150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:256
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):121, 32

               
               
               Conread position:591-955
               
               
               Cow position:chr19:30471498-30471154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):348, 35

               
               
               Conread position:591-955
               
               
               Cow position:chr19:39360987-39361356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 19

               
               
               Conread position:591-955
               
               
               Cow position:chr19:41497786-41497442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:253
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):32, 95

               
               
               Conread position:591-955
               
               
               Cow position:chr19:43035086-43035445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:246
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):70, 74

               
               
               Conread position:591-955
               
               
               Cow position:chr19:53372052-53371692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:250
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):32, 57

               
               
               Conread position:591-955
               
               
               Cow position:chr19:55590081-55590437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 40

               
               
               Conread position:591-957
               
               
               Cow position:chr19:24144865-24145225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):268, 32

               
               
               Conread position:591-958
               
               
               Cow position:chr19:7668547-7668898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 24

               
               
               Conread position:591-958
               
               
               Cow position:chr19:12698168-12698521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:257
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):116, 32

               
               
               Conread position:591-958
               
               
               Cow position:chr19:25382857-25382477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 129

               
               
               Conread position:591-958
               
               
               Cow position:chr19:26057701-26057346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-958
               
               
               Cow position:chr19:42563980-42564354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 83

               
               
               Conread position:591-959
               
               
               Cow position:chr19:17795741-17796115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):109, 32

               
               
               Conread position:591-959
               
               
               Cow position:chr19:36845091-36845449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 14

               
               
               Conread position:591-959
               
               
               Cow position:chr19:39576726-39576364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-959
               
               
               Cow position:chr19:48021789-48021426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:249
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):29, 105

               
               
               Conread position:591-959
               
               
               Cow position:chr19:56150225-56149859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:243
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):61, 52

               
               
               Conread position:591-960
               
               
               Cow position:chr19:10186346-10186714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 32

               
               
               Conread position:591-960
               
               
               Cow position:chr19:18316832-18317198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:250
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):35, 54

               
               
               Conread position:591-960
               
               
               Cow position:chr19:38500012-38500362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:256
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):120, 21

               
               
               Conread position:592-720
               
               
               Cow position:chr19:25131457-25131588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):34, 121

               
               
               Conread position:592-761
               
               
               Cow position:chr19:14993078-14992913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):130, 113

               
               
               Conread position:592-807
               
               
               Cow position:chr19:18750231-18750018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):34, 82

               
               
               Conread position:592-812
               
               
               Cow position:chr19:31535972-31536189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):129, 33

               
               
               Conread position:592-842
               
               
               Cow position:chr19:20671052-20670814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):15, 32

               
               
               Conread position:592-855
               
               
               Cow position:chr19:9395093-9395348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):34, 118

               
               
               Conread position:592-869
               
               
               Cow position:chr19:6849355-6849074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):27, 113

               
               
               Conread position:592-875
               
               
               Cow position:chr19:50682594-50682322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:592-876
               
               
               Cow position:chr19:34001054-34001334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):111, 31

               
               
               Conread position:592-878
               
               
               Cow position:chr19:53243628-53243351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):27, 58

               
               
               Conread position:592-908
               
               
               Cow position:chr19:33237021-33237338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):264, 125

               
               
               Conread position:592-918
               
               
               Cow position:chr19:23370991-23371316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:221
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):30, 107

               
               
               Conread position:592-930
               
               
               Cow position:chr19:742328-741997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):34, 63

               
               
               Conread position:592-935
               
               
               Cow position:chr19:15068157-15067827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):130, 31

               
               
               Conread position:592-936
               
               
               Cow position:chr19:50025730-50026069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:234
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):31, 56

               
               
               Conread position:592-938
               
               
               Cow position:chr19:1000771-1000430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:231
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):34, 127

               
               
               Conread position:592-938
               
               
               Cow position:chr19:11724672-11724334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):146, 98

               
               
               Conread position:592-941
               
               
               Cow position:chr19:17972411-17972081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):131, 31

               
               
               Conread position:592-941
               
               
               Cow position:chr19:28014326-28014670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 52

               
               
               Conread position:592-944
               
               
               Cow position:chr19:2690352-2690020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):196, 103

               
               
               Conread position:592-945
               
               
               Cow position:chr19:33033596-33033252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:250
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):125, 31

               
               
               Conread position:592-949
               
               
               Cow position:chr19:23005518-23005163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:248
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):34, 105

               
               
               Conread position:592-949
               
               
               Cow position:chr19:25053830-25053464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):34, 101

               
               
               Conread position:592-949
               
               
               Cow position:chr19:41498160-41497802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):34, 104

               
               
               Conread position:592-950
               
               
               Cow position:chr19:10080914-10081287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:261
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):107, 78

               
               
               Conread position:592-950
               
               
               Cow position:chr19:14347857-14348223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 162

               
               
               Conread position:592-951
               
               
               Cow position:chr19:9531078-9531446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:257
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):28, 118

               
               
               Conread position:592-951
               
               
               Cow position:chr19:33912784-33912429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:246
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):27, 112

               
               
               Conread position:592-951
               
               
               Cow position:chr19:35846744-35847102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:235
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):129, 33

               
               
               Conread position:592-960
               
               
               Cow position:chr19:433281-432916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:239
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):279, 34

               
               
               Conread position:593-766
               
               
               Cow position:chr19:10171847-10172021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):33, 147

               
               
               Conread position:593-766
               
               
               Cow position:chr19:14928810-14928640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):105, 116

               
               
               Conread position:593-766
               
               
               Cow position:chr19:47187209-47187039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):33, 78

               
               
               Conread position:593-813
               
               
               Cow position:chr19:34425429-34425642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):30, 116

               
               
               Conread position:593-876
               
               
               Cow position:chr19:30886241-30886525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):130, 113

               
               
               Conread position:593-878
               
               
               Cow position:chr19:6516106-6516390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):31, 164

               
               
               Conread position:593-879
               
               
               Cow position:chr19:4445774-4445489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):113, 31

               
               
               Conread position:593-907
               
               
               Cow position:chr19:8599472-8599157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):33, 131

               
               
               Conread position:593-916
               
               
               Cow position:chr19:1664344-1664020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):137, 30

               
               
               Conread position:593-918
               
               
               Cow position:chr19:12709968-12709637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):32, 56

               
               
               Conread position:593-930
               
               
               Cow position:chr19:47453282-47453608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):116, 30

               
               
               Conread position:593-937
               
               
               Cow position:chr19:18129406-18129744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:236
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):104, 77

               
               
               Conread position:593-939
               
               
               Cow position:chr19:25855047-25854693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:242
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):30, 239

               
               
               Conread position:593-940
               
               
               Cow position:chr19:10213516-10213854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):130, 30

               
               
               Conread position:593-940
               
               
               Cow position:chr19:38392648-38392995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:233
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):129, 30

               
               
               Conread position:593-941
               
               
               Cow position:chr19:7158878-7158527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:240
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):33, 106

               
               
               Conread position:593-941
               
               
               Cow position:chr19:11191772-11191433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 114

               
               
               Conread position:593-941
               
               
               Cow position:chr19:29368247-29368583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:244
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):59, 30

               
               
               Conread position:593-950
               
               
               Cow position:chr19:8864592-8864941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 112

               
               
               Conread position:593-951
               
               
               Cow position:chr19:254953-254600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:240
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):234, 31

               
               
               Conread position:593-951
               
               
               Cow position:chr19:39385191-39384847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:247
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):32, 57

               
               
               Conread position:593-951
               
               
               Cow position:chr19:51285477-51285836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:245
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):28, 251

               
               
               Conread position:593-959
               
               
               Cow position:chr19:24760038-24759682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 36

               
               
               Conread position:594-715
               
               
               Cow position:chr19:10093139-10093260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):27, 109

               
               
               Conread position:594-753
               
               
               Cow position:chr19:38596466-38596621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):129, 108

               
               
               Conread position:594-874
               
               
               Cow position:chr19:43291895-43292178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):33, 13

               
               
               Conread position:594-941
               
               
               Cow position:chr19:15852795-15853114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:594-945
               
               
               Cow position:chr19:25769512-25769866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):120, 22

               
               
               Conread position:594-949
               
               
               Cow position:chr19:35073605-35073238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:245
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):32, 57

               
               
               Conread position:594-949
               
               
               Cow position:chr19:51621337-51620980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 103

               
               
               Conread position:594-951
               
               
               Cow position:chr19:55957729-55957369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 69

               
               
               Conread position:595-939
               
               
               Cow position:chr19:53623410-53623755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):128, 28

               
               
               Conread position:595-947
               
               
               Cow position:chr19:54942821-54943162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:249
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):33, 42

               
               
               Conread position:595-950
               
               
               Cow position:chr19:6079513-6079153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):25, 116

               
               
               Conread position:595-959
               
               
               Cow position:chr19:48960243-48960600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 122

               
               
               Conread position:595-959
               
               
               Cow position:chr19:53900299-53899933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:246
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):26, 117

               
               
               Conread position:596-937
               
               
               Cow position:chr19:52185920-52185573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):30, 49

               
               
               Conread position:596-946
               
               
               Cow position:chr19:42903857-42904185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:235
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):120, 27

               
               
               Conread position:596-949
               
               
               Cow position:chr19:1650352-1650702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):29, 103

               
               
               Conread position:596-959
               
               
               Cow position:chr19:26753883-26754244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:255
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):24, 69

               
               
               Conread position:596-959
               
               
               Cow position:chr19:28554498-28554147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:244
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):94, 46

               
               
               Conread position:597-820
               
               
               Cow position:chr19:43441016-43441238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):124, 26

               
               
               Conread position:597-842
               
               
               Cow position:chr19:47109889-47110133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):77, 27

               
               
               Conread position:597-875
               
               
               Cow position:chr19:4800593-4800870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):77, 6

               
               
               Conread position:597-937
               
               
               Cow position:chr19:36138707-36139038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):126, 101

               
               
               Conread position:597-941
               
               
               Cow position:chr19:13267343-13267018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:241
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):74, 115

               
               
               Conread position:597-941
               
               
               Cow position:chr19:22043501-22043169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 26

               
               
               Conread position:597-959
               
               
               Cow position:chr19:6417445-6417817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:262
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):124, 27

               
               
               Conread position:598-933
               
               
               Cow position:chr19:55324728-55325045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:221
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):22, 70

               
               
               Conread position:598-935
               
               
               Cow position:chr19:11171370-11171031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:229
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):25, 111

               
               
               Conread position:598-941
               
               
               Cow position:chr19:52158386-52158730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:242
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):108, 25

               
               
               Conread position:598-949
               
               
               Cow position:chr19:2152728-2152386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):25, 112

               
               
               Conread position:599-931
               
               
               Cow position:chr19:39254602-39254260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:600-960
               
               
               Cow position:chr19:8869432-8869781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 75

               
               
               Conread position:601-875
               
               
               Cow position:chr19:31690888-31691158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):101, 108

               
               
               Conread position:602-945
               
               
               Cow position:chr19:15092272-15091953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):100, 21

               
               
               Conread position:603-863
               
               
               Cow position:chr19:29115600-29115856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):117, 21

               
               
               Conread position:603-873
               
               
               Cow position:chr19:8033602-8033872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):104, 20

               
               
               Conread position:604-940
               
               
               Cow position:chr19:33141816-33142150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):119, 101

               
               
               Conread position:604-944
               
               
               Cow position:chr19:12154706-12155055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):119, 102

               
               
               Conread position:604-949
               
               
               Cow position:chr19:31601380-31601710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):32, 93

               
               
               Conread position:604-951
               
               
               Cow position:chr19:54175034-54175369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:242
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):120, 47

               
               
               Conread position:607-949
               
               
               Cow position:chr19:13121414-13121090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:242
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):95, 69

               
               
               Conread position:608-949
               
               
               Cow position:chr19:22992531-22992193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):18, 42

               
               
               Conread position:609-937
               
               
               Cow position:chr19:52750898-52750575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):117, 93

               
               
               Conread position:609-954
               
               
               Cow position:chr19:25035348-25035704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:248
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):114, 14

               
               
               Conread position:611-949
               
               
               Cow position:chr19:33518953-33518614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:227
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):15, 108

               
               
               Conread position:611-960
               
               
               Cow position:chr19:27940247-27940587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):15, 46

               
               
               Conread position:612-949
               
               
               Cow position:chr19:25645759-25646097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):12, 106

               
               
               Conread position:612-959
               
               
               Cow position:chr19:1791848-1791487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:252
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):12, 96

               
               
               Conread position:613-949
               
               
               Cow position:chr19:23084722-23085054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):12, 32

               
               
               Conread position:613-958
               
               
               Cow position:chr19:28924624-28924967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:243
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):117, 84

               
               
               Conread position:618-786
               
               
               Cow position:chr19:12093874-12094047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):94, 7

               
               
               Conread position:618-879
               
               
               Cow position:chr19:52196578-52196836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):87, 94

               
               
               Conread position:618-949
               
               
               Cow position:chr19:11110862-11110533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 88

               
               
               Conread position:619-929
               
               
               Cow position:chr19:42517386-42517078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):83, 91

               
               
               Conread position:619-949
               
               
               Cow position:chr19:20666198-20665871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:215
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):123, 17

               
               
               Conread position:619-951
               
               
               Cow position:chr19:23378558-23378878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:232
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):322, 87

               
               
               Conread position:620-955
               
               
               Cow position:chr19:39664707-39664372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:232
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):54, 47

               
               
               Conread position:621-949
               
               
               Cow position:chr19:55160666-55160986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):213, 38

               
               
               Conread position:622-950
               
               
               Cow position:chr19:23784539-23784232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):23, 50

               
               
               Conread position:624-929
               
               
               Cow position:chr19:55431102-55431410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):75, 47

               
               
               Conread position:624-951
               
               
               Cow position:chr19:2221202-2220876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 319

               
               
               Conread position:624-955
               
               
               Cow position:chr19:51751293-51750963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):67, 17

               
               
               Conread position:625-950
               
               
               Cow position:chr19:39801755-39802097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):77, 143

               
               
               Conread position:626-874
               
               
               Cow position:chr19:49457252-49457015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:626-949
               
               
               Cow position:chr19:6278061-6278384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 80

               
               
               Conread position:627-842
               
               
               Cow position:chr19:750089-750298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:627-902
               
               
               Cow position:chr19:25397573-25397850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):95, 70

               
               
               Conread position:627-952
               
               
               Cow position:chr19:25570484-25570791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:223
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):103, 34

               
               
               Conread position:629-927
               
               
               Cow position:chr19:10929322-10929620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):94, 73

               
               
               Conread position:629-930
               
               
               Cow position:chr19:23394667-23394962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):74, 19

               
               
               Conread position:630-930
               
               
               Cow position:chr19:43189810-43190106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:217
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):100, 31

               
               
               Conread position:630-941
               
               
               Cow position:chr19:24453627-24453320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:214
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):94, 67

               
               
               Conread position:630-941
               
               
               Cow position:chr19:51352094-51351802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:210
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):67, 79

               
               
               Conread position:631-894
               
               
               Cow position:chr19:34819306-34819044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):75, 19

               
               
               Conread position:631-949
               
               
               Cow position:chr19:729861-729552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 75

               
               
               Conread position:632-896
               
               
               Cow position:chr19:47986740-47987000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):90, 230

               
               
               Conread position:633-927
               
               
               Cow position:chr19:31652446-31652735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):216, 64

               
               
               Conread position:634-941
               
               
               Cow position:chr19:56061310-56061008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):96, 45

               
               
               Conread position:636-882
               
               
               Cow position:chr19:39649186-39648948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):86, 14

               
               
               Conread position:636-927
               
               
               Cow position:chr19:18826673-18826386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):81, 50

               
               
               Conread position:636-929
               
               
               Cow position:chr19:26022577-26022284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):21, 71

               
               
               Conread position:637-870
               
               
               Cow position:chr19:25142984-25143216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:643-951
               
               
               Cow position:chr19:51194137-51194441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):7, 66

               
               
               Conread position:645-956
               
               
               Cow position:chr19:18054348-18054055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):303, 52

               
               
               Conread position:650-940
               
               
               Cow position:chr19:14632133-14631854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):71, 47

               
               
               Conread position:650-943
               
               
               Cow position:chr19:16105180-16104893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):193, 0

               
               
               Conread position:650-951
               
               
               Cow position:chr19:52458622-52458324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):7, 48

               
               
               Conread position:650-951
               
               
               Cow position:chr19:55247540-55247831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):74, 20

               
               
               Conread position:651-960
               
               
               Cow position:chr19:39583844-39584153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):79, 58

               
               
               Conread position:652-937
               
               
               Cow position:chr19:3498049-3497763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):6, 14

               
               
               Conread position:652-937
               
               
               Cow position:chr19:55583432-55583720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):71, 38

               
               
               Conread position:652-949
               
               
               Cow position:chr19:33758346-33758048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):74, 44

               
               
               Conread position:652-950
               
               
               Cow position:chr19:6867457-6867159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):90, 63

               
               
               Conread position:653-941
               
               
               Cow position:chr19:40127261-40126977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:653-949
               
               
               Cow position:chr19:32453161-32452870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:200
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):66, 42

               
               
               Conread position:653-950
               
               
               Cow position:chr19:38410774-38411066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:215
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):137, 56

               
               
               Conread position:653-951
               
               
               Cow position:chr19:7148160-7147855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):67, 37

               
               
               Conread position:654-958
               
               
               Cow position:chr19:43413686-43413985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:222
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):50, 16

               
               
               Conread position:656-949
               
               
               Cow position:chr19:4297591-4297881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):43, 51

               
               
               Conread position:656-949
               
               
               Cow position:chr19:17776090-17776374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:658-941
               
               
               Cow position:chr19:33575433-33575707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):65, 39

               
               
               Conread position:658-949
               
               
               Cow position:chr19:33747756-33748048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):39, 262

               
               
               Conread position:658-951
               
               
               Cow position:chr19:35870704-35870983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):44, 59

               
               
               Conread position:661-951
               
               
               Cow position:chr19:12052934-12052649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):218, 25

               
               
               Conread position:661-951
               
               
               Cow position:chr19:12067657-12067942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):218, 25

               
               
               Conread position:662-954
               
               
               Cow position:chr19:4459527-4459239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):68, 35

               
               
               Conread position:663-941
               
               
               Cow position:chr19:34420328-34420597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):60, 51

               
               
               Conread position:664-940
               
               
               Cow position:chr19:4987851-4987579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):16, 53

               
               
               Conread position:664-943
               
               
               Cow position:chr19:25763029-25763293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):37, 26

               
               
               Conread position:665-941
               
               
               Cow position:chr19:37467142-37466873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:666-959
               
               
               Cow position:chr19:32031328-32031034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):76, 49

               
               
               Conread position:668-941
               
               
               Cow position:chr19:6343988-6344270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):13, 112

               
               
               Conread position:669-941
               
               
               Cow position:chr19:42768178-42767915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):54, 33

               
               
               Conread position:670-959
               
               
               Cow position:chr19:30227443-30227729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):272, 32

               
               
               Conread position:673-933
               
               
               Cow position:chr19:13488580-13488326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):25, 42

               
               
               Conread position:673-936
               
               
               Cow position:chr19:28447365-28447622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):240, 29

               
               
               Conread position:673-937
               
               
               Cow position:chr19:8965187-8965455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):52, 96

               
               
               Conread position:673-941
               
               
               Cow position:chr19:8245251-8244983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):53, 42

               
               
               Conread position:673-941
               
               
               Cow position:chr19:47185157-47184892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:184
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):26, 41

               
               
               Conread position:673-944
               
               
               Cow position:chr19:6309992-6309731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):57, 32

               
               
               Conread position:673-954
               
               
               Cow position:chr19:11194838-11194563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):13, 51

               
               
               Conread position:673-959
               
               
               Cow position:chr19:11560118-11559827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):50, 42

               
               
               Conread position:674-947
               
               
               Cow position:chr19:18505240-18504972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:184
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):43, 11

               
               
               Conread position:674-959
               
               
               Cow position:chr19:42235953-42236251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):56, 23

               
               
               Conread position:675-958
               
               
               Cow position:chr19:43372971-43373252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):193, 34

               
               
               Conread position:675-959
               
               
               Cow position:chr19:39758448-39758727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):27, 49

               
               
               Conread position:676-927
               
               
               Cow position:chr19:33913452-33913704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):32, 40

               
               
               Conread position:676-950
               
               
               Cow position:chr19:13933366-13933642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):48, 32

               
               
               Conread position:676-959
               
               
               Cow position:chr19:12645715-12645443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):49, 26

               
               
               Conread position:678-949
               
               
               Cow position:chr19:52223310-52223578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:680-959
               
               
               Cow position:chr19:29468621-29468905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):43, 35

               
               
               Conread position:681-928
               
               
               Cow position:chr19:33987997-33988244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):22, 118

               
               
               Conread position:682-948
               
               
               Cow position:chr19:33636949-33637203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):48, 24

               
               
               Conread position:685-960
               
               
               Cow position:chr19:17354794-17355065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):45, 23

               
               
               Conread position:695-941
               
               
               Cow position:chr19:19489887-19489630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):28, 19

               
               
               Conread position:695-941
               
               
               Cow position:chr19:23087930-23088169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):28, 15

               
               
               Conread position:695-941
               
               
               Cow position:chr19:28810373-28810128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):28, 157

               
               
               Conread position:700-950
               
               
               Cow position:chr19:40323767-40324019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:702-949
               
               
               Cow position:chr19:39795143-39795385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):66, 19

               
               
               Conread position:705-937
               
               
               Cow position:chr19:49221667-49221438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):18, 148

               
               
               Conread position:706-959
               
               
               Cow position:chr19:55756023-55756270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):11, 148

               
               
               Conread position:709-941
               
               
               Cow position:chr19:26269270-26269037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):14, 36

               
               
               Conread position:709-949
               
               
               Cow position:chr19:51237928-51237691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):144, 6

               
               
               Conread position:710-958
               
               
               Cow position:chr19:10735199-10734957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):15, 66

               
               
               Conread position:710-958
               
               
               Cow position:chr19:23889528-23889283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):12, 145

               
               
               Conread position:710-958
               
               
               Cow position:chr19:34758043-34757783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:711-929
               
               
               Cow position:chr19:17824514-17824304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):79, 11

               
               
               Conread position:711-952
               
               
               Cow position:chr19:34608237-34608003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):19, 54

               
               
               Conread position:711-959
               
               
               Cow position:chr19:2068227-2068469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):19, 142

               
               
               Conread position:711-959
               
               
               Cow position:chr19:38732099-38732346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):12, 148

               
               
               Conread position:714-945
               
               
               Cow position:chr19:35920816-35921043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:714-959
               
               
               Cow position:chr19:30007155-30007390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):16, 110

               
               
               Conread position:715-949
               
               
               Cow position:chr19:7674228-7674463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:718-959
               
               
               Cow position:chr19:8185172-8185408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:719-927
               
               
               Cow position:chr19:35444536-35444330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):138, 28

               
               
               Conread position:723-959
               
               
               Cow position:chr19:27966173-27965937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):215, 40

               
               
               Conread position:724-941
               
               
               Cow position:chr19:44572057-44572276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):132, 45

               
               
               Conread position:724-951
               
               
               Cow position:chr19:41489113-41488887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:726-941
               
               
               Cow position:chr19:35245918-35246133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:726-944
               
               
               Cow position:chr19:20379056-20378844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):116, 125

               
               
               Conread position:726-950
               
               
               Cow position:chr19:38021420-38021639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:727-951
               
               
               Cow position:chr19:52728589-52728810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):219, 141

               
               
               Conread position:729-935
               
               
               Cow position:chr19:20437245-20437450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):202, 9

               
               
               Conread position:729-945
               
               
               Cow position:chr19:24692987-24693196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:730-941
               
               
               Cow position:chr19:11646547-11646752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:731-940
               
               
               Cow position:chr19:25832218-25832013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):178, 114

               
               
               Conread position:731-951
               
               
               Cow position:chr19:39981717-39981939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):15, 77

               
               
               Conread position:734-945
               
               
               Cow position:chr19:31763475-31763688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):78, 167

               
               
               Conread position:735-955
               
               
               Cow position:chr19:10574284-10574064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:736-949
               
               
               Cow position:chr19:22959888-22959674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):38, 10

               
               
               Conread position:739-927
               
               
               Cow position:chr19:25927420-25927236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):42, 112

               
               
               Conread position:741-929
               
               
               Cow position:chr19:18515676-18515863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):122, 69

               
               
               Conread position:741-949
               
               
               Cow position:chr19:2784578-2784371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):69, 17

               
               
               Conread position:741-958
               
               
               Cow position:chr19:15988006-15987786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:742-949
               
               
               Cow position:chr19:5522163-5521961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):198, 119

               
               
               Conread position:745-945
               
               
               Cow position:chr19:36978262-36978463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):99, 85

               
               
               Conread position:747-937
               
               
               Cow position:chr19:15076203-15076007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:747-941
               
               
               Cow position:chr19:52356249-52356440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:747-949
               
               
               Cow position:chr19:12761106-12760904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:747-959
               
               
               Cow position:chr19:14581360-14581565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):193, 35

               
               
               Conread position:748-955
               
               
               Cow position:chr19:37420786-37420992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):20, 28

               
               
               Conread position:748-958
               
               
               Cow position:chr19:51294287-51294080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:751-949
               
               
               Cow position:chr19:5261334-5261536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):67, 76

               
               
               Conread position:756-959
               
               
               Cow position:chr19:1900723-1900519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):110, 34

               
               
               Conread position:757-949
               
               
               Cow position:chr19:12801540-12801349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):73, 65

               
               
               Conread position:757-951
               
               
               Cow position:chr19:12945299-12945106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):163, 133

               
               
               Conread position:763-948
               
               
               Cow position:chr19:30385080-30384902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:766-927
               
               
               Cow position:chr19:42868031-42868192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:766-942
               
               
               Cow position:chr19:36191268-36191441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):18, 47

               
               
               Conread position:773-929
               
               
               Cow position:chr19:18984170-18984331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:773-941
               
               
               Cow position:chr19:7558568-7558734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:773-941
               
               
               Cow position:chr19:10528264-10528096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:773-941
               
               
               Cow position:chr19:41187862-41188024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:773-945
               
               
               Cow position:chr19:29139225-29139397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:773-948
               
               
               Cow position:chr19:12714123-12714297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:773-950
               
               
               Cow position:chr19:26176185-26176009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):170, 0

               
               
               Conread position:773-951
               
               
               Cow position:chr19:33609912-33610087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:774-935
               
               
               Cow position:chr19:39586086-39585922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:774-937
               
               
               Cow position:chr19:38597094-38597251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:774-941
               
               
               Cow position:chr19:4486126-4485960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:774-941
               
               
               Cow position:chr19:21790757-21790920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:774-941
               
               
               Cow position:chr19:53189831-53189662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:774-944
               
               
               Cow position:chr19:20547707-20547536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:774-945
               
               
               Cow position:chr19:42544552-42544722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:774-948
               
               
               Cow position:chr19:30917920-30917747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:774-949
               
               
               Cow position:chr19:2137801-2137632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:774-949
               
               
               Cow position:chr19:14588429-14588601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:774-949
               
               
               Cow position:chr19:33691155-33691335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):95, 72

               
               
               Conread position:774-950
               
               
               Cow position:chr19:22871231-22871059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:774-951
               
               
               Cow position:chr19:17259931-17260109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):59, 77

               
               
               Conread position:774-958
               
               
               Cow position:chr19:4602670-4602490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):171, 78

               
               
               Conread position:774-958
               
               
               Cow position:chr19:27968672-27968489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:774-958
               
               
               Cow position:chr19:41946740-41946928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):33, 98

               
               
               Conread position:775-937
               
               
               Cow position:chr19:39698311-39698471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:775-937
               
               
               Cow position:chr19:51637065-51637229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:775-941
               
               
               Cow position:chr19:14596714-14596883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):59, 43

               
               
               Conread position:775-949
               
               
               Cow position:chr19:35073028-35072855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:775-950
               
               
               Cow position:chr19:11211257-11211077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:775-951
               
               
               Cow position:chr19:6854943-6855115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:775-951
               
               
               Cow position:chr19:7794678-7794848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:775-951
               
               
               Cow position:chr19:22414241-22414068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):167, 83

               
               
               Conread position:775-956
               
               
               Cow position:chr19:31729288-31729469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:775-959
               
               
               Cow position:chr19:4537239-4537058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):167, 122

               
               
               Conread position:776-956
               
               
               Cow position:chr19:19468409-19468591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):12, 77

               
               
               Conread position:776-958
               
               
               Cow position:chr19:46822735-46822914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:776-960
               
               
               Cow position:chr19:55742259-55742075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):129, 134

               
               
               Conread position:777-925
               
               
               Cow position:chr19:40650811-40650957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:778-960
               
               
               Cow position:chr19:30541535-30541357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):127, 24

               
               
               Conread position:780-949
               
               
               Cow position:chr19:12497039-12497203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):166, 10

               
               
               Conread position:780-952
               
               
               Cow position:chr19:23831373-23831548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:780-955
               
               
               Cow position:chr19:24068254-24068080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):163, 0

               
               
               Conread position:781-941
               
               
               Cow position:chr19:4586516-4586361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:781-942
               
               
               Cow position:chr19:28699920-28699762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:781-958
               
               
               Cow position:chr19:41718933-41718758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):80, 61

               
               
               Conread position:782-941
               
               
               Cow position:chr19:23416851-23416692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:782-941
               
               
               Cow position:chr19:49290425-49290270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:782-947
               
               
               Cow position:chr19:41089588-41089421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:782-955
               
               
               Cow position:chr19:42776464-42776638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):164, 19

               
               
               Conread position:782-959
               
               
               Cow position:chr19:19738032-19738210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):171, 0

               
               
               Conread position:782-959
               
               
               Cow position:chr19:23297766-23297943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-939
               
               
               Cow position:chr19:14545347-14545503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:784-945
               
               
               Cow position:chr19:4339607-4339438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:787-944
               
               
               Cow position:chr19:6021045-6020888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:787-960
               
               
               Cow position:chr19:55385830-55386003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:788-959
               
               
               Cow position:chr19:54105491-54105667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):152, 0

               
               
               Conread position:790-925
               
               
               Cow position:chr19:18051123-18050990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:790-954
               
               
               Cow position:chr19:41388802-41388963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):153, 51

               
               
               Conread position:790-959
               
               
               Cow position:chr19:42217276-42217107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):64, 90

               
               
               Conread position:791-941
               
               
               Cow position:chr19:8603376-8603529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:794-955
               
               
               Cow position:chr19:52412362-52412202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:794-959
               
               
               Cow position:chr19:14135534-14135369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:807-945
               
               
               Cow position:chr19:22838315-22838453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:104
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):24, 35

               
               
               Conread position:811-959
               
               
               Cow position:chr19:16686923-16686777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:812-941
               
               
               Cow position:chr19:38637725-38637596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:99
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:815-949
               
               
               Cow position:chr19:4328810-4328677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:817-952
               
               
               Cow position:chr19:13439538-13439673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:103
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:826-959
               
               
               Cow position:chr19:55392224-55392091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:100
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:836-951
               
               
               Cow position:chr19:6477994-6478110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):25, 72

               
               
               Conread position:859-956
               
               
               Cow position:chr19:35605349-35605252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:81
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:511-933
               
               
               Cow position:chr2:1762576-1762981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:279
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):50, 9

               
               
               Conread position:544-929
               
               
               Cow position:chr2:32351121-32350741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:263
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):19, 7

               
               
               Conread position:551-938
               
               
               Cow position:chr2:33988497-33988110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):298, 74

               
               
               Conread position:556-761
               
               
               Cow position:chr2:77378063-77378267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):15, 71

               
               
               Conread position:556-839
               
               
               Cow position:chr2:70945225-70945505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):8, 31

               
               
               Conread position:558-824
               
               
               Cow position:chr2:80866030-80865768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):139, 13

               
               
               Conread position:562-941
               
               
               Cow position:chr2:18858314-18857957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):162, 10

               
               
               Conread position:562-941
               
               
               Cow position:chr2:33251255-33250888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:266
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):13, 7

               
               
               Conread position:562-951
               
               
               Cow position:chr2:76314039-76313657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 7

               
               
               Conread position:565-762
               
               
               Cow position:chr2:85498969-85498770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):66, 146

               
               
               Conread position:565-877
               
               
               Cow position:chr2:38273370-38273689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:226
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):29, 259

               
               
               Conread position:566-753
               
               
               Cow position:chr2:80797503-80797680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):156, 23

               
               
               Conread position:566-767
               
               
               Cow position:chr2:21284766-21284962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):160, 19

               
               
               Conread position:566-820
               
               
               Cow position:chr2:36105098-36105352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):156, 58

               
               
               Conread position:566-848
               
               
               Cow position:chr2:39263316-39263597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):26, 74

               
               
               Conread position:566-875
               
               
               Cow position:chr2:5130626-5130318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):9, 104

               
               
               Conread position:566-875
               
               
               Cow position:chr2:25597662-25597360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:566-937
               
               
               Cow position:chr2:66480357-66480004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:244
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):156, 49

               
               
               Conread position:566-941
               
               
               Cow position:chr2:13000750-13001115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:248
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):60, 17

               
               
               Conread position:566-941
               
               
               Cow position:chr2:13001636-13001996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:257
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):26, 59

               
               
               Conread position:566-941
               
               
               Cow position:chr2:19494041-19494414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 19

               
               
               Conread position:566-941
               
               
               Cow position:chr2:51594593-51594971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 59

               
               
               Conread position:566-941
               
               
               Cow position:chr2:76110223-76110591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:258
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):27, 125

               
               
               Conread position:566-948
               
               
               Cow position:chr2:73637350-73636963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:262
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):27, 121

               
               
               Conread position:566-949
               
               
               Cow position:chr2:37009246-37009613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:259
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):26, 58

               
               
               Conread position:566-950
               
               
               Cow position:chr2:47116085-47115693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:261
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):21, 58

               
               
               Conread position:566-950
               
               
               Cow position:chr2:49467451-49467838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 146

               
               
               Conread position:566-952
               
               
               Cow position:chr2:14710278-14709919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:265
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):31, 107

               
               
               Conread position:566-956
               
               
               Cow position:chr2:47090592-47090982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:272
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):22, 84

               
               
               Conread position:566-959
               
               
               Cow position:chr2:60462988-60462613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:264
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):158, 19

               
               
               Conread position:566-959
               
               
               Cow position:chr2:60468367-60467992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:266
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):158, 19

               
               
               Conread position:566-959
               
               
               Cow position:chr2:67301863-67302234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:267
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):60, 78

               
               
               Conread position:569-882
               
               
               Cow position:chr2:6697662-6697359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):24, 50

               
               
               Conread position:569-941
               
               
               Cow position:chr2:31783770-31784128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:257
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):23, 55

               
               
               Conread position:569-941
               
               
               Cow position:chr2:54654784-54654414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):19, 48

               
               
               Conread position:569-942
               
               
               Cow position:chr2:14218478-14218855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 59

               
               
               Conread position:569-958
               
               
               Cow position:chr2:33554333-33553958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:269
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):6, 35

               
               
               Conread position:571-950
               
               
               Cow position:chr2:47403038-47403420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:253
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):14, 97

               
               
               Conread position:572-876
               
               
               Cow position:chr2:43907348-43907051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:217
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):25, 9

               
               
               Conread position:574-766
               
               
               Cow position:chr2:62978833-62978645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):19, 52

               
               
               Conread position:574-817
               
               
               Cow position:chr2:21416145-21416376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:574-846
               
               
               Cow position:chr2:44551005-44550741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):19, 101

               
               
               Conread position:574-861
               
               
               Cow position:chr2:46375094-46374820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):27, 53

               
               
               Conread position:574-940
               
               
               Cow position:chr2:6267937-6267567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:250
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):25, 144

               
               
               Conread position:574-941
               
               
               Cow position:chr2:59992407-59992049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:243
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):19, 138

               
               
               Conread position:574-941
               
               
               Cow position:chr2:70674564-70674940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:258
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):23, 136

               
               
               Conread position:574-942
               
               
               Cow position:chr2:46312288-46312636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:256
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):32, 52

               
               
               Conread position:574-947
               
               
               Cow position:chr2:56937516-56937881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 98

               
               
               Conread position:574-948
               
               
               Cow position:chr2:19212212-19211854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 22

               
               
               Conread position:574-948
               
               
               Cow position:chr2:72004104-72003741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:247
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):57, 22

               
               
               Conread position:574-949
               
               
               Cow position:chr2:33532116-33531737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 145

               
               
               Conread position:574-950
               
               
               Cow position:chr2:17328585-17328953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 118

               
               
               Conread position:574-952
               
               
               Cow position:chr2:64323082-64323448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:252
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):55, 11

               
               
               Conread position:574-958
               
               
               Cow position:chr2:21003017-21003385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:265
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):18, 50

               
               
               Conread position:575-859
               
               
               Cow position:chr2:28303159-28303440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):17, 129

               
               
               Conread position:575-951
               
               
               Cow position:chr2:13369495-13369867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 50

               
               
               Conread position:575-958
               
               
               Cow position:chr2:86490782-86490426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:255
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):17, 51

               
               
               Conread position:576-820
               
               
               Cow position:chr2:3309186-3308945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):48, 11

               
               
               Conread position:576-875
               
               
               Cow position:chr2:30112860-30113154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):145, 15

               
               
               Conread position:576-886
               
               
               Cow position:chr2:46294193-46293903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:576-939
               
               
               Cow position:chr2:42364876-42365241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:248
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):101, 11

               
               
               Conread position:576-941
               
               
               Cow position:chr2:41088272-41087906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:262
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):126, 9

               
               
               Conread position:576-941
               
               
               Cow position:chr2:79837867-79837523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:248
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:576-944
               
               
               Cow position:chr2:36136852-36137215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:245
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):18, 13

               
               
               Conread position:576-950
               
               
               Cow position:chr2:35664553-35664921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:252
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):44, 15

               
               
               Conread position:576-956
               
               
               Cow position:chr2:18621254-18621629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:265
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):146, 15

               
               
               Conread position:576-956
               
               
               Cow position:chr2:82957521-82957899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 15

               
               
               Conread position:576-958
               
               
               Cow position:chr2:46942517-46942141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:245
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):182, 15

               
               
               Conread position:577-687
               
               
               Cow position:chr2:80904086-80903976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:91
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):10, 47

               
               
               Conread position:577-696
               
               
               Cow position:chr2:29716986-29716868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:93
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:577-751
               
               
               Cow position:chr2:46353653-46353473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):15, 48

               
               
               Conread position:577-753
               
               
               Cow position:chr2:36007744-36007571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):15, 48

               
               
               Conread position:577-759
               
               
               Cow position:chr2:58248033-58247854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):15, 106

               
               
               Conread position:577-809
               
               
               Cow position:chr2:29268902-29269143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):125, 19

               
               
               Conread position:577-830
               
               
               Cow position:chr2:45665872-45666125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):15, 47

               
               
               Conread position:577-866
               
               
               Cow position:chr2:32403132-32402840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):15, 91

               
               
               Conread position:577-866
               
               
               Cow position:chr2:44482804-44482527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):230, 24

               
               
               Conread position:577-875
               
               
               Cow position:chr2:9687739-9687429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):15, 112

               
               
               Conread position:577-875
               
               
               Cow position:chr2:81927696-81927984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):146, 47

               
               
               Conread position:577-880
               
               
               Cow position:chr2:36017573-36017272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):27, 8

               
               
               Conread position:577-883
               
               
               Cow position:chr2:69823427-69823734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:209
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):15, 127

               
               
               Conread position:577-896
               
               
               Cow position:chr2:53430567-53430873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:228
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):15, 125

               
               
               Conread position:577-910
               
               
               Cow position:chr2:60923136-60922819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):15, 129

               
               
               Conread position:577-945
               
               
               Cow position:chr2:45784572-45784953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:257
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):10, 47

               
               
               Conread position:577-948
               
               
               Cow position:chr2:12686945-12686583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 86

               
               
               Conread position:577-948
               
               
               Cow position:chr2:31750128-31749760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 134

               
               
               Conread position:577-948
               
               
               Cow position:chr2:80115945-80116304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 14

               
               
               Conread position:577-949
               
               
               Cow position:chr2:13354516-13354888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 129

               
               
               Conread position:577-949
               
               
               Cow position:chr2:43130959-43131306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:261
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):49, 8

               
               
               Conread position:577-950
               
               
               Cow position:chr2:46227307-46227673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 47

               
               
               Conread position:577-951
               
               
               Cow position:chr2:26851003-26851362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 11

               
               
               Conread position:577-951
               
               
               Cow position:chr2:36575582-36575944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:253
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:577-951
               
               
               Cow position:chr2:36963372-36963730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:263
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):15, 75

               
               
               Conread position:577-951
               
               
               Cow position:chr2:38662838-38662485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:262
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):10, 49

               
               
               Conread position:578-875
               
               
               Cow position:chr2:32408649-32408372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):9, 14

               
               
               Conread position:579-782
               
               
               Cow position:chr2:38628752-38628953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):143, 6

               
               
               Conread position:579-941
               
               
               Cow position:chr2:387935-387576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):13, 127

               
               
               Conread position:580-855
               
               
               Cow position:chr2:17410157-17409890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:580-949
               
               
               Cow position:chr2:23712725-23713082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):17, 77

               
               
               Conread position:580-950
               
               
               Cow position:chr2:73094942-73094596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:261
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):142, 5

               
               
               Conread position:581-720
               
               
               Cow position:chr2:41525873-41525738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):11, 66

               
               
               Conread position:581-736
               
               
               Cow position:chr2:78219942-78220097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):11, 47

               
               
               Conread position:581-742
               
               
               Cow position:chr2:51824772-51824929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):141, 7

               
               
               Conread position:581-752
               
               
               Cow position:chr2:45469853-45470021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):45, 77

               
               
               Conread position:581-812
               
               
               Cow position:chr2:41461213-41461443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):11, 44

               
               
               Conread position:581-842
               
               
               Cow position:chr2:14089628-14089897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):7, 43

               
               
               Conread position:581-842
               
               
               Cow position:chr2:50277869-50278126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):11, 71

               
               
               Conread position:581-848
               
               
               Cow position:chr2:30816804-30817078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):11, 166

               
               
               Conread position:581-848
               
               
               Cow position:chr2:48361416-48361682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:581-870
               
               
               Cow position:chr2:62644434-62644724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):141, 121

               
               
               Conread position:581-903
               
               
               Cow position:chr2:20900619-20900298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 105

               
               
               Conread position:581-906
               
               
               Cow position:chr2:192614-192301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:223
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):11, 50

               
               
               Conread position:581-937
               
               
               Cow position:chr2:43624682-43624344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:251
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:581-939
               
               
               Cow position:chr2:45575149-45574811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:243
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:581-939
               
               
               Cow position:chr2:61421328-61420960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):11, 130

               
               
               Conread position:581-941
               
               
               Cow position:chr2:24271074-24271414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:251
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):5, 125

               
               
               Conread position:581-941
               
               
               Cow position:chr2:65928992-65928640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:246
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):170, 48

               
               
               Conread position:581-945
               
               
               Cow position:chr2:46351920-46351579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:249
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:581-949
               
               
               Cow position:chr2:37791655-37791285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):30, 18

               
               
               Conread position:581-951
               
               
               Cow position:chr2:33262772-33262420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:256
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:581-957
               
               
               Cow position:chr2:26443142-26442769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):177, 30

               
               
               Conread position:581-959
               
               
               Cow position:chr2:40484676-40484286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:250
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:582-867
               
               
               Cow position:chr2:12558683-12558404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):113, 141

               
               
               Conread position:582-937
               
               
               Cow position:chr2:46052354-46052696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:253
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):141, 41

               
               
               Conread position:582-948
               
               
               Cow position:chr2:27178503-27178853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:252
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:582-950
               
               
               Cow position:chr2:1303796-1304160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:255
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):140, 57

               
               
               Conread position:584-842
               
               
               Cow position:chr2:39564206-39564457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):140, 33

               
               
               Conread position:584-941
               
               
               Cow position:chr2:17967180-17966842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 39

               
               
               Conread position:584-941
               
               
               Cow position:chr2:56351068-56350712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 71

               
               
               Conread position:584-941
               
               
               Cow position:chr2:67479828-67480187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:255
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):43, 87

               
               
               Conread position:585-788
               
               
               Cow position:chr2:19594566-19594772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):41, 60

               
               
               Conread position:585-795
               
               
               Cow position:chr2:61974649-61974854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):135, 38

               
               
               Conread position:585-830
               
               
               Cow position:chr2:5998795-5999039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):7, 23

               
               
               Conread position:585-841
               
               
               Cow position:chr2:47808579-47808837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):141, 87

               
               
               Conread position:585-842
               
               
               Cow position:chr2:50580222-50580466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):52, 114

               
               
               Conread position:585-842
               
               
               Cow position:chr2:82262529-82262272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):45, 118

               
               
               Conread position:585-874
               
               
               Cow position:chr2:47624551-47624271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:585-918
               
               
               Cow position:chr2:74353745-74354080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:225
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):41, 112

               
               
               Conread position:585-933
               
               
               Cow position:chr2:61962603-61962272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):38, 63

               
               
               Conread position:585-937
               
               
               Cow position:chr2:13582432-13582786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 38

               
               
               Conread position:585-937
               
               
               Cow position:chr2:15674396-15674725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:585-941
               
               
               Cow position:chr2:827758-827420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):124, 24

               
               
               Conread position:585-941
               
               
               Cow position:chr2:26438875-26438529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 54

               
               
               Conread position:585-941
               
               
               Cow position:chr2:38965473-38965809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:252
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):117, 38

               
               
               Conread position:586-928
               
               
               Cow position:chr2:77157497-77157160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:237
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):117, 37

               
               
               Conread position:588-866
               
               
               Cow position:chr2:45439295-45439562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):134, 38

               
               
               Conread position:588-949
               
               
               Cow position:chr2:51855887-51855531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):38, 111

               
               
               Conread position:589-941
               
               
               Cow position:chr2:40728207-40728559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):37, 7

               
               
               Conread position:591-699
               
               
               Cow position:chr2:70746653-70746761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:88
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:591-706
               
               
               Cow position:chr2:6884078-6884195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:591-706
               
               
               Cow position:chr2:47152679-47152562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:591-708
               
               
               Cow position:chr2:17493463-17493343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:98
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):95, 32

               
               
               Conread position:591-713
               
               
               Cow position:chr2:45537579-45537455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:100
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):61, 40

               
               
               Conread position:591-736
               
               
               Cow position:chr2:76122608-76122461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):38, 102

               
               
               Conread position:591-748
               
               
               Cow position:chr2:13543878-13544034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):35, 87

               
               
               Conread position:591-750
               
               
               Cow position:chr2:66563377-66563219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):35, 108

               
               
               Conread position:591-752
               
               
               Cow position:chr2:21407776-21407937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):29, 50

               
               
               Conread position:591-752
               
               
               Cow position:chr2:23493393-23493551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):56, 46

               
               
               Conread position:591-752
               
               
               Cow position:chr2:23847969-23847811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):131, 33

               
               
               Conread position:591-752
               
               
               Cow position:chr2:56102610-56102440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:591-753
               
               
               Cow position:chr2:20940296-20940455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):131, 77

               
               
               Conread position:591-753
               
               
               Cow position:chr2:45311267-45311104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):116, 36

               
               
               Conread position:591-753
               
               
               Cow position:chr2:64473782-64473624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):133, 115

               
               
               Conread position:591-755
               
               
               Cow position:chr2:27076572-27076727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:591-757
               
               
               Cow position:chr2:55480382-55480219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):123, 77

               
               
               Conread position:591-759
               
               
               Cow position:chr2:68716813-68716647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-791
               
               
               Cow position:chr2:1755891-1756094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):105, 35

               
               
               Conread position:591-793
               
               
               Cow position:chr2:45880922-45880721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):111, 33

               
               
               Conread position:591-799
               
               
               Cow position:chr2:34535301-34535096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):36, 14

               
               
               Conread position:591-809
               
               
               Cow position:chr2:42936354-42936138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):139, 33

               
               
               Conread position:591-809
               
               
               Cow position:chr2:58056922-58057131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:591-809
               
               
               Cow position:chr2:76764848-76764639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-812
               
               
               Cow position:chr2:11696989-11697200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):177, 35

               
               
               Conread position:591-812
               
               
               Cow position:chr2:16564542-16564752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):35, 115

               
               
               Conread position:591-813
               
               
               Cow position:chr2:47055764-47055982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):106, 79

               
               
               Conread position:591-820
               
               
               Cow position:chr2:8355086-8354866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):132, 33

               
               
               Conread position:591-824
               
               
               Cow position:chr2:53532952-53532726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-831
               
               
               Cow position:chr2:52344610-52344844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):41, 28

               
               
               Conread position:591-832
               
               
               Cow position:chr2:30144578-30144810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):79, 32

               
               
               Conread position:591-832
               
               
               Cow position:chr2:42226411-42226168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):106, 11

               
               
               Conread position:591-834
               
               
               Cow position:chr2:988550-988784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):111, 33

               
               
               Conread position:591-841
               
               
               Cow position:chr2:48864123-48863888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):230, 16

               
               
               Conread position:591-842
               
               
               Cow position:chr2:25448186-25448432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):108, 28

               
               
               Conread position:591-842
               
               
               Cow position:chr2:41184917-41185162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):132, 34

               
               
               Conread position:591-842
               
               
               Cow position:chr2:44081292-44081540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):125, 34

               
               
               Conread position:591-844
               
               
               Cow position:chr2:36436061-36436313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):129, 33

               
               
               Conread position:591-847
               
               
               Cow position:chr2:47990291-47990546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):131, 115

               
               
               Conread position:591-848
               
               
               Cow position:chr2:7573644-7573395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):61, 13

               
               
               Conread position:591-848
               
               
               Cow position:chr2:44232596-44232343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):38, 114

               
               
               Conread position:591-848
               
               
               Cow position:chr2:54789629-54789884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):21, 33

               
               
               Conread position:591-853
               
               
               Cow position:chr2:32416999-32416745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):176, 32

               
               
               Conread position:591-853
               
               
               Cow position:chr2:69747763-69747501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-854
               
               
               Cow position:chr2:70163457-70163715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):128, 50

               
               
               Conread position:591-855
               
               
               Cow position:chr2:549472-549213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-855
               
               
               Cow position:chr2:46230907-46230646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):35, 117

               
               
               Conread position:591-855
               
               
               Cow position:chr2:46244166-46243907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):35, 137

               
               
               Conread position:591-855
               
               
               Cow position:chr2:47644910-47645163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:179
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):52, 5

               
               
               Conread position:591-860
               
               
               Cow position:chr2:14854171-14854426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:591-860
               
               
               Cow position:chr2:41954739-41955007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):111, 126

               
               
               Conread position:591-860
               
               
               Cow position:chr2:70539519-70539250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):29, 106

               
               
               Conread position:591-860
               
               
               Cow position:chr2:81388548-81388812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):140, 32

               
               
               Conread position:591-862
               
               
               Cow position:chr2:10655996-10655732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:184
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):131, 33

               
               
               Conread position:591-862
               
               
               Cow position:chr2:26102636-26102891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:591-864
               
               
               Cow position:chr2:80963791-80963523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:200
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):131, 111

               
               
               Conread position:591-865
               
               
               Cow position:chr2:39584310-39584575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):130, 32

               
               
               Conread position:591-867
               
               
               Cow position:chr2:63274089-63273816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):113, 32

               
               
               Conread position:591-867
               
               
               Cow position:chr2:72183631-72183362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):133, 32

               
               
               Conread position:591-870
               
               
               Cow position:chr2:53851292-53851568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):118, 32

               
               
               Conread position:591-872
               
               
               Cow position:chr2:46909578-46909304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):113, 32

               
               
               Conread position:591-875
               
               
               Cow position:chr2:20362788-20362518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):136, 33

               
               
               Conread position:591-875
               
               
               Cow position:chr2:30642813-30642526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):28, 81

               
               
               Conread position:591-875
               
               
               Cow position:chr2:70780952-70781228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):24, 20

               
               
               Conread position:591-888
               
               
               Cow position:chr2:84970853-84970559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):172, 77

               
               
               Conread position:591-889
               
               
               Cow position:chr2:19287221-19286937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-894
               
               
               Cow position:chr2:31499859-31500157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):177, 51

               
               
               Conread position:591-894
               
               
               Cow position:chr2:70704111-70704414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):120, 32

               
               
               Conread position:591-896
               
               
               Cow position:chr2:26806258-26805955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:222
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):114, 32

               
               
               Conread position:591-897
               
               
               Cow position:chr2:23120906-23120615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:209
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):108, 32

               
               
               Conread position:591-904
               
               
               Cow position:chr2:54971036-54971339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):112, 32

               
               
               Conread position:591-906
               
               
               Cow position:chr2:43789959-43790265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-907
               
               
               Cow position:chr2:39500885-39501202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):81, 16

               
               
               Conread position:591-916
               
               
               Cow position:chr2:70660408-70660090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):34, 53

               
               
               Conread position:591-925
               
               
               Cow position:chr2:20791567-20791239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):267, 48

               
               
               Conread position:591-925
               
               
               Cow position:chr2:82019268-82018930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:231
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):36, 59

               
               
               Conread position:591-928
               
               
               Cow position:chr2:2094456-2094802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):35, 113

               
               
               Conread position:591-928
               
               
               Cow position:chr2:29159758-29160095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:234
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):35, 73

               
               
               Conread position:591-928
               
               
               Cow position:chr2:43835704-43835373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:235
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):108, 35

               
               
               Conread position:591-929
               
               
               Cow position:chr2:38795906-38795584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:230
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):36, 103

               
               
               Conread position:591-929
               
               
               Cow position:chr2:57939542-57939874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:226
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-929
               
               
               Cow position:chr2:64212702-64212365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:236
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-929
               
               
               Cow position:chr2:69676679-69676340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):35, 118

               
               
               Conread position:591-930
               
               
               Cow position:chr2:25282967-25283302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 124

               
               
               Conread position:591-930
               
               
               Cow position:chr2:28257317-28257665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):35, 121

               
               
               Conread position:591-930
               
               
               Cow position:chr2:28711134-28710821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:232
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):131, 16

               
               
               Conread position:591-930
               
               
               Cow position:chr2:45542539-45542213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:238
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):73, 32

               
               
               Conread position:591-930
               
               
               Cow position:chr2:47064971-47065301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 53

               
               
               Conread position:591-932
               
               
               Cow position:chr2:1210912-1210581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:235
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):36, 106

               
               
               Conread position:591-933
               
               
               Cow position:chr2:14634029-14634375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):87, 32

               
               
               Conread position:591-933
               
               
               Cow position:chr2:44170416-44170749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-935
               
               
               Cow position:chr2:46202127-46202461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):232, 32

               
               
               Conread position:591-935
               
               
               Cow position:chr2:54790138-54790476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):215, 109

               
               
               Conread position:591-935
               
               
               Cow position:chr2:83410366-83410693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):242, 67

               
               
               Conread position:591-937
               
               
               Cow position:chr2:777836-777488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):40, 81

               
               
               Conread position:591-937
               
               
               Cow position:chr2:15298392-15298730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:247
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):48, 27

               
               
               Conread position:591-937
               
               
               Cow position:chr2:15597617-15597287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:247
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):131, 34

               
               
               Conread position:591-937
               
               
               Cow position:chr2:21380544-21380208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:243
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):28, 114

               
               
               Conread position:591-937
               
               
               Cow position:chr2:27173227-27173549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:238
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):135, 17

               
               
               Conread position:591-937
               
               
               Cow position:chr2:32114932-32115258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:233
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):61, 32

               
               
               Conread position:591-937
               
               
               Cow position:chr2:42800901-42801231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:243
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:591-937
               
               
               Cow position:chr2:44191338-44191693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:250
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):22, 34

               
               
               Conread position:591-937
               
               
               Cow position:chr2:45478732-45478406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):24, 78

               
               
               Conread position:591-937
               
               
               Cow position:chr2:46119905-46119572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):340, 111

               
               
               Conread position:591-937
               
               
               Cow position:chr2:67596159-67595821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:241
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):129, 21

               
               
               Conread position:591-937
               
               
               Cow position:chr2:76969317-76968968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):207, 32

               
               
               Conread position:591-938
               
               
               Cow position:chr2:42969961-42970303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):30, 70

               
               
               Conread position:591-940
               
               
               Cow position:chr2:31460474-31460146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:591-940
               
               
               Cow position:chr2:55632635-55632970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 21

               
               
               Conread position:591-940
               
               
               Cow position:chr2:58135541-58135190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):15, 90

               
               
               Conread position:591-940
               
               
               Cow position:chr2:85925916-85926264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):132, 17

               
               
               Conread position:591-941
               
               
               Cow position:chr2:992011-992352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:244
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):138, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr2:2673382-2673730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):119, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr2:6038859-6039215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 247

               
               
               Conread position:591-941
               
               
               Cow position:chr2:7524281-7523917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):28, 119

               
               
               Conread position:591-941
               
               
               Cow position:chr2:17114876-17114542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:243
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):85, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr2:17940431-17940088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 118

               
               
               Conread position:591-941
               
               
               Cow position:chr2:18997581-18997916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:591-941
               
               
               Cow position:chr2:20947228-20947568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):110, 22

               
               
               Conread position:591-941
               
               
               Cow position:chr2:24393829-24393492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):121, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr2:26501078-26500739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:245
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):35, 80

               
               
               Conread position:591-941
               
               
               Cow position:chr2:41019358-41019017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:234
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):162, 33

               
               
               Conread position:591-941
               
               
               Cow position:chr2:43994794-43995130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr2:44065446-44065764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):132, 79

               
               
               Conread position:591-941
               
               
               Cow position:chr2:44986466-44986126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:591-941
               
               
               Cow position:chr2:45936101-45935768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:233
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:591-941
               
               
               Cow position:chr2:46120776-46120445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:245
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):132, 36

               
               
               Conread position:591-941
               
               
               Cow position:chr2:46130293-46129966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):86, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr2:46745779-46746134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:236
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr2:49428237-49428584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 52

               
               
               Conread position:591-941
               
               
               Cow position:chr2:55526901-55526574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:242
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr2:58074489-58074146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr2:58153561-58153903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:248
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):107, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr2:59397200-59396851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 91

               
               
               Conread position:591-941
               
               
               Cow position:chr2:62744151-62743810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:239
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):243, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr2:67745109-67745449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:246
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):265, 114

               
               
               Conread position:591-941
               
               
               Cow position:chr2:69250821-69250467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 156

               
               
               Conread position:591-944
               
               
               Cow position:chr2:47008487-47008137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):35, 119

               
               
               Conread position:591-945
               
               
               Cow position:chr2:45619539-45619193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:245
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):127, 32

               
               
               Conread position:591-946
               
               
               Cow position:chr2:38785747-38785397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:254
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):113, 14

               
               
               Conread position:591-947
               
               
               Cow position:chr2:54967862-54968214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 116

               
               
               Conread position:591-948
               
               
               Cow position:chr2:41145170-41145525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:234
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):110, 33

               
               
               Conread position:591-948
               
               
               Cow position:chr2:66404073-66403721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):31, 17

               
               
               Conread position:591-948
               
               
               Cow position:chr2:69579827-69579469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:251
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):28, 9

               
               
               Conread position:591-949
               
               
               Cow position:chr2:841019-841364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:241
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):32, 97

               
               
               Conread position:591-949
               
               
               Cow position:chr2:13035971-13036331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:240
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):44, 108

               
               
               Conread position:591-949
               
               
               Cow position:chr2:14826145-14826487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 51

               
               
               Conread position:591-949
               
               
               Cow position:chr2:25757772-25757424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:238
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):35, 117

               
               
               Conread position:591-949
               
               
               Cow position:chr2:39513879-39514246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):113, 309

               
               
               Conread position:591-949
               
               
               Cow position:chr2:42607922-42608274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 32

               
               
               Conread position:591-950
               
               
               Cow position:chr2:9063130-9063476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:250
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-950
               
               
               Cow position:chr2:16514640-16515001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:251
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):131, 93

               
               
               Conread position:591-950
               
               
               Cow position:chr2:31355563-31355907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:241
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):32, 56

               
               
               Conread position:591-950
               
               
               Cow position:chr2:31673132-31673472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:244
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):35, 54

               
               
               Conread position:591-950
               
               
               Cow position:chr2:42183224-42183574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 61

               
               
               Conread position:591-950
               
               
               Cow position:chr2:58686793-58687143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):279, 33

               
               
               Conread position:591-950
               
               
               Cow position:chr2:70895886-70896257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):35, 113

               
               
               Conread position:591-950
               
               
               Cow position:chr2:71437524-71437168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 33

               
               
               Conread position:591-951
               
               
               Cow position:chr2:16839489-16839848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:234
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):133, 33

               
               
               Conread position:591-951
               
               
               Cow position:chr2:23301604-23301938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):28, 68

               
               
               Conread position:591-951
               
               
               Cow position:chr2:43577941-43577569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:250
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-951
               
               
               Cow position:chr2:44167933-44168271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):243, 5

               
               
               Conread position:591-951
               
               
               Cow position:chr2:44229832-44229497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:249
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):97, 72

               
               
               Conread position:591-951
               
               
               Cow position:chr2:46135070-46135438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:249
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):29, 60

               
               
               Conread position:591-951
               
               
               Cow position:chr2:54700309-54700668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 35

               
               
               Conread position:591-951
               
               
               Cow position:chr2:56828713-56828350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):18, 33

               
               
               Conread position:591-951
               
               
               Cow position:chr2:68190785-68190437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:247
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):131, 21

               
               
               Conread position:591-951
               
               
               Cow position:chr2:69199459-69199115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:591-951
               
               
               Cow position:chr2:78116491-78116150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:256
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):68, 59

               
               
               Conread position:591-952
               
               
               Cow position:chr2:14555895-14555536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:241
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):8, 35

               
               
               Conread position:591-952
               
               
               Cow position:chr2:32660030-32660395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 118

               
               
               Conread position:591-952
               
               
               Cow position:chr2:37973466-37973115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):35, 16

               
               
               Conread position:591-952
               
               
               Cow position:chr2:52485121-52484754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:255
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):28, 128

               
               
               Conread position:591-954
               
               
               Cow position:chr2:6324014-6323643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:251
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):28, 110

               
               
               Conread position:591-955
               
               
               Cow position:chr2:66959535-66959892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):17, 98

               
               
               Conread position:591-957
               
               
               Cow position:chr2:16505619-16505255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:255
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):136, 32

               
               
               Conread position:591-958
               
               
               Cow position:chr2:13580103-13580453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:255
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):310, 70

               
               
               Conread position:591-958
               
               
               Cow position:chr2:75227057-75227421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:254
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):121, 31

               
               
               Conread position:591-959
               
               
               Cow position:chr2:34750124-34749776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:259
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-959
               
               
               Cow position:chr2:36077202-36077576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 82

               
               
               Conread position:591-959
               
               
               Cow position:chr2:76561968-76562339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 33

               
               
               Conread position:591-959
               
               
               Cow position:chr2:84480660-84480282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:263
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):54, 32

               
               
               Conread position:591-960
               
               
               Cow position:chr2:57776205-57776568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:258
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):31, 113

               
               
               Conread position:592-697
               
               
               Cow position:chr2:42599789-42599893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:86
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:592-699
               
               
               Cow position:chr2:45554172-45554278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:87
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:592-753
               
               
               Cow position:chr2:46184413-46184250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):35, 132

               
               
               Conread position:592-785
               
               
               Cow position:chr2:85091179-85090985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):34, 94

               
               
               Conread position:592-809
               
               
               Cow position:chr2:1300531-1300324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):130, 31

               
               
               Conread position:592-811
               
               
               Cow position:chr2:13604325-13604542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):176, 31

               
               
               Conread position:592-816
               
               
               Cow position:chr2:21881-21659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):29, 124

               
               
               Conread position:592-834
               
               
               Cow position:chr2:9324853-9325095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):103, 32

               
               
               Conread position:592-855
               
               
               Cow position:chr2:13709328-13709586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):132, 104

               
               
               Conread position:592-860
               
               
               Cow position:chr2:39078235-39078500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):29, 49

               
               
               Conread position:592-866
               
               
               Cow position:chr2:78530200-78529931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):138, 102

               
               
               Conread position:592-872
               
               
               Cow position:chr2:74260313-74260588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):105, 32

               
               
               Conread position:592-875
               
               
               Cow position:chr2:1638459-1638741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):131, 31

               
               
               Conread position:592-912
               
               
               Cow position:chr2:39281053-39281369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):35, 53

               
               
               Conread position:592-919
               
               
               Cow position:chr2:50565783-50566115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 120

               
               
               Conread position:592-925
               
               
               Cow position:chr2:10320094-10319767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):160, 60

               
               
               Conread position:592-929
               
               
               Cow position:chr2:59819946-59819624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:592-929
               
               
               Cow position:chr2:72527813-72528150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 107

               
               
               Conread position:592-935
               
               
               Cow position:chr2:58310552-58310885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):34, 49

               
               
               Conread position:592-937
               
               
               Cow position:chr2:45623873-45624227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:250
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):130, 106

               
               
               Conread position:592-937
               
               
               Cow position:chr2:71622191-71621853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):82, 11

               
               
               Conread position:592-937
               
               
               Cow position:chr2:74249368-74249027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:238
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):10, 117

               
               
               Conread position:592-938
               
               
               Cow position:chr2:39362806-39362477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:230
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):34, 66

               
               
               Conread position:592-941
               
               
               Cow position:chr2:29779683-29779337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):34, 104

               
               
               Conread position:592-941
               
               
               Cow position:chr2:33497343-33497001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 100

               
               
               Conread position:592-941
               
               
               Cow position:chr2:39590110-39590455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):61, 32

               
               
               Conread position:592-941
               
               
               Cow position:chr2:41452089-41452433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 33

               
               
               Conread position:592-941
               
               
               Cow position:chr2:69581651-69581312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):28, 105

               
               
               Conread position:592-941
               
               
               Cow position:chr2:82581074-82580736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:243
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):125, 31

               
               
               Conread position:592-945
               
               
               Cow position:chr2:37614805-37615146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:229
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):176, 71

               
               
               Conread position:592-947
               
               
               Cow position:chr2:6232035-6231682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):158, 128

               
               
               Conread position:592-948
               
               
               Cow position:chr2:2930910-2931265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):32, 94

               
               
               Conread position:592-948
               
               
               Cow position:chr2:26170600-26170954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 104

               
               
               Conread position:592-948
               
               
               Cow position:chr2:65587022-65587364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):242, 54

               
               
               Conread position:592-949
               
               
               Cow position:chr2:9767580-9767223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):34, 53

               
               
               Conread position:592-949
               
               
               Cow position:chr2:13856965-13856610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):34, 16

               
               
               Conread position:592-949
               
               
               Cow position:chr2:59179918-59180280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:246
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):34, 53

               
               
               Conread position:592-949
               
               
               Cow position:chr2:71800229-71799873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:234
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):31, 60

               
               
               Conread position:592-949
               
               
               Cow position:chr2:76340802-76340440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:242
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):34, 270

               
               
               Conread position:592-950
               
               
               Cow position:chr2:86191639-86191291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:233
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):34, 15

               
               
               Conread position:592-951
               
               
               Cow position:chr2:28820220-28820582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 36

               
               
               Conread position:592-951
               
               
               Cow position:chr2:45499345-45498994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 31

               
               
               Conread position:592-951
               
               
               Cow position:chr2:65269837-65269479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):35, 95

               
               
               Conread position:592-957
               
               
               Cow position:chr2:64292855-64292515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):130, 103

               
               
               Conread position:592-958
               
               
               Cow position:chr2:7194059-7194425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 72

               
               
               Conread position:592-958
               
               
               Cow position:chr2:33402628-33402269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:251
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):33, 80

               
               
               Conread position:592-958
               
               
               Cow position:chr2:46343281-46342931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:258
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):28, 55

               
               
               Conread position:592-959
               
               
               Cow position:chr2:38362511-38362162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 31

               
               
               Conread position:592-959
               
               
               Cow position:chr2:41147720-41148093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:251
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):34, 106

               
               
               Conread position:592-959
               
               
               Cow position:chr2:41622340-41622703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 52

               
               
               Conread position:592-960
               
               
               Cow position:chr2:44931409-44931037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:260
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):104, 78

               
               
               Conread position:592-960
               
               
               Cow position:chr2:80275435-80275080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:253
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):138, 31

               
               
               Conread position:593-794
               
               
               Cow position:chr2:11616954-11617151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:593-798
               
               
               Cow position:chr2:39662559-39662765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):106, 31

               
               
               Conread position:593-798
               
               
               Cow position:chr2:40691347-40691542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:593-800
               
               
               Cow position:chr2:67313831-67313627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):129, 30

               
               
               Conread position:593-819
               
               
               Cow position:chr2:45912776-45912551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):130, 30

               
               
               Conread position:593-853
               
               
               Cow position:chr2:70495131-70495383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:593-859
               
               
               Cow position:chr2:81349023-81348755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):114, 31

               
               
               Conread position:593-875
               
               
               Cow position:chr2:24434418-24434143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):129, 30

               
               
               Conread position:593-875
               
               
               Cow position:chr2:85339601-85339320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):129, 30

               
               
               Conread position:593-886
               
               
               Cow position:chr2:56846611-56846895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):19, 53

               
               
               Conread position:593-912
               
               
               Cow position:chr2:41185331-41185630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):23, 36

               
               
               Conread position:593-922
               
               
               Cow position:chr2:69367273-69366933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):7, 123

               
               
               Conread position:593-927
               
               
               Cow position:chr2:16428539-16428216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:242
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):86, 31

               
               
               Conread position:593-929
               
               
               Cow position:chr2:39815425-39815108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 30

               
               
               Conread position:593-937
               
               
               Cow position:chr2:73353649-73354002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):26, 114

               
               
               Conread position:593-939
               
               
               Cow position:chr2:68970595-68970943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:241
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):31, 9

               
               
               Conread position:593-940
               
               
               Cow position:chr2:21382995-21382650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 30

               
               
               Conread position:593-941
               
               
               Cow position:chr2:45565558-45565901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):28, 115

               
               
               Conread position:593-941
               
               
               Cow position:chr2:46189240-46188897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 30

               
               
               Conread position:593-945
               
               
               Cow position:chr2:6160470-6160146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:239
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:593-945
               
               
               Cow position:chr2:24218357-24218013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:250
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):58, 109

               
               
               Conread position:593-945
               
               
               Cow position:chr2:78249595-78249943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 30

               
               
               Conread position:593-948
               
               
               Cow position:chr2:5300449-5300804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:255
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):28, 58

               
               
               Conread position:593-948
               
               
               Cow position:chr2:33472127-33471790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:256
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):33, 62

               
               
               Conread position:593-949
               
               
               Cow position:chr2:51098232-51097876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 114

               
               
               Conread position:593-949
               
               
               Cow position:chr2:78229674-78230018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):33, 106

               
               
               Conread position:593-950
               
               
               Cow position:chr2:46033190-46033543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 30

               
               
               Conread position:593-951
               
               
               Cow position:chr2:63250527-63250201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):338, 29

               
               
               Conread position:593-959
               
               
               Cow position:chr2:40488674-40489021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:254
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):122, 23

               
               
               Conread position:593-960
               
               
               Cow position:chr2:11656754-11657108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 30

               
               
               Conread position:594-795
               
               
               Cow position:chr2:50445757-50445959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):128, 191

               
               
               Conread position:594-867
               
               
               Cow position:chr2:54810995-54810727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):111, 29

               
               
               Conread position:594-916
               
               
               Cow position:chr2:45535324-45535640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 29

               
               
               Conread position:594-937
               
               
               Cow position:chr2:17805904-17805572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:239
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):113, 29

               
               
               Conread position:594-941
               
               
               Cow position:chr2:15250040-15250367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 30

               
               
               Conread position:594-941
               
               
               Cow position:chr2:29121744-29122084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 29

               
               
               Conread position:594-941
               
               
               Cow position:chr2:42255296-42255630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:594-941
               
               
               Cow position:chr2:46330919-46331266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):126, 30

               
               
               Conread position:594-941
               
               
               Cow position:chr2:54883325-54883667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):96, 29

               
               
               Conread position:594-941
               
               
               Cow position:chr2:85795095-85794769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:594-945
               
               
               Cow position:chr2:29290451-29290114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):53, 100

               
               
               Conread position:594-948
               
               
               Cow position:chr2:80242329-80241976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):33, 51

               
               
               Conread position:594-951
               
               
               Cow position:chr2:22372088-22371745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 76

               
               
               Conread position:594-959
               
               
               Cow position:chr2:11599297-11599641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:245
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):345, 29

               
               
               Conread position:594-959
               
               
               Cow position:chr2:58869302-58868945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:248
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):160, 105

               
               
               Conread position:595-788
               
               
               Cow position:chr2:69238129-69238329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):31, 123

               
               
               Conread position:595-855
               
               
               Cow position:chr2:44004817-44005072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):131, 17

               
               
               Conread position:595-949
               
               
               Cow position:chr2:28610420-28610072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):24, 53

               
               
               Conread position:596-698
               
               
               Cow position:chr2:28318993-28318892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:85
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:596-803
               
               
               Cow position:chr2:4273408-4273200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):130, 28

               
               
               Conread position:596-875
               
               
               Cow position:chr2:42927586-42927314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):78, 27

               
               
               Conread position:596-875
               
               
               Cow position:chr2:44025233-44025514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):31, 165

               
               
               Conread position:596-921
               
               
               Cow position:chr2:12802811-12802492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):31, 11

               
               
               Conread position:596-940
               
               
               Cow position:chr2:39335004-39334675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:240
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):170, 27

               
               
               Conread position:596-941
               
               
               Cow position:chr2:75600578-75600910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:243
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):28, 107

               
               
               Conread position:596-945
               
               
               Cow position:chr2:19156324-19155982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:244
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):24, 112

               
               
               Conread position:596-948
               
               
               Cow position:chr2:80099-79754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:239
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:596-949
               
               
               Cow position:chr2:19294455-19294797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 28

               
               
               Conread position:596-950
               
               
               Cow position:chr2:24858863-24859213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):29, 125

               
               
               Conread position:596-952
               
               
               Cow position:chr2:24593732-24594073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):103, 28

               
               
               Conread position:596-955
               
               
               Cow position:chr2:38658923-38658581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:241
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):8, 107

               
               
               Conread position:597-742
               
               
               Cow position:chr2:66615053-66614904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:597-842
               
               
               Cow position:chr2:80324991-80324741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):125, 24

               
               
               Conread position:597-875
               
               
               Cow position:chr2:6901640-6901915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):129, 101

               
               
               Conread position:597-939
               
               
               Cow position:chr2:66461171-66460840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):126, 107

               
               
               Conread position:597-941
               
               
               Cow position:chr2:12950308-12949964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:226
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):63, 26

               
               
               Conread position:597-941
               
               
               Cow position:chr2:16513721-16514055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):127, 100

               
               
               Conread position:597-941
               
               
               Cow position:chr2:41248429-41248765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 26

               
               
               Conread position:597-944
               
               
               Cow position:chr2:81791711-81791363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:232
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):32, 99

               
               
               Conread position:597-951
               
               
               Cow position:chr2:12682799-12682447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 75

               
               
               Conread position:598-875
               
               
               Cow position:chr2:39237281-39237548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:598-930
               
               
               Cow position:chr2:65901890-65902214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):115, 32

               
               
               Conread position:598-941
               
               
               Cow position:chr2:80769981-80770302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:231
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):195, 25

               
               
               Conread position:598-944
               
               
               Cow position:chr2:55278737-55278382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:245
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):28, 64

               
               
               Conread position:598-948
               
               
               Cow position:chr2:66916853-66916506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):28, 14

               
               
               Conread position:598-959
               
               
               Cow position:chr2:44051173-44051528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 25

               
               
               Conread position:599-873
               
               
               Cow position:chr2:39597827-39598098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):96, 25

               
               
               Conread position:599-936
               
               
               Cow position:chr2:60315480-60315157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):104, 25

               
               
               Conread position:600-929
               
               
               Cow position:chr2:65931829-65932156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 24

               
               
               Conread position:600-930
               
               
               Cow position:chr2:61136601-61136917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):23, 60

               
               
               Conread position:600-944
               
               
               Cow position:chr2:46242723-46242378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:227
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):154, 24

               
               
               Conread position:601-854
               
               
               Cow position:chr2:72407625-72407383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:602-941
               
               
               Cow position:chr2:23539738-23540061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):24, 47

               
               
               Conread position:602-949
               
               
               Cow position:chr2:16694010-16693667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):24, 36

               
               
               Conread position:602-950
               
               
               Cow position:chr2:28726341-28726671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):22, 64

               
               
               Conread position:603-941
               
               
               Cow position:chr2:48525678-48525332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:243
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):46, 76

               
               
               Conread position:604-939
               
               
               Cow position:chr2:15059191-15058864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:233
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):119, 20

               
               
               Conread position:604-943
               
               
               Cow position:chr2:43960045-43960382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):126, 79

               
               
               Conread position:604-944
               
               
               Cow position:chr2:47047884-47047550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:225
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):81, 103

               
               
               Conread position:606-941
               
               
               Cow position:chr2:1708840-1709167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):29, 117

               
               
               Conread position:606-950
               
               
               Cow position:chr2:1073404-1073729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):310, 17

               
               
               Conread position:607-940
               
               
               Cow position:chr2:60690757-60691079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:224
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):97, 16

               
               
               Conread position:607-941
               
               
               Cow position:chr2:76861590-76861251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:607-947
               
               
               Cow position:chr2:41915540-41915222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:238
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):68, 54

               
               
               Conread position:607-959
               
               
               Cow position:chr2:37791255-37790895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):148, 114

               
               
               Conread position:607-959
               
               
               Cow position:chr2:63201337-63200989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):18, 53

               
               
               Conread position:608-816
               
               
               Cow position:chr2:45281524-45281728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):114, 18

               
               
               Conread position:608-946
               
               
               Cow position:chr2:16481987-16481653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:234
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):122, 46

               
               
               Conread position:609-838
               
               
               Cow position:chr2:83233763-83233994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):67, 93

               
               
               Conread position:609-936
               
               
               Cow position:chr2:51181907-51181580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):11, 77

               
               
               Conread position:611-848
               
               
               Cow position:chr2:69223347-69223112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):11, 70

               
               
               Conread position:611-941
               
               
               Cow position:chr2:10505747-10505412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:240
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):89, 13

               
               
               Conread position:613-820
               
               
               Cow position:chr2:64131300-64131500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):85, 10

               
               
               Conread position:613-847
               
               
               Cow position:chr2:12051027-12051258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):13, 160

               
               
               Conread position:613-891
               
               
               Cow position:chr2:62861467-62861745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):155, 10

               
               
               Conread position:613-944
               
               
               Cow position:chr2:18281851-18281529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):145, 20

               
               
               Conread position:614-941
               
               
               Cow position:chr2:50450030-50449710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):21, 93

               
               
               Conread position:616-928
               
               
               Cow position:chr2:67386599-67386284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:224
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):10, 21

               
               
               Conread position:616-941
               
               
               Cow position:chr2:24602280-24602601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):28, 91

               
               
               Conread position:616-942
               
               
               Cow position:chr2:39228687-39229009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):10, 159

               
               
               Conread position:617-948
               
               
               Cow position:chr2:44022925-44022597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 37

               
               
               Conread position:618-918
               
               
               Cow position:chr2:1745846-1745540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):12, 236

               
               
               Conread position:618-941
               
               
               Cow position:chr2:24530260-24530563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:618-941
               
               
               Cow position:chr2:72310117-72309797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):225, 28

               
               
               Conread position:618-944
               
               
               Cow position:chr2:38886754-38886439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):7, 84

               
               
               Conread position:618-945
               
               
               Cow position:chr2:21049433-21049131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:618-951
               
               
               Cow position:chr2:56867417-56867093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):273, 103

               
               
               Conread position:618-958
               
               
               Cow position:chr2:29343529-29343186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:228
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):112, 88

               
               
               Conread position:618-960
               
               
               Cow position:chr2:24596334-24596675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):112, 88

               
               
               Conread position:619-842
               
               
               Cow position:chr2:55062769-55062981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:619-874
               
               
               Cow position:chr2:25967010-25966755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):103, 96

               
               
               Conread position:619-874
               
               
               Cow position:chr2:44222705-44222956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):104, 76

               
               
               Conread position:619-936
               
               
               Cow position:chr2:41040825-41040512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):54, 24

               
               
               Conread position:619-937
               
               
               Cow position:chr2:30351818-30351508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):91, 31

               
               
               Conread position:619-941
               
               
               Cow position:chr2:40597463-40597772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:229
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):85, 27

               
               
               Conread position:619-944
               
               
               Cow position:chr2:48635161-48634849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):103, 76

               
               
               Conread position:619-951
               
               
               Cow position:chr2:47753737-47753388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:235
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):52, 105

               
               
               Conread position:619-955
               
               
               Cow position:chr2:44007302-44007644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):198, 39

               
               
               Conread position:619-959
               
               
               Cow position:chr2:29927936-29928279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):139, 6

               
               
               Conread position:620-941
               
               
               Cow position:chr2:40411285-40410974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):110, 77

               
               
               Conread position:620-945
               
               
               Cow position:chr2:67575983-67576306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):135, 11

               
               
               Conread position:620-946
               
               
               Cow position:chr2:46204404-46204725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):110, 8

               
               
               Conread position:621-875
               
               
               Cow position:chr2:39798124-39798379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):25, 31

               
               
               Conread position:621-941
               
               
               Cow position:chr2:55496401-55496094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:223
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:621-955
               
               
               Cow position:chr2:4016954-4016645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):319, 83

               
               
               Conread position:621-957
               
               
               Cow position:chr2:62247526-62247868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):109, 84

               
               
               Conread position:622-927
               
               
               Cow position:chr2:35948795-35948495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):36, 87

               
               
               Conread position:622-950
               
               
               Cow position:chr2:45642604-45642287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:237
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):94, 147

               
               
               Conread position:623-941
               
               
               Cow position:chr2:29734710-29735026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):79, 86

               
               
               Conread position:624-885
               
               
               Cow position:chr2:3981783-3982034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):252, 46

               
               
               Conread position:624-903
               
               
               Cow position:chr2:62200643-62200921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):99, 92

               
               
               Conread position:624-941
               
               
               Cow position:chr2:70908427-70908133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):160, 25

               
               
               Conread position:624-951
               
               
               Cow position:chr2:19138005-19137681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 91

               
               
               Conread position:625-941
               
               
               Cow position:chr2:67927906-67927592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 71

               
               
               Conread position:626-951
               
               
               Cow position:chr2:44506095-44505780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):84, 17

               
               
               Conread position:626-960
               
               
               Cow position:chr2:14626472-14626823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:232
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):80, 44

               
               
               Conread position:627-855
               
               
               Cow position:chr2:43123229-43123456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:627-855
               
               
               Cow position:chr2:77281911-77282135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):95, 84

               
               
               Conread position:627-896
               
               
               Cow position:chr2:84497832-84498102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):66, 16

               
               
               Conread position:627-958
               
               
               Cow position:chr2:40257524-40257198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:228
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):103, 231

               
               
               Conread position:628-918
               
               
               Cow position:chr2:60616594-60616304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):102, 78

               
               
               Conread position:628-949
               
               
               Cow position:chr2:71600310-71600635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:629-842
               
               
               Cow position:chr2:22113809-22113593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):70, 208

               
               
               Conread position:631-954
               
               
               Cow position:chr2:76762111-76762431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:220
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):245, 90

               
               
               Conread position:632-855
               
               
               Cow position:chr2:46971015-46971241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):72, 83

               
               
               Conread position:633-948
               
               
               Cow position:chr2:32431839-32431531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):86, 46

               
               
               Conread position:634-854
               
               
               Cow position:chr2:13271522-13271303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):24, 78

               
               
               Conread position:640-949
               
               
               Cow position:chr2:18232921-18233230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):11, 58

               
               
               Conread position:641-950
               
               
               Cow position:chr2:72654096-72654413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):6, 124

               
               
               Conread position:643-960
               
               
               Cow position:chr2:40410048-40410365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):59, 257

               
               
               Conread position:650-849
               
               
               Cow position:chr2:9098803-9098603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):60, 46

               
               
               Conread position:650-872
               
               
               Cow position:chr2:40802917-40803135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):72, 7

               
               
               Conread position:650-896
               
               
               Cow position:chr2:68870608-68870847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):63, 22

               
               
               Conread position:650-930
               
               
               Cow position:chr2:69350654-69350379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):53, 61

               
               
               Conread position:650-941
               
               
               Cow position:chr2:46058096-46057812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):80, 109

               
               
               Conread position:650-951
               
               
               Cow position:chr2:8843913-8843614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):80, 56

               
               
               Conread position:651-935
               
               
               Cow position:chr2:19502564-19502279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):62, 21

               
               
               Conread position:651-941
               
               
               Cow position:chr2:13062309-13062009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):51, 209

               
               
               Conread position:651-949
               
               
               Cow position:chr2:32087789-32088088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):33, 73

               
               
               Conread position:652-938
               
               
               Cow position:chr2:69780262-69779970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):72, 54

               
               
               Conread position:653-951
               
               
               Cow position:chr2:66564760-66564468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):273, 39

               
               
               Conread position:653-959
               
               
               Cow position:chr2:39371337-39371627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):35, 24

               
               
               Conread position:654-934
               
               
               Cow position:chr2:70847344-70847070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):50, 28

               
               
               Conread position:654-959
               
               
               Cow position:chr2:73023625-73023925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):76, 52

               
               
               Conread position:654-960
               
               
               Cow position:chr2:68328934-68328632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):117, 46

               
               
               Conread position:655-941
               
               
               Cow position:chr2:57733348-57733627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):44, 199

               
               
               Conread position:657-949
               
               
               Cow position:chr2:26745213-26744917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):40, 60

               
               
               Conread position:658-940
               
               
               Cow position:chr2:46968269-46967999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):19, 11

               
               
               Conread position:658-949
               
               
               Cow position:chr2:15348313-15348604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:203
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):64, 48

               
               
               Conread position:658-949
               
               
               Cow position:chr2:22677114-22677403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:662-959
               
               
               Cow position:chr2:43474103-43474398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):68, 25

               
               
               Conread position:662-959
               
               
               Cow position:chr2:46614329-46614625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):12, 7

               
               
               Conread position:663-941
               
               
               Cow position:chr2:12840116-12839829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):41, 27

               
               
               Conread position:663-959
               
               
               Cow position:chr2:8821159-8821459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):57, 34

               
               
               Conread position:664-951
               
               
               Cow position:chr2:54009397-54009101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:666-941
               
               
               Cow position:chr2:18236311-18236038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):16, 32

               
               
               Conread position:669-949
               
               
               Cow position:chr2:81983996-81984276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):53, 46

               
               
               Conread position:670-960
               
               
               Cow position:chr2:32988499-32988787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):120, 12

               
               
               Conread position:673-875
               
               
               Cow position:chr2:46124766-46124568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):57, 92

               
               
               Conread position:673-939
               
               
               Cow position:chr2:47443197-47443470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):50, 29

               
               
               Conread position:673-941
               
               
               Cow position:chr2:10628599-10628332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):188, 49

               
               
               Conread position:673-945
               
               
               Cow position:chr2:8083527-8083802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):27, 79

               
               
               Conread position:673-949
               
               
               Cow position:chr2:83211033-83211307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):28, 43

               
               
               Conread position:673-950
               
               
               Cow position:chr2:41462490-41462216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):35, 44

               
               
               Conread position:673-950
               
               
               Cow position:chr2:55872582-55872310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):50, 33

               
               
               Conread position:673-955
               
               
               Cow position:chr2:22042472-22042767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):36, 24

               
               
               Conread position:673-958
               
               
               Cow position:chr2:13672461-13672735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):50, 24

               
               
               Conread position:673-958
               
               
               Cow position:chr2:28301141-28301418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):39, 47

               
               
               Conread position:674-939
               
               
               Cow position:chr2:39663312-39663576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):57, 90

               
               
               Conread position:674-941
               
               
               Cow position:chr2:45596918-45597178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):49, 104

               
               
               Conread position:675-941
               
               
               Cow position:chr2:46161893-46162152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):48, 188

               
               
               Conread position:675-959
               
               
               Cow position:chr2:31529430-31529704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):134, 34

               
               
               Conread position:675-959
               
               
               Cow position:chr2:68292707-68292988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):67, 22

               
               
               Conread position:676-881
               
               
               Cow position:chr2:19394493-19394695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):54, 21

               
               
               Conread position:676-956
               
               
               Cow position:chr2:82116029-82116301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):46, 33

               
               
               Conread position:677-949
               
               
               Cow position:chr2:64230360-64230633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):239, 20

               
               
               Conread position:677-951
               
               
               Cow position:chr2:47978103-47977830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):20, 30

               
               
               Conread position:678-940
               
               
               Cow position:chr2:4644214-4644468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):64, 19

               
               
               Conread position:678-944
               
               
               Cow position:chr2:56003180-56003438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:678-950
               
               
               Cow position:chr2:62761773-62762045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):63, 28

               
               
               Conread position:679-929
               
               
               Cow position:chr2:35988674-35988430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):51, 18

               
               
               Conread position:679-956
               
               
               Cow position:chr2:10574613-10574343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):7, 30

               
               
               Conread position:680-951
               
               
               Cow position:chr2:2485787-2486054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):36, 17

               
               
               Conread position:681-927
               
               
               Cow position:chr2:1317940-1317696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:681-942
               
               
               Cow position:chr2:21410161-21410430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:681-949
               
               
               Cow position:chr2:65830389-65830130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:682-949
               
               
               Cow position:chr2:13013035-13013287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):48, 27

               
               
               Conread position:683-946
               
               
               Cow position:chr2:15871884-15872134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):53, 25

               
               
               Conread position:685-945
               
               
               Cow position:chr2:80962023-80961757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):45, 15

               
               
               Conread position:686-959
               
               
               Cow position:chr2:47879191-47879451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:687-929
               
               
               Cow position:chr2:45510611-45510362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):14, 27

               
               
               Conread position:693-867
               
               
               Cow position:chr2:50367926-50368100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):29, 13

               
               
               Conread position:693-959
               
               
               Cow position:chr2:33493456-33493196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):11, 22

               
               
               Conread position:694-949
               
               
               Cow position:chr2:44714723-44714470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):36, 19

               
               
               Conread position:695-933
               
               
               Cow position:chr2:39750071-39750308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):28, 101

               
               
               Conread position:696-949
               
               
               Cow position:chr2:13317541-13317791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):32, 10

               
               
               Conread position:696-949
               
               
               Cow position:chr2:42979021-42978769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):34, 17

               
               
               Conread position:698-954
               
               
               Cow position:chr2:15219074-15219322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):161, 24

               
               
               Conread position:700-941
               
               
               Cow position:chr2:38953787-38954033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):159, 21

               
               
               Conread position:701-950
               
               
               Cow position:chr2:40373437-40373199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):15, 57

               
               
               Conread position:702-960
               
               
               Cow position:chr2:1923928-1923660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):28, 12

               
               
               Conread position:703-944
               
               
               Cow position:chr2:54052277-54052031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):14, 215

               
               
               Conread position:703-949
               
               
               Cow position:chr2:37121227-37121464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):14, 137

               
               
               Conread position:703-950
               
               
               Cow position:chr2:38640288-38640527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):27, 12

               
               
               Conread position:704-959
               
               
               Cow position:chr2:60091469-60091215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):16, 135

               
               
               Conread position:709-904
               
               
               Cow position:chr2:23647706-23647514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):13, 92

               
               
               Conread position:709-929
               
               
               Cow position:chr2:16669438-16669658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):10, 129

               
               
               Conread position:709-929
               
               
               Cow position:chr2:38651484-38651694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):13, 115

               
               
               Conread position:709-930
               
               
               Cow position:chr2:1422321-1422540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):14, 65

               
               
               Conread position:709-944
               
               
               Cow position:chr2:44620555-44620791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):11, 145

               
               
               Conread position:709-959
               
               
               Cow position:chr2:39566724-39566478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):17, 146

               
               
               Conread position:710-925
               
               
               Cow position:chr2:61480559-61480775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:710-937
               
               
               Cow position:chr2:28330776-28330555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):20, 109

               
               
               Conread position:710-941
               
               
               Cow position:chr2:50013328-50013557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):7, 101

               
               
               Conread position:710-949
               
               
               Cow position:chr2:21074155-21073916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):20, 5

               
               
               Conread position:710-949
               
               
               Cow position:chr2:45505777-45506017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:710-951
               
               
               Cow position:chr2:16487958-16488197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):20, 67

               
               
               Conread position:710-958
               
               
               Cow position:chr2:9726126-9725882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):20, 5

               
               
               Conread position:710-959
               
               
               Cow position:chr2:2827714-2827960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):20, 96

               
               
               Conread position:710-959
               
               
               Cow position:chr2:15734386-15734632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):20, 65

               
               
               Conread position:710-959
               
               
               Cow position:chr2:43990743-43990989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):20, 143

               
               
               Conread position:711-941
               
               
               Cow position:chr2:37619942-37619710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):13, 171

               
               
               Conread position:711-959
               
               
               Cow position:chr2:71486750-71486995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):19, 146

               
               
               Conread position:712-904
               
               
               Cow position:chr2:24722298-24722105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:712-944
               
               
               Cow position:chr2:19058126-19058355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):18, 125

               
               
               Conread position:712-947
               
               
               Cow position:chr2:49862627-49862862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):18, 117

               
               
               Conread position:714-929
               
               
               Cow position:chr2:46230349-46230135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):9, 70

               
               
               Conread position:714-932
               
               
               Cow position:chr2:78360384-78360601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):16, 163

               
               
               Conread position:714-938
               
               
               Cow position:chr2:49717113-49716889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):8, 113

               
               
               Conread position:714-949
               
               
               Cow position:chr2:61562052-61561824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):9, 74

               
               
               Conread position:714-951
               
               
               Cow position:chr2:38837542-38837304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:714-955
               
               
               Cow position:chr2:50914037-50913801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):17, 28

               
               
               Conread position:715-941
               
               
               Cow position:chr2:1476389-1476608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):199, 9

               
               
               Conread position:715-941
               
               
               Cow position:chr2:40703690-40703471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):7, 121

               
               
               Conread position:715-945
               
               
               Cow position:chr2:65059014-65059246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):15, 226

               
               
               Conread position:715-949
               
               
               Cow position:chr2:52466472-52466238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):7, 54

               
               
               Conread position:715-951
               
               
               Cow position:chr2:53491475-53491251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):8, 145

               
               
               Conread position:716-941
               
               
               Cow position:chr2:43591396-43591174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):7, 84

               
               
               Conread position:716-950
               
               
               Cow position:chr2:57802512-57802273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):14, 198

               
               
               Conread position:721-951
               
               
               Cow position:chr2:85275512-85275289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):41, 82

               
               
               Conread position:722-935
               
               
               Cow position:chr2:51099991-51099780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:725-941
               
               
               Cow position:chr2:3739858-3739642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:725-941
               
               
               Cow position:chr2:5604512-5604720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:725-960
               
               
               Cow position:chr2:39334674-39334439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:726-936
               
               
               Cow position:chr2:46014754-46014964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:726-941
               
               
               Cow position:chr2:25922398-25922611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):119, 30

               
               
               Conread position:726-959
               
               
               Cow position:chr2:12139565-12139323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:726-959
               
               
               Cow position:chr2:79235509-79235743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):136, 161

               
               
               Conread position:726-960
               
               
               Cow position:chr2:16847172-16847403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:729-941
               
               
               Cow position:chr2:52345973-52345762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:729-948
               
               
               Cow position:chr2:70826322-70826540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):211, 92

               
               
               Conread position:729-951
               
               
               Cow position:chr2:3931733-3931519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):211, 86

               
               
               Conread position:730-941
               
               
               Cow position:chr2:28356340-28356551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:730-949
               
               
               Cow position:chr2:36178700-36178484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:731-940
               
               
               Cow position:chr2:46053463-46053672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:731-951
               
               
               Cow position:chr2:72315819-72315600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):214, 97

               
               
               Conread position:732-937
               
               
               Cow position:chr2:9062671-9062876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:732-941
               
               
               Cow position:chr2:80848077-80848283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:733-924
               
               
               Cow position:chr2:81233117-81232924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:735-951
               
               
               Cow position:chr2:65554807-65554592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):159, 0

               
               
               Conread position:738-941
               
               
               Cow position:chr2:53652851-53653053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:738-951
               
               
               Cow position:chr2:55004287-55004493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:740-951
               
               
               Cow position:chr2:16667939-16668145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):199, 83

               
               
               Conread position:740-959
               
               
               Cow position:chr2:13468217-13468434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:741-938
               
               
               Cow position:chr2:2437598-2437413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):97, 31

               
               
               Conread position:741-954
               
               
               Cow position:chr2:19017454-19017668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):199, 0

               
               
               Conread position:741-958
               
               
               Cow position:chr2:36117252-36117465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):193, 147

               
               
               Conread position:742-950
               
               
               Cow position:chr2:26694611-26694819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):26, 34

               
               
               Conread position:744-949
               
               
               Cow position:chr2:30952281-30952486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:745-957
               
               
               Cow position:chr2:47595985-47595763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:746-937
               
               
               Cow position:chr2:13695233-13695042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):97, 146

               
               
               Conread position:747-948
               
               
               Cow position:chr2:39363011-39363216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):115, 167

               
               
               Conread position:747-948
               
               
               Cow position:chr2:78379410-78379214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:747-951
               
               
               Cow position:chr2:26361763-26361968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):47, 123

               
               
               Conread position:747-959
               
               
               Cow position:chr2:35934889-35935108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:748-948
               
               
               Cow position:chr2:26454644-26454443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):96, 102

               
               
               Conread position:748-950
               
               
               Cow position:chr2:29394999-29394796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):197, 0

               
               
               Conread position:748-950
               
               
               Cow position:chr2:37652258-37652464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):80, 71

               
               
               Conread position:748-956
               
               
               Cow position:chr2:64465768-64465561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):25, 104

               
               
               Conread position:749-950
               
               
               Cow position:chr2:44063765-44063569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:754-951
               
               
               Cow position:chr2:46111039-46110836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):17, 191

               
               
               Conread position:757-941
               
               
               Cow position:chr2:30954578-30954393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):92, 159

               
               
               Conread position:758-941
               
               
               Cow position:chr2:53567510-53567684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:765-959
               
               
               Cow position:chr2:33711962-33711764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:768-939
               
               
               Cow position:chr2:39483513-39483684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:773-938
               
               
               Cow position:chr2:37224105-37224267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:773-941
               
               
               Cow position:chr2:24669399-24669569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):14, 98

               
               
               Conread position:773-941
               
               
               Cow position:chr2:39642785-39642947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):76, 128

               
               
               Conread position:773-945
               
               
               Cow position:chr2:42476195-42476030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:773-948
               
               
               Cow position:chr2:47194996-47195175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:773-949
               
               
               Cow position:chr2:21171639-21171811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):165, 61

               
               
               Conread position:773-949
               
               
               Cow position:chr2:38619401-38619229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:773-949
               
               
               Cow position:chr2:66562006-66561829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):166, 0

               
               
               Conread position:773-950
               
               
               Cow position:chr2:485611-485785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):167, 91

               
               
               Conread position:773-950
               
               
               Cow position:chr2:69109314-69109136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:773-951
               
               
               Cow position:chr2:69582844-69582667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):164, 52

               
               
               Conread position:773-952
               
               
               Cow position:chr2:7908852-7909026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:773-952
               
               
               Cow position:chr2:43139621-43139444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:773-955
               
               
               Cow position:chr2:55939661-55939844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):100, 9

               
               
               Conread position:773-959
               
               
               Cow position:chr2:36124468-36124652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):170, 36

               
               
               Conread position:773-959
               
               
               Cow position:chr2:44215538-44215718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:774-892
               
               
               Cow position:chr2:5815983-5815865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:93
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:774-938
               
               
               Cow position:chr2:11217828-11217999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:774-939
               
               
               Cow position:chr2:19164931-19164771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:774-941
               
               
               Cow position:chr2:4207532-4207369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:774-941
               
               
               Cow position:chr2:46015935-46015774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:774-941
               
               
               Cow position:chr2:46316906-46317073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:774-941
               
               
               Cow position:chr2:64562903-64562737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:774-941
               
               
               Cow position:chr2:84344115-84343948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):29, 79

               
               
               Conread position:774-942
               
               
               Cow position:chr2:38913520-38913683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):22, 76

               
               
               Conread position:774-948
               
               
               Cow position:chr2:44197910-44198088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):52, 94

               
               
               Conread position:774-949
               
               
               Cow position:chr2:44313683-44313508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:774-949
               
               
               Cow position:chr2:81913034-81913207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:774-950
               
               
               Cow position:chr2:12186666-12186837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:774-951
               
               
               Cow position:chr2:21327250-21327419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):135, 63

               
               
               Conread position:774-951
               
               
               Cow position:chr2:63568746-63568918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:774-960
               
               
               Cow position:chr2:67047455-67047636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):82, 38

               
               
               Conread position:775-921
               
               
               Cow position:chr2:64473316-64473172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):85, 105

               
               
               Conread position:775-927
               
               
               Cow position:chr2:50368228-50368383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):53, 83

               
               
               Conread position:775-939
               
               
               Cow position:chr2:49345029-49345193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:775-941
               
               
               Cow position:chr2:1364562-1364397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:775-941
               
               
               Cow position:chr2:38162762-38162600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):154, 71

               
               
               Conread position:775-941
               
               
               Cow position:chr2:83273636-83273475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:775-947
               
               
               Cow position:chr2:12873448-12873612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:775-947
               
               
               Cow position:chr2:20337056-20336884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):73, 78

               
               
               Conread position:775-947
               
               
               Cow position:chr2:38884386-38884219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:775-948
               
               
               Cow position:chr2:26574797-26574964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:775-948
               
               
               Cow position:chr2:60181994-60181822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:775-949
               
               
               Cow position:chr2:3773290-3773118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:775-949
               
               
               Cow position:chr2:74079075-74078906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):164, 48

               
               
               Conread position:775-950
               
               
               Cow position:chr2:70771846-70771669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:775-951
               
               
               Cow position:chr2:30127253-30127079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):164, 79

               
               
               Conread position:775-952
               
               
               Cow position:chr2:19191794-19191608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:775-955
               
               
               Cow position:chr2:73923849-73924029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:775-958
               
               
               Cow position:chr2:19320036-19320217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):79, 131

               
               
               Conread position:775-958
               
               
               Cow position:chr2:81480883-81481061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:775-959
               
               
               Cow position:chr2:2031974-2031791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):42, 49

               
               
               Conread position:775-959
               
               
               Cow position:chr2:3128041-3127855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):65, 105

               
               
               Conread position:775-959
               
               
               Cow position:chr2:42897702-42897886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:775-959
               
               
               Cow position:chr2:74070369-74070544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:775-960
               
               
               Cow position:chr2:22759941-22759756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):93, 179

               
               
               Conread position:775-960
               
               
               Cow position:chr2:70657225-70657414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):47, 136

               
               
               Conread position:776-942
               
               
               Cow position:chr2:11435324-11435485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:776-944
               
               
               Cow position:chr2:39095394-39095562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):158, 58

               
               
               Conread position:776-944
               
               
               Cow position:chr2:72359597-72359428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:776-955
               
               
               Cow position:chr2:19842826-19843000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):162, 61

               
               
               Conread position:777-928
               
               
               Cow position:chr2:9476395-9476249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:777-935
               
               
               Cow position:chr2:56837617-56837458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:780-940
               
               
               Cow position:chr2:20919519-20919354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):87, 52

               
               
               Conread position:780-940
               
               
               Cow position:chr2:36376900-36377059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:781-914
               
               
               Cow position:chr2:80235313-80235178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:102
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:782-933
               
               
               Cow position:chr2:41459136-41459289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:782-941
               
               
               Cow position:chr2:15400904-15400748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):57, 68

               
               
               Conread position:782-941
               
               
               Cow position:chr2:24126690-24126845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:782-944
               
               
               Cow position:chr2:27599455-27599299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):76, 70

               
               
               Conread position:782-950
               
               
               Cow position:chr2:11573852-11574022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:782-951
               
               
               Cow position:chr2:5113887-5114056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:782-951
               
               
               Cow position:chr2:16751835-16751666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:782-952
               
               
               Cow position:chr2:40508553-40508381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):159, 0

               
               
               Conread position:782-959
               
               
               Cow position:chr2:41651353-41651175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):36, 75

               
               
               Conread position:782-959
               
               
               Cow position:chr2:71892520-71892697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:782-960
               
               
               Cow position:chr2:29930852-29930673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:782-960
               
               
               Cow position:chr2:38683456-38683280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):125, 70

               
               
               Conread position:782-960
               
               
               Cow position:chr2:39480005-39480182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):59, 124

               
               
               Conread position:783-949
               
               
               Cow position:chr2:22371409-22371571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:783-951
               
               
               Cow position:chr2:12816675-12816845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:783-955
               
               
               Cow position:chr2:73981677-73981844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):161, 69

               
               
               Conread position:784-941
               
               
               Cow position:chr2:34570960-34570803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):67, 94

               
               
               Conread position:784-950
               
               
               Cow position:chr2:68657191-68657357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):41, 121

               
               
               Conread position:787-935
               
               
               Cow position:chr2:14313464-14313612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:109
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):144, 72

               
               
               Conread position:787-941
               
               
               Cow position:chr2:1036340-1036187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:787-941
               
               
               Cow position:chr2:84750758-84750907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:787-945
               
               
               Cow position:chr2:13544043-13544192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:787-950
               
               
               Cow position:chr2:58070041-58070204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):34, 39

               
               
               Conread position:787-958
               
               
               Cow position:chr2:75562056-75562227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):71, 123

               
               
               Conread position:788-937
               
               
               Cow position:chr2:62688188-62688335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:788-941
               
               
               Cow position:chr2:46139370-46139526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:788-959
               
               
               Cow position:chr2:67810992-67810820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):155, 26

               
               
               Conread position:788-959
               
               
               Cow position:chr2:74198281-74198110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):61, 160

               
               
               Conread position:789-958
               
               
               Cow position:chr2:39187422-39187586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:790-939
               
               
               Cow position:chr2:1205356-1205503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:790-950
               
               
               Cow position:chr2:58336171-58336014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:791-938
               
               
               Cow position:chr2:74013018-74012871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:791-951
               
               
               Cow position:chr2:8550626-8550470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:791-958
               
               
               Cow position:chr2:3728079-3728238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:795-960
               
               
               Cow position:chr2:1777818-1777651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:796-941
               
               
               Cow position:chr2:84501312-84501168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:797-952
               
               
               Cow position:chr2:8747889-8747737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:802-949
               
               
               Cow position:chr2:19530831-19530978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:106
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:805-941
               
               
               Cow position:chr2:56021378-56021515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):37, 48

               
               
               Conread position:822-959
               
               
               Cow position:chr2:35299412-35299551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:534-750
               
               
               Cow position:chr20:31261564-31261778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):22, 16

               
               
               Conread position:538-930
               
               
               Cow position:chr20:34597262-34596872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:259
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):33, 20

               
               
               Conread position:541-874
               
               
               Cow position:chr20:41883586-41883908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):28, 50

               
               
               Conread position:547-854
               
               
               Cow position:chr20:40511906-40511598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):30, 7

               
               
               Conread position:548-902
               
               
               Cow position:chr20:8098139-8098493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:244
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):78, 17

               
               
               Conread position:553-789
               
               
               Cow position:chr20:30991995-30992235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):13, 19

               
               
               Conread position:557-924
               
               
               Cow position:chr20:9433453-9433807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:250
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):173, 5

               
               
               Conread position:564-956
               
               
               Cow position:chr20:31289368-31289761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:270
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):28, 253

               
               
               Conread position:566-718
               
               
               Cow position:chr20:40185806-40185658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:566-766
               
               
               Cow position:chr20:9473744-9473544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):56, 19

               
               
               Conread position:566-840
               
               
               Cow position:chr20:38768583-38768319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):156, 57

               
               
               Conread position:566-879
               
               
               Cow position:chr20:11550237-11550546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):24, 59

               
               
               Conread position:566-904
               
               
               Cow position:chr20:40781839-40782172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):60, 78

               
               
               Conread position:566-924
               
               
               Cow position:chr20:30817407-30817746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:250
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):26, 61

               
               
               Conread position:566-935
               
               
               Cow position:chr20:40177120-40177480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):186, 31

               
               
               Conread position:566-936
               
               
               Cow position:chr20:14572486-14572140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:250
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):156, 57

               
               
               Conread position:566-941
               
               
               Cow position:chr20:33435297-33434917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 150

               
               
               Conread position:566-945
               
               
               Cow position:chr20:7659345-7658979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:272
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):28, 32

               
               
               Conread position:566-948
               
               
               Cow position:chr20:33170005-33169623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:272
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):11, 90

               
               
               Conread position:566-950
               
               
               Cow position:chr20:1139903-1139516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 154

               
               
               Conread position:566-950
               
               
               Cow position:chr20:7442253-7441891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:263
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:567-842
               
               
               Cow position:chr20:11542408-11542141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):136, 5

               
               
               Conread position:569-808
               
               
               Cow position:chr20:23103098-23103335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):133, 22

               
               
               Conread position:569-933
               
               
               Cow position:chr20:4621471-4621107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:256
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):5, 191

               
               
               Conread position:569-937
               
               
               Cow position:chr20:4334647-4334300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:256
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):262, 36

               
               
               Conread position:569-959
               
               
               Cow position:chr20:14806763-14807146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 23

               
               
               Conread position:572-706
               
               
               Cow position:chr20:12334251-12334389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:572-939
               
               
               Cow position:chr20:14759786-14759433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):31, 132

               
               
               Conread position:572-948
               
               
               Cow position:chr20:29754660-29755027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:261
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):19, 112

               
               
               Conread position:573-799
               
               
               Cow position:chr20:24000919-24000694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):53, 134

               
               
               Conread position:573-847
               
               
               Cow position:chr20:36040352-36040626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):52, 8

               
               
               Conread position:573-869
               
               
               Cow position:chr20:13983241-13983530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:202
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):13, 53

               
               
               Conread position:574-948
               
               
               Cow position:chr20:29844929-29845304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 89

               
               
               Conread position:574-949
               
               
               Cow position:chr20:32523339-32523713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:249
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):25, 120

               
               
               Conread position:575-886
               
               
               Cow position:chr20:10995982-10996299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):13, 135

               
               
               Conread position:575-948
               
               
               Cow position:chr20:5025068-5024718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:255
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):18, 131

               
               
               Conread position:576-700
               
               
               Cow position:chr20:22721907-22722030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:576-729
               
               
               Cow position:chr20:19410482-19410328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):16, 32

               
               
               Conread position:576-742
               
               
               Cow position:chr20:3781543-3781377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):146, 47

               
               
               Conread position:576-846
               
               
               Cow position:chr20:33144669-33144403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):45, 13

               
               
               Conread position:577-700
               
               
               Cow position:chr20:15235652-15235775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):9, 47

               
               
               Conread position:577-713
               
               
               Cow position:chr20:20312863-20312725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):11, 47

               
               
               Conread position:577-734
               
               
               Cow position:chr20:6848510-6848669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):31, 73

               
               
               Conread position:577-766
               
               
               Cow position:chr20:17904043-17904229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):15, 52

               
               
               Conread position:577-766
               
               
               Cow position:chr20:27003850-27003654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:577-842
               
               
               Cow position:chr20:21928787-21929051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):15, 120

               
               
               Conread position:577-862
               
               
               Cow position:chr20:40127453-40127177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):44, 126

               
               
               Conread position:577-875
               
               
               Cow position:chr20:9537017-9537311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:212
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):15, 137

               
               
               Conread position:577-875
               
               
               Cow position:chr20:32988953-32988651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):80, 11

               
               
               Conread position:577-937
               
               
               Cow position:chr20:33532191-33532528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:242
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):15, 33

               
               
               Conread position:577-941
               
               
               Cow position:chr20:36779848-36779477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):23, 48

               
               
               Conread position:577-941
               
               
               Cow position:chr20:40423207-40422856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:245
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):15, 92

               
               
               Conread position:577-949
               
               
               Cow position:chr20:13994696-13995060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 107

               
               
               Conread position:577-949
               
               
               Cow position:chr20:39418014-39417653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 8

               
               
               Conread position:577-952
               
               
               Cow position:chr20:21019447-21019812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):15, 47

               
               
               Conread position:577-956
               
               
               Cow position:chr20:10200230-10200606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 78

               
               
               Conread position:577-959
               
               
               Cow position:chr20:12996125-12995736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:270
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):15, 21

               
               
               Conread position:577-960
               
               
               Cow position:chr20:14433545-14433160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 118

               
               
               Conread position:578-853
               
               
               Cow position:chr20:19459776-19459508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):111, 46

               
               
               Conread position:578-875
               
               
               Cow position:chr20:39728332-39728630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):15, 144

               
               
               Conread position:578-927
               
               
               Cow position:chr20:20967215-20967547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):152, 22

               
               
               Conread position:579-803
               
               
               Cow position:chr20:28955816-28955594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):40, 93

               
               
               Conread position:579-834
               
               
               Cow position:chr20:34918160-34918409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):166, 9

               
               
               Conread position:581-753
               
               
               Cow position:chr20:32068966-32068794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):5, 124

               
               
               Conread position:581-805
               
               
               Cow position:chr20:22313271-22313051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):7, 43

               
               
               Conread position:581-870
               
               
               Cow position:chr20:7362856-7363137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):7, 43

               
               
               Conread position:581-873
               
               
               Cow position:chr20:14100548-14100260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):38, 85

               
               
               Conread position:581-906
               
               
               Cow position:chr20:42469650-42469970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:212
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):146, 24

               
               
               Conread position:581-941
               
               
               Cow position:chr20:14980624-14980265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:255
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):13, 43

               
               
               Conread position:581-949
               
               
               Cow position:chr20:14879677-14880035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:253
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):11, 42

               
               
               Conread position:581-949
               
               
               Cow position:chr20:21714639-21715039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:279
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):11, 121

               
               
               Conread position:583-926
               
               
               Cow position:chr20:33067484-33067132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:248
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):9, 70

               
               
               Conread position:585-716
               
               
               Cow position:chr20:8020790-8020920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:585-799
               
               
               Cow position:chr20:3331398-3331182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):36, 114

               
               
               Conread position:585-848
               
               
               Cow position:chr20:1575991-1576249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):182, 39

               
               
               Conread position:585-848
               
               
               Cow position:chr20:34108007-34108257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:585-870
               
               
               Cow position:chr20:15565935-15565655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):59, 118

               
               
               Conread position:585-894
               
               
               Cow position:chr20:22484752-22485057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):41, 115

               
               
               Conread position:585-929
               
               
               Cow position:chr20:10188167-10188505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:237
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):137, 49

               
               
               Conread position:585-941
               
               
               Cow position:chr20:12420726-12420377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 38

               
               
               Conread position:585-945
               
               
               Cow position:chr20:398410-398066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:247
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:586-753
               
               
               Cow position:chr20:11864240-11864076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):40, 124

               
               
               Conread position:586-848
               
               
               Cow position:chr20:31323691-31323939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):137, 19

               
               
               Conread position:586-869
               
               
               Cow position:chr20:581028-580747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):144, 37

               
               
               Conread position:589-875
               
               
               Cow position:chr20:20739396-20739108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):33, 66

               
               
               Conread position:589-941
               
               
               Cow position:chr20:12205834-12205502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):117, 7

               
               
               Conread position:591-697
               
               
               Cow position:chr20:35907154-35907048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:591-700
               
               
               Cow position:chr20:14735574-14735682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:91
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:591-736
               
               
               Cow position:chr20:27339963-27340103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):131, 34

               
               
               Conread position:591-752
               
               
               Cow position:chr20:10348644-10348807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):89, 128

               
               
               Conread position:591-752
               
               
               Cow position:chr20:40256866-40257026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):35, 121

               
               
               Conread position:591-757
               
               
               Cow position:chr20:15761048-15760888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):131, 33

               
               
               Conread position:591-761
               
               
               Cow position:chr20:28831866-28832036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):111, 131

               
               
               Conread position:591-766
               
               
               Cow position:chr20:34901467-34901642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):75, 32

               
               
               Conread position:591-783
               
               
               Cow position:chr20:13967362-13967169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:591-793
               
               
               Cow position:chr20:10884462-10884260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):35, 95

               
               
               Conread position:591-797
               
               
               Cow position:chr20:39019593-39019797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):60, 24

               
               
               Conread position:591-802
               
               
               Cow position:chr20:13794887-13795087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):35, 53

               
               
               Conread position:591-815
               
               
               Cow position:chr20:35958543-35958768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):131, 115

               
               
               Conread position:591-816
               
               
               Cow position:chr20:4205865-4206092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):17, 33

               
               
               Conread position:591-816
               
               
               Cow position:chr20:35797507-35797729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):111, 18

               
               
               Conread position:591-820
               
               
               Cow position:chr20:25686450-25686224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):125, 27

               
               
               Conread position:591-847
               
               
               Cow position:chr20:34777082-34777331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):30, 56

               
               
               Conread position:591-848
               
               
               Cow position:chr20:13025712-13025458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):131, 77

               
               
               Conread position:591-855
               
               
               Cow position:chr20:28067528-28067265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):96, 33

               
               
               Conread position:591-858
               
               
               Cow position:chr20:18320893-18320631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):242, 32

               
               
               Conread position:591-867
               
               
               Cow position:chr20:36010691-36010966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):35, 106

               
               
               Conread position:591-869
               
               
               Cow position:chr20:39267061-39266785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):64, 32

               
               
               Conread position:591-875
               
               
               Cow position:chr20:5636382-5636661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):184, 33

               
               
               Conread position:591-875
               
               
               Cow position:chr20:5826839-5827119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):109, 32

               
               
               Conread position:591-876
               
               
               Cow position:chr20:6890614-6890890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):131, 67

               
               
               Conread position:591-882
               
               
               Cow position:chr20:21761674-21761963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):28, 57

               
               
               Conread position:591-899
               
               
               Cow position:chr20:32463623-32463325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:221
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-906
               
               
               Cow position:chr20:20203114-20203422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):111, 32

               
               
               Conread position:591-925
               
               
               Cow position:chr20:4892924-4892594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:225
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):32, 106

               
               
               Conread position:591-925
               
               
               Cow position:chr20:22959444-22959118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):330, 75

               
               
               Conread position:591-930
               
               
               Cow position:chr20:7426289-7425967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:235
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):132, 31

               
               
               Conread position:591-935
               
               
               Cow position:chr20:25162230-25161895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:240
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):129, 32

               
               
               Conread position:591-937
               
               
               Cow position:chr20:3599492-3599164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:245
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):131, 33

               
               
               Conread position:591-937
               
               
               Cow position:chr20:6240623-6240282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-937
               
               
               Cow position:chr20:12582050-12581718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 16

               
               
               Conread position:591-937
               
               
               Cow position:chr20:28605102-28605444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):77, 33

               
               
               Conread position:591-938
               
               
               Cow position:chr20:24398739-24398404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:240
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):35, 107

               
               
               Conread position:591-939
               
               
               Cow position:chr20:8578146-8578495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 32

               
               
               Conread position:591-939
               
               
               Cow position:chr20:31740322-31739977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:242
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):119, 27

               
               
               Conread position:591-941
               
               
               Cow position:chr20:8429643-8429984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:247
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):35, 110

               
               
               Conread position:591-941
               
               
               Cow position:chr20:24711733-24712082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 317

               
               
               Conread position:591-944
               
               
               Cow position:chr20:32847254-32847588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):151, 32

               
               
               Conread position:591-945
               
               
               Cow position:chr20:12239778-12239444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:246
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):94, 28

               
               
               Conread position:591-945
               
               
               Cow position:chr20:13876806-13876463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:247
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):34, 17

               
               
               Conread position:591-945
               
               
               Cow position:chr20:15569048-15568717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:244
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:591-945
               
               
               Cow position:chr20:24069702-24070048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-949
               
               
               Cow position:chr20:6054620-6054257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 311

               
               
               Conread position:591-949
               
               
               Cow position:chr20:17251607-17251969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 132

               
               
               Conread position:591-949
               
               
               Cow position:chr20:20353019-20352660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):35, 96

               
               
               Conread position:591-949
               
               
               Cow position:chr20:28249081-28249433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:242
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):29, 95

               
               
               Conread position:591-949
               
               
               Cow position:chr20:28296189-28296548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 104

               
               
               Conread position:591-949
               
               
               Cow position:chr20:34098060-34097698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 33

               
               
               Conread position:591-950
               
               
               Cow position:chr20:13269525-13269865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:242
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-950
               
               
               Cow position:chr20:23792509-23792851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):330, 32

               
               
               Conread position:591-950
               
               
               Cow position:chr20:38847337-38846976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):37, 108

               
               
               Conread position:591-951
               
               
               Cow position:chr20:4945351-4944997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 75

               
               
               Conread position:591-951
               
               
               Cow position:chr20:8556372-8556018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-951
               
               
               Cow position:chr20:34221378-34221737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:253
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):46, 60

               
               
               Conread position:591-952
               
               
               Cow position:chr20:32583205-32583574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:242
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):103, 189

               
               
               Conread position:591-954
               
               
               Cow position:chr20:746843-747187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):29, 105

               
               
               Conread position:591-956
               
               
               Cow position:chr20:2298879-2298540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):75, 32

               
               
               Conread position:591-956
               
               
               Cow position:chr20:11188907-11188567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:250
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):25, 117

               
               
               Conread position:591-958
               
               
               Cow position:chr20:35145911-35146273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:256
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):35, 126

               
               
               Conread position:591-959
               
               
               Cow position:chr20:6258162-6257809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):172, 32

               
               
               Conread position:591-959
               
               
               Cow position:chr20:6602938-6603288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:248
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):131, 34

               
               
               Conread position:591-959
               
               
               Cow position:chr20:22235213-22235559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):225, 32

               
               
               Conread position:591-959
               
               
               Cow position:chr20:34251785-34251411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 98

               
               
               Conread position:591-959
               
               
               Cow position:chr20:35741648-35742034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:262
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):35, 130

               
               
               Conread position:591-960
               
               
               Cow position:chr20:8546964-8547323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:258
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):120, 32

               
               
               Conread position:591-960
               
               
               Cow position:chr20:41089892-41089532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 33

               
               
               Conread position:592-706
               
               
               Cow position:chr20:11923344-11923229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:95
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:592-796
               
               
               Cow position:chr20:283026-282824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):34, 53

               
               
               Conread position:592-799
               
               
               Cow position:chr20:19146773-19146981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):130, 122

               
               
               Conread position:592-842
               
               
               Cow position:chr20:19363464-19363217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):129, 31

               
               
               Conread position:592-848
               
               
               Cow position:chr20:40691955-40692216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):140, 103

               
               
               Conread position:592-863
               
               
               Cow position:chr20:42458950-42458687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):178, 31

               
               
               Conread position:592-883
               
               
               Cow position:chr20:23064930-23064648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):231, 32

               
               
               Conread position:592-922
               
               
               Cow position:chr20:31746727-31746413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):131, 15

               
               
               Conread position:592-930
               
               
               Cow position:chr20:18551265-18551596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):34, 56

               
               
               Conread position:592-940
               
               
               Cow position:chr20:3254952-3255275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):237, 31

               
               
               Conread position:592-941
               
               
               Cow position:chr20:26996433-26996776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):268, 31

               
               
               Conread position:592-941
               
               
               Cow position:chr20:38817905-38818231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:245
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):128, 33

               
               
               Conread position:592-955
               
               
               Cow position:chr20:31927555-31927202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):31, 53

               
               
               Conread position:592-956
               
               
               Cow position:chr20:28982598-28982959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 31

               
               
               Conread position:592-959
               
               
               Cow position:chr20:5814473-5814825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 54

               
               
               Conread position:593-699
               
               
               Cow position:chr20:17733876-17733769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:87
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:593-700
               
               
               Cow position:chr20:23679248-23679141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:86
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:593-734
               
               
               Cow position:chr20:26469164-26469024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):129, 111

               
               
               Conread position:593-806
               
               
               Cow position:chr20:7210940-7211149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:593-843
               
               
               Cow position:chr20:17845861-17846106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):129, 69

               
               
               Conread position:593-860
               
               
               Cow position:chr20:3321241-3320980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):180, 31

               
               
               Conread position:593-860
               
               
               Cow position:chr20:19616386-19616656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):30, 234

               
               
               Conread position:593-866
               
               
               Cow position:chr20:22978221-22978497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):68, 31

               
               
               Conread position:593-869
               
               
               Cow position:chr20:29805759-29805486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):108, 31

               
               
               Conread position:593-937
               
               
               Cow position:chr20:5998768-5998423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:249
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):136, 30

               
               
               Conread position:593-939
               
               
               Cow position:chr20:25009736-25009393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:234
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):97, 9

               
               
               Conread position:593-941
               
               
               Cow position:chr20:18379282-18379619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:241
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):130, 30

               
               
               Conread position:593-941
               
               
               Cow position:chr20:22064971-22065303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:233
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):23, 31

               
               
               Conread position:593-941
               
               
               Cow position:chr20:23286423-23286089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):133, 30

               
               
               Conread position:593-941
               
               
               Cow position:chr20:28594183-28594534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:245
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):120, 36

               
               
               Conread position:593-941
               
               
               Cow position:chr20:34202549-34202884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):267, 103

               
               
               Conread position:593-941
               
               
               Cow position:chr20:39325289-39325634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:241
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):32, 45

               
               
               Conread position:593-942
               
               
               Cow position:chr20:39398386-39398725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:593-945
               
               
               Cow position:chr20:13829165-13829506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):32, 61

               
               
               Conread position:593-948
               
               
               Cow position:chr20:19328299-19328647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:255
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):26, 15

               
               
               Conread position:593-949
               
               
               Cow position:chr20:3141481-3141825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:593-949
               
               
               Cow position:chr20:11611581-11611931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:246
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):26, 105

               
               
               Conread position:593-949
               
               
               Cow position:chr20:39517907-39518261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:238
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):295, 30

               
               
               Conread position:593-950
               
               
               Cow position:chr20:2819443-2819797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:241
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):112, 81

               
               
               Conread position:593-955
               
               
               Cow position:chr20:19236978-19237328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):348, 77

               
               
               Conread position:593-957
               
               
               Cow position:chr20:38551275-38551636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:253
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):264, 14

               
               
               Conread position:594-812
               
               
               Cow position:chr20:11482234-11482018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):128, 112

               
               
               Conread position:594-867
               
               
               Cow position:chr20:39415645-39415921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):116, 100

               
               
               Conread position:594-873
               
               
               Cow position:chr20:9412391-9412664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):128, 30

               
               
               Conread position:594-939
               
               
               Cow position:chr20:7438951-7438617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:244
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):58, 13

               
               
               Conread position:594-941
               
               
               Cow position:chr20:10208707-10209049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):117, 29

               
               
               Conread position:594-941
               
               
               Cow position:chr20:20983899-20984239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:240
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):262, 31

               
               
               Conread position:594-949
               
               
               Cow position:chr20:3740099-3739759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):32, 83

               
               
               Conread position:594-959
               
               
               Cow position:chr20:35176867-35176515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):32, 51

               
               
               Conread position:594-960
               
               
               Cow position:chr20:15118177-15118539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:248
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):32, 125

               
               
               Conread position:595-873
               
               
               Cow position:chr20:36633719-36633991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):24, 113

               
               
               Conread position:595-930
               
               
               Cow position:chr20:34787041-34786711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):115, 28

               
               
               Conread position:595-941
               
               
               Cow position:chr20:11741398-11741074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:596-719
               
               
               Cow position:chr20:33177086-33177216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:596-780
               
               
               Cow position:chr20:22704195-22704379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):126, 27

               
               
               Conread position:596-948
               
               
               Cow position:chr20:5950740-5950390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 58

               
               
               Conread position:596-948
               
               
               Cow position:chr20:7738323-7737985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:596-948
               
               
               Cow position:chr20:20099693-20099353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:247
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):84, 11

               
               
               Conread position:596-951
               
               
               Cow position:chr20:35710075-35710408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):104, 27

               
               
               Conread position:596-960
               
               
               Cow position:chr20:23846766-23846403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:249
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):98, 27

               
               
               Conread position:598-848
               
               
               Cow position:chr20:38578852-38578612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):112, 9

               
               
               Conread position:601-950
               
               
               Cow position:chr20:32512905-32513256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:234
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):18, 110

               
               
               Conread position:602-753
               
               
               Cow position:chr20:37272621-37272772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):19, 110

               
               
               Conread position:602-948
               
               
               Cow position:chr20:16818326-16818667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:233
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):71, 5

               
               
               Conread position:603-942
               
               
               Cow position:chr20:21428071-21428401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):127, 14

               
               
               Conread position:603-945
               
               
               Cow position:chr20:18622491-18622821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):127, 108

               
               
               Conread position:604-940
               
               
               Cow position:chr20:21345338-21345680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:239
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):14, 24

               
               
               Conread position:604-944
               
               
               Cow position:chr20:39255051-39254716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):151, 106

               
               
               Conread position:604-950
               
               
               Cow position:chr20:11045585-11045925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):96, 151

               
               
               Conread position:604-951
               
               
               Cow position:chr20:38873097-38872746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):115, 91

               
               
               Conread position:607-922
               
               
               Cow position:chr20:6423886-6424177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:607-930
               
               
               Cow position:chr20:18392347-18392026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):143, 94

               
               
               Conread position:607-941
               
               
               Cow position:chr20:8700013-8699681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):15, 106

               
               
               Conread position:608-941
               
               
               Cow position:chr20:36741391-36741704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):116, 16

               
               
               Conread position:608-959
               
               
               Cow position:chr20:35888852-35888498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):147, 94

               
               
               Conread position:609-829
               
               
               Cow position:chr20:34001477-34001257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):93, 102

               
               
               Conread position:610-950
               
               
               Cow position:chr20:28819016-28818684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):16, 47

               
               
               Conread position:611-950
               
               
               Cow position:chr20:33819135-33819479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:235
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):15, 87

               
               
               Conread position:612-855
               
               
               Cow position:chr20:4332054-4332293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):14, 57

               
               
               Conread position:613-944
               
               
               Cow position:chr20:23541237-23540926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:231
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):53, 11

               
               
               Conread position:613-959
               
               
               Cow position:chr20:11548803-11548467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:245
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):15, 96

               
               
               Conread position:613-959
               
               
               Cow position:chr20:20926702-20926362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:240
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):113, 96

               
               
               Conread position:613-959
               
               
               Cow position:chr20:22937392-22937052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:239
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):113, 96

               
               
               Conread position:614-941
               
               
               Cow position:chr20:32665056-32665378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):12, 31

               
               
               Conread position:618-752
               
               
               Cow position:chr20:37357531-37357664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):104, 88

               
               
               Conread position:618-915
               
               
               Cow position:chr20:39153171-39153461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):98, 8

               
               
               Conread position:618-937
               
               
               Cow position:chr20:35192702-35192997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:215
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:618-938
               
               
               Cow position:chr20:11008093-11008412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 56

               
               
               Conread position:618-941
               
               
               Cow position:chr20:11135832-11135510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:231
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):179, 28

               
               
               Conread position:618-942
               
               
               Cow position:chr20:5009663-5009975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):106, 52

               
               
               Conread position:618-951
               
               
               Cow position:chr20:6238713-6238376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):106, 86

               
               
               Conread position:619-879
               
               
               Cow position:chr20:16491997-16492256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):103, 82

               
               
               Conread position:619-939
               
               
               Cow position:chr20:5078549-5078876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):107, 145

               
               
               Conread position:620-929
               
               
               Cow position:chr20:33976408-33976719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):101, 171

               
               
               Conread position:621-926
               
               
               Cow position:chr20:16548350-16548045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):103, 79

               
               
               Conread position:623-831
               
               
               Cow position:chr20:23506540-23506336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:623-941
               
               
               Cow position:chr20:16941362-16941040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:223
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):10, 43

               
               
               Conread position:623-948
               
               
               Cow position:chr20:11359694-11359390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:230
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):132, 18

               
               
               Conread position:623-949
               
               
               Cow position:chr20:38089841-38090166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 79

               
               
               Conread position:624-877
               
               
               Cow position:chr20:14563984-14564232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):106, 71

               
               
               Conread position:624-925
               
               
               Cow position:chr20:12085494-12085204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):175, 76

               
               
               Conread position:624-941
               
               
               Cow position:chr20:6248665-6248357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 42

               
               
               Conread position:625-935
               
               
               Cow position:chr20:20898655-20898353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):105, 18

               
               
               Conread position:626-949
               
               
               Cow position:chr20:27477088-27476762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:218
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):143, 62

               
               
               Conread position:628-947
               
               
               Cow position:chr20:4755898-4755586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):35, 42

               
               
               Conread position:629-842
               
               
               Cow position:chr20:20056549-20056340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):111, 77

               
               
               Conread position:629-940
               
               
               Cow position:chr20:354961-354657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 76

               
               
               Conread position:629-949
               
               
               Cow position:chr20:11751583-11751904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:208
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):17, 158

               
               
               Conread position:632-948
               
               
               Cow position:chr20:23850559-23850871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:220
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):64, 77

               
               
               Conread position:635-796
               
               
               Cow position:chr20:37338856-37339016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):86, 71

               
               
               Conread position:635-879
               
               
               Cow position:chr20:39962517-39962758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:636-951
               
               
               Cow position:chr20:20892725-20892423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):46, 71

               
               
               Conread position:641-955
               
               
               Cow position:chr20:23548693-23549013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):89, 65

               
               
               Conread position:645-950
               
               
               Cow position:chr20:12534790-12534497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):32, 15

               
               
               Conread position:650-860
               
               
               Cow position:chr20:10772160-10772371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):74, 56

               
               
               Conread position:650-941
               
               
               Cow position:chr20:39016920-39016627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):54, 73

               
               
               Conread position:650-958
               
               
               Cow position:chr20:25953222-25953526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):34, 56

               
               
               Conread position:650-959
               
               
               Cow position:chr20:1294074-1293768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):67, 40

               
               
               Conread position:650-959
               
               
               Cow position:chr20:38514738-38515046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:224
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):209, 44

               
               
               Conread position:651-951
               
               
               Cow position:chr20:9376426-9376714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):116, 57

               
               
               Conread position:652-949
               
               
               Cow position:chr20:20125076-20124781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):21, 60

               
               
               Conread position:655-958
               
               
               Cow position:chr20:40157862-40158167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):75, 51

               
               
               Conread position:655-959
               
               
               Cow position:chr20:4999165-4998847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:208
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:655-959
               
               
               Cow position:chr20:13023532-13023243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:655-959
               
               
               Cow position:chr20:29990481-29990188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):285, 41

               
               
               Conread position:658-874
               
               
               Cow position:chr20:7709821-7709604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):47, 199

               
               
               Conread position:658-950
               
               
               Cow position:chr20:34083684-34083972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):65, 44

               
               
               Conread position:673-941
               
               
               Cow position:chr20:12126325-12126059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):57, 24

               
               
               Conread position:673-945
               
               
               Cow position:chr20:14620330-14620060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:193
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):14, 35

               
               
               Conread position:675-945
               
               
               Cow position:chr20:5702703-5702968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):6, 36

               
               
               Conread position:677-955
               
               
               Cow position:chr20:4892123-4891861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):46, 32

               
               
               Conread position:678-930
               
               
               Cow position:chr20:16291678-16291922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:678-956
               
               
               Cow position:chr20:11002380-11002665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):46, 31

               
               
               Conread position:680-948
               
               
               Cow position:chr20:14556770-14556502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):50, 35

               
               
               Conread position:681-949
               
               
               Cow position:chr20:36239228-36239500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:683-951
               
               
               Cow position:chr20:30755268-30755535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):23, 27

               
               
               Conread position:690-959
               
               
               Cow position:chr20:27624006-27624263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):40, 20

               
               
               Conread position:692-941
               
               
               Cow position:chr20:14282911-14283165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:701-930
               
               
               Cow position:chr20:10219647-10219872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:708-940
               
               
               Cow position:chr20:5703483-5703713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):22, 6

               
               
               Conread position:709-941
               
               
               Cow position:chr20:3282879-3283110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):21, 6

               
               
               Conread position:710-944
               
               
               Cow position:chr20:35589677-35589438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):14, 143

               
               
               Conread position:710-948
               
               
               Cow position:chr20:24097014-24097244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):13, 143

               
               
               Conread position:710-951
               
               
               Cow position:chr20:14739806-14739567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):20, 93

               
               
               Conread position:710-958
               
               
               Cow position:chr20:20158149-20158388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):13, 43

               
               
               Conread position:711-948
               
               
               Cow position:chr20:1824616-1824383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):19, 146

               
               
               Conread position:711-950
               
               
               Cow position:chr20:33623538-33623306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):21, 100

               
               
               Conread position:711-950
               
               
               Cow position:chr20:35445090-35444851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):6, 148

               
               
               Conread position:714-937
               
               
               Cow position:chr20:3148701-3148919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):9, 154

               
               
               Conread position:714-952
               
               
               Cow position:chr20:36806538-36806771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):9, 135

               
               
               Conread position:715-956
               
               
               Cow position:chr20:31148181-31148409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):15, 38

               
               
               Conread position:715-959
               
               
               Cow position:chr20:14490269-14490502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:716-942
               
               
               Cow position:chr20:2204665-2204443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):25, 20

               
               
               Conread position:720-951
               
               
               Cow position:chr20:3564184-3564405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:721-949
               
               
               Cow position:chr20:14897762-14897990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):47, 55

               
               
               Conread position:722-950
               
               
               Cow position:chr20:36312482-36312260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):179, 140

               
               
               Conread position:723-941
               
               
               Cow position:chr20:17370224-17370003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):146, 67

               
               
               Conread position:725-949
               
               
               Cow position:chr20:25021457-25021681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):43, 49

               
               
               Conread position:726-941
               
               
               Cow position:chr20:7417137-7416918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:729-951
               
               
               Cow position:chr20:21291693-21291921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):148, 0

               
               
               Conread position:731-945
               
               
               Cow position:chr20:19636141-19635932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):179, 126

               
               
               Conread position:732-938
               
               
               Cow position:chr20:30639747-30639539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:733-941
               
               
               Cow position:chr20:23358454-23358252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:740-940
               
               
               Cow position:chr20:33076779-33076581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):28, 36

               
               
               Conread position:741-946
               
               
               Cow position:chr20:35442237-35442034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:741-959
               
               
               Cow position:chr20:7934329-7934538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:742-950
               
               
               Cow position:chr20:28935592-28935391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:743-949
               
               
               Cow position:chr20:9034169-9033966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:745-956
               
               
               Cow position:chr20:19834781-19834576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):109, 145

               
               
               Conread position:749-949
               
               
               Cow position:chr20:36097574-36097773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:756-948
               
               
               Cow position:chr20:15760513-15760317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:771-945
               
               
               Cow position:chr20:8442380-8442208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):116, 77

               
               
               Conread position:772-949
               
               
               Cow position:chr20:7132702-7132876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:773-934
               
               
               Cow position:chr20:6848972-6849130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):127, 75

               
               
               Conread position:773-941
               
               
               Cow position:chr20:297930-297762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):81, 9

               
               
               Conread position:773-952
               
               
               Cow position:chr20:16977767-16977583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:774-930
               
               
               Cow position:chr20:20459670-20459823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:774-938
               
               
               Cow position:chr20:17544702-17544866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:774-938
               
               
               Cow position:chr20:27315056-27315215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:774-941
               
               
               Cow position:chr20:19919738-19919576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):21, 75

               
               
               Conread position:774-945
               
               
               Cow position:chr20:26387539-26387702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:774-959
               
               
               Cow position:chr20:20590223-20590046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:774-959
               
               
               Cow position:chr20:37357934-37358119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:775-929
               
               
               Cow position:chr20:34847985-34848133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:775-941
               
               
               Cow position:chr20:35310404-35310572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):13, 136

               
               
               Conread position:775-944
               
               
               Cow position:chr20:27323345-27323514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:775-945
               
               
               Cow position:chr20:8409378-8409213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:775-949
               
               
               Cow position:chr20:6370373-6370544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):79, 36

               
               
               Conread position:775-959
               
               
               Cow position:chr20:2798912-2798735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:775-959
               
               
               Cow position:chr20:20202298-20202478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:776-926
               
               
               Cow position:chr20:14607831-14607686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:776-959
               
               
               Cow position:chr20:26041018-26040841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:780-941
               
               
               Cow position:chr20:37609706-37609865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:780-957
               
               
               Cow position:chr20:24883281-24883099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:782-929
               
               
               Cow position:chr20:10469125-10469275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):16, 131

               
               
               Conread position:782-937
               
               
               Cow position:chr20:5104140-5103985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:782-941
               
               
               Cow position:chr20:33462312-33462471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:782-941
               
               
               Cow position:chr20:34271413-34271572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:782-952
               
               
               Cow position:chr20:19201617-19201787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:782-955
               
               
               Cow position:chr20:3035419-3035595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:782-956
               
               
               Cow position:chr20:21344553-21344731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):161, 0

               
               
               Conread position:782-960
               
               
               Cow position:chr20:23966844-23967023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):59, 14

               
               
               Conread position:784-941
               
               
               Cow position:chr20:14755752-14755601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:787-952
               
               
               Cow position:chr20:23506026-23506186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):67, 83

               
               
               Conread position:787-959
               
               
               Cow position:chr20:18500618-18500790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:787-960
               
               
               Cow position:chr20:17733468-17733298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):149, 0

               
               
               Conread position:790-948
               
               
               Cow position:chr20:6473827-6473984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:792-947
               
               
               Cow position:chr20:26424502-26424655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:792-959
               
               
               Cow position:chr20:17524368-17524538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):150, 0

               
               
               Conread position:793-946
               
               
               Cow position:chr20:5268746-5268593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:793-958
               
               
               Cow position:chr20:40442370-40442205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):58, 147

               
               
               Conread position:793-959
               
               
               Cow position:chr20:23062247-23062412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):48, 60

               
               
               Conread position:511-798
               
               
               Cow position:chr21:38664482-38664762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):169, 15

               
               
               Conread position:547-944
               
               
               Cow position:chr21:11114584-11114986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:258
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):45, 7

               
               
               Conread position:562-945
               
               
               Cow position:chr21:2260471-2260081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:264
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):13, 7

               
               
               Conread position:565-875
               
               
               Cow position:chr21:36795493-36795803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):157, 64

               
               
               Conread position:566-767
               
               
               Cow position:chr21:5344545-5344758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):27, 135

               
               
               Conread position:566-792
               
               
               Cow position:chr21:6102369-6102148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):27, 63

               
               
               Conread position:566-805
               
               
               Cow position:chr21:33729325-33729560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):18, 84

               
               
               Conread position:566-822
               
               
               Cow position:chr21:47067002-47066754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):159, 19

               
               
               Conread position:566-829
               
               
               Cow position:chr21:33997331-33997073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):156, 19

               
               
               Conread position:566-848
               
               
               Cow position:chr21:8235654-8235389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):136, 22

               
               
               Conread position:566-848
               
               
               Cow position:chr21:25382902-25383199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:566-875
               
               
               Cow position:chr21:29484874-29485178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):141, 21

               
               
               Conread position:566-930
               
               
               Cow position:chr21:15584523-15584171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 22

               
               
               Conread position:566-930
               
               
               Cow position:chr21:17193869-17193496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 149

               
               
               Conread position:566-941
               
               
               Cow position:chr21:41590666-41590303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:566-947
               
               
               Cow position:chr21:18568759-18568369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:266
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):27, 121

               
               
               Conread position:566-949
               
               
               Cow position:chr21:27146101-27145713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:269
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):27, 128

               
               
               Conread position:568-830
               
               
               Cow position:chr21:44515158-44515419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):9, 56

               
               
               Conread position:569-866
               
               
               Cow position:chr21:7582006-7581714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):107, 18

               
               
               Conread position:569-896
               
               
               Cow position:chr21:21169602-21169275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):5, 88

               
               
               Conread position:569-945
               
               
               Cow position:chr21:10263929-10264302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 56

               
               
               Conread position:570-750
               
               
               Cow position:chr21:31676393-31676574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):18, 117

               
               
               Conread position:571-941
               
               
               Cow position:chr21:47363839-47363461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:265
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):32, 16

               
               
               Conread position:572-941
               
               
               Cow position:chr21:4281973-4281619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:260
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):20, 103

               
               
               Conread position:572-949
               
               
               Cow position:chr21:27521434-27521071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:265
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):20, 109

               
               
               Conread position:574-778
               
               
               Cow position:chr21:45866830-45867042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):17, 40

               
               
               Conread position:574-812
               
               
               Cow position:chr21:25800297-25800536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):64, 50

               
               
               Conread position:574-816
               
               
               Cow position:chr21:30607193-30606945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):49, 22

               
               
               Conread position:574-839
               
               
               Cow position:chr21:45915810-45915554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):19, 57

               
               
               Conread position:574-855
               
               
               Cow position:chr21:10000974-10001255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 136

               
               
               Conread position:574-855
               
               
               Cow position:chr21:13365239-13365522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):18, 43

               
               
               Conread position:574-937
               
               
               Cow position:chr21:47764212-47763867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:242
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:574-938
               
               
               Cow position:chr21:19407690-19407312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:249
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):19, 78

               
               
               Conread position:574-941
               
               
               Cow position:chr21:42841698-42841322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:252
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):20, 72

               
               
               Conread position:574-948
               
               
               Cow position:chr21:643228-643590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 51

               
               
               Conread position:574-949
               
               
               Cow position:chr21:44251931-44251570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 21

               
               
               Conread position:574-959
               
               
               Cow position:chr21:3763838-3763472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:256
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):55, 31

               
               
               Conread position:574-960
               
               
               Cow position:chr21:30835263-30835643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 129

               
               
               Conread position:576-743
               
               
               Cow position:chr21:9980061-9979902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):16, 43

               
               
               Conread position:576-807
               
               
               Cow position:chr21:13488426-13488659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):134, 47

               
               
               Conread position:576-812
               
               
               Cow position:chr21:31662371-31662604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):67, 14

               
               
               Conread position:576-812
               
               
               Cow position:chr21:33727558-33727322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):151, 13

               
               
               Conread position:576-816
               
               
               Cow position:chr21:1591457-1591695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):146, 13

               
               
               Conread position:576-859
               
               
               Cow position:chr21:12723067-12723332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):146, 11

               
               
               Conread position:576-872
               
               
               Cow position:chr21:2657726-2658006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:576-874
               
               
               Cow position:chr21:10633738-10633448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):12, 36

               
               
               Conread position:576-937
               
               
               Cow position:chr21:11131490-11131852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):256, 16

               
               
               Conread position:576-941
               
               
               Cow position:chr21:27569257-27568896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:258
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):16, 48

               
               
               Conread position:576-941
               
               
               Cow position:chr21:42500943-42501315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 15

               
               
               Conread position:576-944
               
               
               Cow position:chr21:17560022-17559650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:254
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):154, 11

               
               
               Conread position:576-945
               
               
               Cow position:chr21:15445172-15444815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:259
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):46, 20

               
               
               Conread position:576-959
               
               
               Cow position:chr21:38918117-38918481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:267
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):16, 72

               
               
               Conread position:576-960
               
               
               Cow position:chr21:29978853-29978486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 48

               
               
               Conread position:576-960
               
               
               Cow position:chr21:40589576-40589199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:261
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):16, 50

               
               
               Conread position:577-700
               
               
               Cow position:chr21:28617491-28617616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):15, 95

               
               
               Conread position:577-717
               
               
               Cow position:chr21:4568189-4568328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):15, 48

               
               
               Conread position:577-752
               
               
               Cow position:chr21:47802350-47802182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):145, 24

               
               
               Conread position:577-817
               
               
               Cow position:chr21:18414954-18415194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):15, 130

               
               
               Conread position:577-846
               
               
               Cow position:chr21:25629008-25628741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):29, 121

               
               
               Conread position:577-940
               
               
               Cow position:chr21:28734008-28733650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:248
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):11, 47

               
               
               Conread position:577-941
               
               
               Cow position:chr21:14452140-14452496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 55

               
               
               Conread position:577-941
               
               
               Cow position:chr21:28244375-28244730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 18

               
               
               Conread position:577-941
               
               
               Cow position:chr21:47009336-47008984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):44, 11

               
               
               Conread position:577-951
               
               
               Cow position:chr21:12462066-12461695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 47

               
               
               Conread position:577-951
               
               
               Cow position:chr21:27810312-27810665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:259
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):15, 47

               
               
               Conread position:578-816
               
               
               Cow position:chr21:34391070-34390834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:181
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):14, 46

               
               
               Conread position:578-941
               
               
               Cow position:chr21:5898493-5898146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:245
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):148, 46

               
               
               Conread position:579-779
               
               
               Cow position:chr21:3381178-3380974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:579-797
               
               
               Cow position:chr21:10727184-10727399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):146, 44

               
               
               Conread position:579-951
               
               
               Cow position:chr21:37706508-37706138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 56

               
               
               Conread position:580-805
               
               
               Cow position:chr21:46552199-46551973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):18, 119

               
               
               Conread position:581-753
               
               
               Cow position:chr21:2785868-2785698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):11, 47

               
               
               Conread position:581-803
               
               
               Cow position:chr21:18845107-18844885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:581-805
               
               
               Cow position:chr21:45330696-45330477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):11, 123

               
               
               Conread position:581-855
               
               
               Cow position:chr21:28626149-28626416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):153, 42

               
               
               Conread position:581-858
               
               
               Cow position:chr21:21077234-21077492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):10, 44

               
               
               Conread position:581-866
               
               
               Cow position:chr21:23322172-23321887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):11, 81

               
               
               Conread position:581-927
               
               
               Cow position:chr21:3361103-3360767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:246
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):11, 21

               
               
               Conread position:581-958
               
               
               Cow position:chr21:6833956-6834331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 130

               
               
               Conread position:581-959
               
               
               Cow position:chr21:33629-34014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 15

               
               
               Conread position:582-937
               
               
               Cow position:chr21:30849039-30848689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):22, 42

               
               
               Conread position:584-862
               
               
               Cow position:chr21:45262900-45262623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):68, 39

               
               
               Conread position:585-742
               
               
               Cow position:chr21:912054-911899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:585-761
               
               
               Cow position:chr21:16612538-16612711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:585-785
               
               
               Cow position:chr21:2679469-2679667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):138, 38

               
               
               Conread position:585-830
               
               
               Cow position:chr21:41878384-41878624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:585-855
               
               
               Cow position:chr21:22465110-22465370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:585-941
               
               
               Cow position:chr21:32297594-32297245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):269, 38

               
               
               Conread position:585-942
               
               
               Cow position:chr21:23586793-23587136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 41

               
               
               Conread position:585-945
               
               
               Cow position:chr21:23568130-23568492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:254
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):29, 102

               
               
               Conread position:585-954
               
               
               Cow position:chr21:24296856-24296489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:252
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):66, 25

               
               
               Conread position:585-959
               
               
               Cow position:chr21:41974462-41974088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:267
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):138, 38

               
               
               Conread position:587-939
               
               
               Cow position:chr21:36910654-36910998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):31, 14

               
               
               Conread position:588-904
               
               
               Cow position:chr21:17722933-17723242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):108, 38

               
               
               Conread position:589-750
               
               
               Cow position:chr21:33360119-33359959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):7, 106

               
               
               Conread position:589-824
               
               
               Cow position:chr21:16187890-16187658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):133, 6

               
               
               Conread position:589-952
               
               
               Cow position:chr21:45971256-45970905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 119

               
               
               Conread position:591-698
               
               
               Cow position:chr21:9998800-9998692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:92
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):31, 80

               
               
               Conread position:591-700
               
               
               Cow position:chr21:39401513-39401621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:94
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:591-719
               
               
               Cow position:chr21:37361558-37361430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:591-720
               
               
               Cow position:chr21:42190258-42190127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:591-743
               
               
               Cow position:chr21:42913825-42913675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):118, 34

               
               
               Conread position:591-761
               
               
               Cow position:chr21:13898103-13898274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:591-766
               
               
               Cow position:chr21:5985399-5985227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):28, 90

               
               
               Conread position:591-767
               
               
               Cow position:chr21:18041929-18041755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-767
               
               
               Cow position:chr21:39450246-39450067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):30, 80

               
               
               Conread position:591-785
               
               
               Cow position:chr21:13495459-13495653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):131, 123

               
               
               Conread position:591-791
               
               
               Cow position:chr21:24607308-24607502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):7, 74

               
               
               Conread position:591-793
               
               
               Cow position:chr21:37014484-37014288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):131, 93

               
               
               Conread position:591-799
               
               
               Cow position:chr21:5636799-5636596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):163, 33

               
               
               Conread position:591-799
               
               
               Cow position:chr21:17856466-17856668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):131, 31

               
               
               Conread position:591-802
               
               
               Cow position:chr21:36163044-36162832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):35, 101

               
               
               Conread position:591-819
               
               
               Cow position:chr21:36789716-36789939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):107, 33

               
               
               Conread position:591-820
               
               
               Cow position:chr21:20192816-20193039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:591-820
               
               
               Cow position:chr21:43357342-43357111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):34, 94

               
               
               Conread position:591-840
               
               
               Cow position:chr21:28989533-28989778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):125, 33

               
               
               Conread position:591-842
               
               
               Cow position:chr21:15911318-15911567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):45, 33

               
               
               Conread position:591-842
               
               
               Cow position:chr21:38121020-38121268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):132, 26

               
               
               Conread position:591-845
               
               
               Cow position:chr21:28955429-28955671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):83, 22

               
               
               Conread position:591-855
               
               
               Cow position:chr21:395789-396047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:195
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-855
               
               
               Cow position:chr21:10118476-10118745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):21, 105

               
               
               Conread position:591-860
               
               
               Cow position:chr21:1058996-1059261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):257, 115

               
               
               Conread position:591-860
               
               
               Cow position:chr21:15976551-15976817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):27, 59

               
               
               Conread position:591-860
               
               
               Cow position:chr21:26648088-26647831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):15, 78

               
               
               Conread position:591-870
               
               
               Cow position:chr21:41597738-41598006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):28, 85

               
               
               Conread position:591-872
               
               
               Cow position:chr21:27624628-27624892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-875
               
               
               Cow position:chr21:24642437-24642714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):35, 120

               
               
               Conread position:591-875
               
               
               Cow position:chr21:30250271-30250004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):265, 32

               
               
               Conread position:591-875
               
               
               Cow position:chr21:33562932-33563203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:591-875
               
               
               Cow position:chr21:42384428-42384709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):131, 115

               
               
               Conread position:591-903
               
               
               Cow position:chr21:9416165-9416475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 116

               
               
               Conread position:591-903
               
               
               Cow position:chr21:19258748-19259041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):131, 55

               
               
               Conread position:591-921
               
               
               Cow position:chr21:46912457-46912792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):9, 35

               
               
               Conread position:591-923
               
               
               Cow position:chr21:41198488-41198152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:227
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):35, 326

               
               
               Conread position:591-929
               
               
               Cow position:chr21:8351384-8351043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):139, 32

               
               
               Conread position:591-929
               
               
               Cow position:chr21:14760492-14760808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):136, 74

               
               
               Conread position:591-929
               
               
               Cow position:chr21:31691401-31691723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):111, 25

               
               
               Conread position:591-929
               
               
               Cow position:chr21:34151499-34151827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):28, 107

               
               
               Conread position:591-929
               
               
               Cow position:chr21:41107843-41107525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):26, 34

               
               
               Conread position:591-930
               
               
               Cow position:chr21:18790641-18790312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):131, 111

               
               
               Conread position:591-935
               
               
               Cow position:chr21:20160602-20160935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 34

               
               
               Conread position:591-935
               
               
               Cow position:chr21:22121441-22121759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:591-935
               
               
               Cow position:chr21:47465202-47464862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 26

               
               
               Conread position:591-936
               
               
               Cow position:chr21:16152350-16152698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 190

               
               
               Conread position:591-937
               
               
               Cow position:chr21:14464498-14464845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:246
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):46, 68

               
               
               Conread position:591-937
               
               
               Cow position:chr21:24598580-24598902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:232
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-937
               
               
               Cow position:chr21:29214232-29213900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):133, 32

               
               
               Conread position:591-937
               
               
               Cow position:chr21:36756517-36756867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:247
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):177, 89

               
               
               Conread position:591-937
               
               
               Cow position:chr21:38900697-38901022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:238
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:591-937
               
               
               Cow position:chr21:42135701-42135360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):106, 32

               
               
               Conread position:591-939
               
               
               Cow position:chr21:17183839-17184179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 118

               
               
               Conread position:591-939
               
               
               Cow position:chr21:48637841-48637495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):93, 75

               
               
               Conread position:591-940
               
               
               Cow position:chr21:11645051-11644704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 32

               
               
               Conread position:591-940
               
               
               Cow position:chr21:29069410-29069061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr21:3585444-3585101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr21:5426858-5427190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:244
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):33, 116

               
               
               Conread position:591-941
               
               
               Cow position:chr21:7673045-7673376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):130, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr21:8206691-8207020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:232
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):118, 34

               
               
               Conread position:591-941
               
               
               Cow position:chr21:10004966-10004620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 19

               
               
               Conread position:591-941
               
               
               Cow position:chr21:12154056-12154388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):35, 56

               
               
               Conread position:591-941
               
               
               Cow position:chr21:13089550-13089208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:245
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):131, 38

               
               
               Conread position:591-941
               
               
               Cow position:chr21:17364557-17364215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:238
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):35, 112

               
               
               Conread position:591-941
               
               
               Cow position:chr21:20032917-20032569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):240, 100

               
               
               Conread position:591-941
               
               
               Cow position:chr21:20260402-20260034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr21:25127520-25127874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 67

               
               
               Conread position:591-941
               
               
               Cow position:chr21:31253462-31253797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:241
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):295, 109

               
               
               Conread position:591-941
               
               
               Cow position:chr21:32339819-32339482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:591-941
               
               
               Cow position:chr21:33982886-33982551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:246
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):133, 31

               
               
               Conread position:591-941
               
               
               Cow position:chr21:39403618-39403265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:245
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):99, 264

               
               
               Conread position:591-941
               
               
               Cow position:chr21:49700117-49699774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 94

               
               
               Conread position:591-944
               
               
               Cow position:chr21:17511697-17512040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:241
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):196, 7

               
               
               Conread position:591-944
               
               
               Cow position:chr21:41155782-41156137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 33

               
               
               Conread position:591-945
               
               
               Cow position:chr21:17875273-17874923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:591-945
               
               
               Cow position:chr21:20152866-20153224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 127

               
               
               Conread position:591-945
               
               
               Cow position:chr21:23535632-23535980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 64

               
               
               Conread position:591-948
               
               
               Cow position:chr21:22210325-22209973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:244
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):139, 43

               
               
               Conread position:591-948
               
               
               Cow position:chr21:27124206-27123855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:232
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):35, 53

               
               
               Conread position:591-949
               
               
               Cow position:chr21:6017535-6017902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:244
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):35, 255

               
               
               Conread position:591-949
               
               
               Cow position:chr21:13840241-13840599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:244
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 126

               
               
               Conread position:591-949
               
               
               Cow position:chr21:25344790-25345135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):237, 79

               
               
               Conread position:591-949
               
               
               Cow position:chr21:40899259-40899612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:237
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):53, 33

               
               
               Conread position:591-950
               
               
               Cow position:chr21:46956-47320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 34

               
               
               Conread position:591-950
               
               
               Cow position:chr21:24858234-24858587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:242
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-951
               
               
               Cow position:chr21:957591-957942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 52

               
               
               Conread position:591-951
               
               
               Cow position:chr21:9310963-9311331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:252
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):125, 106

               
               
               Conread position:591-951
               
               
               Cow position:chr21:16914694-16915056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:257
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):141, 92

               
               
               Conread position:591-951
               
               
               Cow position:chr21:34010477-34010122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):113, 31

               
               
               Conread position:591-951
               
               
               Cow position:chr21:44825966-44825600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:259
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):139, 36

               
               
               Conread position:591-955
               
               
               Cow position:chr21:4399716-4400072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:257
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):35, 116

               
               
               Conread position:591-956
               
               
               Cow position:chr21:34653996-34654351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 33

               
               
               Conread position:591-956
               
               
               Cow position:chr21:45906702-45906342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-958
               
               
               Cow position:chr21:81998-82339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:247
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-958
               
               
               Cow position:chr21:23980263-23979899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 107

               
               
               Conread position:591-958
               
               
               Cow position:chr21:29002239-29001867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:258
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):133, 32

               
               
               Conread position:591-959
               
               
               Cow position:chr21:9301131-9301505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):94, 122

               
               
               Conread position:591-959
               
               
               Cow position:chr21:27863597-27863240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 81

               
               
               Conread position:591-959
               
               
               Cow position:chr21:30231779-30231415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:261
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):34, 97

               
               
               Conread position:591-960
               
               
               Cow position:chr21:937953-938301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:591-960
               
               
               Cow position:chr21:6051426-6051784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):325, 32

               
               
               Conread position:591-960
               
               
               Cow position:chr21:9036214-9036582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:255
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):33, 118

               
               
               Conread position:592-753
               
               
               Cow position:chr21:27743663-27743827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):27, 121

               
               
               Conread position:592-835
               
               
               Cow position:chr21:9940274-9940029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):59, 32

               
               
               Conread position:592-842
               
               
               Cow position:chr21:12801827-12801580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):110, 31

               
               
               Conread position:592-842
               
               
               Cow position:chr21:30990350-30990120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:592-855
               
               
               Cow position:chr21:3818127-3818388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):30, 114

               
               
               Conread position:592-889
               
               
               Cow position:chr21:18929620-18929907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):118, 34

               
               
               Conread position:592-896
               
               
               Cow position:chr21:41579671-41579973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:214
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):34, 82

               
               
               Conread position:592-903
               
               
               Cow position:chr21:21982729-21983033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):118, 34

               
               
               Conread position:592-929
               
               
               Cow position:chr21:28237794-28237448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:234
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):29, 54

               
               
               Conread position:592-933
               
               
               Cow position:chr21:37790082-37789747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:235
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):27, 18

               
               
               Conread position:592-941
               
               
               Cow position:chr21:10816942-10817297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):105, 323

               
               
               Conread position:592-941
               
               
               Cow position:chr21:11740196-11739858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 31

               
               
               Conread position:592-941
               
               
               Cow position:chr21:22194195-22193831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:592-941
               
               
               Cow position:chr21:40432368-40432727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):8, 89

               
               
               Conread position:592-949
               
               
               Cow position:chr21:18155650-18155293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:243
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):34, 105

               
               
               Conread position:592-949
               
               
               Cow position:chr21:22856138-22856495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:250
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):27, 60

               
               
               Conread position:592-950
               
               
               Cow position:chr21:9477082-9477437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:252
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):78, 109

               
               
               Conread position:592-951
               
               
               Cow position:chr21:27229875-27229531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 33

               
               
               Conread position:592-951
               
               
               Cow position:chr21:30222264-30222615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 31

               
               
               Conread position:592-951
               
               
               Cow position:chr21:30592384-30592041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):131, 37

               
               
               Conread position:592-955
               
               
               Cow position:chr21:13048277-13047913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):34, 44

               
               
               Conread position:592-959
               
               
               Cow position:chr21:15545450-15545081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:250
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):68, 132

               
               
               Conread position:592-959
               
               
               Cow position:chr21:19196243-19195876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 110

               
               
               Conread position:592-960
               
               
               Cow position:chr21:47760699-47761053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):34, 53

               
               
               Conread position:593-714
               
               
               Cow position:chr21:18494890-18495011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):114, 30

               
               
               Conread position:593-761
               
               
               Cow position:chr21:12960978-12960813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):112, 30

               
               
               Conread position:593-795
               
               
               Cow position:chr21:13489566-13489766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):129, 114

               
               
               Conread position:593-809
               
               
               Cow position:chr21:724965-724751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):118, 30

               
               
               Conread position:593-809
               
               
               Cow position:chr21:35354454-35354665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):81, 30

               
               
               Conread position:593-816
               
               
               Cow position:chr21:19363542-19363318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):55, 30

               
               
               Conread position:593-817
               
               
               Cow position:chr21:20418764-20418540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):133, 116

               
               
               Conread position:593-848
               
               
               Cow position:chr21:37345180-37344928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):26, 112

               
               
               Conread position:593-855
               
               
               Cow position:chr21:46140962-46141228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):33, 124

               
               
               Conread position:593-894
               
               
               Cow position:chr21:9990437-9990727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):129, 30

               
               
               Conread position:593-903
               
               
               Cow position:chr21:42007545-42007234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:211
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):26, 122

               
               
               Conread position:593-926
               
               
               Cow position:chr21:10410139-10410471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 192

               
               
               Conread position:593-927
               
               
               Cow position:chr21:10561663-10561336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):108, 31

               
               
               Conread position:593-937
               
               
               Cow position:chr21:6997859-6998200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):34, 120

               
               
               Conread position:593-937
               
               
               Cow position:chr21:28924035-28924383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:250
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):139, 50

               
               
               Conread position:593-941
               
               
               Cow position:chr21:802374-802060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:241
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):316, 30

               
               
               Conread position:593-941
               
               
               Cow position:chr21:18800608-18800267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):163, 30

               
               
               Conread position:593-941
               
               
               Cow position:chr21:37299390-37299723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):110, 27

               
               
               Conread position:593-941
               
               
               Cow position:chr21:38728085-38728419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:239
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):26, 15

               
               
               Conread position:593-949
               
               
               Cow position:chr21:40786595-40786951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):33, 52

               
               
               Conread position:593-950
               
               
               Cow position:chr21:18289585-18289948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:243
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):107, 31

               
               
               Conread position:593-951
               
               
               Cow position:chr21:13585148-13584779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:262
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):56, 35

               
               
               Conread position:593-951
               
               
               Cow position:chr21:47714086-47713734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 15

               
               
               Conread position:594-894
               
               
               Cow position:chr21:45330026-45329738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):34, 78

               
               
               Conread position:594-918
               
               
               Cow position:chr21:9698164-9697838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):29, 103

               
               
               Conread position:594-930
               
               
               Cow position:chr21:22860921-22861244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:236
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):109, 29

               
               
               Conread position:594-937
               
               
               Cow position:chr21:39664467-39664139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):136, 41

               
               
               Conread position:594-941
               
               
               Cow position:chr21:38449527-38449188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:246
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):10, 32

               
               
               Conread position:594-950
               
               
               Cow position:chr21:17637824-17638167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):28, 51

               
               
               Conread position:594-952
               
               
               Cow position:chr21:19067451-19067809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):32, 66

               
               
               Conread position:594-959
               
               
               Cow position:chr21:22718857-22718500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 74

               
               
               Conread position:595-741
               
               
               Cow position:chr21:28882057-28882203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):26, 10

               
               
               Conread position:595-778
               
               
               Cow position:chr21:23192591-23192409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:595-836
               
               
               Cow position:chr21:4998564-4998334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):11, 30

               
               
               Conread position:596-695
               
               
               Cow position:chr21:32237218-32237317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:83
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:596-750
               
               
               Cow position:chr21:8985470-8985627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):106, 58

               
               
               Conread position:596-847
               
               
               Cow position:chr21:44214048-44214298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):109, 27

               
               
               Conread position:596-847
               
               
               Cow position:chr21:45355760-45356005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:596-875
               
               
               Cow position:chr21:26244844-26245114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:596-902
               
               
               Cow position:chr21:36909858-36910155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):296, 102

               
               
               Conread position:596-940
               
               
               Cow position:chr21:44658506-44658823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):58, 27

               
               
               Conread position:596-941
               
               
               Cow position:chr21:36762965-36763325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:244
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):47, 12

               
               
               Conread position:596-955
               
               
               Cow position:chr21:41621048-41621406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 28

               
               
               Conread position:596-956
               
               
               Cow position:chr21:11027430-11027078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:249
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):130, 99

               
               
               Conread position:596-958
               
               
               Cow position:chr21:16569825-16570168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:246
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):91, 27

               
               
               Conread position:596-959
               
               
               Cow position:chr21:19702648-19703008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:246
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):95, 83

               
               
               Conread position:596-960
               
               
               Cow position:chr21:46849202-46848850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:242
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):336, 47

               
               
               Conread position:597-761
               
               
               Cow position:chr21:20925582-20925419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):105, 112

               
               
               Conread position:597-900
               
               
               Cow position:chr21:4280747-4280453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):113, 26

               
               
               Conread position:597-930
               
               
               Cow position:chr21:5482681-5483014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):80, 73

               
               
               Conread position:598-941
               
               
               Cow position:chr21:6713599-6713261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:240
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):162, 26

               
               
               Conread position:598-959
               
               
               Cow position:chr21:24343339-24342984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):26, 89

               
               
               Conread position:598-959
               
               
               Cow position:chr21:47719373-47719020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:257
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):101, 25

               
               
               Conread position:599-855
               
               
               Cow position:chr21:45921132-45920880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):10, 29

               
               
               Conread position:599-949
               
               
               Cow position:chr21:10743317-10743660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:227
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):27, 67

               
               
               Conread position:600-941
               
               
               Cow position:chr21:1511219-1511549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):85, 27

               
               
               Conread position:600-950
               
               
               Cow position:chr21:40266049-40266396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 108

               
               
               Conread position:602-866
               
               
               Cow position:chr21:7564390-7564112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:602-879
               
               
               Cow position:chr21:18780043-18779774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):17, 103

               
               
               Conread position:602-903
               
               
               Cow position:chr21:4905039-4904739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):26, 105

               
               
               Conread position:603-948
               
               
               Cow position:chr21:641514-641854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 105

               
               
               Conread position:604-941
               
               
               Cow position:chr21:37640487-37640829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):23, 106

               
               
               Conread position:604-950
               
               
               Cow position:chr21:23672684-23673015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:605-941
               
               
               Cow position:chr21:32559426-32559108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):286, 18

               
               
               Conread position:606-832
               
               
               Cow position:chr21:35899776-35899998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):14, 90

               
               
               Conread position:607-807
               
               
               Cow position:chr21:28477558-28477761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):134, 110

               
               
               Conread position:607-809
               
               
               Cow position:chr21:11198214-11198014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):116, 99

               
               
               Conread position:607-938
               
               
               Cow position:chr21:21686353-21686677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:234
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):108, 56

               
               
               Conread position:607-951
               
               
               Cow position:chr21:7394316-7394641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):115, 107

               
               
               Conread position:607-952
               
               
               Cow position:chr21:41140783-41140440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 100

               
               
               Conread position:607-957
               
               
               Cow position:chr21:10070999-10070646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:244
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):67, 62

               
               
               Conread position:608-944
               
               
               Cow position:chr21:23606611-23606933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):125, 54

               
               
               Conread position:612-875
               
               
               Cow position:chr21:16696308-16696575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):101, 85

               
               
               Conread position:612-948
               
               
               Cow position:chr21:8349268-8349592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):107, 11

               
               
               Conread position:612-948
               
               
               Cow position:chr21:9707333-9706997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):104, 85

               
               
               Conread position:612-949
               
               
               Cow position:chr21:8426381-8426714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:240
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):34, 11

               
               
               Conread position:613-820
               
               
               Cow position:chr21:297694-297899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):109, 10

               
               
               Conread position:613-929
               
               
               Cow position:chr21:10292431-10292745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):7, 85

               
               
               Conread position:613-937
               
               
               Cow position:chr21:11779589-11779279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):246, 71

               
               
               Conread position:613-950
               
               
               Cow position:chr21:18060016-18059687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):117, 50

               
               
               Conread position:614-935
               
               
               Cow position:chr21:10114391-10114075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:227
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):44, 10

               
               
               Conread position:614-941
               
               
               Cow position:chr21:742227-742537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:234
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):9, 35

               
               
               Conread position:616-917
               
               
               Cow position:chr21:7377984-7377684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 10

               
               
               Conread position:616-930
               
               
               Cow position:chr21:16604363-16604062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):114, 8

               
               
               Conread position:617-739
               
               
               Cow position:chr21:14228626-14228503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:95
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:617-941
               
               
               Cow position:chr21:22014131-22014454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):81, 69

               
               
               Conread position:618-754
               
               
               Cow position:chr21:7391331-7391198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:618-859
               
               
               Cow position:chr21:5153575-5153804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:618-916
               
               
               Cow position:chr21:6624105-6624397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:194
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:618-937
               
               
               Cow position:chr21:5464692-5465006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):82, 105

               
               
               Conread position:618-945
               
               
               Cow position:chr21:17890248-17890570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:618-949
               
               
               Cow position:chr21:2103600-2103951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):59, 13

               
               
               Conread position:619-937
               
               
               Cow position:chr21:868979-868660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 66

               
               
               Conread position:619-959
               
               
               Cow position:chr21:5238332-5238668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):104, 83

               
               
               Conread position:620-959
               
               
               Cow position:chr21:13656682-13656352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:231
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):117, 51

               
               
               Conread position:621-941
               
               
               Cow position:chr21:28919576-28919268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 85

               
               
               Conread position:623-941
               
               
               Cow position:chr21:41522457-41522150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):242, 83

               
               
               Conread position:624-949
               
               
               Cow position:chr21:11174168-11174515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:232
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:624-949
               
               
               Cow position:chr21:19060136-19059820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:227
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:626-941
               
               
               Cow position:chr21:21907476-21907178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):73, 84

               
               
               Conread position:627-945
               
               
               Cow position:chr21:29014959-29014650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):77, 88

               
               
               Conread position:628-869
               
               
               Cow position:chr21:28429398-28429634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):41, 46

               
               
               Conread position:628-944
               
               
               Cow position:chr21:33580376-33580677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:220
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):95, 80

               
               
               Conread position:628-950
               
               
               Cow position:chr21:14597461-14597148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):97, 81

               
               
               Conread position:631-960
               
               
               Cow position:chr21:41617782-41617457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:635-929
               
               
               Cow position:chr21:10883962-10883667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):262, 0

               
               
               Conread position:636-959
               
               
               Cow position:chr21:10657139-10656820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):76, 109

               
               
               Conread position:639-951
               
               
               Cow position:chr21:43388317-43388634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):84, 66

               
               
               Conread position:639-957
               
               
               Cow position:chr21:36696125-36695808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):7, 71

               
               
               Conread position:641-929
               
               
               Cow position:chr21:6317712-6317434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:649-939
               
               
               Cow position:chr21:18318689-18318974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):81, 48

               
               
               Conread position:650-875
               
               
               Cow position:chr21:10538273-10538055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:650-939
               
               
               Cow position:chr21:38720229-38720510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:202
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):206, 58

               
               
               Conread position:650-945
               
               
               Cow position:chr21:28030265-28030546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):73, 52

               
               
               Conread position:650-951
               
               
               Cow position:chr21:71563-71861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:214
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):80, 21

               
               
               Conread position:650-952
               
               
               Cow position:chr21:14126265-14126544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):27, 12

               
               
               Conread position:652-949
               
               
               Cow position:chr21:16083138-16082841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):28, 64

               
               
               Conread position:652-959
               
               
               Cow position:chr21:44829783-44829473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):70, 38

               
               
               Conread position:655-944
               
               
               Cow position:chr21:8950162-8950459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):48, 59

               
               
               Conread position:656-921
               
               
               Cow position:chr21:829227-828967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:182
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):61, 14

               
               
               Conread position:658-938
               
               
               Cow position:chr21:12559682-12559965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):64, 57

               
               
               Conread position:658-960
               
               
               Cow position:chr21:44724380-44724092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):279, 60

               
               
               Conread position:661-941
               
               
               Cow position:chr21:19624387-19624666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):63, 29

               
               
               Conread position:663-944
               
               
               Cow position:chr21:10147981-10148265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):67, 46

               
               
               Conread position:664-941
               
               
               Cow position:chr21:7768425-7768689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):39, 113

               
               
               Conread position:668-946
               
               
               Cow position:chr21:13588757-13589030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:194
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):63, 45

               
               
               Conread position:670-941
               
               
               Cow position:chr21:8431105-8430834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:192
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):52, 27

               
               
               Conread position:673-937
               
               
               Cow position:chr21:12739079-12739347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):63, 33

               
               
               Conread position:673-937
               
               
               Cow position:chr21:46599359-46599617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):50, 41

               
               
               Conread position:673-956
               
               
               Cow position:chr21:7169686-7169965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):57, 33

               
               
               Conread position:676-929
               
               
               Cow position:chr21:41287792-41287545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):48, 38

               
               
               Conread position:677-959
               
               
               Cow position:chr21:44074697-44074973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):46, 20

               
               
               Conread position:681-938
               
               
               Cow position:chr21:39319406-39319150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):15, 29

               
               
               Conread position:684-959
               
               
               Cow position:chr21:31652403-31652668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:686-958
               
               
               Cow position:chr21:36682334-36682608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):27, 223

               
               
               Conread position:694-945
               
               
               Cow position:chr21:28907523-28907282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):111, 20

               
               
               Conread position:698-939
               
               
               Cow position:chr21:17252952-17252716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:698-941
               
               
               Cow position:chr21:21615806-21616039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:702-960
               
               
               Cow position:chr21:17403826-17403564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:703-929
               
               
               Cow position:chr21:24266537-24266310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):154, 11

               
               
               Conread position:703-952
               
               
               Cow position:chr21:46809744-46809490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):20, 190

               
               
               Conread position:705-941
               
               
               Cow position:chr21:16498549-16498778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):18, 9

               
               
               Conread position:706-944
               
               
               Cow position:chr21:42328637-42328395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):12, 150

               
               
               Conread position:706-951
               
               
               Cow position:chr21:13580446-13580688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):24, 8

               
               
               Conread position:708-948
               
               
               Cow position:chr21:37928683-37928921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):120, 17

               
               
               Conread position:709-939
               
               
               Cow position:chr21:24797690-24797916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):22, 60

               
               
               Conread position:709-949
               
               
               Cow position:chr21:17842963-17842724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:709-955
               
               
               Cow position:chr21:8713927-8713678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):7, 75

               
               
               Conread position:709-958
               
               
               Cow position:chr21:6584106-6583860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):7, 102

               
               
               Conread position:710-928
               
               
               Cow position:chr21:7066347-7066135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):12, 59

               
               
               Conread position:710-940
               
               
               Cow position:chr21:22850956-22851177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):13, 29

               
               
               Conread position:710-949
               
               
               Cow position:chr21:40475534-40475772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:710-955
               
               
               Cow position:chr21:6851206-6851441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):15, 137

               
               
               Conread position:710-955
               
               
               Cow position:chr21:41610201-41610457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:711-945
               
               
               Cow position:chr21:12310512-12310740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):11, 64

               
               
               Conread position:711-951
               
               
               Cow position:chr21:9278558-9278801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:711-955
               
               
               Cow position:chr21:20213741-20213492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):19, 8

               
               
               Conread position:711-960
               
               
               Cow position:chr21:42144861-42145099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):19, 37

               
               
               Conread position:712-941
               
               
               Cow position:chr21:39393784-39394012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):11, 147

               
               
               Conread position:714-959
               
               
               Cow position:chr21:27677520-27677764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):10, 54

               
               
               Conread position:715-929
               
               
               Cow position:chr21:8241951-8242166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:716-959
               
               
               Cow position:chr21:29658316-29658555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):14, 86

               
               
               Conread position:721-938
               
               
               Cow position:chr21:24875398-24875612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):47, 135

               
               
               Conread position:721-945
               
               
               Cow position:chr21:13225761-13225984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):170, 0

               
               
               Conread position:722-941
               
               
               Cow position:chr21:41040991-41041211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):138, 123

               
               
               Conread position:723-959
               
               
               Cow position:chr21:26018427-26018663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):215, 84

               
               
               Conread position:725-938
               
               
               Cow position:chr21:17515858-17516070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:725-941
               
               
               Cow position:chr21:17519071-17519291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:725-951
               
               
               Cow position:chr21:3415704-3415931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):109, 100

               
               
               Conread position:725-951
               
               
               Cow position:chr21:9504916-9505142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):129, 61

               
               
               Conread position:727-941
               
               
               Cow position:chr21:6153853-6154063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:727-949
               
               
               Cow position:chr21:17155900-17155677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):101, 94

               
               
               Conread position:728-959
               
               
               Cow position:chr21:15012492-15012714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):214, 122

               
               
               Conread position:729-941
               
               
               Cow position:chr21:3177895-3178108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):26, 127

               
               
               Conread position:729-941
               
               
               Cow position:chr21:40820799-40820588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:729-945
               
               
               Cow position:chr21:2537085-2536868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):211, 0

               
               
               Conread position:729-949
               
               
               Cow position:chr21:25012136-25012348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:729-957
               
               
               Cow position:chr21:11182607-11182829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):97, 102

               
               
               Conread position:729-959
               
               
               Cow position:chr21:13303846-13304076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):99, 93

               
               
               Conread position:732-941
               
               
               Cow position:chr21:13090431-13090640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:733-951
               
               
               Cow position:chr21:8506487-8506276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:733-951
               
               
               Cow position:chr21:8509375-8509164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:733-958
               
               
               Cow position:chr21:17531187-17531414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):108, 223

               
               
               Conread position:734-956
               
               
               Cow position:chr21:48482469-48482252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:736-941
               
               
               Cow position:chr21:12348826-12349031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:737-938
               
               
               Cow position:chr21:27409670-27409478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):37, 24

               
               
               Conread position:741-949
               
               
               Cow position:chr21:22211319-22211527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:743-958
               
               
               Cow position:chr21:12322565-12322778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:745-929
               
               
               Cow position:chr21:14745839-14746023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):71, 64

               
               
               Conread position:747-929
               
               
               Cow position:chr21:18783397-18783215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):75, 112

               
               
               Conread position:747-935
               
               
               Cow position:chr21:42017531-42017343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):126, 151

               
               
               Conread position:747-951
               
               
               Cow position:chr21:4108847-4109049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:747-958
               
               
               Cow position:chr21:5214420-5214632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:754-960
               
               
               Cow position:chr21:16796930-16797133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):94, 152

               
               
               Conread position:757-951
               
               
               Cow position:chr21:40457683-40457882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):97, 123

               
               
               Conread position:764-941
               
               
               Cow position:chr21:15271348-15271176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:773-941
               
               
               Cow position:chr21:3379654-3379490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):125, 77

               
               
               Conread position:773-941
               
               
               Cow position:chr21:27744123-27744292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):104, 73

               
               
               Conread position:773-941
               
               
               Cow position:chr21:41738006-41738171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:773-949
               
               
               Cow position:chr21:14247232-14247407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:773-950
               
               
               Cow position:chr21:30938568-30938394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):127, 99

               
               
               Conread position:773-951
               
               
               Cow position:chr21:6291844-6292020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):169, 0

               
               
               Conread position:773-951
               
               
               Cow position:chr21:27567992-27568163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:773-951
               
               
               Cow position:chr21:28882280-28882456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:773-955
               
               
               Cow position:chr21:45446633-45446815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):81, 9

               
               
               Conread position:774-935
               
               
               Cow position:chr21:32536495-32536648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:774-937
               
               
               Cow position:chr21:11353159-11353323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):149, 0

               
               
               Conread position:774-937
               
               
               Cow position:chr21:37495847-37495685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):16, 80

               
               
               Conread position:774-938
               
               
               Cow position:chr21:31462661-31462817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:774-941
               
               
               Cow position:chr21:29418667-29418836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):154, 0

               
               
               Conread position:774-943
               
               
               Cow position:chr21:7460706-7460870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):80, 96

               
               
               Conread position:774-945
               
               
               Cow position:chr21:40930376-40930210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:774-949
               
               
               Cow position:chr21:13134700-13134867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:774-949
               
               
               Cow position:chr21:38482478-38482653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):85, 98

               
               
               Conread position:774-951
               
               
               Cow position:chr21:18056030-18055855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):50, 86

               
               
               Conread position:774-959
               
               
               Cow position:chr21:29011871-29011695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:775-941
               
               
               Cow position:chr21:646217-646052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:775-941
               
               
               Cow position:chr21:8986121-8986289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:775-944
               
               
               Cow position:chr21:1464443-1464609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:775-944
               
               
               Cow position:chr21:31659051-31658888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:775-945
               
               
               Cow position:chr21:32648089-32647919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:775-949
               
               
               Cow position:chr21:26828874-26828700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:775-950
               
               
               Cow position:chr21:41482875-41482701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):56, 26

               
               
               Conread position:775-951
               
               
               Cow position:chr21:7201249-7201424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):66, 76

               
               
               Conread position:775-954
               
               
               Cow position:chr21:745275-745446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:775-957
               
               
               Cow position:chr21:11006671-11006488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):41, 71

               
               
               Conread position:775-958
               
               
               Cow position:chr21:45537284-45537471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:775-959
               
               
               Cow position:chr21:3135769-3135586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):163, 123

               
               
               Conread position:775-959
               
               
               Cow position:chr21:31278283-31278469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:776-960
               
               
               Cow position:chr21:45376049-45376232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):163, 76

               
               
               Conread position:777-945
               
               
               Cow position:chr21:15305197-15305028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:777-956
               
               
               Cow position:chr21:30970037-30970209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:778-949
               
               
               Cow position:chr21:5344981-5345152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:780-937
               
               
               Cow position:chr21:43655807-43655961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:780-944
               
               
               Cow position:chr21:48205116-48204952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:780-951
               
               
               Cow position:chr21:44732939-44732769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):158, 74

               
               
               Conread position:781-924
               
               
               Cow position:chr21:7424908-7424767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:781-944
               
               
               Cow position:chr21:18449858-18450021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:781-958
               
               
               Cow position:chr21:42189650-42189478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):162, 69

               
               
               Conread position:782-941
               
               
               Cow position:chr21:43316788-43316629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:782-958
               
               
               Cow position:chr21:39278190-39278011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:782-959
               
               
               Cow position:chr21:19220691-19220514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):59, 69

               
               
               Conread position:782-959
               
               
               Cow position:chr21:42047935-42047760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:783-935
               
               
               Cow position:chr21:31258574-31258727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):148, 0

               
               
               Conread position:787-937
               
               
               Cow position:chr21:16120049-16119903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:787-949
               
               
               Cow position:chr21:12473948-12473791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:790-948
               
               
               Cow position:chr21:19340117-19339960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:793-960
               
               
               Cow position:chr21:19236853-19236684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):150, 0

               
               
               Conread position:796-951
               
               
               Cow position:chr21:16099444-16099287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:796-959
               
               
               Cow position:chr21:42341817-42341658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):147, 61

               
               
               Conread position:798-945
               
               
               Cow position:chr21:58566-58714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):43, 50

               
               
               Conread position:800-950
               
               
               Cow position:chr21:31760100-31759954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:800-950
               
               
               Cow position:chr21:42227574-42227425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:802-941
               
               
               Cow position:chr21:32392940-32392800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):51, 132

               
               
               Conread position:802-949
               
               
               Cow position:chr21:34209889-34209743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:537-875
               
               
               Cow position:chr22:32895009-32895350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):18, 93

               
               
               Conread position:544-959
               
               
               Cow position:chr22:6097221-6096802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:280
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):48, 144

               
               
               Conread position:544-960
               
               
               Cow position:chr22:1848865-1849287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 251

               
               
               Conread position:547-958
               
               
               Cow position:chr22:24732741-24732349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:269
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):51, 7

               
               
               Conread position:547-960
               
               
               Cow position:chr22:36563217-36562811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:269
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):48, 7

               
               
               Conread position:552-949
               
               
               Cow position:chr22:8303044-8302639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:259
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):11, 172

               
               
               Conread position:552-951
               
               
               Cow position:chr22:32698571-32698970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 36

               
               
               Conread position:553-940
               
               
               Cow position:chr22:28640333-28639961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):8, 19

               
               
               Conread position:557-951
               
               
               Cow position:chr22:40386981-40387357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:268
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):265, 6

               
               
               Conread position:562-959
               
               
               Cow position:chr22:33448259-33447863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 7

               
               
               Conread position:564-877
               
               
               Cow position:chr22:15020576-15020281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):60, 21

               
               
               Conread position:564-949
               
               
               Cow position:chr22:8882841-8883214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:266
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):11, 24

               
               
               Conread position:565-799
               
               
               Cow position:chr22:24734487-24734259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):34, 60

               
               
               Conread position:566-720
               
               
               Cow position:chr22:3541896-3541742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):147, 132

               
               
               Conread position:566-759
               
               
               Cow position:chr22:14602571-14602374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):22, 96

               
               
               Conread position:566-775
               
               
               Cow position:chr22:11500602-11500812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):24, 135

               
               
               Conread position:566-809
               
               
               Cow position:chr22:17993207-17992964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):22, 59

               
               
               Conread position:566-875
               
               
               Cow position:chr22:44180417-44180725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 85

               
               
               Conread position:566-935
               
               
               Cow position:chr22:3533770-3534121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:250
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):30, 60

               
               
               Conread position:566-937
               
               
               Cow position:chr22:16620997-16621384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:269
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):53, 145

               
               
               Conread position:566-951
               
               
               Cow position:chr22:12681969-12681589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 19

               
               
               Conread position:566-951
               
               
               Cow position:chr22:18259052-18259423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:262
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):144, 19

               
               
               Conread position:566-955
               
               
               Cow position:chr22:34476180-34475777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:271
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):55, 19

               
               
               Conread position:566-959
               
               
               Cow position:chr22:31196673-31196280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:257
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):16, 20

               
               
               Conread position:566-959
               
               
               Cow position:chr22:36433146-36432756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 61

               
               
               Conread position:566-960
               
               
               Cow position:chr22:34894796-34895171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:267
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):27, 133

               
               
               Conread position:569-742
               
               
               Cow position:chr22:6360661-6360486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):30, 57

               
               
               Conread position:569-910
               
               
               Cow position:chr22:11038094-11038430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):34, 7

               
               
               Conread position:569-941
               
               
               Cow position:chr22:6494001-6494371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):287, 54

               
               
               Conread position:569-952
               
               
               Cow position:chr22:27635306-27635689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:248
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):192, 59

               
               
               Conread position:569-955
               
               
               Cow position:chr22:2642944-2643322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:257
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):116, 20

               
               
               Conread position:569-959
               
               
               Cow position:chr22:22612939-22613316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 105

               
               
               Conread position:572-941
               
               
               Cow position:chr22:4356929-4357279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:257
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):56, 11

               
               
               Conread position:572-941
               
               
               Cow position:chr22:16095066-16094710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 7

               
               
               Conread position:572-949
               
               
               Cow position:chr22:39472544-39472157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 55

               
               
               Conread position:573-954
               
               
               Cow position:chr22:39508207-39507829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:252
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):168, 19

               
               
               Conread position:574-917
               
               
               Cow position:chr22:29290297-29289977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:229
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):142, 11

               
               
               Conread position:574-950
               
               
               Cow position:chr22:40048391-40048762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 23

               
               
               Conread position:574-959
               
               
               Cow position:chr22:14143283-14142911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:273
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):47, 22

               
               
               Conread position:575-876
               
               
               Cow position:chr22:34606418-34606725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):17, 97

               
               
               Conread position:576-842
               
               
               Cow position:chr22:21355301-21355041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):37, 13

               
               
               Conread position:576-855
               
               
               Cow position:chr22:2523802-2524076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):16, 32

               
               
               Conread position:576-941
               
               
               Cow position:chr22:25916882-25917240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):154, 11

               
               
               Conread position:576-944
               
               
               Cow position:chr22:59450-59812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:255
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):30, 13

               
               
               Conread position:576-947
               
               
               Cow position:chr22:9977657-9977998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:257
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):147, 42

               
               
               Conread position:576-950
               
               
               Cow position:chr22:12315647-12316013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:258
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):18, 131

               
               
               Conread position:576-955
               
               
               Cow position:chr22:11686100-11685726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):134, 15

               
               
               Conread position:577-848
               
               
               Cow position:chr22:18126898-18126629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):22, 8

               
               
               Conread position:577-860
               
               
               Cow position:chr22:1279551-1279267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:206
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):15, 131

               
               
               Conread position:577-921
               
               
               Cow position:chr22:30515089-30515446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):15, 48

               
               
               Conread position:577-929
               
               
               Cow position:chr22:14378842-14378508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 47

               
               
               Conread position:577-941
               
               
               Cow position:chr22:4563199-4563552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:253
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):15, 28

               
               
               Conread position:577-947
               
               
               Cow position:chr22:12800500-12800876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 274

               
               
               Conread position:577-948
               
               
               Cow position:chr22:15950542-15950187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:252
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):15, 47

               
               
               Conread position:577-956
               
               
               Cow position:chr22:1975449-1975831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:266
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):10, 49

               
               
               Conread position:577-957
               
               
               Cow position:chr22:46610940-46610566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):93, 11

               
               
               Conread position:577-958
               
               
               Cow position:chr22:18196348-18196723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:256
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):17, 21

               
               
               Conread position:577-959
               
               
               Cow position:chr22:6754417-6754048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 113

               
               
               Conread position:578-700
               
               
               Cow position:chr22:12946331-12946206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:578-935
               
               
               Cow position:chr22:10981225-10981575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:578-941
               
               
               Cow position:chr22:37030681-37030328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):30, 18

               
               
               Conread position:578-959
               
               
               Cow position:chr22:36132637-36133016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:255
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):365, 92

               
               
               Conread position:579-855
               
               
               Cow position:chr22:27581278-27581552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):47, 17

               
               
               Conread position:579-875
               
               
               Cow position:chr22:2502674-2502959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):13, 91

               
               
               Conread position:579-875
               
               
               Cow position:chr22:22223031-22223322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):50, 65

               
               
               Conread position:579-945
               
               
               Cow position:chr22:3301486-3301135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 47

               
               
               Conread position:580-874
               
               
               Cow position:chr22:2627408-2627711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):46, 133

               
               
               Conread position:580-941
               
               
               Cow position:chr22:15153837-15154198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:246
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):11, 127

               
               
               Conread position:580-948
               
               
               Cow position:chr22:23833129-23833490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:257
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):40, 5

               
               
               Conread position:580-955
               
               
               Cow position:chr22:10294884-10295238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 43

               
               
               Conread position:581-736
               
               
               Cow position:chr22:18219048-18218895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):45, 127

               
               
               Conread position:581-803
               
               
               Cow position:chr22:26097780-26097559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):16, 39

               
               
               Conread position:581-880
               
               
               Cow position:chr22:24628809-24628519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):11, 115

               
               
               Conread position:581-929
               
               
               Cow position:chr22:17126291-17126631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):15, 128

               
               
               Conread position:581-940
               
               
               Cow position:chr22:4372886-4373229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:252
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:581-940
               
               
               Cow position:chr22:27274849-27274494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:256
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):11, 37

               
               
               Conread position:581-941
               
               
               Cow position:chr22:644920-644585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):152, 26

               
               
               Conread position:581-941
               
               
               Cow position:chr22:1654357-1653990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:242
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):15, 113

               
               
               Conread position:581-941
               
               
               Cow position:chr22:4061105-4060752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:243
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):5, 43

               
               
               Conread position:581-941
               
               
               Cow position:chr22:13957804-13957449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:581-944
               
               
               Cow position:chr22:28356880-28357226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:254
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:581-949
               
               
               Cow position:chr22:36539828-36539455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 27

               
               
               Conread position:581-956
               
               
               Cow position:chr22:17852784-17852426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:261
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):12, 43

               
               
               Conread position:581-959
               
               
               Cow position:chr22:18025717-18025340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:249
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):23, 105

               
               
               Conread position:581-959
               
               
               Cow position:chr22:22861067-22860697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 43

               
               
               Conread position:582-820
               
               
               Cow position:chr22:27835372-27835611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):12, 104

               
               
               Conread position:582-949
               
               
               Cow position:chr22:29641956-29642316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 85

               
               
               Conread position:583-761
               
               
               Cow position:chr22:22146074-22146252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):9, 124

               
               
               Conread position:583-872
               
               
               Cow position:chr22:19173543-19173832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):218, 41

               
               
               Conread position:584-831
               
               
               Cow position:chr22:22160569-22160815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):138, 39

               
               
               Conread position:584-937
               
               
               Cow position:chr22:6327921-6327582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:235
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):118, 23

               
               
               Conread position:585-706
               
               
               Cow position:chr22:26969628-26969750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):41, 99

               
               
               Conread position:585-799
               
               
               Cow position:chr22:3993458-3993667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:585-842
               
               
               Cow position:chr22:4645619-4645871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:585-843
               
               
               Cow position:chr22:9283752-9283497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:585-848
               
               
               Cow position:chr22:877361-877621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):137, 22

               
               
               Conread position:585-848
               
               
               Cow position:chr22:12968225-12967963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):41, 141

               
               
               Conread position:585-860
               
               
               Cow position:chr22:26658901-26659159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:585-875
               
               
               Cow position:chr22:8116241-8115955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:203
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:585-875
               
               
               Cow position:chr22:16044575-16044283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 132

               
               
               Conread position:585-875
               
               
               Cow position:chr22:23854819-23855104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):14, 42

               
               
               Conread position:585-927
               
               
               Cow position:chr22:28146530-28146864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:244
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):41, 60

               
               
               Conread position:585-935
               
               
               Cow position:chr22:42635585-42635242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):137, 38

               
               
               Conread position:585-941
               
               
               Cow position:chr22:12313269-12313615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 87

               
               
               Conread position:585-948
               
               
               Cow position:chr22:4990322-4989965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:245
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):67, 39

               
               
               Conread position:585-949
               
               
               Cow position:chr22:23759163-23758805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):137, 21

               
               
               Conread position:585-949
               
               
               Cow position:chr22:23830779-23831134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:230
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):139, 9

               
               
               Conread position:585-951
               
               
               Cow position:chr22:19341049-19341401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:258
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):44, 108

               
               
               Conread position:585-951
               
               
               Cow position:chr22:22022736-22023111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:254
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):38, 89

               
               
               Conread position:585-958
               
               
               Cow position:chr22:15568168-15567810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 38

               
               
               Conread position:585-959
               
               
               Cow position:chr22:25206120-25205750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:258
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):263, 81

               
               
               Conread position:585-959
               
               
               Cow position:chr22:40374452-40374820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 127

               
               
               Conread position:585-959
               
               
               Cow position:chr22:46665652-46665283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):156, 98

               
               
               Conread position:586-752
               
               
               Cow position:chr22:18654196-18654033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):136, 10

               
               
               Conread position:586-938
               
               
               Cow position:chr22:41898599-41898256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):205, 36

               
               
               Conread position:588-941
               
               
               Cow position:chr22:27322165-27322494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:237
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):38, 111

               
               
               Conread position:589-817
               
               
               Cow position:chr22:7838444-7838665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):133, 36

               
               
               Conread position:589-838
               
               
               Cow position:chr22:19047968-19047720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):132, 36

               
               
               Conread position:589-875
               
               
               Cow position:chr22:27329045-27328760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):15, 87

               
               
               Conread position:590-936
               
               
               Cow position:chr22:530727-530387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:245
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):13, 35

               
               
               Conread position:591-699
               
               
               Cow position:chr22:3945026-3945135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:91
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:591-741
               
               
               Cow position:chr22:1822022-1821872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):138, 123

               
               
               Conread position:591-752
               
               
               Cow position:chr22:10292814-10292978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):34, 128

               
               
               Conread position:591-753
               
               
               Cow position:chr22:12598939-12599098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):67, 38

               
               
               Conread position:591-753
               
               
               Cow position:chr22:28731527-28731688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):110, 27

               
               
               Conread position:591-766
               
               
               Cow position:chr22:6123048-6122880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:591-767
               
               
               Cow position:chr22:41271147-41270976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-783
               
               
               Cow position:chr22:25629911-25629723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:591-796
               
               
               Cow position:chr22:10678132-10677937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):134, 34

               
               
               Conread position:591-815
               
               
               Cow position:chr22:23865317-23865539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):26, 114

               
               
               Conread position:591-817
               
               
               Cow position:chr22:43292045-43291827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):131, 113

               
               
               Conread position:591-840
               
               
               Cow position:chr22:14638629-14638379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):139, 21

               
               
               Conread position:591-840
               
               
               Cow position:chr22:14844426-14844659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):34, 56

               
               
               Conread position:591-841
               
               
               Cow position:chr22:845754-846002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):118, 28

               
               
               Conread position:591-842
               
               
               Cow position:chr22:10632771-10633014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-842
               
               
               Cow position:chr22:15090592-15090842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):103, 115

               
               
               Conread position:591-843
               
               
               Cow position:chr22:5337744-5337498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):130, 12

               
               
               Conread position:591-845
               
               
               Cow position:chr22:34398606-34398351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):131, 115

               
               
               Conread position:591-846
               
               
               Cow position:chr22:1590875-1591128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):83, 32

               
               
               Conread position:591-848
               
               
               Cow position:chr22:23403795-23403536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):131, 55

               
               
               Conread position:591-848
               
               
               Cow position:chr22:27740744-27740996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):35, 117

               
               
               Conread position:591-852
               
               
               Cow position:chr22:7851815-7852074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):31, 95

               
               
               Conread position:591-853
               
               
               Cow position:chr22:23856901-23857157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:189
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:591-854
               
               
               Cow position:chr22:45845998-45846253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):132, 33

               
               
               Conread position:591-855
               
               
               Cow position:chr22:1266078-1265811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:591-855
               
               
               Cow position:chr22:8840439-8840718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:591-856
               
               
               Cow position:chr22:23122170-23121888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):30, 136

               
               
               Conread position:591-859
               
               
               Cow position:chr22:26184310-26184044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):130, 33

               
               
               Conread position:591-860
               
               
               Cow position:chr22:14924880-14924614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):131, 34

               
               
               Conread position:591-860
               
               
               Cow position:chr22:17814076-17814350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):35, 137

               
               
               Conread position:591-860
               
               
               Cow position:chr22:21502595-21502862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-860
               
               
               Cow position:chr22:30049717-30049448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):82, 32

               
               
               Conread position:591-866
               
               
               Cow position:chr22:26316321-26316578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):35, 114

               
               
               Conread position:591-867
               
               
               Cow position:chr22:2912730-2912465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):131, 79

               
               
               Conread position:591-867
               
               
               Cow position:chr22:22908043-22908311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):32, 113

               
               
               Conread position:591-871
               
               
               Cow position:chr22:26141128-26141402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-875
               
               
               Cow position:chr22:3950102-3950385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:198
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):35, 116

               
               
               Conread position:591-875
               
               
               Cow position:chr22:4017329-4017608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:205
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):265, 32

               
               
               Conread position:591-875
               
               
               Cow position:chr22:13840986-13841271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):15, 66

               
               
               Conread position:591-875
               
               
               Cow position:chr22:23176589-23176307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):28, 86

               
               
               Conread position:591-875
               
               
               Cow position:chr22:43119876-43119596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-882
               
               
               Cow position:chr22:37324398-37324683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):131, 26

               
               
               Conread position:591-918
               
               
               Cow position:chr22:38930658-38930331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:226
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):35, 109

               
               
               Conread position:591-919
               
               
               Cow position:chr22:15025258-15024935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 34

               
               
               Conread position:591-922
               
               
               Cow position:chr22:14366098-14365775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):260, 32

               
               
               Conread position:591-927
               
               
               Cow position:chr22:28058197-28057860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:239
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):146, 12

               
               
               Conread position:591-927
               
               
               Cow position:chr22:29013729-29014066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:225
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):29, 120

               
               
               Conread position:591-927
               
               
               Cow position:chr22:30483769-30484086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-927
               
               
               Cow position:chr22:31646345-31646665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):117, 32

               
               
               Conread position:591-929
               
               
               Cow position:chr22:10631228-10631572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):44, 32

               
               
               Conread position:591-930
               
               
               Cow position:chr22:2403728-2404065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):112, 32

               
               
               Conread position:591-934
               
               
               Cow position:chr22:30094097-30094432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:226
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):107, 32

               
               
               Conread position:591-935
               
               
               Cow position:chr22:10532354-10532683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:244
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):32, 106

               
               
               Conread position:591-935
               
               
               Cow position:chr22:12388943-12389292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 11

               
               
               Conread position:591-935
               
               
               Cow position:chr22:45807692-45808019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-936
               
               
               Cow position:chr22:14245582-14245247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):122, 35

               
               
               Conread position:591-937
               
               
               Cow position:chr22:30269265-30269593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):143, 32

               
               
               Conread position:591-937
               
               
               Cow position:chr22:31510516-31510171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):205, 32

               
               
               Conread position:591-938
               
               
               Cow position:chr22:5467522-5467172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:259
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):30, 263

               
               
               Conread position:591-938
               
               
               Cow position:chr22:13866497-13866861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:253
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):31, 129

               
               
               Conread position:591-939
               
               
               Cow position:chr22:9127258-9127592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:236
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):106, 33

               
               
               Conread position:591-939
               
               
               Cow position:chr22:10161817-10162161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:243
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):139, 32

               
               
               Conread position:591-939
               
               
               Cow position:chr22:34441779-34441439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 21

               
               
               Conread position:591-940
               
               
               Cow position:chr22:534349-534684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:245
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):35, 119

               
               
               Conread position:591-940
               
               
               Cow position:chr22:26166768-26166423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-940
               
               
               Cow position:chr22:44717565-44717915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 16

               
               
               Conread position:591-941
               
               
               Cow position:chr22:1563398-1563044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:251
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):130, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr22:3987368-3987718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:237
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):132, 115

               
               
               Conread position:591-941
               
               
               Cow position:chr22:7153733-7154071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:245
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):25, 119

               
               
               Conread position:591-941
               
               
               Cow position:chr22:8324101-8324444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:237
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):231, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr22:11370735-11370396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr22:11613276-11613622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):334, 104

               
               
               Conread position:591-941
               
               
               Cow position:chr22:13702109-13701764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):132, 118

               
               
               Conread position:591-941
               
               
               Cow position:chr22:15668622-15668286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:247
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):67, 165

               
               
               Conread position:591-941
               
               
               Cow position:chr22:16822955-16823313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:249
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):131, 33

               
               
               Conread position:591-941
               
               
               Cow position:chr22:26339608-26339960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:245
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):139, 37

               
               
               Conread position:591-941
               
               
               Cow position:chr22:26786209-26786554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:243
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):116, 7

               
               
               Conread position:591-941
               
               
               Cow position:chr22:27550207-27550557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):131, 111

               
               
               Conread position:591-941
               
               
               Cow position:chr22:30998749-30999086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):133, 34

               
               
               Conread position:591-941
               
               
               Cow position:chr22:40349202-40349537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-941
               
               
               Cow position:chr22:41495828-41496175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:230
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):32, 113

               
               
               Conread position:591-941
               
               
               Cow position:chr22:41982863-41982527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:244
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):133, 32

               
               
               Conread position:591-942
               
               
               Cow position:chr22:15050017-15050374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):59, 129

               
               
               Conread position:591-942
               
               
               Cow position:chr22:21746489-21746835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:248
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):30, 136

               
               
               Conread position:591-944
               
               
               Cow position:chr22:3566028-3566366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):150, 33

               
               
               Conread position:591-944
               
               
               Cow position:chr22:32326655-32326998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:241
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):263, 37

               
               
               Conread position:591-945
               
               
               Cow position:chr22:6092795-6092463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):141, 16

               
               
               Conread position:591-945
               
               
               Cow position:chr22:6215705-6215357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:246
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):108, 32

               
               
               Conread position:591-945
               
               
               Cow position:chr22:36560805-36560450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):286, 93

               
               
               Conread position:591-948
               
               
               Cow position:chr22:1484714-1485070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:244
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):37, 56

               
               
               Conread position:591-949
               
               
               Cow position:chr22:4076043-4075682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 119

               
               
               Conread position:591-949
               
               
               Cow position:chr22:5016364-5016696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:243
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):354, 79

               
               
               Conread position:591-949
               
               
               Cow position:chr22:9372364-9372730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 58

               
               
               Conread position:591-949
               
               
               Cow position:chr22:11697353-11696991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:258
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):28, 131

               
               
               Conread position:591-949
               
               
               Cow position:chr22:18926207-18926560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 33

               
               
               Conread position:591-949
               
               
               Cow position:chr22:25743099-25742761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):44, 32

               
               
               Conread position:591-949
               
               
               Cow position:chr22:26041451-26041809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):28, 54

               
               
               Conread position:591-949
               
               
               Cow position:chr22:26134379-26134017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:246
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):30, 108

               
               
               Conread position:591-949
               
               
               Cow position:chr22:34750530-34750892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:251
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):132, 33

               
               
               Conread position:591-949
               
               
               Cow position:chr22:38313613-38313270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:244
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):35, 57

               
               
               Conread position:591-949
               
               
               Cow position:chr22:38940097-38939748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:260
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):131, 104

               
               
               Conread position:591-949
               
               
               Cow position:chr22:43131699-43131350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 32

               
               
               Conread position:591-950
               
               
               Cow position:chr22:6610497-6610153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:247
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):31, 47

               
               
               Conread position:591-950
               
               
               Cow position:chr22:33485750-33485420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:238
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):54, 32

               
               
               Conread position:591-950
               
               
               Cow position:chr22:40071833-40072165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:253
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):109, 33

               
               
               Conread position:591-951
               
               
               Cow position:chr22:1289663-1289324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:248
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):172, 32

               
               
               Conread position:591-951
               
               
               Cow position:chr22:2470391-2470032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:248
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):35, 54

               
               
               Conread position:591-951
               
               
               Cow position:chr22:4162732-4162377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):173, 51

               
               
               Conread position:591-951
               
               
               Cow position:chr22:10685236-10684892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:238
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):316, 32

               
               
               Conread position:591-951
               
               
               Cow position:chr22:11130722-11131075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 33

               
               
               Conread position:591-951
               
               
               Cow position:chr22:12573060-12573411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):127, 27

               
               
               Conread position:591-951
               
               
               Cow position:chr22:16532932-16533279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:254
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):141, 17

               
               
               Conread position:591-951
               
               
               Cow position:chr22:20626693-20627037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 32

               
               
               Conread position:591-951
               
               
               Cow position:chr22:30818063-30818415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 32

               
               
               Conread position:591-951
               
               
               Cow position:chr22:33399629-33399281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:252
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):167, 33

               
               
               Conread position:591-951
               
               
               Cow position:chr22:40121026-40120665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:255
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):30, 71

               
               
               Conread position:591-951
               
               
               Cow position:chr22:41853748-41854108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):36, 102

               
               
               Conread position:591-954
               
               
               Cow position:chr22:17152533-17152897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-954
               
               
               Cow position:chr22:43397865-43398208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-955
               
               
               Cow position:chr22:7967553-7967905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:258
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):18, 27

               
               
               Conread position:591-957
               
               
               Cow position:chr22:18838101-18838463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:244
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):32, 39

               
               
               Conread position:591-957
               
               
               Cow position:chr22:25222047-25221689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 32

               
               
               Conread position:591-957
               
               
               Cow position:chr22:37201705-37202061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):166, 111

               
               
               Conread position:591-958
               
               
               Cow position:chr22:2095404-2095769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):69, 119

               
               
               Conread position:591-958
               
               
               Cow position:chr22:3315963-3316307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):134, 32

               
               
               Conread position:591-959
               
               
               Cow position:chr22:6622393-6622039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:253
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:591-959
               
               
               Cow position:chr22:10416067-10416441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:257
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):85, 32

               
               
               Conread position:591-959
               
               
               Cow position:chr22:32651350-32651727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:260
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):30, 116

               
               
               Conread position:591-959
               
               
               Cow position:chr22:32892551-32892912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):221, 32

               
               
               Conread position:591-960
               
               
               Cow position:chr22:864666-864317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:249
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):44, 32

               
               
               Conread position:591-960
               
               
               Cow position:chr22:7081881-7082242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:239
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):323, 72

               
               
               Conread position:591-960
               
               
               Cow position:chr22:10302866-10303230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 119

               
               
               Conread position:591-960
               
               
               Cow position:chr22:34608854-34609213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:254
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):31, 5

               
               
               Conread position:592-719
               
               
               Cow position:chr22:1081358-1081482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:592-735
               
               
               Cow position:chr22:4974571-4974430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:592-838
               
               
               Cow position:chr22:20475422-20475186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):107, 77

               
               
               Conread position:592-839
               
               
               Cow position:chr22:19775578-19775336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):110, 31

               
               
               Conread position:592-855
               
               
               Cow position:chr22:25943329-25943587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:193
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):130, 92

               
               
               Conread position:592-855
               
               
               Cow position:chr22:30111347-30111611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):108, 149

               
               
               Conread position:592-875
               
               
               Cow position:chr22:10420884-10421166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):130, 31

               
               
               Conread position:592-884
               
               
               Cow position:chr22:30113926-30114213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):112, 35

               
               
               Conread position:592-905
               
               
               Cow position:chr22:1068060-1067753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:592-923
               
               
               Cow position:chr22:15068278-15068607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:228
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):34, 79

               
               
               Conread position:592-928
               
               
               Cow position:chr22:10314928-10315279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:251
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):126, 31

               
               
               Conread position:592-936
               
               
               Cow position:chr22:16053162-16053504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:235
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):27, 105

               
               
               Conread position:592-937
               
               
               Cow position:chr22:12803532-12803196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:235
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):130, 31

               
               
               Conread position:592-938
               
               
               Cow position:chr22:9668418-9668772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 237

               
               
               Conread position:592-941
               
               
               Cow position:chr22:3325438-3325783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:240
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):130, 14

               
               
               Conread position:592-941
               
               
               Cow position:chr22:8090675-8090339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:243
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):130, 32

               
               
               Conread position:592-941
               
               
               Cow position:chr22:8429737-8430086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:237
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):34, 100

               
               
               Conread position:592-941
               
               
               Cow position:chr22:11813868-11813528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):36, 74

               
               
               Conread position:592-941
               
               
               Cow position:chr22:27171402-27171073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:238
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):205, 31

               
               
               Conread position:592-941
               
               
               Cow position:chr22:38439301-38438962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 31

               
               
               Conread position:592-944
               
               
               Cow position:chr22:21567848-21568190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 114

               
               
               Conread position:592-945
               
               
               Cow position:chr22:1035965-1035621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:228
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):91, 119

               
               
               Conread position:592-945
               
               
               Cow position:chr22:6709922-6709590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):279, 31

               
               
               Conread position:592-948
               
               
               Cow position:chr22:23689352-23689002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 119

               
               
               Conread position:592-949
               
               
               Cow position:chr22:2010651-2010996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):34, 105

               
               
               Conread position:592-949
               
               
               Cow position:chr22:4108886-4108524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):34, 83

               
               
               Conread position:592-949
               
               
               Cow position:chr22:15959918-15959570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):34, 122

               
               
               Conread position:592-949
               
               
               Cow position:chr22:27825689-27826051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:249
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):34, 106

               
               
               Conread position:592-950
               
               
               Cow position:chr22:2623666-2623300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:259
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):237, 31

               
               
               Conread position:592-956
               
               
               Cow position:chr22:10567847-10567508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:243
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:592-958
               
               
               Cow position:chr22:11600891-11601248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 81

               
               
               Conread position:592-959
               
               
               Cow position:chr22:1309875-1309524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 32

               
               
               Conread position:592-959
               
               
               Cow position:chr22:4157222-4156867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:254
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):138, 51

               
               
               Conread position:592-959
               
               
               Cow position:chr22:11146759-11147123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):118, 216

               
               
               Conread position:593-752
               
               
               Cow position:chr22:41245099-41245258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):128, 31

               
               
               Conread position:593-846
               
               
               Cow position:chr22:28665139-28665387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:183
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:593-855
               
               
               Cow position:chr22:590193-590451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:191
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):130, 30

               
               
               Conread position:593-875
               
               
               Cow position:chr22:3965038-3965319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):26, 36

               
               
               Conread position:593-904
               
               
               Cow position:chr22:5384505-5384818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):117, 36

               
               
               Conread position:593-935
               
               
               Cow position:chr22:16251711-16251375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:242
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):129, 32

               
               
               Conread position:593-937
               
               
               Cow position:chr22:4535470-4535130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:247
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):53, 58

               
               
               Conread position:593-938
               
               
               Cow position:chr22:23806688-23806345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):130, 33

               
               
               Conread position:593-941
               
               
               Cow position:chr22:13286304-13286644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):108, 156

               
               
               Conread position:593-941
               
               
               Cow position:chr22:17132556-17132211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:231
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):33, 52

               
               
               Conread position:593-941
               
               
               Cow position:chr22:30699033-30699361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):131, 30

               
               
               Conread position:593-944
               
               
               Cow position:chr22:5290700-5291054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 119

               
               
               Conread position:593-947
               
               
               Cow position:chr22:38977701-38978044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:593-950
               
               
               Cow position:chr22:8733477-8733141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 31

               
               
               Conread position:593-951
               
               
               Cow position:chr22:14178972-14178628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:247
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):59, 30

               
               
               Conread position:593-952
               
               
               Cow position:chr22:14372039-14372372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):129, 91

               
               
               Conread position:593-955
               
               
               Cow position:chr22:32661359-32661725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 104

               
               
               Conread position:593-957
               
               
               Cow position:chr22:14691118-14690747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 95

               
               
               Conread position:593-958
               
               
               Cow position:chr22:37029745-37029391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):137, 31

               
               
               Conread position:593-959
               
               
               Cow position:chr22:4583411-4583776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 32

               
               
               Conread position:593-959
               
               
               Cow position:chr22:27818853-27819212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:262
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):33, 167

               
               
               Conread position:593-960
               
               
               Cow position:chr22:25246763-25247125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:252
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):36, 68

               
               
               Conread position:594-899
               
               
               Cow position:chr22:17224809-17224515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):80, 29

               
               
               Conread position:594-930
               
               
               Cow position:chr22:40789424-40789742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:237
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):128, 29

               
               
               Conread position:594-948
               
               
               Cow position:chr22:34726527-34726878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):35, 49

               
               
               Conread position:594-957
               
               
               Cow position:chr22:6149527-6149175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:251
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):170, 70

               
               
               Conread position:595-855
               
               
               Cow position:chr22:34712573-34712838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):29, 127

               
               
               Conread position:595-929
               
               
               Cow position:chr22:7882410-7882734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:231
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):135, 28

               
               
               Conread position:595-930
               
               
               Cow position:chr22:13670318-13669982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:237
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):32, 104

               
               
               Conread position:595-938
               
               
               Cow position:chr22:32480623-32480274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 29

               
               
               Conread position:595-941
               
               
               Cow position:chr22:34616159-34616511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:229
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):107, 28

               
               
               Conread position:595-944
               
               
               Cow position:chr22:16292061-16291734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:595-949
               
               
               Cow position:chr22:15490515-15490859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:247
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):163, 17

               
               
               Conread position:596-816
               
               
               Cow position:chr22:31593002-31592782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):119, 148

               
               
               Conread position:596-878
               
               
               Cow position:chr22:13769331-13769612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):170, 28

               
               
               Conread position:596-937
               
               
               Cow position:chr22:25361344-25361669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:229
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):127, 27

               
               
               Conread position:596-941
               
               
               Cow position:chr22:27729908-27730236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):127, 27

               
               
               Conread position:596-951
               
               
               Cow position:chr22:8412385-8412737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):128, 30

               
               
               Conread position:596-951
               
               
               Cow position:chr22:41971300-41970948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):103, 27

               
               
               Conread position:596-958
               
               
               Cow position:chr22:25237293-25236911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:263
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):30, 247

               
               
               Conread position:596-958
               
               
               Cow position:chr22:37139296-37139641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):29, 11

               
               
               Conread position:596-959
               
               
               Cow position:chr22:6721216-6720866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:251
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):125, 27

               
               
               Conread position:596-960
               
               
               Cow position:chr22:11767193-11766835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 80

               
               
               Conread position:597-816
               
               
               Cow position:chr22:3241841-3241629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):129, 111

               
               
               Conread position:597-842
               
               
               Cow position:chr22:17125439-17125682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):22, 75

               
               
               Conread position:597-870
               
               
               Cow position:chr22:21295866-21295597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):126, 21

               
               
               Conread position:597-874
               
               
               Cow position:chr22:17764238-17764512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):124, 26

               
               
               Conread position:597-928
               
               
               Cow position:chr22:17259299-17258979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):29, 10

               
               
               Conread position:597-941
               
               
               Cow position:chr22:3251135-3250784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):251, 26

               
               
               Conread position:597-941
               
               
               Cow position:chr22:5616162-5616491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):26, 112

               
               
               Conread position:597-941
               
               
               Cow position:chr22:34735726-34736044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:232
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):107, 26

               
               
               Conread position:597-955
               
               
               Cow position:chr22:8138400-8138045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):126, 27

               
               
               Conread position:597-958
               
               
               Cow position:chr22:28071416-28071772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:248
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):124, 15

               
               
               Conread position:597-960
               
               
               Cow position:chr22:47741275-47741636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):29, 115

               
               
               Conread position:598-875
               
               
               Cow position:chr22:31153815-31154086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:188
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):172, 25

               
               
               Conread position:598-909
               
               
               Cow position:chr22:4119706-4119399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):84, 26

               
               
               Conread position:598-929
               
               
               Cow position:chr22:21325875-21325552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):22, 106

               
               
               Conread position:598-941
               
               
               Cow position:chr22:10983207-10983560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:238
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):115, 27

               
               
               Conread position:598-950
               
               
               Cow position:chr22:16273493-16273845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:245
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):28, 120

               
               
               Conread position:598-950
               
               
               Cow position:chr22:23805123-23804781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):100, 29

               
               
               Conread position:600-842
               
               
               Cow position:chr22:12341054-12341296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):23, 99

               
               
               Conread position:600-933
               
               
               Cow position:chr22:27066253-27066571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):259, 26

               
               
               Conread position:602-879
               
               
               Cow position:chr22:17295067-17294802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:602-941
               
               
               Cow position:chr22:17193250-17193590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:234
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):21, 115

               
               
               Conread position:602-959
               
               
               Cow position:chr22:27681578-27681939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 104

               
               
               Conread position:603-941
               
               
               Cow position:chr22:17950099-17949781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:233
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):127, 9

               
               
               Conread position:603-941
               
               
               Cow position:chr22:34618661-34619005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):99, 38

               
               
               Conread position:603-951
               
               
               Cow position:chr22:44410590-44410923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):203, 20

               
               
               Conread position:604-868
               
               
               Cow position:chr22:44574986-44574721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):151, 102

               
               
               Conread position:604-941
               
               
               Cow position:chr22:6419466-6419800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):236, 118

               
               
               Conread position:604-945
               
               
               Cow position:chr22:8418331-8418664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):99, 118

               
               
               Conread position:604-951
               
               
               Cow position:chr22:4560950-4560603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):121, 69

               
               
               Conread position:607-937
               
               
               Cow position:chr22:19827997-19827669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):45, 16

               
               
               Conread position:607-950
               
               
               Cow position:chr22:39602147-39602490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:235
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):24, 45

               
               
               Conread position:607-959
               
               
               Cow position:chr22:2123162-2123504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:241
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:608-766
               
               
               Cow position:chr22:21264157-21264318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):18, 100

               
               
               Conread position:608-935
               
               
               Cow position:chr22:10609222-10609548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 219

               
               
               Conread position:609-954
               
               
               Cow position:chr22:23980343-23979998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 110

               
               
               Conread position:612-940
               
               
               Cow position:chr22:12929402-12929083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:227
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):112, 84

               
               
               Conread position:612-951
               
               
               Cow position:chr22:19460166-19459838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):11, 59

               
               
               Conread position:613-929
               
               
               Cow position:chr22:9597706-9597401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:215
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):109, 25

               
               
               Conread position:613-949
               
               
               Cow position:chr22:1326292-1326622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:240
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):91, 57

               
               
               Conread position:614-903
               
               
               Cow position:chr22:4541816-4542090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):15, 10

               
               
               Conread position:614-941
               
               
               Cow position:chr22:44740967-44741266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:615-816
               
               
               Cow position:chr22:13849570-13849379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):86, 55

               
               
               Conread position:615-937
               
               
               Cow position:chr22:43237532-43237209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):107, 93

               
               
               Conread position:615-949
               
               
               Cow position:chr22:45132775-45132447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):79, 10

               
               
               Conread position:615-954
               
               
               Cow position:chr22:27828259-27828586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):115, 83

               
               
               Conread position:617-951
               
               
               Cow position:chr22:13221988-13222332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:617-951
               
               
               Cow position:chr22:46626503-46626170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):83, 54

               
               
               Conread position:618-792
               
               
               Cow position:chr22:45578842-45579017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):98, 87

               
               
               Conread position:618-831
               
               
               Cow position:chr22:4011062-4011273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):144, 76

               
               
               Conread position:618-930
               
               
               Cow position:chr22:27619607-27619922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):69, 90

               
               
               Conread position:618-941
               
               
               Cow position:chr22:5837146-5837457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):56, 50

               
               
               Conread position:618-943
               
               
               Cow position:chr22:31870374-31870057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:232
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):9, 58

               
               
               Conread position:618-949
               
               
               Cow position:chr22:14091343-14091017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):100, 70

               
               
               Conread position:618-959
               
               
               Cow position:chr22:22013629-22013962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:235
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):112, 44

               
               
               Conread position:619-841
               
               
               Cow position:chr22:12527246-12527024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):62, 153

               
               
               Conread position:619-951
               
               
               Cow position:chr22:31599329-31599640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):86, 24

               
               
               Conread position:619-958
               
               
               Cow position:chr22:47555729-47556074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):10, 91

               
               
               Conread position:620-862
               
               
               Cow position:chr22:1911550-1911784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:620-867
               
               
               Cow position:chr22:6936145-6936381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:620-937
               
               
               Cow position:chr22:19890840-19891151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):188, 75

               
               
               Conread position:621-840
               
               
               Cow position:chr22:46568007-46567796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:622-949
               
               
               Cow position:chr22:15915160-15914842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):96, 80

               
               
               Conread position:624-937
               
               
               Cow position:chr22:12892482-12892169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:223
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):80, 32

               
               
               Conread position:624-945
               
               
               Cow position:chr22:12829727-12829409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 82

               
               
               Conread position:624-959
               
               
               Cow position:chr22:27577632-27577958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:233
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):106, 22

               
               
               Conread position:625-941
               
               
               Cow position:chr22:6852698-6852385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 100

               
               
               Conread position:625-941
               
               
               Cow position:chr22:23736126-23735816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 36

               
               
               Conread position:626-948
               
               
               Cow position:chr22:41342059-41341744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):203, 22

               
               
               Conread position:626-949
               
               
               Cow position:chr22:1105949-1106274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):20, 37

               
               
               Conread position:628-945
               
               
               Cow position:chr22:23181152-23180846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):94, 67

               
               
               Conread position:629-941
               
               
               Cow position:chr22:30697049-30697344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:629-960
               
               
               Cow position:chr22:37947612-37947936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:217
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):93, 81

               
               
               Conread position:631-958
               
               
               Cow position:chr22:39215725-39215399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 66

               
               
               Conread position:632-947
               
               
               Cow position:chr22:3842510-3842820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):63, 78

               
               
               Conread position:632-952
               
               
               Cow position:chr22:285467-285159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):92, 51

               
               
               Conread position:633-958
               
               
               Cow position:chr22:4132464-4132790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:217
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):97, 37

               
               
               Conread position:634-948
               
               
               Cow position:chr22:17652326-17652635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):18, 62

               
               
               Conread position:635-950
               
               
               Cow position:chr22:33098515-33098191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:215
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):84, 289

               
               
               Conread position:640-958
               
               
               Cow position:chr22:8800556-8800235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):77, 70

               
               
               Conread position:641-945
               
               
               Cow position:chr22:25254076-25254375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 55

               
               
               Conread position:645-926
               
               
               Cow position:chr22:4315533-4315817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):65, 72

               
               
               Conread position:647-959
               
               
               Cow position:chr22:30606771-30607074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):23, 27

               
               
               Conread position:650-942
               
               
               Cow position:chr22:24903499-24903788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):137, 58

               
               
               Conread position:650-944
               
               
               Cow position:chr22:33522956-33522678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:650-950
               
               
               Cow position:chr22:1983762-1984062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:200
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):207, 47

               
               
               Conread position:650-951
               
               
               Cow position:chr22:25809360-25809075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:650-955
               
               
               Cow position:chr22:5595898-5595597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 16

               
               
               Conread position:650-958
               
               
               Cow position:chr22:1659072-1659377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):65, 24

               
               
               Conread position:650-958
               
               
               Cow position:chr22:21413895-21414207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):54, 108

               
               
               Conread position:651-935
               
               
               Cow position:chr22:43321259-43321542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):75, 87

               
               
               Conread position:651-941
               
               
               Cow position:chr22:27275375-27275661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:651-951
               
               
               Cow position:chr22:7140553-7140855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):79, 57

               
               
               Conread position:651-959
               
               
               Cow position:chr22:2409209-2408911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):52, 17

               
               
               Conread position:651-959
               
               
               Cow position:chr22:25690370-25690066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:224
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):51, 65

               
               
               Conread position:652-873
               
               
               Cow position:chr22:26122809-26123029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):204, 59

               
               
               Conread position:652-918
               
               
               Cow position:chr22:10756601-10756868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):22, 46

               
               
               Conread position:652-949
               
               
               Cow position:chr22:18933808-18933510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:215
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):64, 14

               
               
               Conread position:653-944
               
               
               Cow position:chr22:17359391-17359672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):93, 56

               
               
               Conread position:654-867
               
               
               Cow position:chr22:23750979-23750772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:654-941
               
               
               Cow position:chr22:12678506-12678225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:202
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:654-951
               
               
               Cow position:chr22:16541738-16541443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):76, 59

               
               
               Conread position:654-951
               
               
               Cow position:chr22:21415539-21415818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):57, 17

               
               
               Conread position:655-870
               
               
               Cow position:chr22:10553770-10553557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:655-949
               
               
               Cow position:chr22:4209079-4208789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):62, 51

               
               
               Conread position:655-955
               
               
               Cow position:chr22:14214448-14214157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):68, 45

               
               
               Conread position:658-841
               
               
               Cow position:chr22:29344796-29344977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):64, 14

               
               
               Conread position:658-936
               
               
               Cow position:chr22:25846403-25846127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):116, 38

               
               
               Conread position:658-948
               
               
               Cow position:chr22:14545999-14545719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:661-941
               
               
               Cow position:chr22:43704941-43704671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):63, 23

               
               
               Conread position:661-949
               
               
               Cow position:chr22:28340113-28340390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):61, 52

               
               
               Conread position:662-879
               
               
               Cow position:chr22:45506083-45505868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):68, 23

               
               
               Conread position:664-951
               
               
               Cow position:chr22:1588217-1588501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):60, 46

               
               
               Conread position:672-941
               
               
               Cow position:chr22:5712516-5712780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):12, 55

               
               
               Conread position:673-936
               
               
               Cow position:chr22:2109690-2109439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:674-959
               
               
               Cow position:chr22:15737166-15737446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):47, 37

               
               
               Conread position:674-960
               
               
               Cow position:chr22:1500823-1501099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):49, 41

               
               
               Conread position:676-941
               
               
               Cow position:chr22:42617934-42618191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):54, 32

               
               
               Conread position:678-949
               
               
               Cow position:chr22:18099555-18099823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):28, 32

               
               
               Conread position:678-960
               
               
               Cow position:chr22:12981785-12981510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):45, 36

               
               
               Conread position:679-918
               
               
               Cow position:chr22:17119755-17119987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):27, 44

               
               
               Conread position:679-959
               
               
               Cow position:chr22:2076070-2075790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):45, 31

               
               
               Conread position:679-960
               
               
               Cow position:chr22:23265717-23265432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:680-941
               
               
               Cow position:chr22:2551001-2550740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):24, 29

               
               
               Conread position:681-937
               
               
               Cow position:chr22:26056929-26056675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):25, 172

               
               
               Conread position:681-949
               
               
               Cow position:chr22:47525690-47525947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):45, 25

               
               
               Conread position:686-959
               
               
               Cow position:chr22:28568744-28569013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):142, 24

               
               
               Conread position:688-928
               
               
               Cow position:chr22:32514237-32514479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):25, 18

               
               
               Conread position:690-937
               
               
               Cow position:chr22:23676016-23675781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):25, 16

               
               
               Conread position:691-958
               
               
               Cow position:chr22:33985853-33985591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):25, 12

               
               
               Conread position:692-959
               
               
               Cow position:chr22:16235555-16235288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):38, 22

               
               
               Conread position:694-941
               
               
               Cow position:chr22:12188527-12188278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):155, 28

               
               
               Conread position:694-941
               
               
               Cow position:chr22:12195614-12195364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):155, 28

               
               
               Conread position:695-937
               
               
               Cow position:chr22:12157892-12157657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):28, 152

               
               
               Conread position:695-960
               
               
               Cow position:chr22:7497156-7496892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):35, 21

               
               
               Conread position:696-949
               
               
               Cow position:chr22:2632796-2633052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):10, 15

               
               
               Conread position:698-940
               
               
               Cow position:chr22:12902892-12902661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):25, 71

               
               
               Conread position:701-957
               
               
               Cow position:chr22:4657084-4656834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):23, 5

               
               
               Conread position:704-941
               
               
               Cow position:chr22:24134362-24134127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):19, 66

               
               
               Conread position:705-949
               
               
               Cow position:chr22:3430151-3430399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):25, 126

               
               
               Conread position:706-951
               
               
               Cow position:chr22:42230559-42230315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):15, 69

               
               
               Conread position:707-922
               
               
               Cow position:chr22:30253164-30253393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:708-937
               
               
               Cow position:chr22:16806560-16806779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):22, 106

               
               
               Conread position:709-930
               
               
               Cow position:chr22:26803783-26804007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:709-937
               
               
               Cow position:chr22:14141376-14141149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):14, 151

               
               
               Conread position:709-951
               
               
               Cow position:chr22:4163944-4164185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):8, 57

               
               
               Conread position:709-960
               
               
               Cow position:chr22:26112332-26112583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):14, 74

               
               
               Conread position:710-927
               
               
               Cow position:chr22:30643167-30642951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):25, 145

               
               
               Conread position:710-929
               
               
               Cow position:chr22:3470254-3470473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):12, 167

               
               
               Conread position:710-938
               
               
               Cow position:chr22:17198106-17198331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):13, 5

               
               
               Conread position:710-950
               
               
               Cow position:chr22:39446258-39446499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):6, 40

               
               
               Conread position:710-959
               
               
               Cow position:chr22:3937021-3937276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):20, 170

               
               
               Conread position:710-959
               
               
               Cow position:chr22:35215515-35215766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:184
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:711-950
               
               
               Cow position:chr22:4156849-4156611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):19, 159

               
               
               Conread position:711-955
               
               
               Cow position:chr22:23372896-23372649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):19, 135

               
               
               Conread position:711-957
               
               
               Cow position:chr22:6176317-6176070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):12, 47

               
               
               Conread position:712-951
               
               
               Cow position:chr22:1776028-1776269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:714-929
               
               
               Cow position:chr22:16724716-16724504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):16, 135

               
               
               Conread position:714-941
               
               
               Cow position:chr22:33949000-33948781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):45, 24

               
               
               Conread position:714-941
               
               
               Cow position:chr22:47562674-47562907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:714-944
               
               
               Cow position:chr22:6289532-6289300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):16, 63

               
               
               Conread position:714-955
               
               
               Cow position:chr22:243084-243315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):9, 75

               
               
               Conread position:715-930
               
               
               Cow position:chr22:22433014-22433231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:715-949
               
               
               Cow position:chr22:1065077-1065311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):6, 71

               
               
               Conread position:716-941
               
               
               Cow position:chr22:16339829-16340050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):152, 0

               
               
               Conread position:716-952
               
               
               Cow position:chr22:14600361-14600125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):14, 84

               
               
               Conread position:720-955
               
               
               Cow position:chr22:30687007-30687230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):222, 16

               
               
               Conread position:721-941
               
               
               Cow position:chr22:21905451-21905664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):180, 15

               
               
               Conread position:724-948
               
               
               Cow position:chr22:2876816-2876594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):110, 122

               
               
               Conread position:724-959
               
               
               Cow position:chr22:1714883-1714645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):91, 100

               
               
               Conread position:724-959
               
               
               Cow position:chr22:16840815-16840581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):230, 0

               
               
               Conread position:725-925
               
               
               Cow position:chr22:27008017-27008217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:725-941
               
               
               Cow position:chr22:31209570-31209786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:725-942
               
               
               Cow position:chr22:26267833-26268047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):209, 31

               
               
               Conread position:725-949
               
               
               Cow position:chr22:24055369-24055593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):119, 127

               
               
               Conread position:725-959
               
               
               Cow position:chr22:14487918-14488152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):43, 51

               
               
               Conread position:726-929
               
               
               Cow position:chr22:2643914-2644117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):143, 15

               
               
               Conread position:727-937
               
               
               Cow position:chr22:45104284-45104073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):133, 11

               
               
               Conread position:727-938
               
               
               Cow position:chr22:14641872-14641663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:729-937
               
               
               Cow position:chr22:7584249-7584051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:729-938
               
               
               Cow position:chr22:14676672-14676881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:729-941
               
               
               Cow position:chr22:16813785-16813991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:731-937
               
               
               Cow position:chr22:1710518-1710726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):99, 94

               
               
               Conread position:731-950
               
               
               Cow position:chr22:11189020-11189235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):98, 52

               
               
               Conread position:731-957
               
               
               Cow position:chr22:4736012-4736236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):215, 0

               
               
               Conread position:731-960
               
               
               Cow position:chr22:1821596-1821374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):146, 0

               
               
               Conread position:731-960
               
               
               Cow position:chr22:19414048-19413819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:735-936
               
               
               Cow position:chr22:45772032-45771835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):6, 135

               
               
               Conread position:735-949
               
               
               Cow position:chr22:4628546-4628765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):84, 147

               
               
               Conread position:738-958
               
               
               Cow position:chr22:35403704-35403924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:741-960
               
               
               Cow position:chr22:23630352-23630142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:742-928
               
               
               Cow position:chr22:8330996-8331183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):25, 184

               
               
               Conread position:745-940
               
               
               Cow position:chr22:2184709-2184521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:745-959
               
               
               Cow position:chr22:7518558-7518769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):138, 122

               
               
               Conread position:745-959
               
               
               Cow position:chr22:26188873-26189086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:747-929
               
               
               Cow position:chr22:6793869-6793696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:747-947
               
               
               Cow position:chr22:35578772-35578574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):21, 27

               
               
               Conread position:747-950
               
               
               Cow position:chr22:2704303-2704504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:747-951
               
               
               Cow position:chr22:1991604-1991809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):173, 95

               
               
               Conread position:756-941
               
               
               Cow position:chr22:13951277-13951458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:757-935
               
               
               Cow position:chr22:26233647-26233823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:757-958
               
               
               Cow position:chr22:27401752-27401948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):186, 87

               
               
               Conread position:758-950
               
               
               Cow position:chr22:9735285-9735474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):181, 110

               
               
               Conread position:763-950
               
               
               Cow position:chr22:24890242-24890425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:770-937
               
               
               Cow position:chr22:2438949-2438783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):119, 80

               
               
               Conread position:773-941
               
               
               Cow position:chr22:13930311-13930476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:773-942
               
               
               Cow position:chr22:1830079-1830240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:773-947
               
               
               Cow position:chr22:1074295-1074469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:773-948
               
               
               Cow position:chr22:6106345-6106168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:773-948
               
               
               Cow position:chr22:39472127-39471952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):8, 40

               
               
               Conread position:773-949
               
               
               Cow position:chr22:11039486-11039663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):163, 0

               
               
               Conread position:773-950
               
               
               Cow position:chr22:6485993-6486169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:773-950
               
               
               Cow position:chr22:43131113-43130936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):39, 33

               
               
               Conread position:773-951
               
               
               Cow position:chr22:1728262-1728438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):97, 86

               
               
               Conread position:773-958
               
               
               Cow position:chr22:25312540-25312729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:773-959
               
               
               Cow position:chr22:30176748-30176933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):166, 0

               
               
               Conread position:774-925
               
               
               Cow position:chr22:16655706-16655560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:774-929
               
               
               Cow position:chr22:1819504-1819347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:774-937
               
               
               Cow position:chr22:28493247-28493089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):94, 33

               
               
               Conread position:774-941
               
               
               Cow position:chr22:1046160-1045992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:774-941
               
               
               Cow position:chr22:1304521-1304359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:774-941
               
               
               Cow position:chr22:10594640-10594806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:774-941
               
               
               Cow position:chr22:29219873-29219706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):79, 38

               
               
               Conread position:774-945
               
               
               Cow position:chr22:18145568-18145735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:774-945
               
               
               Cow position:chr22:30615762-30615931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:774-949
               
               
               Cow position:chr22:11497526-11497701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):68, 95

               
               
               Conread position:774-949
               
               
               Cow position:chr22:16564180-16564349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):68, 49

               
               
               Conread position:774-958
               
               
               Cow position:chr22:1105592-1105415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:774-960
               
               
               Cow position:chr22:36762070-36762253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):163, 85

               
               
               Conread position:775-930
               
               
               Cow position:chr22:35533203-35533044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:775-937
               
               
               Cow position:chr22:3541085-3540928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:775-944
               
               
               Cow position:chr22:12673302-12673133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:775-944
               
               
               Cow position:chr22:37702011-37702173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:775-951
               
               
               Cow position:chr22:35627381-35627557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):164, 56

               
               
               Conread position:775-951
               
               
               Cow position:chr22:47820471-47820645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):171, 67

               
               
               Conread position:775-958
               
               
               Cow position:chr22:41025789-41025973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):111, 26

               
               
               Conread position:775-959
               
               
               Cow position:chr22:8287216-8287389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:775-959
               
               
               Cow position:chr22:12637633-12637814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:776-959
               
               
               Cow position:chr22:9075441-9075627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:778-941
               
               
               Cow position:chr22:24557490-24557328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:780-945
               
               
               Cow position:chr22:33373277-33373443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):83, 7

               
               
               Conread position:780-951
               
               
               Cow position:chr22:23209602-23209774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):165, 0

               
               
               Conread position:780-951
               
               
               Cow position:chr22:33030836-33031015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:780-958
               
               
               Cow position:chr22:11790021-11790199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:780-960
               
               
               Cow position:chr22:18403283-18403462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:782-941
               
               
               Cow position:chr22:1973781-1973622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:782-944
               
               
               Cow position:chr22:18442709-18442546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:782-951
               
               
               Cow position:chr22:7415014-7414842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):32, 8

               
               
               Conread position:782-952
               
               
               Cow position:chr22:14602132-14601964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):159, 68

               
               
               Conread position:782-955
               
               
               Cow position:chr22:19305938-19306111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:782-957
               
               
               Cow position:chr22:6202988-6203165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):159, 0

               
               
               Conread position:782-959
               
               
               Cow position:chr22:12854065-12853885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):149, 55

               
               
               Conread position:783-939
               
               
               Cow position:chr22:30583695-30583851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:784-949
               
               
               Cow position:chr22:16639346-16639513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:787-959
               
               
               Cow position:chr22:45019601-45019434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):156, 70

               
               
               Conread position:788-958
               
               
               Cow position:chr22:4084014-4083845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):155, 0

               
               
               Conread position:790-926
               
               
               Cow position:chr22:18441129-18441265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:793-941
               
               
               Cow position:chr22:8063221-8063079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):32, 26

               
               
               Conread position:796-950
               
               
               Cow position:chr22:30293742-30293895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:796-951
               
               
               Cow position:chr22:9983774-9983619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:801-941
               
               
               Cow position:chr22:29546698-29546833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:802-941
               
               
               Cow position:chr22:13891635-13891771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):35, 51

               
               
               Conread position:808-954
               
               
               Cow position:chr22:35665813-35665663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:816-955
               
               
               Cow position:chr22:5644353-5644212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:547-958
               
               
               Cow position:chr23:13520264-13520663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 7

               
               
               Conread position:551-941
               
               
               Cow position:chr23:5451147-5451524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:264
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):159, 7

               
               
               Conread position:555-937
               
               
               Cow position:chr23:26949018-26949389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):22, 7

               
               
               Conread position:557-949
               
               
               Cow position:chr23:36244171-36244555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:264
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):62, 28

               
               
               Conread position:562-941
               
               
               Cow position:chr23:16583088-16582704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 7

               
               
               Conread position:565-808
               
               
               Cow position:chr23:1921393-1921155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):61, 25

               
               
               Conread position:565-949
               
               
               Cow position:chr23:14164572-14164166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:274
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):8, 60

               
               
               Conread position:566-874
               
               
               Cow position:chr23:18402457-18402151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):156, 127

               
               
               Conread position:566-925
               
               
               Cow position:chr23:9599331-9599674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):149, 23

               
               
               Conread position:566-937
               
               
               Cow position:chr23:4579205-4578836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:251
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):31, 59

               
               
               Conread position:566-941
               
               
               Cow position:chr23:15742927-15743293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:253
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):164, 23

               
               
               Conread position:566-951
               
               
               Cow position:chr23:39778241-39778609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 23

               
               
               Conread position:569-951
               
               
               Cow position:chr23:1883229-1883604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 16

               
               
               Conread position:569-951
               
               
               Cow position:chr23:5617412-5617789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 16

               
               
               Conread position:569-959
               
               
               Cow position:chr23:3247419-3247809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 58

               
               
               Conread position:570-960
               
               
               Cow position:chr23:12470775-12471151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:263
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):53, 15

               
               
               Conread position:572-937
               
               
               Cow position:chr23:4968687-4968333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:256
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):15, 140

               
               
               Conread position:572-941
               
               
               Cow position:chr23:33601691-33601331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:257
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):20, 135

               
               
               Conread position:573-959
               
               
               Cow position:chr23:22414453-22414089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:260
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):14, 21

               
               
               Conread position:574-705
               
               
               Cow position:chr23:33233077-33232939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:574-766
               
               
               Cow position:chr23:1670744-1670932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:574-941
               
               
               Cow position:chr23:4996260-4995894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:247
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):74, 100

               
               
               Conread position:574-960
               
               
               Cow position:chr23:16246575-16246961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:268
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):22, 38

               
               
               Conread position:574-960
               
               
               Cow position:chr23:20744752-20744363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 45

               
               
               Conread position:575-940
               
               
               Cow position:chr23:5162266-5162643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 184

               
               
               Conread position:576-766
               
               
               Cow position:chr23:26942281-26942472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):16, 27

               
               
               Conread position:576-820
               
               
               Cow position:chr23:27996978-27997212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):156, 74

               
               
               Conread position:576-863
               
               
               Cow position:chr23:6592862-6592579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):16, 139

               
               
               Conread position:576-865
               
               
               Cow position:chr23:24867147-24867438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):9, 48

               
               
               Conread position:576-903
               
               
               Cow position:chr23:7835649-7835320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):147, 130

               
               
               Conread position:576-930
               
               
               Cow position:chr23:21336647-21336278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:251
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):50, 11

               
               
               Conread position:576-941
               
               
               Cow position:chr23:4726631-4726994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 12

               
               
               Conread position:576-950
               
               
               Cow position:chr23:3282272-3281898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:262
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):141, 9

               
               
               Conread position:576-951
               
               
               Cow position:chr23:1942570-1942946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:247
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):25, 13

               
               
               Conread position:576-956
               
               
               Cow position:chr23:29626256-29626645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 48

               
               
               Conread position:576-956
               
               
               Cow position:chr23:39049580-39049219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:265
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):154, 9

               
               
               Conread position:577-736
               
               
               Cow position:chr23:38854893-38854735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):15, 49

               
               
               Conread position:577-816
               
               
               Cow position:chr23:25378496-25378726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):11, 126

               
               
               Conread position:577-848
               
               
               Cow position:chr23:40781168-40781441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):15, 48

               
               
               Conread position:577-855
               
               
               Cow position:chr23:16700200-16699923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):15, 133

               
               
               Conread position:577-869
               
               
               Cow position:chr23:7574790-7574492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:202
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):15, 84

               
               
               Conread position:577-903
               
               
               Cow position:chr23:5723385-5723701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):15, 146

               
               
               Conread position:577-944
               
               
               Cow position:chr23:33711604-33711967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 51

               
               
               Conread position:577-948
               
               
               Cow position:chr23:26795062-26794704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:258
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):43, 26

               
               
               Conread position:577-951
               
               
               Cow position:chr23:9874513-9874872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:251
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):49, 19

               
               
               Conread position:577-951
               
               
               Cow position:chr23:40778108-40778475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 77

               
               
               Conread position:577-958
               
               
               Cow position:chr23:24704123-24704501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:257
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):15, 200

               
               
               Conread position:579-855
               
               
               Cow position:chr23:19774618-19774887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):13, 46

               
               
               Conread position:579-945
               
               
               Cow position:chr23:1583375-1583723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:247
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):9, 45

               
               
               Conread position:579-958
               
               
               Cow position:chr23:41348801-41348408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:269
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):13, 295

               
               
               Conread position:581-823
               
               
               Cow position:chr23:4980699-4980460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):11, 39

               
               
               Conread position:581-831
               
               
               Cow position:chr23:3262650-3262403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):11, 124

               
               
               Conread position:581-848
               
               
               Cow position:chr23:11045333-11045598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):114, 42

               
               
               Conread position:581-855
               
               
               Cow position:chr23:13599191-13599459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):11, 44

               
               
               Conread position:581-937
               
               
               Cow position:chr23:9734260-9734618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:252
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):11, 119

               
               
               Conread position:581-941
               
               
               Cow position:chr23:39752964-39753303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:249
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):11, 39

               
               
               Conread position:581-959
               
               
               Cow position:chr23:28206457-28206818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:243
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):327, 65

               
               
               Conread position:584-846
               
               
               Cow position:chr23:40844503-40844759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):139, 59

               
               
               Conread position:585-831
               
               
               Cow position:chr23:4562736-4562980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):137, 122

               
               
               Conread position:585-860
               
               
               Cow position:chr23:40648873-40648607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):117, 38

               
               
               Conread position:585-933
               
               
               Cow position:chr23:34611619-34611302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:232
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:585-941
               
               
               Cow position:chr23:1636129-1636470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:238
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):70, 120

               
               
               Conread position:585-941
               
               
               Cow position:chr23:3967700-3967352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):183, 38

               
               
               Conread position:585-941
               
               
               Cow position:chr23:5426282-5426639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 38

               
               
               Conread position:585-941
               
               
               Cow position:chr23:18286049-18286385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):8, 21

               
               
               Conread position:585-946
               
               
               Cow position:chr23:24509553-24509891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:253
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:585-948
               
               
               Cow position:chr23:26779818-26779465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:236
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:585-949
               
               
               Cow position:chr23:3245071-3244705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 126

               
               
               Conread position:585-950
               
               
               Cow position:chr23:26986420-26986062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 38

               
               
               Conread position:586-941
               
               
               Cow position:chr23:2282322-2281986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:246
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:588-847
               
               
               Cow position:chr23:26050890-26051149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):114, 36

               
               
               Conread position:590-951
               
               
               Cow position:chr23:29801290-29801647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):134, 21

               
               
               Conread position:591-706
               
               
               Cow position:chr23:35254381-35254266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):107, 43

               
               
               Conread position:591-735
               
               
               Cow position:chr23:10014396-10014538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):111, 33

               
               
               Conread position:591-752
               
               
               Cow position:chr23:39028637-39028796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:591-757
               
               
               Cow position:chr23:32961510-32961342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:591-761
               
               
               Cow position:chr23:23113886-23114057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):28, 123

               
               
               Conread position:591-766
               
               
               Cow position:chr23:20057009-20056834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):111, 32

               
               
               Conread position:591-767
               
               
               Cow position:chr23:16664709-16664539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-811
               
               
               Cow position:chr23:6367466-6367685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):19, 34

               
               
               Conread position:591-816
               
               
               Cow position:chr23:18322559-18322347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:591-816
               
               
               Cow position:chr23:19371213-19370995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:591-832
               
               
               Cow position:chr23:39806727-39806965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):115, 25

               
               
               Conread position:591-841
               
               
               Cow position:chr23:17404696-17404943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:171
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):130, 32

               
               
               Conread position:591-841
               
               
               Cow position:chr23:36309278-36309525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):131, 33

               
               
               Conread position:591-842
               
               
               Cow position:chr23:11473647-11473399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):130, 32

               
               
               Conread position:591-842
               
               
               Cow position:chr23:24984313-24984064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):28, 62

               
               
               Conread position:591-842
               
               
               Cow position:chr23:27544686-27544933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):131, 38

               
               
               Conread position:591-854
               
               
               Cow position:chr23:1767687-1767948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):52, 19

               
               
               Conread position:591-855
               
               
               Cow position:chr23:2316653-2316906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:184
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):35, 105

               
               
               Conread position:591-855
               
               
               Cow position:chr23:3434053-3433794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-860
               
               
               Cow position:chr23:6995121-6994859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):131, 33

               
               
               Conread position:591-862
               
               
               Cow position:chr23:1742213-1742479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):131, 115

               
               
               Conread position:591-862
               
               
               Cow position:chr23:29034174-29034440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):134, 33

               
               
               Conread position:591-867
               
               
               Cow position:chr23:18296664-18296938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):29, 131

               
               
               Conread position:591-869
               
               
               Cow position:chr23:10554151-10553876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):128, 33

               
               
               Conread position:591-874
               
               
               Cow position:chr23:1923979-1923700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:591-874
               
               
               Cow position:chr23:4104262-4104535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):273, 11

               
               
               Conread position:591-874
               
               
               Cow position:chr23:4966677-4966956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):126, 52

               
               
               Conread position:591-875
               
               
               Cow position:chr23:4529026-4528738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):75, 239

               
               
               Conread position:591-875
               
               
               Cow position:chr23:21502780-21502492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):125, 32

               
               
               Conread position:591-875
               
               
               Cow position:chr23:33717683-33717404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-879
               
               
               Cow position:chr23:9268450-9268720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-890
               
               
               Cow position:chr23:21764775-21765067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):109, 32

               
               
               Conread position:591-890
               
               
               Cow position:chr23:33622295-33621996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 70

               
               
               Conread position:591-892
               
               
               Cow position:chr23:5540019-5540298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-918
               
               
               Cow position:chr23:16631125-16631451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:224
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):31, 49

               
               
               Conread position:591-925
               
               
               Cow position:chr23:21452874-21452546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:226
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):310, 32

               
               
               Conread position:591-927
               
               
               Cow position:chr23:4972640-4972953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):35, 59

               
               
               Conread position:591-928
               
               
               Cow position:chr23:26632660-26632989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:238
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):94, 32

               
               
               Conread position:591-929
               
               
               Cow position:chr23:18416191-18415867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:239
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):35, 105

               
               
               Conread position:591-930
               
               
               Cow position:chr23:349870-349530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:230
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):28, 126

               
               
               Conread position:591-930
               
               
               Cow position:chr23:11129091-11129427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:246
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):30, 12

               
               
               Conread position:591-935
               
               
               Cow position:chr23:1585528-1585203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-936
               
               
               Cow position:chr23:344317-343981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):258, 33

               
               
               Conread position:591-937
               
               
               Cow position:chr23:7845150-7845486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:244
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):29, 21

               
               
               Conread position:591-937
               
               
               Cow position:chr23:20248839-20248496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:235
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):132, 104

               
               
               Conread position:591-937
               
               
               Cow position:chr23:22804581-22804920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:239
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):45, 121

               
               
               Conread position:591-939
               
               
               Cow position:chr23:3191271-3190927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):43, 112

               
               
               Conread position:591-941
               
               
               Cow position:chr23:534086-534428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr23:1189043-1188718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):35, 56

               
               
               Conread position:591-941
               
               
               Cow position:chr23:3409047-3408684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:253
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):114, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr23:5870325-5869988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):32, 95

               
               
               Conread position:591-941
               
               
               Cow position:chr23:12334066-12334424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):96, 16

               
               
               Conread position:591-941
               
               
               Cow position:chr23:29345899-29345575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):139, 34

               
               
               Conread position:591-941
               
               
               Cow position:chr23:33153332-33152993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:246
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr23:37065698-37066058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:591-941
               
               
               Cow position:chr23:38455325-38454961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 124

               
               
               Conread position:591-945
               
               
               Cow position:chr23:34315108-34314746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:247
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):32, 118

               
               
               Conread position:591-947
               
               
               Cow position:chr23:12091502-12091152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:250
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):130, 104

               
               
               Conread position:591-948
               
               
               Cow position:chr23:5436787-5436431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 12

               
               
               Conread position:591-949
               
               
               Cow position:chr23:1655747-1656104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 119

               
               
               Conread position:591-949
               
               
               Cow position:chr23:24930212-24929859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:244
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):35, 54

               
               
               Conread position:591-949
               
               
               Cow position:chr23:25864830-25864483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:256
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):161, 35

               
               
               Conread position:591-949
               
               
               Cow position:chr23:34416418-34416778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:251
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):35, 108

               
               
               Conread position:591-949
               
               
               Cow position:chr23:36018003-36018375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:245
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):35, 126

               
               
               Conread position:591-949
               
               
               Cow position:chr23:39083310-39083663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:236
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):131, 64

               
               
               Conread position:591-950
               
               
               Cow position:chr23:7175477-7175828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:245
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):35, 54

               
               
               Conread position:591-951
               
               
               Cow position:chr23:37894-38244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:259
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):139, 69

               
               
               Conread position:591-951
               
               
               Cow position:chr23:1337444-1337095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:591-951
               
               
               Cow position:chr23:33569996-33570344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:254
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):95, 16

               
               
               Conread position:591-951
               
               
               Cow position:chr23:34356494-34356854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:257
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):35, 113

               
               
               Conread position:591-953
               
               
               Cow position:chr23:1776772-1776440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:251
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-955
               
               
               Cow position:chr23:8293362-8293726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 19

               
               
               Conread position:591-956
               
               
               Cow position:chr23:1885315-1884957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 113

               
               
               Conread position:591-956
               
               
               Cow position:chr23:40443726-40444076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:241
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):139, 58

               
               
               Conread position:591-958
               
               
               Cow position:chr23:799810-799446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:261
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):177, 55

               
               
               Conread position:591-958
               
               
               Cow position:chr23:12363761-12363396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-958
               
               
               Cow position:chr23:38973699-38974054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:250
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):36, 132

               
               
               Conread position:591-959
               
               
               Cow position:chr23:187035-187399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 33

               
               
               Conread position:591-959
               
               
               Cow position:chr23:2501996-2501636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-959
               
               
               Cow position:chr23:18902190-18901846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:248
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-959
               
               
               Cow position:chr23:32480179-32479795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:264
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):49, 284

               
               
               Conread position:591-959
               
               
               Cow position:chr23:35239203-35239569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 14

               
               
               Conread position:592-704
               
               
               Cow position:chr23:21343389-21343281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:592-720
               
               
               Cow position:chr23:22530556-22530430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):83, 31

               
               
               Conread position:592-761
               
               
               Cow position:chr23:2055564-2055729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):131, 31

               
               
               Conread position:592-809
               
               
               Cow position:chr23:4329823-4329602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:592-896
               
               
               Cow position:chr23:3727540-3727226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):36, 163

               
               
               Conread position:592-930
               
               
               Cow position:chr23:36726053-36725723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):30, 53

               
               
               Conread position:592-935
               
               
               Cow position:chr23:22496707-22496361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:246
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):31, 53

               
               
               Conread position:592-941
               
               
               Cow position:chr23:29786492-29786141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):34, 107

               
               
               Conread position:592-949
               
               
               Cow position:chr23:4810608-4810949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:243
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):34, 106

               
               
               Conread position:592-949
               
               
               Cow position:chr23:8837830-8837480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:237
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):34, 88

               
               
               Conread position:592-949
               
               
               Cow position:chr23:10085325-10084974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):31, 10

               
               
               Conread position:592-949
               
               
               Cow position:chr23:19221794-19221427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):28, 113

               
               
               Conread position:592-949
               
               
               Cow position:chr23:30585800-30585439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:252
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):104, 24

               
               
               Conread position:592-949
               
               
               Cow position:chr23:31601596-31601240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):34, 100

               
               
               Conread position:592-950
               
               
               Cow position:chr23:29521331-29521685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:227
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):34, 53

               
               
               Conread position:592-954
               
               
               Cow position:chr23:16690199-16689850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 81

               
               
               Conread position:592-959
               
               
               Cow position:chr23:25675837-25675477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:252
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):131, 37

               
               
               Conread position:593-734
               
               
               Cow position:chr23:1068454-1068318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):14, 31

               
               
               Conread position:593-752
               
               
               Cow position:chr23:3955269-3955434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:593-823
               
               
               Cow position:chr23:1647478-1647703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:593-838
               
               
               Cow position:chr23:12050224-12050458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):28, 57

               
               
               Conread position:593-875
               
               
               Cow position:chr23:11380394-11380111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):139, 109

               
               
               Conread position:593-893
               
               
               Cow position:chr23:18698169-18697866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):28, 117

               
               
               Conread position:593-941
               
               
               Cow position:chr23:39813364-39813704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 33

               
               
               Conread position:593-949
               
               
               Cow position:chr23:16847825-16848183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):34, 91

               
               
               Conread position:593-951
               
               
               Cow position:chr23:15287271-15286939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:247
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):129, 68

               
               
               Conread position:594-838
               
               
               Cow position:chr23:23409597-23409835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):7, 114

               
               
               Conread position:594-878
               
               
               Cow position:chr23:21445976-21446260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):35, 14

               
               
               Conread position:594-935
               
               
               Cow position:chr23:41472474-41472821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 215

               
               
               Conread position:594-949
               
               
               Cow position:chr23:26849041-26848685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):33, 51

               
               
               Conread position:595-875
               
               
               Cow position:chr23:1398177-1397900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):24, 75

               
               
               Conread position:595-950
               
               
               Cow position:chr23:1536185-1536530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:243
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):31, 79

               
               
               Conread position:595-955
               
               
               Cow position:chr23:20557990-20557627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:253
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):32, 120

               
               
               Conread position:596-936
               
               
               Cow position:chr23:10416565-10416231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:243
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):54, 96

               
               
               Conread position:596-937
               
               
               Cow position:chr23:20195055-20194732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:596-941
               
               
               Cow position:chr23:6223852-6224170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:596-941
               
               
               Cow position:chr23:10852911-10853249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 163

               
               
               Conread position:596-941
               
               
               Cow position:chr23:16881300-16880968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 27

               
               
               Conread position:596-945
               
               
               Cow position:chr23:6244721-6244395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:250
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):331, 27

               
               
               Conread position:597-951
               
               
               Cow position:chr23:1290159-1290518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):112, 27

               
               
               Conread position:597-958
               
               
               Cow position:chr23:5600415-5600775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):124, 96

               
               
               Conread position:598-882
               
               
               Cow position:chr23:30950824-30951104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):124, 25

               
               
               Conread position:598-949
               
               
               Cow position:chr23:18802409-18802057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 34

               
               
               Conread position:598-950
               
               
               Cow position:chr23:5437134-5436790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:601-924
               
               
               Cow position:chr23:468593-468279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):25, 103

               
               
               Conread position:601-941
               
               
               Cow position:chr23:16744415-16744745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:231
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):118, 22

               
               
               Conread position:601-955
               
               
               Cow position:chr23:5732417-5732751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:247
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:603-959
               
               
               Cow position:chr23:307326-307677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 43

               
               
               Conread position:604-879
               
               
               Cow position:chr23:28945194-28944926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):126, 22

               
               
               Conread position:604-939
               
               
               Cow position:chr23:8923477-8923799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):126, 39

               
               
               Conread position:604-949
               
               
               Cow position:chr23:4499262-4498922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:237
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):119, 91

               
               
               Conread position:604-956
               
               
               Cow position:chr23:11081128-11081476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 39

               
               
               Conread position:605-945
               
               
               Cow position:chr23:9226145-9226480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 146

               
               
               Conread position:607-949
               
               
               Cow position:chr23:3890693-3890362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:243
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):19, 81

               
               
               Conread position:607-956
               
               
               Cow position:chr23:36172395-36172749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:242
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):116, 31

               
               
               Conread position:608-939
               
               
               Cow position:chr23:5795352-5795676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:227
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):115, 15

               
               
               Conread position:608-951
               
               
               Cow position:chr23:37897790-37898129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):122, 35

               
               
               Conread position:610-766
               
               
               Cow position:chr23:4445844-4445688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):13, 48

               
               
               Conread position:612-941
               
               
               Cow position:chr23:9805873-9805561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):64, 56

               
               
               Conread position:612-950
               
               
               Cow position:chr23:40789856-40790176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):131, 11

               
               
               Conread position:613-875
               
               
               Cow position:chr23:38208601-38208865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):11, 96

               
               
               Conread position:614-938
               
               
               Cow position:chr23:35149632-35149951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):103, 29

               
               
               Conread position:615-939
               
               
               Cow position:chr23:16797929-16797611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):86, 254

               
               
               Conread position:618-807
               
               
               Cow position:chr23:9048483-9048295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):27, 88

               
               
               Conread position:618-855
               
               
               Cow position:chr23:1876594-1876830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):103, 70

               
               
               Conread position:618-949
               
               
               Cow position:chr23:14394554-14394878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):83, 28

               
               
               Conread position:618-954
               
               
               Cow position:chr23:306408-306740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:211
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):87, 28

               
               
               Conread position:618-959
               
               
               Cow position:chr23:30827863-30827541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:619-911
               
               
               Cow position:chr23:1701055-1701346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:205
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):51, 56

               
               
               Conread position:620-937
               
               
               Cow position:chr23:283502-283204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):84, 29

               
               
               Conread position:620-958
               
               
               Cow position:chr23:25883838-25884187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:243
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):77, 96

               
               
               Conread position:621-959
               
               
               Cow position:chr23:11212392-11212722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):102, 76

               
               
               Conread position:622-886
               
               
               Cow position:chr23:39275777-39276046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):78, 58

               
               
               Conread position:622-949
               
               
               Cow position:chr23:27859682-27860001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):13, 76

               
               
               Conread position:625-949
               
               
               Cow position:chr23:40330264-40329942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):237, 80

               
               
               Conread position:627-929
               
               
               Cow position:chr23:25363475-25363764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):207, 75

               
               
               Conread position:627-949
               
               
               Cow position:chr23:19173460-19173146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):217, 30

               
               
               Conread position:627-956
               
               
               Cow position:chr23:24685144-24685460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:230
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):110, 69

               
               
               Conread position:629-959
               
               
               Cow position:chr23:40348747-40348424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:229
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):41, 32

               
               
               Conread position:631-929
               
               
               Cow position:chr23:15280602-15280305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):99, 77

               
               
               Conread position:631-941
               
               
               Cow position:chr23:20539280-20539581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):80, 26

               
               
               Conread position:632-916
               
               
               Cow position:chr23:18036760-18036480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):90, 63

               
               
               Conread position:632-939
               
               
               Cow position:chr23:10497606-10497896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):136, 47

               
               
               Conread position:632-941
               
               
               Cow position:chr23:1222342-1222039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):90, 226

               
               
               Conread position:641-925
               
               
               Cow position:chr23:14651797-14651525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):55, 9

               
               
               Conread position:650-923
               
               
               Cow position:chr23:17486911-17486643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):73, 64

               
               
               Conread position:650-941
               
               
               Cow position:chr23:385397-385106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):37, 67

               
               
               Conread position:650-949
               
               
               Cow position:chr23:3293607-3293899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):57, 189

               
               
               Conread position:650-949
               
               
               Cow position:chr23:32322958-32322660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):72, 52

               
               
               Conread position:650-949
               
               
               Cow position:chr23:38264618-38264319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):124, 65

               
               
               Conread position:651-930
               
               
               Cow position:chr23:18238610-18238333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):79, 46

               
               
               Conread position:651-937
               
               
               Cow position:chr23:16780633-16780358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):215, 55

               
               
               Conread position:651-958
               
               
               Cow position:chr23:14462429-14462729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:652-855
               
               
               Cow position:chr23:2799499-2799698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):78, 18

               
               
               Conread position:652-875
               
               
               Cow position:chr23:21440084-21439862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):53, 61

               
               
               Conread position:652-960
               
               
               Cow position:chr23:14523901-14524219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:207
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):60, 54

               
               
               Conread position:653-943
               
               
               Cow position:chr23:40391395-40391679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):77, 24

               
               
               Conread position:656-944
               
               
               Cow position:chr23:11224779-11225059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:658-955
               
               
               Cow position:chr23:5881595-5881304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:210
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):289, 48

               
               
               Conread position:661-929
               
               
               Cow position:chr23:39811434-39811168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):69, 52

               
               
               Conread position:663-951
               
               
               Cow position:chr23:39302630-39302907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):88, 34

               
               
               Conread position:666-949
               
               
               Cow position:chr23:18384653-18384929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:666-955
               
               
               Cow position:chr23:35965074-35965365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):42, 188

               
               
               Conread position:670-949
               
               
               Cow position:chr23:24962930-24963212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):45, 123

               
               
               Conread position:673-935
               
               
               Cow position:chr23:40637194-40637460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):33, 38

               
               
               Conread position:673-937
               
               
               Cow position:chr23:1981716-1981475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:673-941
               
               
               Cow position:chr23:24966526-24966259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):50, 36

               
               
               Conread position:673-941
               
               
               Cow position:chr23:32166958-32167233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):51, 29

               
               
               Conread position:673-949
               
               
               Cow position:chr23:19760850-19760575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):57, 86

               
               
               Conread position:674-941
               
               
               Cow position:chr23:18822932-18823186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):56, 14

               
               
               Conread position:675-941
               
               
               Cow position:chr23:35929885-35930150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):19, 179

               
               
               Conread position:680-936
               
               
               Cow position:chr23:4877302-4877568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:181
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:682-950
               
               
               Cow position:chr23:14140554-14140824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):48, 14

               
               
               Conread position:682-950
               
               
               Cow position:chr23:40275597-40275346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):27, 20

               
               
               Conread position:684-949
               
               
               Cow position:chr23:2470945-2471215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:686-929
               
               
               Cow position:chr23:2160684-2160452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):17, 31

               
               
               Conread position:688-941
               
               
               Cow position:chr23:18692230-18691972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):17, 179

               
               
               Conread position:690-959
               
               
               Cow position:chr23:4003595-4003868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):16, 258

               
               
               Conread position:691-930
               
               
               Cow position:chr23:20093287-20093053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):32, 22

               
               
               Conread position:696-958
               
               
               Cow position:chr23:21539115-21539378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:182
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):39, 14

               
               
               Conread position:697-960
               
               
               Cow position:chr23:28590337-28590074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):9, 14

               
               
               Conread position:699-941
               
               
               Cow position:chr23:25990475-25990236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):25, 89

               
               
               Conread position:703-959
               
               
               Cow position:chr23:8698385-8698647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:705-948
               
               
               Cow position:chr23:10377389-10377143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):14, 120

               
               
               Conread position:705-949
               
               
               Cow position:chr23:37041620-37041377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):12, 51

               
               
               Conread position:708-941
               
               
               Cow position:chr23:1760875-1760631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:709-929
               
               
               Cow position:chr23:22586852-22587068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):14, 53

               
               
               Conread position:711-950
               
               
               Cow position:chr23:13137962-13137728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):13, 140

               
               
               Conread position:712-955
               
               
               Cow position:chr23:7709765-7709997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):13, 130

               
               
               Conread position:713-947
               
               
               Cow position:chr23:39203092-39202864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):78, 62

               
               
               Conread position:714-956
               
               
               Cow position:chr23:3234805-3234559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:716-941
               
               
               Cow position:chr23:39267763-39267987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):8, 157

               
               
               Conread position:716-951
               
               
               Cow position:chr23:22238842-22238608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):156, 192

               
               
               Conread position:716-955
               
               
               Cow position:chr23:4844586-4844827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):80, 125

               
               
               Conread position:720-950
               
               
               Cow position:chr23:17597410-17597633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:721-950
               
               
               Cow position:chr23:1877911-1877683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):220, 129

               
               
               Conread position:724-941
               
               
               Cow position:chr23:1652989-1653207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):27, 47

               
               
               Conread position:724-949
               
               
               Cow position:chr23:1194504-1194286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:725-929
               
               
               Cow position:chr23:33153773-33153976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:725-949
               
               
               Cow position:chr23:39333533-39333309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:725-949
               
               
               Cow position:chr23:39839408-39839632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:725-959
               
               
               Cow position:chr23:15655675-15655433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:726-956
               
               
               Cow position:chr23:18739475-18739239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:727-941
               
               
               Cow position:chr23:32173871-32173657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:729-929
               
               
               Cow position:chr23:24779550-24779350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:729-949
               
               
               Cow position:chr23:32621276-32621498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:729-959
               
               
               Cow position:chr23:40738026-40737792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:732-940
               
               
               Cow position:chr23:27848992-27849194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:738-949
               
               
               Cow position:chr23:35512262-35512047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):105, 26

               
               
               Conread position:738-959
               
               
               Cow position:chr23:3204780-3205009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:740-941
               
               
               Cow position:chr23:7155689-7155499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:741-951
               
               
               Cow position:chr23:6179540-6179336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:745-949
               
               
               Cow position:chr23:18222048-18221844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:745-956
               
               
               Cow position:chr23:29330315-29330527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:747-941
               
               
               Cow position:chr23:36200415-36200601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:748-941
               
               
               Cow position:chr23:17012727-17012540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:748-949
               
               
               Cow position:chr23:7856771-7856972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):95, 105

               
               
               Conread position:749-949
               
               
               Cow position:chr23:37456024-37455825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:750-958
               
               
               Cow position:chr23:20397452-20397244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):190, 17

               
               
               Conread position:751-941
               
               
               Cow position:chr23:24718787-24718601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:754-950
               
               
               Cow position:chr23:18611747-18611552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):178, 0

               
               
               Conread position:757-941
               
               
               Cow position:chr23:4979261-4979081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):157, 37

               
               
               Conread position:757-941
               
               
               Cow position:chr23:40501077-40500894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):181, 80

               
               
               Conread position:757-959
               
               
               Cow position:chr23:38267380-38267187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:758-945
               
               
               Cow position:chr23:28814397-28814585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:758-945
               
               
               Cow position:chr23:33232680-33232495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:764-949
               
               
               Cow position:chr23:28580559-28580372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:771-937
               
               
               Cow position:chr23:5603711-5603549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:772-958
               
               
               Cow position:chr23:35527115-35527300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):148, 0

               
               
               Conread position:773-941
               
               
               Cow position:chr23:9726505-9726337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:773-949
               
               
               Cow position:chr23:30617442-30617266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:773-951
               
               
               Cow position:chr23:17462626-17462804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):71, 99

               
               
               Conread position:773-952
               
               
               Cow position:chr23:164796-164967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):75, 80

               
               
               Conread position:773-955
               
               
               Cow position:chr23:25087366-25087184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):37, 134

               
               
               Conread position:773-959
               
               
               Cow position:chr23:1739500-1739675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:774-935
               
               
               Cow position:chr23:1510889-1510732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:774-935
               
               
               Cow position:chr23:21423805-21423962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:774-937
               
               
               Cow position:chr23:1480677-1480840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:774-937
               
               
               Cow position:chr23:15056534-15056378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:774-938
               
               
               Cow position:chr23:29607114-29607273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:774-941
               
               
               Cow position:chr23:5215879-5215710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):49, 38

               
               
               Conread position:774-941
               
               
               Cow position:chr23:5395438-5395281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:774-945
               
               
               Cow position:chr23:3983154-3982974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):14, 86

               
               
               Conread position:774-949
               
               
               Cow position:chr23:39056794-39056968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):47, 132

               
               
               Conread position:774-950
               
               
               Cow position:chr23:22530401-22530223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):165, 106

               
               
               Conread position:774-952
               
               
               Cow position:chr23:16664364-16664190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:774-957
               
               
               Cow position:chr23:35718349-35718528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:774-959
               
               
               Cow position:chr23:4416250-4416066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):169, 0

               
               
               Conread position:775-930
               
               
               Cow position:chr23:4343520-4343675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:775-938
               
               
               Cow position:chr23:32126344-32126504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:775-939
               
               
               Cow position:chr23:26029188-26029358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:775-939
               
               
               Cow position:chr23:28529916-28529751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:775-941
               
               
               Cow position:chr23:2395559-2395396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:775-941
               
               
               Cow position:chr23:9387989-9387828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:775-941
               
               
               Cow position:chr23:13380748-13380911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:775-941
               
               
               Cow position:chr23:18822397-18822230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:775-941
               
               
               Cow position:chr23:23104449-23104288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:775-941
               
               
               Cow position:chr23:37948725-37948891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):78, 104

               
               
               Conread position:775-946
               
               
               Cow position:chr23:37993210-37993383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:775-949
               
               
               Cow position:chr23:4802997-4803173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):119, 75

               
               
               Conread position:775-951
               
               
               Cow position:chr23:17792386-17792208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):162, 69

               
               
               Conread position:775-951
               
               
               Cow position:chr23:40965943-40965767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:775-958
               
               
               Cow position:chr23:19179336-19179150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):85, 134

               
               
               Conread position:775-959
               
               
               Cow position:chr23:1798149-1798339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:775-959
               
               
               Cow position:chr23:18387552-18387367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:775-960
               
               
               Cow position:chr23:4291393-4291581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):164, 0

               
               
               Conread position:776-937
               
               
               Cow position:chr23:10675891-10676052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:780-940
               
               
               Cow position:chr23:10844599-10844760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:780-941
               
               
               Cow position:chr23:4521841-4521679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:780-941
               
               
               Cow position:chr23:5605302-5605467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:780-941
               
               
               Cow position:chr23:5612562-5612727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:780-945
               
               
               Cow position:chr23:13410712-13410555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:780-955
               
               
               Cow position:chr23:34264708-34264536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:781-941
               
               
               Cow position:chr23:35656452-35656611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:781-955
               
               
               Cow position:chr23:27526629-27526801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:782-947
               
               
               Cow position:chr23:18740172-18740007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:782-960
               
               
               Cow position:chr23:15099884-15099703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):41, 30

               
               
               Conread position:783-951
               
               
               Cow position:chr23:809552-809719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:784-959
               
               
               Cow position:chr23:31262946-31263119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):148, 0

               
               
               Conread position:787-959
               
               
               Cow position:chr23:3270349-3270522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):158, 118

               
               
               Conread position:790-951
               
               
               Cow position:chr23:30867246-30867087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:790-960
               
               
               Cow position:chr23:26975411-26975247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:791-944
               
               
               Cow position:chr23:13836774-13836928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):19, 33

               
               
               Conread position:795-937
               
               
               Cow position:chr23:2511204-2511343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:797-958
               
               
               Cow position:chr23:40487906-40487745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):28, 24

               
               
               Conread position:802-948
               
               
               Cow position:chr23:2563728-2563873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:802-948
               
               
               Cow position:chr23:27307811-27307957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:539-941
               
               
               Cow position:chr24:41423386-41423770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:273
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):22, 31

               
               
               Conread position:541-841
               
               
               Cow position:chr24:16895653-16895358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):7, 28

               
               
               Conread position:544-751
               
               
               Cow position:chr24:30226723-30226928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):50, 162

               
               
               Conread position:549-745
               
               
               Cow position:chr24:12120651-12120846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):17, 37

               
               
               Conread position:555-944
               
               
               Cow position:chr24:19800644-19801017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 30

               
               
               Conread position:557-841
               
               
               Cow position:chr24:32370122-32369837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):44, 5

               
               
               Conread position:562-753
               
               
               Cow position:chr24:14729197-14729393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:563-903
               
               
               Cow position:chr24:26554797-26554457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):64, 22

               
               
               Conread position:566-736
               
               
               Cow position:chr24:5152036-5152209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):27, 107

               
               
               Conread position:566-810
               
               
               Cow position:chr24:34564928-34565166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):38, 19

               
               
               Conread position:566-927
               
               
               Cow position:chr24:7476544-7476189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):164, 21

               
               
               Conread position:566-935
               
               
               Cow position:chr24:43200470-43200088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:265
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):136, 60

               
               
               Conread position:566-937
               
               
               Cow position:chr24:17104763-17104401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 19

               
               
               Conread position:566-947
               
               
               Cow position:chr24:16509775-16510154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 141

               
               
               Conread position:566-949
               
               
               Cow position:chr24:33621683-33621295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):27, 63

               
               
               Conread position:567-842
               
               
               Cow position:chr24:8886718-8886989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):55, 95

               
               
               Conread position:569-842
               
               
               Cow position:chr24:29063836-29063580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:569-842
               
               
               Cow position:chr24:31324089-31324363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:194
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):23, 55

               
               
               Conread position:569-921
               
               
               Cow position:chr24:20942973-20943315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):29, 57

               
               
               Conread position:572-752
               
               
               Cow position:chr24:34315163-34315345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):20, 99

               
               
               Conread position:574-733
               
               
               Cow position:chr24:39493108-39493267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):156, 124

               
               
               Conread position:574-736
               
               
               Cow position:chr24:21860414-21860249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):19, 154

               
               
               Conread position:574-808
               
               
               Cow position:chr24:33222129-33221895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):14, 50

               
               
               Conread position:574-855
               
               
               Cow position:chr24:27290682-27290963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):53, 98

               
               
               Conread position:574-867
               
               
               Cow position:chr24:18331539-18331824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):148, 14

               
               
               Conread position:574-874
               
               
               Cow position:chr24:33465794-33465511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:574-937
               
               
               Cow position:chr24:1269611-1269948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:254
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):18, 50

               
               
               Conread position:574-937
               
               
               Cow position:chr24:30314217-30313858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:252
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):52, 11

               
               
               Conread position:574-952
               
               
               Cow position:chr24:10299896-10300264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:266
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):21, 76

               
               
               Conread position:574-952
               
               
               Cow position:chr24:27874411-27874759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:259
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):13, 125

               
               
               Conread position:574-954
               
               
               Cow position:chr24:31159431-31159818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:269
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):103, 49

               
               
               Conread position:574-959
               
               
               Cow position:chr24:10518376-10518748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):170, 17

               
               
               Conread position:576-753
               
               
               Cow position:chr24:27719940-27719770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):10, 49

               
               
               Conread position:576-930
               
               
               Cow position:chr24:40129937-40130300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:251
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):9, 146

               
               
               Conread position:576-941
               
               
               Cow position:chr24:16089055-16089405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:258
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):283, 13

               
               
               Conread position:576-944
               
               
               Cow position:chr24:11005485-11005851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:240
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):147, 15

               
               
               Conread position:576-949
               
               
               Cow position:chr24:7917548-7917196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:255
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):45, 9

               
               
               Conread position:576-951
               
               
               Cow position:chr24:27220272-27219903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:258
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):43, 15

               
               
               Conread position:577-703
               
               
               Cow position:chr24:5882-5754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):9, 50

               
               
               Conread position:577-791
               
               
               Cow position:chr24:28253522-28253735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):15, 41

               
               
               Conread position:577-805
               
               
               Cow position:chr24:3430550-3430775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):11, 32

               
               
               Conread position:577-839
               
               
               Cow position:chr24:43364175-43364435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:193
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):15, 94

               
               
               Conread position:577-848
               
               
               Cow position:chr24:29673335-29673606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:195
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):15, 138

               
               
               Conread position:577-855
               
               
               Cow position:chr24:18970689-18970416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):177, 11

               
               
               Conread position:577-902
               
               
               Cow position:chr24:31359142-31359454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:224
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):15, 47

               
               
               Conread position:577-937
               
               
               Cow position:chr24:17832998-17832658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:249
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):15, 130

               
               
               Conread position:577-939
               
               
               Cow position:chr24:25885344-25884975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):15, 32

               
               
               Conread position:578-929
               
               
               Cow position:chr24:17294374-17294032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:243
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):144, 108

               
               
               Conread position:578-939
               
               
               Cow position:chr24:33944221-33944579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 49

               
               
               Conread position:581-860
               
               
               Cow position:chr24:32070786-32071058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):11, 44

               
               
               Conread position:581-899
               
               
               Cow position:chr24:18025148-18024836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:581-900
               
               
               Cow position:chr24:30897718-30897403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:222
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):5, 43

               
               
               Conread position:581-941
               
               
               Cow position:chr24:25194090-25194441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:247
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):81, 43

               
               
               Conread position:581-941
               
               
               Cow position:chr24:27726193-27725833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):11, 25

               
               
               Conread position:581-955
               
               
               Cow position:chr24:11839998-11840373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:263
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):11, 134

               
               
               Conread position:581-956
               
               
               Cow position:chr24:352785-352414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 44

               
               
               Conread position:581-960
               
               
               Cow position:chr24:26929129-26928748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 133

               
               
               Conread position:581-960
               
               
               Cow position:chr24:27039862-27040243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 48

               
               
               Conread position:585-833
               
               
               Cow position:chr24:30545040-30544796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):34, 11

               
               
               Conread position:585-855
               
               
               Cow position:chr24:14171869-14171602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):117, 187

               
               
               Conread position:585-925
               
               
               Cow position:chr24:44041188-44040852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 252

               
               
               Conread position:585-929
               
               
               Cow position:chr24:23442762-23442418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):41, 62

               
               
               Conread position:585-937
               
               
               Cow position:chr24:29595986-29595629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:248
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):41, 30

               
               
               Conread position:585-941
               
               
               Cow position:chr24:5141769-5142113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):295, 38

               
               
               Conread position:585-941
               
               
               Cow position:chr24:34396349-34396015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:233
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:585-941
               
               
               Cow position:chr24:34742580-34742924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 39

               
               
               Conread position:585-941
               
               
               Cow position:chr24:38347507-38347851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):41, 114

               
               
               Conread position:585-950
               
               
               Cow position:chr24:29586818-29587184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 86

               
               
               Conread position:585-959
               
               
               Cow position:chr24:3165646-3166008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:252
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):137, 38

               
               
               Conread position:585-959
               
               
               Cow position:chr24:5633208-5632836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:245
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):145, 112

               
               
               Conread position:586-941
               
               
               Cow position:chr24:35576709-35576362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 119

               
               
               Conread position:587-941
               
               
               Cow position:chr24:17311382-17311054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:255
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):146, 25

               
               
               Conread position:588-878
               
               
               Cow position:chr24:14648521-14648244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):20, 7

               
               
               Conread position:588-948
               
               
               Cow position:chr24:37395380-37395025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):134, 38

               
               
               Conread position:589-827
               
               
               Cow position:chr24:43432621-43432854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:589-929
               
               
               Cow position:chr24:36173953-36173616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):5, 71

               
               
               Conread position:591-752
               
               
               Cow position:chr24:10213406-10213564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):83, 78

               
               
               Conread position:591-753
               
               
               Cow position:chr24:885855-885698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):83, 34

               
               
               Conread position:591-766
               
               
               Cow position:chr24:35794905-35794732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):136, 32

               
               
               Conread position:591-768
               
               
               Cow position:chr24:27270610-27270778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):37, 106

               
               
               Conread position:591-799
               
               
               Cow position:chr24:20024442-20024649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):35, 108

               
               
               Conread position:591-807
               
               
               Cow position:chr24:15707612-15707401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):29, 113

               
               
               Conread position:591-807
               
               
               Cow position:chr24:27341189-27340975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):35, 54

               
               
               Conread position:591-813
               
               
               Cow position:chr24:29180719-29180936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):119, 32

               
               
               Conread position:591-831
               
               
               Cow position:chr24:19769324-19769557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):35, 46

               
               
               Conread position:591-840
               
               
               Cow position:chr24:27052664-27052421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):36, 16

               
               
               Conread position:591-843
               
               
               Cow position:chr24:19736497-19736254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):8, 17

               
               
               Conread position:591-848
               
               
               Cow position:chr24:29679476-29679228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):35, 53

               
               
               Conread position:591-863
               
               
               Cow position:chr24:24250559-24250822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):114, 32

               
               
               Conread position:591-864
               
               
               Cow position:chr24:18771357-18771079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):106, 33

               
               
               Conread position:591-874
               
               
               Cow position:chr24:39159715-39159439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):133, 26

               
               
               Conread position:591-875
               
               
               Cow position:chr24:18390458-18390189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):226, 114

               
               
               Conread position:591-884
               
               
               Cow position:chr24:34008747-34008452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):35, 125

               
               
               Conread position:591-897
               
               
               Cow position:chr24:23187086-23186786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-910
               
               
               Cow position:chr24:39440726-39440421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):35, 107

               
               
               Conread position:591-913
               
               
               Cow position:chr24:29781995-29782311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):101, 32

               
               
               Conread position:591-915
               
               
               Cow position:chr24:16869952-16869633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):127, 93

               
               
               Conread position:591-915
               
               
               Cow position:chr24:28990395-28990711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:230
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):108, 32

               
               
               Conread position:591-925
               
               
               Cow position:chr24:20874511-20874839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 32

               
               
               Conread position:591-927
               
               
               Cow position:chr24:31816420-31816736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:235
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):146, 14

               
               
               Conread position:591-928
               
               
               Cow position:chr24:25092361-25092686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):32, 112

               
               
               Conread position:591-929
               
               
               Cow position:chr24:18741740-18741402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:232
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):131, 111

               
               
               Conread position:591-929
               
               
               Cow position:chr24:23556496-23556174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):207, 33

               
               
               Conread position:591-930
               
               
               Cow position:chr24:17407222-17407555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):32, 54

               
               
               Conread position:591-936
               
               
               Cow position:chr24:29540076-29539760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:235
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-937
               
               
               Cow position:chr24:18374609-18374935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:236
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-937
               
               
               Cow position:chr24:24457415-24457071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 79

               
               
               Conread position:591-937
               
               
               Cow position:chr24:28553716-28553401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:591-937
               
               
               Cow position:chr24:37037730-37038062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-937
               
               
               Cow position:chr24:37650501-37650846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:238
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):72, 32

               
               
               Conread position:591-938
               
               
               Cow position:chr24:19466099-19465737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:250
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):35, 133

               
               
               Conread position:591-938
               
               
               Cow position:chr24:19535421-19535080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:235
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):146, 70

               
               
               Conread position:591-941
               
               
               Cow position:chr24:3493723-3494056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:246
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):232, 33

               
               
               Conread position:591-941
               
               
               Cow position:chr24:18357222-18356882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:240
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):131, 28

               
               
               Conread position:591-941
               
               
               Cow position:chr24:22079291-22079638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 119

               
               
               Conread position:591-941
               
               
               Cow position:chr24:25320824-25321160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:237
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):29, 106

               
               
               Conread position:591-941
               
               
               Cow position:chr24:28062783-28063125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr24:28303521-28303187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):132, 24

               
               
               Conread position:591-941
               
               
               Cow position:chr24:28496752-28496408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:231
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):132, 33

               
               
               Conread position:591-941
               
               
               Cow position:chr24:30484120-30483769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 115

               
               
               Conread position:591-941
               
               
               Cow position:chr24:33372385-33372721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):60, 45

               
               
               Conread position:591-941
               
               
               Cow position:chr24:36404313-36403981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):124, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr24:41980838-41980485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:240
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):37, 130

               
               
               Conread position:591-943
               
               
               Cow position:chr24:15246804-15246482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):8, 33

               
               
               Conread position:591-945
               
               
               Cow position:chr24:10125696-10126058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):30, 129

               
               
               Conread position:591-946
               
               
               Cow position:chr24:13626113-13626466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:237
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):46, 96

               
               
               Conread position:591-946
               
               
               Cow position:chr24:27630234-27630579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:591-948
               
               
               Cow position:chr24:5754669-5755027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:246
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):266, 32

               
               
               Conread position:591-948
               
               
               Cow position:chr24:27149228-27149565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:256
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):130, 23

               
               
               Conread position:591-948
               
               
               Cow position:chr24:27906269-27906620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 51

               
               
               Conread position:591-949
               
               
               Cow position:chr24:12200582-12200225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 185

               
               
               Conread position:591-949
               
               
               Cow position:chr24:16994717-16995062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 71

               
               
               Conread position:591-949
               
               
               Cow position:chr24:25756457-25756115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):35, 57

               
               
               Conread position:591-949
               
               
               Cow position:chr24:38814799-38815157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:251
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):35, 54

               
               
               Conread position:591-949
               
               
               Cow position:chr24:39143439-39143795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:242
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):35, 106

               
               
               Conread position:591-950
               
               
               Cow position:chr24:28721722-28722065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:260
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):135, 32

               
               
               Conread position:591-950
               
               
               Cow position:chr24:39483308-39483648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-951
               
               
               Cow position:chr24:15861770-15861406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:245
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):139, 118

               
               
               Conread position:591-951
               
               
               Cow position:chr24:21519268-21519615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):35, 82

               
               
               Conread position:591-951
               
               
               Cow position:chr24:28699888-28700228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):131, 55

               
               
               Conread position:591-951
               
               
               Cow position:chr24:30229302-30229659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:258
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):31, 60

               
               
               Conread position:591-955
               
               
               Cow position:chr24:23695062-23694721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:253
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):163, 32

               
               
               Conread position:591-956
               
               
               Cow position:chr24:42825663-42825323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:253
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):131, 33

               
               
               Conread position:591-957
               
               
               Cow position:chr24:11886992-11887346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 32

               
               
               Conread position:591-958
               
               
               Cow position:chr24:32204963-32204589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:251
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):258, 33

               
               
               Conread position:591-959
               
               
               Cow position:chr24:22647511-22647142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:260
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):38, 93

               
               
               Conread position:591-959
               
               
               Cow position:chr24:27267462-27267809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:249
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):32, 109

               
               
               Conread position:591-960
               
               
               Cow position:chr24:18474914-18474535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:254
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):100, 32

               
               
               Conread position:592-752
               
               
               Cow position:chr24:17567216-17567374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):30, 104

               
               
               Conread position:592-761
               
               
               Cow position:chr24:39219011-39218842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):34, 101

               
               
               Conread position:592-767
               
               
               Cow position:chr24:18266336-18266158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):34, 106

               
               
               Conread position:592-837
               
               
               Cow position:chr24:28600032-28599786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):34, 69

               
               
               Conread position:592-860
               
               
               Cow position:chr24:17955611-17955348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):27, 126

               
               
               Conread position:592-875
               
               
               Cow position:chr24:15373241-15373517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):18, 34

               
               
               Conread position:592-875
               
               
               Cow position:chr24:28327252-28326968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):110, 27

               
               
               Conread position:592-903
               
               
               Cow position:chr24:42345173-42344857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):34, 100

               
               
               Conread position:592-941
               
               
               Cow position:chr24:2402542-2402202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:238
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):54, 32

               
               
               Conread position:592-941
               
               
               Cow position:chr24:10499046-10499393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:237
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):131, 31

               
               
               Conread position:592-941
               
               
               Cow position:chr24:19179615-19179261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 124

               
               
               Conread position:592-941
               
               
               Cow position:chr24:33098660-33098297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:252
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):27, 287

               
               
               Conread position:592-944
               
               
               Cow position:chr24:22689750-22689395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):163, 117

               
               
               Conread position:592-948
               
               
               Cow position:chr24:31812020-31812366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:245
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):68, 32

               
               
               Conread position:592-949
               
               
               Cow position:chr24:18999879-19000226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:249
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):45, 80

               
               
               Conread position:592-951
               
               
               Cow position:chr24:27608266-27607927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:250
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):117, 31

               
               
               Conread position:592-955
               
               
               Cow position:chr24:35985891-35985541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):132, 71

               
               
               Conread position:592-958
               
               
               Cow position:chr24:9036028-9036382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):34, 53

               
               
               Conread position:592-959
               
               
               Cow position:chr24:6132041-6131697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:252
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):107, 31

               
               
               Conread position:592-959
               
               
               Cow position:chr24:21606829-21606483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):131, 49

               
               
               Conread position:592-959
               
               
               Cow position:chr24:24155673-24155316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:253
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):27, 108

               
               
               Conread position:592-959
               
               
               Cow position:chr24:24491178-24490831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:255
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):354, 31

               
               
               Conread position:593-753
               
               
               Cow position:chr24:18695452-18695609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):129, 111

               
               
               Conread position:593-761
               
               
               Cow position:chr24:18405484-18405313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):109, 50

               
               
               Conread position:593-767
               
               
               Cow position:chr24:36554999-36554830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):59, 29

               
               
               Conread position:593-846
               
               
               Cow position:chr24:2096056-2095799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):107, 32

               
               
               Conread position:593-869
               
               
               Cow position:chr24:27824291-27824569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):94, 30

               
               
               Conread position:593-879
               
               
               Cow position:chr24:20250067-20249780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):33, 104

               
               
               Conread position:593-936
               
               
               Cow position:chr24:6102657-6102998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 81

               
               
               Conread position:593-944
               
               
               Cow position:chr24:211818-212148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:247
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):104, 30

               
               
               Conread position:593-960
               
               
               Cow position:chr24:18485164-18484795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 32

               
               
               Conread position:593-960
               
               
               Cow position:chr24:30235706-30236066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 31

               
               
               Conread position:594-948
               
               
               Cow position:chr24:7913836-7914191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 76

               
               
               Conread position:594-948
               
               
               Cow position:chr24:27844686-27844352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:241
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):137, 13

               
               
               Conread position:594-949
               
               
               Cow position:chr24:17860421-17860079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):108, 30

               
               
               Conread position:594-949
               
               
               Cow position:chr24:18343883-18344249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:248
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:594-952
               
               
               Cow position:chr24:16645495-16645131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:248
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):27, 120

               
               
               Conread position:594-958
               
               
               Cow position:chr24:40592550-40592902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:245
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):136, 11

               
               
               Conread position:595-853
               
               
               Cow position:chr24:43683637-43683373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):27, 111

               
               
               Conread position:595-944
               
               
               Cow position:chr24:44987548-44987192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 115

               
               
               Conread position:596-764
               
               
               Cow position:chr24:42007575-42007741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):126, 110

               
               
               Conread position:596-879
               
               
               Cow position:chr24:18017063-18017343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):130, 99

               
               
               Conread position:596-945
               
               
               Cow position:chr24:20801510-20801166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:596-949
               
               
               Cow position:chr24:6450332-6450692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:247
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):218, 129

               
               
               Conread position:596-955
               
               
               Cow position:chr24:32609478-32609838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):119, 247

               
               
               Conread position:597-933
               
               
               Cow position:chr24:35073929-35074249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:597-939
               
               
               Cow position:chr24:24755283-24755602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):38, 10

               
               
               Conread position:598-877
               
               
               Cow position:chr24:5683116-5683393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):128, 28

               
               
               Conread position:598-929
               
               
               Cow position:chr24:36008321-36008649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):9, 99

               
               
               Conread position:598-941
               
               
               Cow position:chr24:40300997-40301335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:229
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):81, 25

               
               
               Conread position:598-941
               
               
               Cow position:chr24:43371085-43371418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:230
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):125, 25

               
               
               Conread position:598-949
               
               
               Cow position:chr24:35332556-35332911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):23, 119

               
               
               Conread position:599-941
               
               
               Cow position:chr24:32739432-32739088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):35, 14

               
               
               Conread position:601-941
               
               
               Cow position:chr24:19186802-19187107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:603-922
               
               
               Cow position:chr24:39289895-39290203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):24, 40

               
               
               Conread position:604-855
               
               
               Cow position:chr24:28289402-28289162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:604-928
               
               
               Cow position:chr24:22225025-22225353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):119, 89

               
               
               Conread position:604-941
               
               
               Cow position:chr24:18281791-18281460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):126, 103

               
               
               Conread position:604-941
               
               
               Cow position:chr24:32054503-32054819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:233
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):93, 105

               
               
               Conread position:604-949
               
               
               Cow position:chr24:27918948-27919309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):13, 122

               
               
               Conread position:604-959
               
               
               Cow position:chr24:15057245-15057577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):118, 19

               
               
               Conread position:605-932
               
               
               Cow position:chr24:41755708-41756017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):117, 18

               
               
               Conread position:605-933
               
               
               Cow position:chr24:17752268-17751941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):121, 30

               
               
               Conread position:606-941
               
               
               Cow position:chr24:2675168-2675511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:240
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):216, 23

               
               
               Conread position:607-960
               
               
               Cow position:chr24:15692870-15693215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):108, 55

               
               
               Conread position:609-919
               
               
               Cow position:chr24:35059574-35059887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):88, 264

               
               
               Conread position:609-939
               
               
               Cow position:chr24:4724822-4725132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):14, 87

               
               
               Conread position:609-941
               
               
               Cow position:chr24:28699431-28699760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):43, 32

               
               
               Conread position:609-945
               
               
               Cow position:chr24:35675394-35675710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:609-949
               
               
               Cow position:chr24:20588026-20588357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):103, 15

               
               
               Conread position:613-940
               
               
               Cow position:chr24:39850031-39849718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):110, 10

               
               
               Conread position:614-941
               
               
               Cow position:chr24:29606189-29605858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):76, 13

               
               
               Conread position:616-951
               
               
               Cow position:chr24:28233904-28234227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:240
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):106, 69

               
               
               Conread position:617-941
               
               
               Cow position:chr24:389957-390275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):84, 68

               
               
               Conread position:617-950
               
               
               Cow position:chr24:26880623-26880935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:618-752
               
               
               Cow position:chr24:31382754-31382890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):84, 91

               
               
               Conread position:618-812
               
               
               Cow position:chr24:41985847-41986044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):84, 69

               
               
               Conread position:619-857
               
               
               Cow position:chr24:24662271-24662037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):108, 24

               
               
               Conread position:620-949
               
               
               Cow position:chr24:38006846-38006529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:234
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):236, 11

               
               
               Conread position:620-952
               
               
               Cow position:chr24:34390156-34390457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:620-960
               
               
               Cow position:chr24:14550657-14550984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 26

               
               
               Conread position:621-948
               
               
               Cow position:chr24:36711061-36711378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:223
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:621-957
               
               
               Cow position:chr24:10242921-10242595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):93, 49

               
               
               Conread position:624-937
               
               
               Cow position:chr24:27713541-27713239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):99, 33

               
               
               Conread position:624-950
               
               
               Cow position:chr24:40537469-40537148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):99, 59

               
               
               Conread position:624-957
               
               
               Cow position:chr24:23863771-23863435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:226
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:625-945
               
               
               Cow position:chr24:5397326-5397023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:628-944
               
               
               Cow position:chr24:2359309-2359007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):111, 78

               
               
               Conread position:628-951
               
               
               Cow position:chr24:34272679-34273004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 40

               
               
               Conread position:628-959
               
               
               Cow position:chr24:43028460-43028132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):6, 16

               
               
               Conread position:629-866
               
               
               Cow position:chr24:27418230-27418003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):96, 25

               
               
               Conread position:629-956
               
               
               Cow position:chr24:38478515-38478205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):95, 20

               
               
               Conread position:630-958
               
               
               Cow position:chr24:20594407-20594740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):69, 200

               
               
               Conread position:633-949
               
               
               Cow position:chr24:22511428-22511744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):32, 24

               
               
               Conread position:635-890
               
               
               Cow position:chr24:35150396-35150644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):91, 69

               
               
               Conread position:635-959
               
               
               Cow position:chr24:39523573-39523254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 71

               
               
               Conread position:639-935
               
               
               Cow position:chr24:37267539-37267834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):91, 58

               
               
               Conread position:641-949
               
               
               Cow position:chr24:42862509-42862808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):60, 11

               
               
               Conread position:650-875
               
               
               Cow position:chr24:39791428-39791650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):55, 67

               
               
               Conread position:650-941
               
               
               Cow position:chr24:37975092-37974808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:208
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):60, 27

               
               
               Conread position:650-957
               
               
               Cow position:chr24:35365810-35365516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):75, 34

               
               
               Conread position:652-931
               
               
               Cow position:chr24:29561683-29561414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):78, 18

               
               
               Conread position:655-941
               
               
               Cow position:chr24:18614893-18615191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):75, 55

               
               
               Conread position:657-951
               
               
               Cow position:chr24:230172-230465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:212
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):66, 45

               
               
               Conread position:658-925
               
               
               Cow position:chr24:4599610-4599870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:658-928
               
               
               Cow position:chr24:28342247-28342524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):22, 124

               
               
               Conread position:658-935
               
               
               Cow position:chr24:43832420-43832691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):56, 121

               
               
               Conread position:658-941
               
               
               Cow position:chr24:37823427-37823699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:660-951
               
               
               Cow position:chr24:880528-880806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):70, 50

               
               
               Conread position:663-941
               
               
               Cow position:chr24:28600537-28600263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):59, 192

               
               
               Conread position:664-948
               
               
               Cow position:chr24:39911134-39910849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:202
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):42, 50

               
               
               Conread position:668-950
               
               
               Cow position:chr24:27284727-27285008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):55, 34

               
               
               Conread position:671-949
               
               
               Cow position:chr24:11028777-11028504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:199
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):23, 45

               
               
               Conread position:673-941
               
               
               Cow position:chr24:20364498-20364241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):50, 11

               
               
               Conread position:673-945
               
               
               Cow position:chr24:15288732-15289007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):25, 189

               
               
               Conread position:673-949
               
               
               Cow position:chr24:27349268-27348994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):27, 45

               
               
               Conread position:673-951
               
               
               Cow position:chr24:22156055-22156334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):50, 41

               
               
               Conread position:673-954
               
               
               Cow position:chr24:18755668-18755950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):51, 11

               
               
               Conread position:673-959
               
               
               Cow position:chr24:13948033-13948315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):50, 29

               
               
               Conread position:674-937
               
               
               Cow position:chr24:2992965-2992709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):56, 35

               
               
               Conread position:674-951
               
               
               Cow position:chr24:19623771-19624051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):175, 22

               
               
               Conread position:674-955
               
               
               Cow position:chr24:29985071-29984799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):271, 44

               
               
               Conread position:677-930
               
               
               Cow position:chr24:9222468-9222216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):49, 8

               
               
               Conread position:677-949
               
               
               Cow position:chr24:38612803-38613071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):53, 25

               
               
               Conread position:677-951
               
               
               Cow position:chr24:24532093-24532356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):18, 33

               
               
               Conread position:678-951
               
               
               Cow position:chr24:3464538-3464262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):52, 31

               
               
               Conread position:680-960
               
               
               Cow position:chr24:13587069-13586797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):110, 29

               
               
               Conread position:682-960
               
               
               Cow position:chr24:24810431-24810719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):28, 272

               
               
               Conread position:694-950
               
               
               Cow position:chr24:8676755-8677009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):28, 12

               
               
               Conread position:697-941
               
               
               Cow position:chr24:44104236-44103993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:700-932
               
               
               Cow position:chr24:41916189-41916423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):23, 159

               
               
               Conread position:701-945
               
               
               Cow position:chr24:26001325-26001566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):23, 13

               
               
               Conread position:701-960
               
               
               Cow position:chr24:23575225-23574966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):25, 5

               
               
               Conread position:702-941
               
               
               Cow position:chr24:28510735-28510966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):20, 105

               
               
               Conread position:705-949
               
               
               Cow position:chr24:19730719-19730965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):5, 121

               
               
               Conread position:708-903
               
               
               Cow position:chr24:30038815-30039011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:708-951
               
               
               Cow position:chr24:36036109-36035866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):15, 11

               
               
               Conread position:709-941
               
               
               Cow position:chr24:22114671-22114904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:709-945
               
               
               Cow position:chr24:42984337-42984574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:710-941
               
               
               Cow position:chr24:15353389-15353619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):32, 5

               
               
               Conread position:711-870
               
               
               Cow position:chr24:17375585-17375746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:711-948
               
               
               Cow position:chr24:5360666-5360893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):12, 59

               
               
               Conread position:711-957
               
               
               Cow position:chr24:22133118-22133357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):12, 154

               
               
               Conread position:712-941
               
               
               Cow position:chr24:21835010-21834788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:713-930
               
               
               Cow position:chr24:11036886-11036673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):18, 149

               
               
               Conread position:714-933
               
               
               Cow position:chr24:25122294-25122504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):11, 56

               
               
               Conread position:714-959
               
               
               Cow position:chr24:37651675-37651914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):8, 149

               
               
               Conread position:717-872
               
               
               Cow position:chr24:28689620-28689775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):49, 143

               
               
               Conread position:722-948
               
               
               Cow position:chr24:13888663-13888887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:725-941
               
               
               Cow position:chr24:18730306-18730522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:725-941
               
               
               Cow position:chr24:36303355-36303134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):110, 183

               
               
               Conread position:725-949
               
               
               Cow position:chr24:17309175-17308958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):44, 31

               
               
               Conread position:725-949
               
               
               Cow position:chr24:25201245-25201470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):158, 0

               
               
               Conread position:725-949
               
               
               Cow position:chr24:34079377-34079155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):109, 74

               
               
               Conread position:725-949
               
               
               Cow position:chr24:43155339-43155115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):99, 111

               
               
               Conread position:725-958
               
               
               Cow position:chr24:10294428-10294196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):39, 49

               
               
               Conread position:726-959
               
               
               Cow position:chr24:31049582-31049818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):137, 56

               
               
               Conread position:728-941
               
               
               Cow position:chr24:22567068-22567281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):64, 52

               
               
               Conread position:728-951
               
               
               Cow position:chr24:42903774-42903996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:729-930
               
               
               Cow position:chr24:32891078-32890884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:730-927
               
               
               Cow position:chr24:32230541-32230343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):37, 151

               
               
               Conread position:730-951
               
               
               Cow position:chr24:7757739-7757955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):208, 130

               
               
               Conread position:731-949
               
               
               Cow position:chr24:17689643-17689428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):118, 101

               
               
               Conread position:734-951
               
               
               Cow position:chr24:32979197-32978990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:737-941
               
               
               Cow position:chr24:18302688-18302890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):71, 41

               
               
               Conread position:738-949
               
               
               Cow position:chr24:22419935-22420145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):182, 0

               
               
               Conread position:741-949
               
               
               Cow position:chr24:12120874-12121082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:742-952
               
               
               Cow position:chr24:33238286-33238068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:744-959
               
               
               Cow position:chr24:34595748-34595533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:745-958
               
               
               Cow position:chr24:3412665-3412873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:747-950
               
               
               Cow position:chr24:2261651-2261853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):196, 0

               
               
               Conread position:748-949
               
               
               Cow position:chr24:21715366-21715167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:748-949
               
               
               Cow position:chr24:28775573-28775373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:757-950
               
               
               Cow position:chr24:37252151-37252342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):77, 110

               
               
               Conread position:757-951
               
               
               Cow position:chr24:40025383-40025195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:761-944
               
               
               Cow position:chr24:26808589-26808769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):133, 107

               
               
               Conread position:773-934
               
               
               Cow position:chr24:27270936-27271096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):158, 0

               
               
               Conread position:773-937
               
               
               Cow position:chr24:5152533-5152697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:773-941
               
               
               Cow position:chr24:15557332-15557169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:773-941
               
               
               Cow position:chr24:26588230-26588393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:773-950
               
               
               Cow position:chr24:9300637-9300814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):76, 53

               
               
               Conread position:773-951
               
               
               Cow position:chr24:34302028-34301852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:773-952
               
               
               Cow position:chr24:35250102-35249921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):119, 146

               
               
               Conread position:774-941
               
               
               Cow position:chr24:21656417-21656585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):50, 76

               
               
               Conread position:774-941
               
               
               Cow position:chr24:24091329-24091159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:774-949
               
               
               Cow position:chr24:18810842-18811015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):157, 0

               
               
               Conread position:774-949
               
               
               Cow position:chr24:31383127-31383291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:774-949
               
               
               Cow position:chr24:40055500-40055329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:774-951
               
               
               Cow position:chr24:18750718-18750895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:774-956
               
               
               Cow position:chr24:162014-162195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):179, 0

               
               
               Conread position:774-959
               
               
               Cow position:chr24:18405270-18405088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:774-959
               
               
               Cow position:chr24:44896049-44896233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):173, 0

               
               
               Conread position:775-941
               
               
               Cow position:chr24:3148224-3148059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):50, 107

               
               
               Conread position:775-944
               
               
               Cow position:chr24:25947850-25947681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):85, 102

               
               
               Conread position:775-945
               
               
               Cow position:chr24:27066242-27066409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:775-949
               
               
               Cow position:chr24:10309652-10309821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):73, 130

               
               
               Conread position:775-950
               
               
               Cow position:chr24:18695887-18696067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:775-950
               
               
               Cow position:chr24:39903992-39903824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:775-951
               
               
               Cow position:chr24:250526-250350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:775-952
               
               
               Cow position:chr24:11836392-11836214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):171, 0

               
               
               Conread position:775-952
               
               
               Cow position:chr24:14373570-14373392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:775-956
               
               
               Cow position:chr24:6887020-6887197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):167, 90

               
               
               Conread position:775-959
               
               
               Cow position:chr24:885430-885252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:775-959
               
               
               Cow position:chr24:20017416-20017230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):171, 0

               
               
               Conread position:775-960
               
               
               Cow position:chr24:6008158-6007979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:776-947
               
               
               Cow position:chr24:36286582-36286750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):162, 76

               
               
               Conread position:776-948
               
               
               Cow position:chr24:11035493-11035330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):149, 34

               
               
               Conread position:777-954
               
               
               Cow position:chr24:27413097-27412927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:779-938
               
               
               Cow position:chr24:3193259-3193099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):7, 113

               
               
               Conread position:780-936
               
               
               Cow position:chr24:24540474-24540322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):121, 64

               
               
               Conread position:780-942
               
               
               Cow position:chr24:28787870-28788034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):108, 88

               
               
               Conread position:780-954
               
               
               Cow position:chr24:18874804-18874632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:781-948
               
               
               Cow position:chr24:23046880-23046713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:781-951
               
               
               Cow position:chr24:16640928-16641099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):158, 0

               
               
               Conread position:782-950
               
               
               Cow position:chr24:43445995-43445827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):126, 70

               
               
               Conread position:783-949
               
               
               Cow position:chr24:38428093-38427925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):160, 0

               
               
               Conread position:784-950
               
               
               Cow position:chr24:28476528-28476695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:784-951
               
               
               Cow position:chr24:4635147-4634980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:788-941
               
               
               Cow position:chr24:40578203-40578352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:788-959
               
               
               Cow position:chr24:6488233-6488399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):152, 74

               
               
               Conread position:790-959
               
               
               Cow position:chr24:25142636-25142810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:791-927
               
               
               Cow position:chr24:42008045-42008180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:791-941
               
               
               Cow position:chr24:38693851-38693702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:793-935
               
               
               Cow position:chr24:18817416-18817559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:797-950
               
               
               Cow position:chr24:22155362-22155514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):45, 8

               
               
               Conread position:801-959
               
               
               Cow position:chr24:12241756-12241915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:815-951
               
               
               Cow position:chr24:35210106-35210242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):39, 129

               
               
               Conread position:562-835
               
               
               Cow position:chr25:37594231-37594501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):13, 7

               
               
               Conread position:562-853
               
               
               Cow position:chr25:34768903-34768622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):31, 64

               
               
               Conread position:562-860
               
               
               Cow position:chr25:18564312-18564605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:211
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):13, 7

               
               
               Conread position:563-939
               
               
               Cow position:chr25:26679056-26679422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 27

               
               
               Conread position:565-941
               
               
               Cow position:chr25:20785760-20785390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 50

               
               
               Conread position:566-875
               
               
               Cow position:chr25:22531111-22531415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):41, 25

               
               
               Conread position:566-912
               
               
               Cow position:chr25:41132530-41132198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):157, 129

               
               
               Conread position:566-923
               
               
               Cow position:chr25:17342274-17342640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 159

               
               
               Conread position:566-935
               
               
               Cow position:chr25:17566412-17566783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:256
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):28, 132

               
               
               Conread position:566-935
               
               
               Cow position:chr25:36535611-36535226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:262
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):31, 142

               
               
               Conread position:566-941
               
               
               Cow position:chr25:24572899-24573255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:249
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):156, 41

               
               
               Conread position:566-958
               
               
               Cow position:chr25:18294488-18294094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:264
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):60, 19

               
               
               Conread position:568-755
               
               
               Cow position:chr25:14945624-14945436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):9, 139

               
               
               Conread position:569-948
               
               
               Cow position:chr25:20348690-20349078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):57, 117

               
               
               Conread position:569-950
               
               
               Cow position:chr25:35612474-35612094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:263
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):28, 57

               
               
               Conread position:572-916
               
               
               Cow position:chr25:8157677-8157337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):34, 54

               
               
               Conread position:574-855
               
               
               Cow position:chr25:12840894-12840604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):53, 162

               
               
               Conread position:574-912
               
               
               Cow position:chr25:16064725-16065050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:234
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):148, 132

               
               
               Conread position:574-940
               
               
               Cow position:chr25:9990257-9989906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:253
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):18, 50

               
               
               Conread position:574-941
               
               
               Cow position:chr25:2414654-2414994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):18, 50

               
               
               Conread position:574-949
               
               
               Cow position:chr25:18487496-18487879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:255
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):22, 126

               
               
               Conread position:574-949
               
               
               Cow position:chr25:33664063-33663704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:249
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):156, 27

               
               
               Conread position:574-951
               
               
               Cow position:chr25:15410082-15409715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:256
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):29, 138

               
               
               Conread position:574-956
               
               
               Cow position:chr25:24669602-24669240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:268
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):23, 51

               
               
               Conread position:575-805
               
               
               Cow position:chr25:12081487-12081258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):18, 134

               
               
               Conread position:575-950
               
               
               Cow position:chr25:30852593-30852971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:259
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):17, 49

               
               
               Conread position:576-805
               
               
               Cow position:chr25:16714437-16714205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):50, 101

               
               
               Conread position:576-875
               
               
               Cow position:chr25:36017376-36017667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):134, 47

               
               
               Conread position:577-700
               
               
               Cow position:chr25:6256101-6255975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):15, 111

               
               
               Conread position:577-875
               
               
               Cow position:chr25:15254493-15254214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):15, 48

               
               
               Conread position:577-882
               
               
               Cow position:chr25:33978377-33978081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):45, 74

               
               
               Conread position:577-896
               
               
               Cow position:chr25:25861522-25861192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):27, 196

               
               
               Conread position:578-941
               
               
               Cow position:chr25:18721275-18720930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:255
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):26, 46

               
               
               Conread position:578-959
               
               
               Cow position:chr25:36020250-36020626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:251
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):121, 13

               
               
               Conread position:579-864
               
               
               Cow position:chr25:13569329-13569053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):47, 18

               
               
               Conread position:579-936
               
               
               Cow position:chr25:20007975-20008326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 46

               
               
               Conread position:579-937
               
               
               Cow position:chr25:14512953-14513299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:246
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):97, 6

               
               
               Conread position:579-959
               
               
               Cow position:chr25:26654751-26655108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 17

               
               
               Conread position:581-911
               
               
               Cow position:chr25:15714727-15715039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):7, 43

               
               
               Conread position:581-925
               
               
               Cow position:chr25:2624651-2624975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:581-940
               
               
               Cow position:chr25:20069566-20069909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:252
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:581-949
               
               
               Cow position:chr25:6464191-6463823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 136

               
               
               Conread position:581-949
               
               
               Cow position:chr25:9315863-9316229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):20, 50

               
               
               Conread position:581-949
               
               
               Cow position:chr25:12755650-12755285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:263
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):5, 144

               
               
               Conread position:581-954
               
               
               Cow position:chr25:26523807-26524172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:582-846
               
               
               Cow position:chr25:8961618-8961875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):117, 41

               
               
               Conread position:582-929
               
               
               Cow position:chr25:40321445-40321111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):119, 42

               
               
               Conread position:582-941
               
               
               Cow position:chr25:20523384-20523041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):90, 14

               
               
               Conread position:583-839
               
               
               Cow position:chr25:20216681-20216931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):114, 8

               
               
               Conread position:584-768
               
               
               Cow position:chr25:15319766-15319947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):121, 39

               
               
               Conread position:585-824
               
               
               Cow position:chr25:6961306-6961070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):111, 25

               
               
               Conread position:585-867
               
               
               Cow position:chr25:5474379-5474104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):43, 104

               
               
               Conread position:585-941
               
               
               Cow position:chr25:5920785-5921143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 129

               
               
               Conread position:585-941
               
               
               Cow position:chr25:10643459-10643119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):115, 86

               
               
               Conread position:585-941
               
               
               Cow position:chr25:36746595-36746251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:244
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:585-951
               
               
               Cow position:chr25:17704600-17704945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):137, 85

               
               
               Conread position:586-875
               
               
               Cow position:chr25:14196708-14196995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):136, 38

               
               
               Conread position:586-960
               
               
               Cow position:chr25:26136974-26136605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 12

               
               
               Conread position:587-937
               
               
               Cow position:chr25:22730682-22731018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:245
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):33, 57

               
               
               Conread position:590-925
               
               
               Cow position:chr25:17190888-17190573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):87, 33

               
               
               Conread position:591-700
               
               
               Cow position:chr25:22332615-22332726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:591-700
               
               
               Cow position:chr25:23323057-23323166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:89
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:591-700
               
               
               Cow position:chr25:36026861-36026970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:90
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:591-735
               
               
               Cow position:chr25:35333011-35333153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):130, 117

               
               
               Conread position:591-743
               
               
               Cow position:chr25:7329401-7329551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):115, 32

               
               
               Conread position:591-753
               
               
               Cow position:chr25:5514863-5515026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:591-753
               
               
               Cow position:chr25:9961320-9961161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):41, 117

               
               
               Conread position:591-756
               
               
               Cow position:chr25:3982896-3983056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):15, 34

               
               
               Conread position:591-761
               
               
               Cow position:chr25:1735459-1735300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:591-762
               
               
               Cow position:chr25:10137951-10138118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):131, 34

               
               
               Conread position:591-805
               
               
               Cow position:chr25:19317112-19317329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):38, 17

               
               
               Conread position:591-818
               
               
               Cow position:chr25:17144277-17144505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):110, 33

               
               
               Conread position:591-820
               
               
               Cow position:chr25:11131434-11131663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):135, 33

               
               
               Conread position:591-836
               
               
               Cow position:chr25:15377181-15377421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:182
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):139, 32

               
               
               Conread position:591-842
               
               
               Cow position:chr25:6687803-6688046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):133, 24

               
               
               Conread position:591-842
               
               
               Cow position:chr25:12778675-12778440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:591-842
               
               
               Cow position:chr25:36036927-36036678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):131, 34

               
               
               Conread position:591-847
               
               
               Cow position:chr25:21895033-21894779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):107, 38

               
               
               Conread position:591-855
               
               
               Cow position:chr25:13672245-13672517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):35, 114

               
               
               Conread position:591-855
               
               
               Cow position:chr25:20133459-20133201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:192
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:591-862
               
               
               Cow position:chr25:21950979-21951251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):35, 73

               
               
               Conread position:591-866
               
               
               Cow position:chr25:15440927-15440657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):35, 168

               
               
               Conread position:591-867
               
               
               Cow position:chr25:10218197-10217923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):28, 107

               
               
               Conread position:591-870
               
               
               Cow position:chr25:28188095-28187816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):30, 112

               
               
               Conread position:591-874
               
               
               Cow position:chr25:3145697-3145978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):132, 101

               
               
               Conread position:591-874
               
               
               Cow position:chr25:22751156-22750871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):80, 33

               
               
               Conread position:591-889
               
               
               Cow position:chr25:18905738-18906034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):131, 115

               
               
               Conread position:591-911
               
               
               Cow position:chr25:23917696-23918009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):131, 96

               
               
               Conread position:591-914
               
               
               Cow position:chr25:788118-788427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):139, 32

               
               
               Conread position:591-925
               
               
               Cow position:chr25:18988233-18988558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):36, 123

               
               
               Conread position:591-929
               
               
               Cow position:chr25:13443556-13443222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 36

               
               
               Conread position:591-934
               
               
               Cow position:chr25:7380987-7380648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:231
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):17, 74

               
               
               Conread position:591-935
               
               
               Cow position:chr25:7581571-7581231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):210, 32

               
               
               Conread position:591-936
               
               
               Cow position:chr25:6683208-6682858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:243
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):132, 14

               
               
               Conread position:591-937
               
               
               Cow position:chr25:9269211-9269533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:238
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:591-939
               
               
               Cow position:chr25:16319277-16318955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:247
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):114, 32

               
               
               Conread position:591-939
               
               
               Cow position:chr25:17658466-17658807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 55

               
               
               Conread position:591-939
               
               
               Cow position:chr25:21893191-21893529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 20

               
               
               Conread position:591-939
               
               
               Cow position:chr25:24651598-24651262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):131, 105

               
               
               Conread position:591-940
               
               
               Cow position:chr25:30462446-30462125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):35, 91

               
               
               Conread position:591-940
               
               
               Cow position:chr25:35347761-35348102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr25:6803406-6803745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:236
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):28, 55

               
               
               Conread position:591-941
               
               
               Cow position:chr25:6996635-6996982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:233
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):35, 116

               
               
               Conread position:591-941
               
               
               Cow position:chr25:7216684-7217014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:244
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-941
               
               
               Cow position:chr25:11585375-11585726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:250
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):108, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr25:14791607-14791951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr25:14931910-14931554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):34, 214

               
               
               Conread position:591-941
               
               
               Cow position:chr25:18894866-18894514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:250
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):135, 33

               
               
               Conread position:591-941
               
               
               Cow position:chr25:21668099-21668445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:229
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):130, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr25:33550362-33550709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr25:41151107-41150767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):240, 27

               
               
               Conread position:591-944
               
               
               Cow position:chr25:30319596-30319248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:251
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):35, 111

               
               
               Conread position:591-949
               
               
               Cow position:chr25:1838090-1838448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 117

               
               
               Conread position:591-949
               
               
               Cow position:chr25:12261040-12260681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:246
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):28, 54

               
               
               Conread position:591-950
               
               
               Cow position:chr25:8120633-8120987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:254
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):25, 34

               
               
               Conread position:591-950
               
               
               Cow position:chr25:14720608-14720938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:249
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-950
               
               
               Cow position:chr25:19679199-19679558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 32

               
               
               Conread position:591-950
               
               
               Cow position:chr25:26087372-26087724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 99

               
               
               Conread position:591-951
               
               
               Cow position:chr25:4521981-4521633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):352, 32

               
               
               Conread position:591-951
               
               
               Cow position:chr25:7007768-7008125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:251
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):132, 33

               
               
               Conread position:591-951
               
               
               Cow position:chr25:7673133-7673511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:258
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):52, 32

               
               
               Conread position:591-951
               
               
               Cow position:chr25:17914633-17914991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:244
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):35, 108

               
               
               Conread position:591-951
               
               
               Cow position:chr25:17991730-17991387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):29, 68

               
               
               Conread position:591-951
               
               
               Cow position:chr25:40904976-40904618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:246
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):27, 101

               
               
               Conread position:591-952
               
               
               Cow position:chr25:11315763-11316110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:251
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):32, 55

               
               
               Conread position:591-954
               
               
               Cow position:chr25:21245754-21245383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:251
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):35, 44

               
               
               Conread position:591-959
               
               
               Cow position:chr25:3992647-3992998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:243
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-959
               
               
               Cow position:chr25:6474242-6473858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 36

               
               
               Conread position:591-959
               
               
               Cow position:chr25:12609198-12609561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:258
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):61, 32

               
               
               Conread position:591-959
               
               
               Cow position:chr25:30618919-30619285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 36

               
               
               Conread position:592-700
               
               
               Cow position:chr25:12204322-12204431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:91
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:592-712
               
               
               Cow position:chr25:10365897-10365779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:100
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:592-753
               
               
               Cow position:chr25:32588025-32587866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):129, 112

               
               
               Conread position:592-767
               
               
               Cow position:chr25:26270080-26269911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):130, 54

               
               
               Conread position:592-767
               
               
               Cow position:chr25:36779350-36779527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:592-799
               
               
               Cow position:chr25:33691411-33691616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):51, 27

               
               
               Conread position:592-871
               
               
               Cow position:chr25:31230381-31230118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:592-882
               
               
               Cow position:chr25:38421534-38421807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):138, 15

               
               
               Conread position:592-916
               
               
               Cow position:chr25:12293892-12293572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):34, 53

               
               
               Conread position:592-929
               
               
               Cow position:chr25:20402862-20402524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):34, 117

               
               
               Conread position:592-933
               
               
               Cow position:chr25:23829265-23828941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:223
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:592-937
               
               
               Cow position:chr25:36081731-36082061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:243
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):130, 31

               
               
               Conread position:592-941
               
               
               Cow position:chr25:19129707-19130051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 31

               
               
               Conread position:592-941
               
               
               Cow position:chr25:26700891-26701217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):138, 31

               
               
               Conread position:592-941
               
               
               Cow position:chr25:38135601-38135950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):135, 33

               
               
               Conread position:592-945
               
               
               Cow position:chr25:27532819-27532472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:237
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):31, 83

               
               
               Conread position:592-948
               
               
               Cow position:chr25:8225955-8226309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):138, 35

               
               
               Conread position:592-949
               
               
               Cow position:chr25:24207564-24207207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):108, 32

               
               
               Conread position:592-951
               
               
               Cow position:chr25:12097700-12098044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:249
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):123, 19

               
               
               Conread position:592-959
               
               
               Cow position:chr25:22315057-22315419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:247
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):108, 24

               
               
               Conread position:593-700
               
               
               Cow position:chr25:35110271-35110164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:86
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:593-736
               
               
               Cow position:chr25:36033293-36033433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):105, 30

               
               
               Conread position:593-753
               
               
               Cow position:chr25:4002653-4002814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):15, 120

               
               
               Conread position:593-755
               
               
               Cow position:chr25:16001669-16001511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:593-806
               
               
               Cow position:chr25:6886120-6885906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):33, 96

               
               
               Conread position:593-842
               
               
               Cow position:chr25:4547861-4547617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):130, 31

               
               
               Conread position:593-939
               
               
               Cow position:chr25:7750311-7750642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:244
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):129, 30

               
               
               Conread position:593-941
               
               
               Cow position:chr25:13272428-13272766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:242
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):106, 30

               
               
               Conread position:593-941
               
               
               Cow position:chr25:14833803-14833471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:235
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):137, 30

               
               
               Conread position:593-948
               
               
               Cow position:chr25:10657168-10656834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):33, 52

               
               
               Conread position:593-948
               
               
               Cow position:chr25:11066293-11065934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:240
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):33, 114

               
               
               Conread position:593-948
               
               
               Cow position:chr25:21289199-21289553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 105

               
               
               Conread position:593-949
               
               
               Cow position:chr25:8485640-8485278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:245
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):33, 114

               
               
               Conread position:593-955
               
               
               Cow position:chr25:9002530-9002880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 97

               
               
               Conread position:593-958
               
               
               Cow position:chr25:13380757-13380384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:253
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):137, 110

               
               
               Conread position:593-959
               
               
               Cow position:chr25:33959405-33959035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):33, 109

               
               
               Conread position:594-854
               
               
               Cow position:chr25:38981959-38982206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:594-927
               
               
               Cow position:chr25:23245153-23244821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:241
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):44, 29

               
               
               Conread position:594-941
               
               
               Cow position:chr25:7306158-7306487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:244
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):104, 29

               
               
               Conread position:594-941
               
               
               Cow position:chr25:16921934-16921596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 32

               
               
               Conread position:594-941
               
               
               Cow position:chr25:26133894-26134243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 104

               
               
               Conread position:595-761
               
               
               Cow position:chr25:9957183-9957020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:595-808
               
               
               Cow position:chr25:38425220-38425428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:595-842
               
               
               Cow position:chr25:25051524-25051276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):57, 28

               
               
               Conread position:595-935
               
               
               Cow position:chr25:12997449-12997811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):31, 104

               
               
               Conread position:595-937
               
               
               Cow position:chr25:5846946-5846612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:237
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):248, 32

               
               
               Conread position:595-945
               
               
               Cow position:chr25:7641593-7641254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):110, 31

               
               
               Conread position:596-934
               
               
               Cow position:chr25:10504479-10504145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):134, 28

               
               
               Conread position:596-941
               
               
               Cow position:chr25:26338308-26338657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):145, 114

               
               
               Conread position:596-944
               
               
               Cow position:chr25:6977840-6978182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):131, 59

               
               
               Conread position:597-753
               
               
               Cow position:chr25:12824162-12824005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):29, 113

               
               
               Conread position:597-945
               
               
               Cow position:chr25:34979008-34978656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):109, 26

               
               
               Conread position:597-958
               
               
               Cow position:chr25:33686820-33686466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:246
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):171, 27

               
               
               Conread position:597-959
               
               
               Cow position:chr25:10407555-10407196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:251
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):133, 66

               
               
               Conread position:598-860
               
               
               Cow position:chr25:36761966-36762224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:598-949
               
               
               Cow position:chr25:7011113-7010765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:240
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):35, 92

               
               
               Conread position:599-809
               
               
               Cow position:chr25:24051824-24052034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):101, 24

               
               
               Conread position:599-941
               
               
               Cow position:chr25:14152046-14152385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):10, 92

               
               
               Conread position:599-941
               
               
               Cow position:chr25:20664436-20664082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:234
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:600-959
               
               
               Cow position:chr25:18156424-18156074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:246
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):132, 59

               
               
               Conread position:603-916
               
               
               Cow position:chr25:15634611-15634294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):23, 106

               
               
               Conread position:603-941
               
               
               Cow position:chr25:4245555-4245862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:603-941
               
               
               Cow position:chr25:9843039-9843378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:233
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):15, 68

               
               
               Conread position:603-941
               
               
               Cow position:chr25:12510144-12509824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):94, 20

               
               
               Conread position:603-945
               
               
               Cow position:chr25:22756474-22756812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:230
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):127, 106

               
               
               Conread position:604-935
               
               
               Cow position:chr25:36835558-36835241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):113, 45

               
               
               Conread position:604-950
               
               
               Cow position:chr25:448301-447957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:237
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):150, 91

               
               
               Conread position:604-951
               
               
               Cow position:chr25:23053425-23053770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:237
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):70, 64

               
               
               Conread position:607-856
               
               
               Cow position:chr25:14157491-14157741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):112, 16

               
               
               Conread position:607-941
               
               
               Cow position:chr25:23913255-23913585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):91, 58

               
               
               Conread position:609-944
               
               
               Cow position:chr25:22346644-22346983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):88, 99

               
               
               Conread position:610-947
               
               
               Cow position:chr25:27868674-27869014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):123, 97

               
               
               Conread position:612-941
               
               
               Cow position:chr25:4488794-4489100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:612-945
               
               
               Cow position:chr25:13099602-13099274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:214
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):233, 12

               
               
               Conread position:612-948
               
               
               Cow position:chr25:18202052-18201725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 105

               
               
               Conread position:612-950
               
               
               Cow position:chr25:6292441-6292775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):118, 97

               
               
               Conread position:612-952
               
               
               Cow position:chr25:1762970-1763293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:244
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):118, 31

               
               
               Conread position:612-960
               
               
               Cow position:chr25:33457604-33457940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:242
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):110, 11

               
               
               Conread position:613-937
               
               
               Cow position:chr25:11051405-11051715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):108, 10

               
               
               Conread position:613-951
               
               
               Cow position:chr25:20157423-20157086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):109, 44

               
               
               Conread position:617-842
               
               
               Cow position:chr25:24066781-24066565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):15, 46

               
               
               Conread position:618-927
               
               
               Cow position:chr25:36872241-36872546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 89

               
               
               Conread position:618-935
               
               
               Cow position:chr25:19364180-19363869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:224
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):105, 13

               
               
               Conread position:618-941
               
               
               Cow position:chr25:30816765-30817089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 91

               
               
               Conread position:618-958
               
               
               Cow position:chr25:26225146-26224825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:233
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):97, 84

               
               
               Conread position:619-941
               
               
               Cow position:chr25:33557154-33557463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:619-950
               
               
               Cow position:chr25:19849743-19850071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):86, 53

               
               
               Conread position:619-957
               
               
               Cow position:chr25:27801167-27801493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):204, 89

               
               
               Conread position:620-955
               
               
               Cow position:chr25:17119626-17119959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 66

               
               
               Conread position:620-959
               
               
               Cow position:chr25:11433072-11432739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:238
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):57, 206

               
               
               Conread position:622-860
               
               
               Cow position:chr25:14117976-14118205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):100, 73

               
               
               Conread position:624-928
               
               
               Cow position:chr25:25716537-25716829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):23, 47

               
               
               Conread position:624-948
               
               
               Cow position:chr25:7816869-7817189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):50, 19

               
               
               Conread position:627-951
               
               
               Cow position:chr25:1824207-1823883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 42

               
               
               Conread position:627-958
               
               
               Cow position:chr25:36555801-36555482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):311, 80

               
               
               Conread position:628-875
               
               
               Cow position:chr25:12252923-12252673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):74, 136

               
               
               Conread position:629-959
               
               
               Cow position:chr25:22317571-22317898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):101, 68

               
               
               Conread position:631-952
               
               
               Cow position:chr25:17474619-17474305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:227
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):91, 11

               
               
               Conread position:640-875
               
               
               Cow position:chr25:26051803-26052037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):82, 12

               
               
               Conread position:643-946
               
               
               Cow position:chr25:13325485-13325774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:210
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):87, 15

               
               
               Conread position:649-949
               
               
               Cow position:chr25:26578701-26578395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):52, 203

               
               
               Conread position:649-955
               
               
               Cow position:chr25:11956717-11957016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):289, 17

               
               
               Conread position:650-948
               
               
               Cow position:chr25:9968363-9968659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:198
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):80, 19

               
               
               Conread position:652-852
               
               
               Cow position:chr25:23817935-23817729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:652-937
               
               
               Cow position:chr25:7799466-7799745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):194, 57

               
               
               Conread position:652-949
               
               
               Cow position:chr25:34242184-34241881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):204, 38

               
               
               Conread position:652-955
               
               
               Cow position:chr25:12305189-12305490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:653-820
               
               
               Cow position:chr25:7023080-7023247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):69, 42

               
               
               Conread position:653-941
               
               
               Cow position:chr25:12806958-12807236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):208, 41

               
               
               Conread position:653-941
               
               
               Cow position:chr25:13621445-13621165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):63, 44

               
               
               Conread position:653-958
               
               
               Cow position:chr25:33773866-33773556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):201, 31

               
               
               Conread position:655-922
               
               
               Cow position:chr25:7805880-7806146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):173, 83

               
               
               Conread position:655-945
               
               
               Cow position:chr25:35052705-35052417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):75, 42

               
               
               Conread position:656-955
               
               
               Cow position:chr25:433132-432838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:215
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):65, 52

               
               
               Conread position:657-950
               
               
               Cow position:chr25:41130146-41130436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):65, 45

               
               
               Conread position:664-930
               
               
               Cow position:chr25:8346077-8345815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):59, 42

               
               
               Conread position:668-941
               
               
               Cow position:chr25:5646584-5646312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):34, 62

               
               
               Conread position:673-935
               
               
               Cow position:chr25:1840255-1840512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):35, 197

               
               
               Conread position:673-949
               
               
               Cow position:chr25:21183815-21184091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):53, 22

               
               
               Conread position:674-948
               
               
               Cow position:chr25:33555543-33555812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):56, 32

               
               
               Conread position:676-941
               
               
               Cow position:chr25:19478610-19478887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):54, 29

               
               
               Conread position:677-941
               
               
               Cow position:chr25:35762528-35762785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):48, 20

               
               
               Conread position:682-940
               
               
               Cow position:chr25:21501109-21500846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):22, 146

               
               
               Conread position:683-950
               
               
               Cow position:chr25:35884787-35885057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):47, 32

               
               
               Conread position:691-944
               
               
               Cow position:chr25:18760755-18760511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):32, 10

               
               
               Conread position:694-938
               
               
               Cow position:chr25:5797458-5797701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):37, 15

               
               
               Conread position:695-935
               
               
               Cow position:chr25:26306251-26306012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):28, 163

               
               
               Conread position:696-941
               
               
               Cow position:chr25:22298590-22298829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):14, 121

               
               
               Conread position:696-959
               
               
               Cow position:chr25:28597656-28597391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):70, 20

               
               
               Conread position:696-960
               
               
               Cow position:chr25:31101810-31102070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):18, 73

               
               
               Conread position:698-958
               
               
               Cow position:chr25:9025083-9025339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):25, 16

               
               
               Conread position:705-938
               
               
               Cow position:chr25:31514148-31514378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:176
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:710-935
               
               
               Cow position:chr25:13222868-13223088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):13, 134

               
               
               Conread position:710-937
               
               
               Cow position:chr25:9615805-9616031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):20, 160

               
               
               Conread position:710-941
               
               
               Cow position:chr25:22348495-22348261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:710-949
               
               
               Cow position:chr25:33311359-33311118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:710-955
               
               
               Cow position:chr25:7726629-7726876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:182
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:711-924
               
               
               Cow position:chr25:9107555-9107353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):11, 134

               
               
               Conread position:711-937
               
               
               Cow position:chr25:13826405-13826624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:711-949
               
               
               Cow position:chr25:12657340-12657101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:711-949
               
               
               Cow position:chr25:17918943-17919183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):19, 187

               
               
               Conread position:711-959
               
               
               Cow position:chr25:11780248-11780480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):246, 57

               
               
               Conread position:714-937
               
               
               Cow position:chr25:18288796-18288577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):9, 43

               
               
               Conread position:716-929
               
               
               Cow position:chr25:35339216-35339005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):7, 143

               
               
               Conread position:716-959
               
               
               Cow position:chr25:28423117-28423363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:721-952
               
               
               Cow position:chr25:36873353-36873132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:722-949
               
               
               Cow position:chr25:23520047-23519832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:724-941
               
               
               Cow position:chr25:3744762-3744537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:724-944
               
               
               Cow position:chr25:20487461-20487235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:724-945
               
               
               Cow position:chr25:14225345-14225568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:725-950
               
               
               Cow position:chr25:8863408-8863181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):109, 99

               
               
               Conread position:726-935
               
               
               Cow position:chr25:26072572-26072372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):179, 46

               
               
               Conread position:726-944
               
               
               Cow position:chr25:33101620-33101413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:729-937
               
               
               Cow position:chr25:12195238-12195027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):93, 59

               
               
               Conread position:729-941
               
               
               Cow position:chr25:9574142-9573938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:729-941
               
               
               Cow position:chr25:20202901-20203105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:729-949
               
               
               Cow position:chr25:36873068-36872850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:730-951
               
               
               Cow position:chr25:5807934-5808155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):170, 179

               
               
               Conread position:734-941
               
               
               Cow position:chr25:8347645-8347855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):190, 135

               
               
               Conread position:743-930
               
               
               Cow position:chr25:18646587-18646766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:743-941
               
               
               Cow position:chr25:24115314-24115118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:745-950
               
               
               Cow position:chr25:11060136-11060339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):138, 101

               
               
               Conread position:747-927
               
               
               Cow position:chr25:23323496-23323680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:747-959
               
               
               Cow position:chr25:14164205-14164411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:750-941
               
               
               Cow position:chr25:15349896-15349712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:751-951
               
               
               Cow position:chr25:18551324-18551127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:756-930
               
               
               Cow position:chr25:26061712-26061538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:757-937
               
               
               Cow position:chr25:11857971-11857793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):11, 19

               
               
               Conread position:757-945
               
               
               Cow position:chr25:13823703-13823518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:757-958
               
               
               Cow position:chr25:22565942-22565750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):185, 52

               
               
               Conread position:757-960
               
               
               Cow position:chr25:5791701-5791497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):73, 93

               
               
               Conread position:760-949
               
               
               Cow position:chr25:3141522-3141706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:768-924
               
               
               Cow position:chr25:447876-447726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:773-937
               
               
               Cow position:chr25:37965289-37965456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):60, 77

               
               
               Conread position:773-938
               
               
               Cow position:chr25:27825133-27825298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:773-941
               
               
               Cow position:chr25:26989229-26989397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):89, 160

               
               
               Conread position:773-949
               
               
               Cow position:chr25:7277293-7277120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:773-956
               
               
               Cow position:chr25:33100607-33100784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:773-959
               
               
               Cow position:chr25:18491070-18491250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:774-925
               
               
               Cow position:chr25:11855516-11855366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:774-949
               
               
               Cow position:chr25:7403308-7403133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:774-949
               
               
               Cow position:chr25:31657244-31657075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:774-949
               
               
               Cow position:chr25:36369852-36370026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):130, 32

               
               
               Conread position:774-949
               
               
               Cow position:chr25:36375543-36375717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):130, 32

               
               
               Conread position:774-953
               
               
               Cow position:chr25:18934602-18934426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):164, 81

               
               
               Conread position:774-955
               
               
               Cow position:chr25:4157213-4157035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):164, 92

               
               
               Conread position:774-959
               
               
               Cow position:chr25:7311363-7311180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):155, 0

               
               
               Conread position:774-959
               
               
               Cow position:chr25:8411001-8410821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:775-941
               
               
               Cow position:chr25:1509932-1509766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):91, 66

               
               
               Conread position:775-941
               
               
               Cow position:chr25:17724190-17724023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:775-941
               
               
               Cow position:chr25:22373456-22373289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:775-945
               
               
               Cow position:chr25:14210017-14210177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:775-945
               
               
               Cow position:chr25:26269683-26269513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):37, 33

               
               
               Conread position:775-951
               
               
               Cow position:chr25:21547191-21547364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:775-951
               
               
               Cow position:chr25:22154058-22154239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:775-960
               
               
               Cow position:chr25:15999518-15999332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):103, 66

               
               
               Conread position:776-927
               
               
               Cow position:chr25:7622854-7623005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:777-951
               
               
               Cow position:chr25:15305714-15305886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):94, 41

               
               
               Conread position:780-937
               
               
               Cow position:chr25:9640998-9640841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:782-941
               
               
               Cow position:chr25:33272674-33272835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:782-956
               
               
               Cow position:chr25:20085618-20085790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:783-927
               
               
               Cow position:chr25:22571000-22571142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:783-959
               
               
               Cow position:chr25:21082365-21082191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:787-959
               
               
               Cow position:chr25:7185230-7185055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):153, 0

               
               
               Conread position:790-941
               
               
               Cow position:chr25:30709299-30709148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):115, 119

               
               
               Conread position:792-951
               
               
               Cow position:chr25:28940090-28939933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:792-956
               
               
               Cow position:chr25:26642858-26643021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):58, 153

               
               
               Conread position:793-950
               
               
               Cow position:chr25:22119605-22119447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):137, 112

               
               
               Conread position:796-951
               
               
               Cow position:chr25:19460128-19460283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:797-937
               
               
               Cow position:chr25:37648838-37648975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:797-940
               
               
               Cow position:chr25:13470658-13470515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:801-941
               
               
               Cow position:chr25:7864393-7864528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:815-935
               
               
               Cow position:chr25:13384556-13384678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:852-959
               
               
               Cow position:chr25:24147850-24147740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:483-959
               
               
               Cow position:chr26:587105-586640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 26

               
               
               Conread position:534-843
               
               
               Cow position:chr26:30568843-30568542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:220
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):20, 39

               
               
               Conread position:557-736
               
               
               Cow position:chr26:23926149-23925971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):18, 68

               
               
               Conread position:562-791
               
               
               Cow position:chr26:1587436-1587654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:566-842
               
               
               Cow position:chr26:34108608-34108878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):25, 60

               
               
               Conread position:566-855
               
               
               Cow position:chr26:33567199-33566911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:206
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):28, 42

               
               
               Conread position:566-875
               
               
               Cow position:chr26:32776664-32776360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):57, 19

               
               
               Conread position:566-934
               
               
               Cow position:chr26:17057526-17057883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 55

               
               
               Conread position:574-706
               
               
               Cow position:chr26:10768057-10767925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):18, 51

               
               
               Conread position:574-842
               
               
               Cow position:chr26:8642798-8643061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):57, 196

               
               
               Conread position:574-927
               
               
               Cow position:chr26:33736696-33736357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):18, 39

               
               
               Conread position:574-940
               
               
               Cow position:chr26:798446-798093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:249
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):28, 79

               
               
               Conread position:574-941
               
               
               Cow position:chr26:18825426-18825068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):155, 49

               
               
               Conread position:576-811
               
               
               Cow position:chr26:16179423-16179651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:576-848
               
               
               Cow position:chr26:11134833-11134562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):126, 15

               
               
               Conread position:576-945
               
               
               Cow position:chr26:21242959-21243307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 15

               
               
               Conread position:576-959
               
               
               Cow position:chr26:26294338-26293947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:272
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):140, 20

               
               
               Conread position:577-750
               
               
               Cow position:chr26:3182088-3181911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):16, 48

               
               
               Conread position:577-855
               
               
               Cow position:chr26:33011811-33011537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):15, 130

               
               
               Conread position:577-860
               
               
               Cow position:chr26:613818-613535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):97, 19

               
               
               Conread position:577-860
               
               
               Cow position:chr26:19774447-19774162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 141

               
               
               Conread position:577-937
               
               
               Cow position:chr26:3072106-3071770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:242
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):19, 47

               
               
               Conread position:577-941
               
               
               Cow position:chr26:25526103-25526462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 49

               
               
               Conread position:577-950
               
               
               Cow position:chr26:7148438-7148076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:253
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):15, 50

               
               
               Conread position:577-960
               
               
               Cow position:chr26:19459537-19459931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 79

               
               
               Conread position:578-867
               
               
               Cow position:chr26:16921799-16922083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):270, 32

               
               
               Conread position:578-941
               
               
               Cow position:chr26:9604415-9604771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:255
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):29, 53

               
               
               Conread position:578-950
               
               
               Cow position:chr26:20260435-20260807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 177

               
               
               Conread position:578-960
               
               
               Cow position:chr26:4854391-4854779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 239

               
               
               Conread position:579-855
               
               
               Cow position:chr26:22152087-22152360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):40, 9

               
               
               Conread position:579-902
               
               
               Cow position:chr26:31605265-31605586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):8, 45

               
               
               Conread position:579-941
               
               
               Cow position:chr26:31781822-31782169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:235
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):106, 8

               
               
               Conread position:580-831
               
               
               Cow position:chr26:6475568-6475320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):90, 9

               
               
               Conread position:580-951
               
               
               Cow position:chr26:6714429-6714073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:258
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):234, 18

               
               
               Conread position:581-752
               
               
               Cow position:chr26:25737332-25737501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):11, 117

               
               
               Conread position:581-820
               
               
               Cow position:chr26:25299461-25299697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):6, 29

               
               
               Conread position:581-937
               
               
               Cow position:chr26:26888269-26887926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:244
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:581-941
               
               
               Cow position:chr26:33202194-33201855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):5, 43

               
               
               Conread position:581-944
               
               
               Cow position:chr26:21418591-21418234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 121

               
               
               Conread position:581-956
               
               
               Cow position:chr26:22349151-22348779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:268
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):11, 68

               
               
               Conread position:581-957
               
               
               Cow position:chr26:28251008-28251388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 276

               
               
               Conread position:582-951
               
               
               Cow position:chr26:33074636-33074269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 45

               
               
               Conread position:584-820
               
               
               Cow position:chr26:29340748-29340988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):38, 75

               
               
               Conread position:585-761
               
               
               Cow position:chr26:32013493-32013672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):25, 35

               
               
               Conread position:585-793
               
               
               Cow position:chr26:10747759-10747563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):137, 11

               
               
               Conread position:585-842
               
               
               Cow position:chr26:34847608-34847864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):135, 38

               
               
               Conread position:585-879
               
               
               Cow position:chr26:23315636-23315928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):117, 38

               
               
               Conread position:585-941
               
               
               Cow position:chr26:21637167-21636836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:245
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):138, 39

               
               
               Conread position:585-948
               
               
               Cow position:chr26:35448927-35449278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 41

               
               
               Conread position:585-949
               
               
               Cow position:chr26:8810996-8811354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:588-941
               
               
               Cow position:chr26:818596-818236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):37, 58

               
               
               Conread position:591-688
               
               
               Cow position:chr26:30806636-30806537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:83
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:591-700
               
               
               Cow position:chr26:27594503-27594613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:591-752
               
               
               Cow position:chr26:6447731-6447567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):18, 35

               
               
               Conread position:591-759
               
               
               Cow position:chr26:8819991-8819821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:591-765
               
               
               Cow position:chr26:9850229-9850054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):32, 80

               
               
               Conread position:591-765
               
               
               Cow position:chr26:9853739-9853564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):32, 80

               
               
               Conread position:591-842
               
               
               Cow position:chr26:13021273-13021025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:171
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-849
               
               
               Cow position:chr26:14578198-14578447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):29, 53

               
               
               Conread position:591-853
               
               
               Cow position:chr26:2739584-2739324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):139, 19

               
               
               Conread position:591-865
               
               
               Cow position:chr26:6252723-6252999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):134, 173

               
               
               Conread position:591-869
               
               
               Cow position:chr26:22354285-22354561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):131, 115

               
               
               Conread position:591-872
               
               
               Cow position:chr26:23583074-23582794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-899
               
               
               Cow position:chr26:15200646-15200337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):28, 83

               
               
               Conread position:591-926
               
               
               Cow position:chr26:27491629-27491295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:231
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):114, 32

               
               
               Conread position:591-928
               
               
               Cow position:chr26:13801987-13802311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):83, 26

               
               
               Conread position:591-935
               
               
               Cow position:chr26:6837683-6838027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):241, 110

               
               
               Conread position:591-935
               
               
               Cow position:chr26:32897999-32897670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:244
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):114, 32

               
               
               Conread position:591-937
               
               
               Cow position:chr26:14905938-14905605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):142, 5

               
               
               Conread position:591-937
               
               
               Cow position:chr26:22249606-22249278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:242
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):42, 33

               
               
               Conread position:591-940
               
               
               Cow position:chr26:31633598-31633946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 120

               
               
               Conread position:591-940
               
               
               Cow position:chr26:33112510-33112171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:239
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):238, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr26:4585336-4584996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):40, 80

               
               
               Conread position:591-941
               
               
               Cow position:chr26:7315230-7314877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):218, 33

               
               
               Conread position:591-941
               
               
               Cow position:chr26:10973984-10974344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:248
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):38, 21

               
               
               Conread position:591-941
               
               
               Cow position:chr26:12964824-12964466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:248
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr26:17148576-17148933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):87, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr26:20291810-20291477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-941
               
               
               Cow position:chr26:25393903-25394257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr26:34060205-34060551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:591-942
               
               
               Cow position:chr26:20769727-20770067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-944
               
               
               Cow position:chr26:16549857-16550206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):199, 33

               
               
               Conread position:591-944
               
               
               Cow position:chr26:23848930-23848577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):36, 119

               
               
               Conread position:591-945
               
               
               Cow position:chr26:16783696-16784046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):111, 32

               
               
               Conread position:591-947
               
               
               Cow position:chr26:4167489-4167128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:247
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):10, 137

               
               
               Conread position:591-948
               
               
               Cow position:chr26:9491798-9492141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):119, 32

               
               
               Conread position:591-948
               
               
               Cow position:chr26:29332962-29333311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:246
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):32, 77

               
               
               Conread position:591-949
               
               
               Cow position:chr26:829683-830037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:251
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):28, 44

               
               
               Conread position:591-949
               
               
               Cow position:chr26:7642705-7642350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:249
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):30, 101

               
               
               Conread position:591-949
               
               
               Cow position:chr26:26950573-26950238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:246
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):112, 32

               
               
               Conread position:591-951
               
               
               Cow position:chr26:14175152-14175519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:257
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):83, 31

               
               
               Conread position:591-959
               
               
               Cow position:chr26:6794016-6794381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:267
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):35, 85

               
               
               Conread position:591-959
               
               
               Cow position:chr26:23142233-23141869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:254
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):38, 54

               
               
               Conread position:591-959
               
               
               Cow position:chr26:32672566-32672191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:247
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):42, 114

               
               
               Conread position:592-808
               
               
               Cow position:chr26:21991974-21992188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):17, 115

               
               
               Conread position:592-875
               
               
               Cow position:chr26:9104409-9104126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):27, 93

               
               
               Conread position:592-875
               
               
               Cow position:chr26:11263514-11263790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):130, 112

               
               
               Conread position:592-894
               
               
               Cow position:chr26:31903037-31903338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 104

               
               
               Conread position:592-896
               
               
               Cow position:chr26:24629613-24629906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):34, 100

               
               
               Conread position:592-921
               
               
               Cow position:chr26:8818497-8818826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):36, 9

               
               
               Conread position:592-935
               
               
               Cow position:chr26:3726257-3726612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):62, 101

               
               
               Conread position:592-935
               
               
               Cow position:chr26:14174173-14174514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 108

               
               
               Conread position:592-941
               
               
               Cow position:chr26:9535391-9535729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:592-947
               
               
               Cow position:chr26:23097305-23096971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:251
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):112, 54

               
               
               Conread position:592-948
               
               
               Cow position:chr26:34027167-34026811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 75

               
               
               Conread position:592-949
               
               
               Cow position:chr26:4363173-4363523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:238
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):27, 64

               
               
               Conread position:592-949
               
               
               Cow position:chr26:12145246-12144893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 32

               
               
               Conread position:592-949
               
               
               Cow position:chr26:31856576-31856931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:247
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):31, 64

               
               
               Conread position:592-951
               
               
               Cow position:chr26:27930457-27930113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):32, 53

               
               
               Conread position:592-955
               
               
               Cow position:chr26:14291680-14292034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):132, 78

               
               
               Conread position:592-959
               
               
               Cow position:chr26:34660717-34661078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:246
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):35, 82

               
               
               Conread position:592-960
               
               
               Cow position:chr26:33253448-33253082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 126

               
               
               Conread position:593-736
               
               
               Cow position:chr26:21351564-21351704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:593-842
               
               
               Cow position:chr26:8700172-8699927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):129, 25

               
               
               Conread position:593-848
               
               
               Cow position:chr26:5246608-5246352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):31, 19

               
               
               Conread position:593-882
               
               
               Cow position:chr26:2531307-2531033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:593-929
               
               
               Cow position:chr26:35704264-35704577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):128, 30

               
               
               Conread position:593-941
               
               
               Cow position:chr26:19446001-19446353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:245
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):106, 30

               
               
               Conread position:593-941
               
               
               Cow position:chr26:33096688-33096339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:234
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):29, 99

               
               
               Conread position:593-958
               
               
               Cow position:chr26:21912661-21913036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:258
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):30, 115

               
               
               Conread position:593-959
               
               
               Cow position:chr26:34314563-34314913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):347, 124

               
               
               Conread position:593-960
               
               
               Cow position:chr26:10764097-10764449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:594-819
               
               
               Cow position:chr26:32682991-32683213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):32, 79

               
               
               Conread position:595-954
               
               
               Cow position:chr26:32601229-32601585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:244
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):59, 46

               
               
               Conread position:596-929
               
               
               Cow position:chr26:14951266-14950943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:224
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):109, 21

               
               
               Conread position:596-948
               
               
               Cow position:chr26:647843-647500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:244
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):107, 27

               
               
               Conread position:596-959
               
               
               Cow position:chr26:22892565-22892213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 28

               
               
               Conread position:597-848
               
               
               Cow position:chr26:12155241-12154997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):28, 87

               
               
               Conread position:597-949
               
               
               Cow position:chr26:13979252-13978907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):29, 101

               
               
               Conread position:597-959
               
               
               Cow position:chr26:6029896-6029546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):90, 26

               
               
               Conread position:598-877
               
               
               Cow position:chr26:29326608-29326880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):18, 75

               
               
               Conread position:598-937
               
               
               Cow position:chr26:12893542-12893218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 28

               
               
               Conread position:599-949
               
               
               Cow position:chr26:26200721-26201062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):27, 67

               
               
               Conread position:602-805
               
               
               Cow position:chr26:6486772-6486568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):133, 174

               
               
               Conread position:602-959
               
               
               Cow position:chr26:32834691-32834338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:246
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):270, 83

               
               
               Conread position:603-909
               
               
               Cow position:chr26:6188180-6188482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):82, 21

               
               
               Conread position:604-941
               
               
               Cow position:chr26:6037551-6037206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:238
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):120, 93

               
               
               Conread position:604-941
               
               
               Cow position:chr26:8306281-8306614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):73, 9

               
               
               Conread position:604-959
               
               
               Cow position:chr26:3757679-3758023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:237
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):120, 32

               
               
               Conread position:607-941
               
               
               Cow position:chr26:31137561-31137250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):214, 16

               
               
               Conread position:607-958
               
               
               Cow position:chr26:32670603-32670276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):249, 16

               
               
               Conread position:608-951
               
               
               Cow position:chr26:23671302-23671644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:228
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):114, 99

               
               
               Conread position:608-951
               
               
               Cow position:chr26:24240565-24240905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 16

               
               
               Conread position:611-960
               
               
               Cow position:chr26:34724983-34724640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:238
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):88, 12

               
               
               Conread position:612-766
               
               
               Cow position:chr26:5750267-5750115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):64, 58

               
               
               Conread position:612-819
               
               
               Cow position:chr26:32832080-32832281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):90, 11

               
               
               Conread position:612-941
               
               
               Cow position:chr26:32565909-32566225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):118, 11

               
               
               Conread position:612-949
               
               
               Cow position:chr26:23001148-23000814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):14, 85

               
               
               Conread position:613-955
               
               
               Cow position:chr26:3559322-3558977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):84, 21

               
               
               Conread position:618-875
               
               
               Cow position:chr26:6864914-6865180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):86, 165

               
               
               Conread position:618-959
               
               
               Cow position:chr26:4807460-4807790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:619-842
               
               
               Cow position:chr26:32955733-32955510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):150, 105

               
               
               Conread position:620-941
               
               
               Cow position:chr26:4513662-4513356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:621-944
               
               
               Cow position:chr26:31854133-31854451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):56, 49

               
               
               Conread position:622-941
               
               
               Cow position:chr26:35686301-35686610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):144, 16

               
               
               Conread position:622-954
               
               
               Cow position:chr26:678076-677732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):100, 7

               
               
               Conread position:623-937
               
               
               Cow position:chr26:7687337-7687031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):211, 86

               
               
               Conread position:624-949
               
               
               Cow position:chr26:11964027-11964339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):215, 72

               
               
               Conread position:626-949
               
               
               Cow position:chr26:30861840-30861525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):100, 67

               
               
               Conread position:627-875
               
               
               Cow position:chr26:32836148-32836389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):97, 79

               
               
               Conread position:627-949
               
               
               Cow position:chr26:26322100-26322413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:628-930
               
               
               Cow position:chr26:29889589-29889310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):279, 35

               
               
               Conread position:629-957
               
               
               Cow position:chr26:6514751-6515068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):311, 73

               
               
               Conread position:631-820
               
               
               Cow position:chr26:26928-26741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):71, 82

               
               
               Conread position:631-951
               
               
               Cow position:chr26:11538444-11538762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):99, 8

               
               
               Conread position:632-941
               
               
               Cow position:chr26:32815880-32815573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:212
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):89, 82

               
               
               Conread position:636-948
               
               
               Cow position:chr26:3706711-3707022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):224, 81

               
               
               Conread position:645-951
               
               
               Cow position:chr26:19591405-19591702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):7, 54

               
               
               Conread position:650-941
               
               
               Cow position:chr26:23924777-23925059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):55, 45

               
               
               Conread position:654-948
               
               
               Cow position:chr26:33475625-33475922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):75, 13

               
               
               Conread position:654-959
               
               
               Cow position:chr26:23111976-23112275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):67, 36

               
               
               Conread position:656-951
               
               
               Cow position:chr26:20825173-20824898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:657-948
               
               
               Cow position:chr26:218520-218234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):73, 39

               
               
               Conread position:658-951
               
               
               Cow position:chr26:22033420-22033706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):65, 56

               
               
               Conread position:664-959
               
               
               Cow position:chr26:33392336-33392632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):18, 39

               
               
               Conread position:670-944
               
               
               Cow position:chr26:5836870-5836600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:670-958
               
               
               Cow position:chr26:5168342-5168625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):49, 105

               
               
               Conread position:672-949
               
               
               Cow position:chr26:25663587-25663325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:673-951
               
               
               Cow position:chr26:28423239-28423511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:186
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:674-956
               
               
               Cow position:chr26:23624091-23623813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):20, 11

               
               
               Conread position:676-934
               
               
               Cow position:chr26:10145857-10146105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):47, 26

               
               
               Conread position:679-949
               
               
               Cow position:chr26:18763780-18763515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):27, 18

               
               
               Conread position:679-960
               
               
               Cow position:chr26:32830042-32830320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):264, 27

               
               
               Conread position:681-941
               
               
               Cow position:chr26:19636251-19636505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):42, 28

               
               
               Conread position:681-941
               
               
               Cow position:chr26:30284250-30283991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):36, 22

               
               
               Conread position:687-937
               
               
               Cow position:chr26:34560203-34559960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):36, 19

               
               
               Conread position:691-949
               
               
               Cow position:chr26:9099561-9099310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:692-959
               
               
               Cow position:chr26:34580775-34581046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):12, 17

               
               
               Conread position:695-944
               
               
               Cow position:chr26:18872580-18872831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:699-959
               
               
               Cow position:chr26:12940377-12940638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):24, 16

               
               
               Conread position:702-947
               
               
               Cow position:chr26:17212163-17212418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):7, 161

               
               
               Conread position:709-941
               
               
               Cow position:chr26:7314608-7314844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:709-945
               
               
               Cow position:chr26:11672283-11672520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:709-947
               
               
               Cow position:chr26:29664171-29663932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):83, 13

               
               
               Conread position:709-959
               
               
               Cow position:chr26:34611195-34610953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):13, 138

               
               
               Conread position:710-874
               
               
               Cow position:chr26:33241877-33242041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):13, 5

               
               
               Conread position:710-951
               
               
               Cow position:chr26:11875233-11874999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):147, 0

               
               
               Conread position:711-937
               
               
               Cow position:chr26:16435668-16435439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):20, 212

               
               
               Conread position:721-938
               
               
               Cow position:chr26:31173271-31173485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:721-955
               
               
               Cow position:chr26:25225734-25225499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):110, 100

               
               
               Conread position:722-937
               
               
               Cow position:chr26:19671478-19671689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:726-933
               
               
               Cow position:chr26:9501713-9501917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):29, 42

               
               
               Conread position:729-955
               
               
               Cow position:chr26:10933426-10933196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):105, 96

               
               
               Conread position:730-949
               
               
               Cow position:chr26:16233681-16233462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:733-949
               
               
               Cow position:chr26:27847031-27847247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:739-960
               
               
               Cow position:chr26:33038206-33037991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:740-942
               
               
               Cow position:chr26:13863016-13862822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:742-947
               
               
               Cow position:chr26:28202739-28202534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):21, 30

               
               
               Conread position:742-949
               
               
               Cow position:chr26:9596083-9595876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):92, 83

               
               
               Conread position:742-958
               
               
               Cow position:chr26:12028219-12027999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):23, 112

               
               
               Conread position:745-941
               
               
               Cow position:chr26:15132660-15132856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):81, 89

               
               
               Conread position:747-950
               
               
               Cow position:chr26:32981449-32981246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):105, 113

               
               
               Conread position:750-930
               
               
               Cow position:chr26:28243857-28244036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:757-941
               
               
               Cow position:chr26:13705742-13705553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):116, 80

               
               
               Conread position:758-951
               
               
               Cow position:chr26:8811508-8811701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):181, 30

               
               
               Conread position:773-941
               
               
               Cow position:chr26:31382371-31382530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:773-949
               
               
               Cow position:chr26:16166644-16166470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:773-949
               
               
               Cow position:chr26:21279910-21279738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):88, 45

               
               
               Conread position:773-949
               
               
               Cow position:chr26:31712017-31711841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:773-952
               
               
               Cow position:chr26:6823210-6823383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:773-959
               
               
               Cow position:chr26:12807249-12807071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):176, 62

               
               
               Conread position:773-959
               
               
               Cow position:chr26:27768318-27768501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:774-924
               
               
               Cow position:chr26:29897239-29897382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:774-939
               
               
               Cow position:chr26:26245118-26244955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:774-941
               
               
               Cow position:chr26:21822993-21822832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:774-943
               
               
               Cow position:chr26:22799104-22798936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:774-949
               
               
               Cow position:chr26:27482514-27482339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:774-959
               
               
               Cow position:chr26:5832988-5833171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):133, 8

               
               
               Conread position:774-960
               
               
               Cow position:chr26:17398628-17398811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):168, 121

               
               
               Conread position:775-941
               
               
               Cow position:chr26:754858-754694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):66, 81

               
               
               Conread position:775-947
               
               
               Cow position:chr26:5407032-5407201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:775-949
               
               
               Cow position:chr26:16801033-16801208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):49, 26

               
               
               Conread position:775-949
               
               
               Cow position:chr26:23481197-23481028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:775-959
               
               
               Cow position:chr26:2930206-2930018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:775-959
               
               
               Cow position:chr26:3930481-3930296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):167, 0

               
               
               Conread position:780-941
               
               
               Cow position:chr26:28773-28618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:780-941
               
               
               Cow position:chr26:1041057-1041218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:780-951
               
               
               Cow position:chr26:4644079-4643908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):81, 7

               
               
               Conread position:782-945
               
               
               Cow position:chr26:34114322-34114484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:782-951
               
               
               Cow position:chr26:28444835-28444666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):123, 127

               
               
               Conread position:782-958
               
               
               Cow position:chr26:24988426-24988249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):173, 0

               
               
               Conread position:784-948
               
               
               Cow position:chr26:10220166-10220000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):72, 117

               
               
               Conread position:784-959
               
               
               Cow position:chr26:19145961-19146137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:784-959
               
               
               Cow position:chr26:21320008-21320180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):158, 71

               
               
               Conread position:787-938
               
               
               Cow position:chr26:9662167-9662016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:787-940
               
               
               Cow position:chr26:31888797-31888944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:787-941
               
               
               Cow position:chr26:25029598-25029752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:787-959
               
               
               Cow position:chr26:12891906-12891739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):129, 63

               
               
               Conread position:789-941
               
               
               Cow position:chr26:18679317-18679462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:790-941
               
               
               Cow position:chr26:135626-135476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:791-941
               
               
               Cow position:chr26:35677910-35678064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:791-949
               
               
               Cow position:chr26:35530315-35530472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:791-958
               
               
               Cow position:chr26:32842718-32842550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):67, 32

               
               
               Conread position:817-960
               
               
               Cow position:chr26:26919628-26919770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:552-751
               
               
               Cow position:chr27:29236724-29236522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):34, 75

               
               
               Conread position:552-949
               
               
               Cow position:chr27:21408409-21408821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:264
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):41, 171

               
               
               Conread position:558-768
               
               
               Cow position:chr27:7537938-7538150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):43, 14

               
               
               Conread position:565-951
               
               
               Cow position:chr27:10307169-10307557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 103

               
               
               Conread position:566-766
               
               
               Cow position:chr27:27040737-27040531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:566-855
               
               
               Cow position:chr27:8263210-8263498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):53, 5

               
               
               Conread position:567-960
               
               
               Cow position:chr27:20636942-20637320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:262
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):10, 22

               
               
               Conread position:569-799
               
               
               Cow position:chr27:20789253-20789483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):23, 55

               
               
               Conread position:569-855
               
               
               Cow position:chr27:27270412-27270701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):24, 100

               
               
               Conread position:569-940
               
               
               Cow position:chr27:19718046-19717656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:263
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):23, 55

               
               
               Conread position:569-941
               
               
               Cow position:chr27:10582489-10582128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:244
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):19, 94

               
               
               Conread position:569-947
               
               
               Cow position:chr27:26481086-26481446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:257
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):43, 19

               
               
               Conread position:570-820
               
               
               Cow position:chr27:29399940-29399701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):25, 136

               
               
               Conread position:572-875
               
               
               Cow position:chr27:30359525-30359227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:206
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):20, 54

               
               
               Conread position:572-935
               
               
               Cow position:chr27:19661058-19660690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 19

               
               
               Conread position:572-951
               
               
               Cow position:chr27:28001692-28002057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 16

               
               
               Conread position:574-820
               
               
               Cow position:chr27:30672446-30672683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:574-927
               
               
               Cow position:chr27:19685593-19685939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:235
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):147, 50

               
               
               Conread position:574-929
               
               
               Cow position:chr27:26424465-26424807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):31, 52

               
               
               Conread position:574-948
               
               
               Cow position:chr27:15867517-15867143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 113

               
               
               Conread position:574-948
               
               
               Cow position:chr27:20078984-20078615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:252
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):52, 11

               
               
               Conread position:574-950
               
               
               Cow position:chr27:30765157-30764780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 205

               
               
               Conread position:574-959
               
               
               Cow position:chr27:6550576-6550196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 50

               
               
               Conread position:576-859
               
               
               Cow position:chr27:8353590-8353314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):16, 48

               
               
               Conread position:576-944
               
               
               Cow position:chr27:22549671-22550016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):231, 15

               
               
               Conread position:576-959
               
               
               Cow position:chr27:19668679-19669066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:259
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):51, 13

               
               
               Conread position:577-752
               
               
               Cow position:chr27:4011795-4011622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):15, 127

               
               
               Conread position:577-842
               
               
               Cow position:chr27:24014624-24014886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):15, 47

               
               
               Conread position:577-844
               
               
               Cow position:chr27:9169528-9169787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):15, 130

               
               
               Conread position:577-875
               
               
               Cow position:chr27:30988914-30988618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):22, 149

               
               
               Conread position:577-879
               
               
               Cow position:chr27:28271030-28271334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):15, 137

               
               
               Conread position:577-880
               
               
               Cow position:chr27:1290748-1291033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):82, 14

               
               
               Conread position:577-924
               
               
               Cow position:chr27:26239141-26238798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):15, 48

               
               
               Conread position:577-944
               
               
               Cow position:chr27:11480513-11480884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 306

               
               
               Conread position:577-951
               
               
               Cow position:chr27:18544114-18543734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:263
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):42, 150

               
               
               Conread position:577-958
               
               
               Cow position:chr27:23632714-23632350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:258
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):9, 76

               
               
               Conread position:577-959
               
               
               Cow position:chr27:13252122-13251768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:258
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):15, 36

               
               
               Conread position:577-959
               
               
               Cow position:chr27:27003160-27003526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:269
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):15, 48

               
               
               Conread position:578-875
               
               
               Cow position:chr27:22454662-22454956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:211
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):9, 48

               
               
               Conread position:578-951
               
               
               Cow position:chr27:26226175-26226543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 30

               
               
               Conread position:579-937
               
               
               Cow position:chr27:19546393-19546760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:246
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):87, 45

               
               
               Conread position:579-949
               
               
               Cow position:chr27:18558470-18558107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 8

               
               
               Conread position:580-842
               
               
               Cow position:chr27:26135250-26135005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):12, 21

               
               
               Conread position:580-951
               
               
               Cow position:chr27:7935044-7935408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:256
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):39, 16

               
               
               Conread position:581-766
               
               
               Cow position:chr27:2683031-2683216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):39, 126

               
               
               Conread position:581-820
               
               
               Cow position:chr27:27843884-27844127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:581-842
               
               
               Cow position:chr27:26151132-26150871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):135, 42

               
               
               Conread position:581-866
               
               
               Cow position:chr27:26218818-26218537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):98, 89

               
               
               Conread position:581-875
               
               
               Cow position:chr27:4385952-4386241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):149, 16

               
               
               Conread position:581-875
               
               
               Cow position:chr27:16589604-16589882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):141, 43

               
               
               Conread position:581-878
               
               
               Cow position:chr27:10992466-10992167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):11, 66

               
               
               Conread position:581-937
               
               
               Cow position:chr27:26643791-26643464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):18, 44

               
               
               Conread position:581-941
               
               
               Cow position:chr27:27388912-27389270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):7, 29

               
               
               Conread position:581-944
               
               
               Cow position:chr27:4390146-4390503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:250
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):128, 43

               
               
               Conread position:581-944
               
               
               Cow position:chr27:19496987-19496633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):11, 104

               
               
               Conread position:581-945
               
               
               Cow position:chr27:28496266-28496617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):6, 40

               
               
               Conread position:581-947
               
               
               Cow position:chr27:24227681-24228055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:251
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):11, 92

               
               
               Conread position:581-959
               
               
               Cow position:chr27:27554571-27554943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:258
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):93, 88

               
               
               Conread position:583-959
               
               
               Cow position:chr27:17994832-17995202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 124

               
               
               Conread position:585-938
               
               
               Cow position:chr27:299280-299614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):145, 33

               
               
               Conread position:585-941
               
               
               Cow position:chr27:22440244-22439894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):89, 64

               
               
               Conread position:585-942
               
               
               Cow position:chr27:26999312-26999667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:251
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):67, 58

               
               
               Conread position:585-950
               
               
               Cow position:chr27:27136412-27136792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:252
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):137, 38

               
               
               Conread position:585-958
               
               
               Cow position:chr27:26509053-26509417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):363, 103

               
               
               Conread position:587-949
               
               
               Cow position:chr27:6925195-6924831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 38

               
               
               Conread position:589-949
               
               
               Cow position:chr27:15925447-15925090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:242
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):32, 82

               
               
               Conread position:591-700
               
               
               Cow position:chr27:23455049-23455162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:93
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-706
               
               
               Cow position:chr27:27259710-27259598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:92
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:591-730
               
               
               Cow position:chr27:20592085-20591945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):29, 125

               
               
               Conread position:591-748
               
               
               Cow position:chr27:10395157-10395312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):39, 27

               
               
               Conread position:591-753
               
               
               Cow position:chr27:22268602-22268443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):135, 33

               
               
               Conread position:591-761
               
               
               Cow position:chr27:14902551-14902719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):102, 16

               
               
               Conread position:591-766
               
               
               Cow position:chr27:26141873-26141699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):114, 118

               
               
               Conread position:591-805
               
               
               Cow position:chr27:12429504-12429297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):35, 81

               
               
               Conread position:591-807
               
               
               Cow position:chr27:20918990-20918779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):35, 72

               
               
               Conread position:591-819
               
               
               Cow position:chr27:1498418-1498192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):119, 32

               
               
               Conread position:591-820
               
               
               Cow position:chr27:4812779-4813008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):83, 32

               
               
               Conread position:591-830
               
               
               Cow position:chr27:16625998-16625765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):131, 17

               
               
               Conread position:591-839
               
               
               Cow position:chr27:715604-715357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):124, 97

               
               
               Conread position:591-840
               
               
               Cow position:chr27:29504546-29504794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):111, 32

               
               
               Conread position:591-842
               
               
               Cow position:chr27:18593368-18593126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-842
               
               
               Cow position:chr27:30354242-30354491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-855
               
               
               Cow position:chr27:4673120-4672852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-857
               
               
               Cow position:chr27:23882276-23882529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:591-862
               
               
               Cow position:chr27:20641240-20641501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):257, 27

               
               
               Conread position:591-863
               
               
               Cow position:chr27:26581334-26581604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):75, 34

               
               
               Conread position:591-877
               
               
               Cow position:chr27:29380964-29380673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:216
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):17, 127

               
               
               Conread position:591-883
               
               
               Cow position:chr27:20497315-20497018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:591-890
               
               
               Cow position:chr27:13274053-13274356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):198, 113

               
               
               Conread position:591-922
               
               
               Cow position:chr27:22426727-22427059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):34, 81

               
               
               Conread position:591-924
               
               
               Cow position:chr27:1768526-1768843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:235
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):108, 29

               
               
               Conread position:591-929
               
               
               Cow position:chr27:23554223-23554560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 120

               
               
               Conread position:591-929
               
               
               Cow position:chr27:28245902-28245550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):176, 111

               
               
               Conread position:591-930
               
               
               Cow position:chr27:27442069-27442392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:235
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):28, 84

               
               
               Conread position:591-933
               
               
               Cow position:chr27:15408942-15409260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-933
               
               
               Cow position:chr27:16705348-16705018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:239
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):178, 57

               
               
               Conread position:591-934
               
               
               Cow position:chr27:7731147-7731510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:239
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-934
               
               
               Cow position:chr27:26865019-26865344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-937
               
               
               Cow position:chr27:3306871-3306547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):57, 20

               
               
               Conread position:591-937
               
               
               Cow position:chr27:12596866-12596543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):149, 37

               
               
               Conread position:591-937
               
               
               Cow position:chr27:22220651-22220311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):132, 29

               
               
               Conread position:591-937
               
               
               Cow position:chr27:29493811-29494137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:228
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-939
               
               
               Cow position:chr27:30582841-30582499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):95, 118

               
               
               Conread position:591-940
               
               
               Cow position:chr27:22386971-22386646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:238
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-940
               
               
               Cow position:chr27:28018434-28018081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):216, 21

               
               
               Conread position:591-941
               
               
               Cow position:chr27:6500162-6499815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 105

               
               
               Conread position:591-941
               
               
               Cow position:chr27:7412480-7412150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):341, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr27:7649487-7649834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:252
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):36, 46

               
               
               Conread position:591-941
               
               
               Cow position:chr27:8629772-8630117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):52, 33

               
               
               Conread position:591-941
               
               
               Cow position:chr27:10979961-10979617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 52

               
               
               Conread position:591-941
               
               
               Cow position:chr27:17397349-17397694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 267

               
               
               Conread position:591-941
               
               
               Cow position:chr27:22171401-22171059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 35

               
               
               Conread position:591-941
               
               
               Cow position:chr27:22547307-22547631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-941
               
               
               Cow position:chr27:23545219-23545581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):34, 104

               
               
               Conread position:591-941
               
               
               Cow position:chr27:25809414-25809759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:245
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):33, 84

               
               
               Conread position:591-941
               
               
               Cow position:chr27:28931690-28932045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 109

               
               
               Conread position:591-941
               
               
               Cow position:chr27:30814515-30814174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):111, 34

               
               
               Conread position:591-941
               
               
               Cow position:chr27:30868641-30868994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 45

               
               
               Conread position:591-944
               
               
               Cow position:chr27:7614987-7615315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:235
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):139, 106

               
               
               Conread position:591-944
               
               
               Cow position:chr27:12516296-12515948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:247
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):35, 95

               
               
               Conread position:591-945
               
               
               Cow position:chr27:31372878-31373219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:245
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):42, 15

               
               
               Conread position:591-947
               
               
               Cow position:chr27:27632509-27632842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:239
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:591-948
               
               
               Cow position:chr27:13841474-13841114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):35, 54

               
               
               Conread position:591-949
               
               
               Cow position:chr27:6541730-6541384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-949
               
               
               Cow position:chr27:13638891-13639238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:244
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):31, 54

               
               
               Conread position:591-949
               
               
               Cow position:chr27:14670283-14670632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:252
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):77, 32

               
               
               Conread position:591-949
               
               
               Cow position:chr27:18030959-18031321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:247
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):36, 214

               
               
               Conread position:591-949
               
               
               Cow position:chr27:23128561-23128214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:253
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):34, 121

               
               
               Conread position:591-949
               
               
               Cow position:chr27:30260791-30261146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:217
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):164, 65

               
               
               Conread position:591-949
               
               
               Cow position:chr27:30871958-30872308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 75

               
               
               Conread position:591-951
               
               
               Cow position:chr27:8168328-8168673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:253
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):45, 106

               
               
               Conread position:591-951
               
               
               Cow position:chr27:20045987-20045643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:254
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):35, 80

               
               
               Conread position:591-951
               
               
               Cow position:chr27:24477514-24477172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:237
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):177, 36

               
               
               Conread position:591-956
               
               
               Cow position:chr27:23594417-23594062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 32

               
               
               Conread position:591-958
               
               
               Cow position:chr27:27020001-27020354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 135

               
               
               Conread position:591-958
               
               
               Cow position:chr27:30890388-30890043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:257
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-959
               
               
               Cow position:chr27:815467-815073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:264
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):156, 32

               
               
               Conread position:591-959
               
               
               Cow position:chr27:1353691-1353319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 343

               
               
               Conread position:591-959
               
               
               Cow position:chr27:11435220-11435587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 79

               
               
               Conread position:591-959
               
               
               Cow position:chr27:15866325-15865968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:248
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):28, 126

               
               
               Conread position:591-959
               
               
               Cow position:chr27:26428031-26428387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):131, 102

               
               
               Conread position:591-959
               
               
               Cow position:chr27:27438403-27438769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 108

               
               
               Conread position:591-960
               
               
               Cow position:chr27:21991257-21990880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:244
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):38, 116

               
               
               Conread position:592-751
               
               
               Cow position:chr27:20570222-20570064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):24, 118

               
               
               Conread position:592-753
               
               
               Cow position:chr27:16238005-16237851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):130, 32

               
               
               Conread position:592-798
               
               
               Cow position:chr27:19647839-19648045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):95, 32

               
               
               Conread position:592-803
               
               
               Cow position:chr27:21350919-21351129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):48, 104

               
               
               Conread position:592-806
               
               
               Cow position:chr27:11081297-11081090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):34, 116

               
               
               Conread position:592-819
               
               
               Cow position:chr27:4858546-4858763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):105, 31

               
               
               Conread position:592-842
               
               
               Cow position:chr27:1123131-1122885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:592-897
               
               
               Cow position:chr27:22418668-22418963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):110, 17

               
               
               Conread position:592-927
               
               
               Cow position:chr27:27694672-27695004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:592-929
               
               
               Cow position:chr27:22735502-22735825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):34, 53

               
               
               Conread position:592-933
               
               
               Cow position:chr27:18739488-18739139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:239
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:592-935
               
               
               Cow position:chr27:435335-434993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):60, 31

               
               
               Conread position:592-941
               
               
               Cow position:chr27:7346764-7346427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:230
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):301, 43

               
               
               Conread position:592-941
               
               
               Cow position:chr27:11151776-11151427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:245
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):37, 117

               
               
               Conread position:592-949
               
               
               Cow position:chr27:13875831-13875482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 32

               
               
               Conread position:592-949
               
               
               Cow position:chr27:15871263-15870908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):34, 107

               
               
               Conread position:592-951
               
               
               Cow position:chr27:6788056-6787699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):132, 114

               
               
               Conread position:592-957
               
               
               Cow position:chr27:17331599-17331230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:252
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):131, 31

               
               
               Conread position:592-958
               
               
               Cow position:chr27:15668670-15669034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 31

               
               
               Conread position:592-960
               
               
               Cow position:chr27:17472913-17472549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 121

               
               
               Conread position:593-742
               
               
               Cow position:chr27:30843976-30844125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):104, 64

               
               
               Conread position:593-754
               
               
               Cow position:chr27:1183778-1183943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):34, 51

               
               
               Conread position:593-767
               
               
               Cow position:chr27:6523142-6522972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):46, 110

               
               
               Conread position:593-809
               
               
               Cow position:chr27:25380092-25379874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):129, 31

               
               
               Conread position:593-859
               
               
               Cow position:chr27:26413154-26413418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:192
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):129, 31

               
               
               Conread position:593-863
               
               
               Cow position:chr27:12246756-12246487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):120, 31

               
               
               Conread position:593-874
               
               
               Cow position:chr27:27640896-27641189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:213
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):34, 214

               
               
               Conread position:593-875
               
               
               Cow position:chr27:15643271-15642995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):129, 109

               
               
               Conread position:593-918
               
               
               Cow position:chr27:11536001-11536327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):33, 49

               
               
               Conread position:593-925
               
               
               Cow position:chr27:23891040-23890706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 124

               
               
               Conread position:593-929
               
               
               Cow position:chr27:26489806-26490136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):123, 30

               
               
               Conread position:593-939
               
               
               Cow position:chr27:24331824-24331473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:246
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):28, 114

               
               
               Conread position:593-939
               
               
               Cow position:chr27:27460476-27460819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):88, 30

               
               
               Conread position:593-940
               
               
               Cow position:chr27:27245254-27245604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:230
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):225, 30

               
               
               Conread position:593-941
               
               
               Cow position:chr27:20354683-20354357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:593-943
               
               
               Cow position:chr27:22603270-22602929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:245
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):240, 64

               
               
               Conread position:593-944
               
               
               Cow position:chr27:16786922-16786585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:237
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:593-945
               
               
               Cow position:chr27:29816524-29816876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:244
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):29, 34

               
               
               Conread position:593-949
               
               
               Cow position:chr27:30915105-30914756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 32

               
               
               Conread position:593-950
               
               
               Cow position:chr27:2592648-2592284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:593-950
               
               
               Cow position:chr27:20748910-20749255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:235
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):111, 18

               
               
               Conread position:593-951
               
               
               Cow position:chr27:16284568-16284235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):128, 30

               
               
               Conread position:593-951
               
               
               Cow position:chr27:28518389-28518043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 53

               
               
               Conread position:593-956
               
               
               Cow position:chr27:29831588-29831963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:266
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):31, 126

               
               
               Conread position:593-959
               
               
               Cow position:chr27:20828613-20828965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):130, 32

               
               
               Conread position:593-960
               
               
               Cow position:chr27:19388113-19387761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:593-960
               
               
               Cow position:chr27:28921799-28922157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 33

               
               
               Conread position:594-895
               
               
               Cow position:chr27:26807465-26807756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:205
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):166, 30

               
               
               Conread position:594-928
               
               
               Cow position:chr27:26188919-26188597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:236
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):109, 5

               
               
               Conread position:595-864
               
               
               Cow position:chr27:31148858-31148593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):127, 28

               
               
               Conread position:595-941
               
               
               Cow position:chr27:427066-426727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 28

               
               
               Conread position:595-951
               
               
               Cow position:chr27:29184742-29185098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:246
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):109, 7

               
               
               Conread position:595-959
               
               
               Cow position:chr27:23930069-23929718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:247
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):127, 12

               
               
               Conread position:596-728
               
               
               Cow position:chr27:20118502-20118374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:596-732
               
               
               Cow position:chr27:27550648-27550777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:596-750
               
               
               Cow position:chr27:26398163-26398313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):126, 28

               
               
               Conread position:596-753
               
               
               Cow position:chr27:31159900-31159742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):27, 75

               
               
               Conread position:596-848
               
               
               Cow position:chr27:20553816-20553579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:596-867
               
               
               Cow position:chr27:25277237-25276972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):32, 71

               
               
               Conread position:596-910
               
               
               Cow position:chr27:24940006-24939683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):25, 272

               
               
               Conread position:596-939
               
               
               Cow position:chr27:22559725-22560067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:239
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):23, 181

               
               
               Conread position:596-941
               
               
               Cow position:chr27:15454307-15453970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 27

               
               
               Conread position:596-941
               
               
               Cow position:chr27:16103903-16103568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 33

               
               
               Conread position:596-948
               
               
               Cow position:chr27:23736058-23735720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:231
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):26, 100

               
               
               Conread position:596-951
               
               
               Cow position:chr27:29693566-29693213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:243
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):38, 112

               
               
               Conread position:596-955
               
               
               Cow position:chr27:30406941-30407304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):127, 27

               
               
               Conread position:596-959
               
               
               Cow position:chr27:22035281-22035635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:254
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):115, 27

               
               
               Conread position:597-695
               
               
               Cow position:chr27:673949-674047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:83
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:597-847
               
               
               Cow position:chr27:20092743-20092986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):104, 26

               
               
               Conread position:597-877
               
               
               Cow position:chr27:23483320-23483044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):110, 26

               
               
               Conread position:597-950
               
               
               Cow position:chr27:16275576-16275934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:259
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):77, 11

               
               
               Conread position:597-951
               
               
               Cow position:chr27:29431552-29431222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):133, 26

               
               
               Conread position:598-824
               
               
               Cow position:chr27:29312579-29312803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):123, 24

               
               
               Conread position:598-941
               
               
               Cow position:chr27:23511084-23510732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:242
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):115, 25

               
               
               Conread position:598-941
               
               
               Cow position:chr27:28896969-28896633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):10, 29

               
               
               Conread position:598-950
               
               
               Cow position:chr27:15315603-15315271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:248
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):15, 102

               
               
               Conread position:600-938
               
               
               Cow position:chr27:18646053-18646389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:239
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:600-941
               
               
               Cow position:chr27:23917944-23918277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):102, 46

               
               
               Conread position:602-848
               
               
               Cow position:chr27:30389206-30389450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):111, 9

               
               
               Conread position:602-927
               
               
               Cow position:chr27:29086023-29086345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):153, 48

               
               
               Conread position:602-936
               
               
               Cow position:chr27:15865696-15865372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 25

               
               
               Conread position:602-937
               
               
               Cow position:chr27:20101457-20101128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):128, 37

               
               
               Conread position:603-928
               
               
               Cow position:chr27:13317869-13318207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:231
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:604-955
               
               
               Cow position:chr27:7971658-7971304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):106, 184

               
               
               Conread position:604-958
               
               
               Cow position:chr27:16780956-16780595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:252
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):119, 19

               
               
               Conread position:604-959
               
               
               Cow position:chr27:19500146-19500497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 102

               
               
               Conread position:605-956
               
               
               Cow position:chr27:8942595-8942950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):147, 116

               
               
               Conread position:607-957
               
               
               Cow position:chr27:14893738-14894088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:222
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):226, 102

               
               
               Conread position:612-855
               
               
               Cow position:chr27:27038759-27038997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):95, 58

               
               
               Conread position:614-941
               
               
               Cow position:chr27:590687-591011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:232
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):9, 35

               
               
               Conread position:615-750
               
               
               Cow position:chr27:26979630-26979767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:617-937
               
               
               Cow position:chr27:23582938-23582635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):272, 8

               
               
               Conread position:618-950
               
               
               Cow position:chr27:16965648-16965323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 72

               
               
               Conread position:618-957
               
               
               Cow position:chr27:16088884-16088527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:244
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):108, 97

               
               
               Conread position:619-860
               
               
               Cow position:chr27:15215307-15215062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):88, 141

               
               
               Conread position:620-959
               
               
               Cow position:chr27:4944445-4944772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):80, 49

               
               
               Conread position:622-938
               
               
               Cow position:chr27:2901195-2901505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:623-831
               
               
               Cow position:chr27:26013304-26013510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):99, 92

               
               
               Conread position:623-941
               
               
               Cow position:chr27:26433740-26434056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:205
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):100, 72

               
               
               Conread position:623-943
               
               
               Cow position:chr27:23452531-23452218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:227
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):12, 93

               
               
               Conread position:624-847
               
               
               Cow position:chr27:22225526-22225744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):101, 71

               
               
               Conread position:625-940
               
               
               Cow position:chr27:26111841-26112160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 132

               
               
               Conread position:625-959
               
               
               Cow position:chr27:20514889-20514564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):145, 0

               
               
               Conread position:627-875
               
               
               Cow position:chr27:31017768-31018005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:627-888
               
               
               Cow position:chr27:7974240-7973984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):72, 84

               
               
               Conread position:628-929
               
               
               Cow position:chr27:22489343-22489041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:216
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):91, 68

               
               
               Conread position:628-941
               
               
               Cow position:chr27:28280248-28279935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):46, 25

               
               
               Conread position:629-941
               
               
               Cow position:chr27:29164829-29164532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):89, 41

               
               
               Conread position:629-951
               
               
               Cow position:chr27:27405005-27405322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):95, 57

               
               
               Conread position:630-948
               
               
               Cow position:chr27:26984412-26984102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):93, 72

               
               
               Conread position:631-874
               
               
               Cow position:chr27:23876777-23877023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):11, 85

               
               
               Conread position:631-941
               
               
               Cow position:chr27:13869680-13869377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):91, 15

               
               
               Conread position:631-951
               
               
               Cow position:chr27:23485276-23484959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):21, 137

               
               
               Conread position:631-957
               
               
               Cow position:chr27:23559969-23560290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:229
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):100, 16

               
               
               Conread position:631-959
               
               
               Cow position:chr27:8062292-8062614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):304, 56

               
               
               Conread position:631-959
               
               
               Cow position:chr27:18507704-18507386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:231
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):99, 50

               
               
               Conread position:636-959
               
               
               Cow position:chr27:31151434-31151122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):88, 34

               
               
               Conread position:638-959
               
               
               Cow position:chr27:15238800-15238480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):22, 16

               
               
               Conread position:643-959
               
               
               Cow position:chr27:23860219-23859901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:227
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):15, 116

               
               
               Conread position:645-927
               
               
               Cow position:chr27:23107853-23108131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):78, 112

               
               
               Conread position:646-949
               
               
               Cow position:chr27:20869645-20869934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):198, 45

               
               
               Conread position:646-952
               
               
               Cow position:chr27:30885273-30884986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):59, 42

               
               
               Conread position:650-927
               
               
               Cow position:chr27:1190432-1190705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:650-948
               
               
               Cow position:chr27:26852549-26852832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:650-955
               
               
               Cow position:chr27:29593585-29593883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):77, 67

               
               
               Conread position:651-877
               
               
               Cow position:chr27:17918273-17918493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):83, 55

               
               
               Conread position:652-860
               
               
               Cow position:chr27:20803616-20803823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):47, 65

               
               
               Conread position:653-950
               
               
               Cow position:chr27:12459321-12459037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):58, 18

               
               
               Conread position:653-951
               
               
               Cow position:chr27:18882695-18882402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):52, 186

               
               
               Conread position:654-865
               
               
               Cow position:chr27:20812950-20812735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):25, 73

               
               
               Conread position:654-921
               
               
               Cow position:chr27:29613449-29613714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):76, 43

               
               
               Conread position:654-941
               
               
               Cow position:chr27:213003-212708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):55, 108

               
               
               Conread position:654-951
               
               
               Cow position:chr27:5553510-5553218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:218
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):33, 53

               
               
               Conread position:654-959
               
               
               Cow position:chr27:13940520-13940810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:208
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):60, 18

               
               
               Conread position:656-941
               
               
               Cow position:chr27:23507687-23507407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):46, 52

               
               
               Conread position:656-949
               
               
               Cow position:chr27:12425325-12425037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):68, 18

               
               
               Conread position:656-951
               
               
               Cow position:chr27:20517696-20517398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):15, 31

               
               
               Conread position:657-941
               
               
               Cow position:chr27:26853321-26853594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):60, 45

               
               
               Conread position:658-940
               
               
               Cow position:chr27:14303769-14303499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):72, 44

               
               
               Conread position:660-945
               
               
               Cow position:chr27:1636902-1637173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):70, 45

               
               
               Conread position:661-950
               
               
               Cow position:chr27:19933097-19932814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):61, 48

               
               
               Conread position:662-949
               
               
               Cow position:chr27:6290503-6290223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:662-950
               
               
               Cow position:chr27:10436699-10436980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):68, 35

               
               
               Conread position:664-941
               
               
               Cow position:chr27:12564394-12564671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):41, 48

               
               
               Conread position:672-954
               
               
               Cow position:chr27:11561797-11561519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):58, 34

               
               
               Conread position:673-917
               
               
               Cow position:chr27:2885812-2886053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):51, 24

               
               
               Conread position:673-952
               
               
               Cow position:chr27:20584437-20584722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):57, 35

               
               
               Conread position:674-935
               
               
               Cow position:chr27:11993845-11994105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):32, 11

               
               
               Conread position:675-957
               
               
               Cow position:chr27:7343406-7343687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):25, 12

               
               
               Conread position:676-896
               
               
               Cow position:chr27:16230919-16231138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):79, 26

               
               
               Conread position:676-949
               
               
               Cow position:chr27:24007487-24007214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):33, 15

               
               
               Conread position:676-949
               
               
               Cow position:chr27:27558481-27558751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):39, 122

               
               
               Conread position:677-959
               
               
               Cow position:chr27:10599008-10598726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):53, 194

               
               
               Conread position:678-944
               
               
               Cow position:chr27:19509030-19508766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):179, 203

               
               
               Conread position:680-920
               
               
               Cow position:chr27:22552869-22553100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):42, 10

               
               
               Conread position:680-941
               
               
               Cow position:chr27:5545595-5545337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):34, 107

               
               
               Conread position:680-949
               
               
               Cow position:chr27:26437105-26437371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):42, 176

               
               
               Conread position:680-958
               
               
               Cow position:chr27:11982635-11982907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:681-919
               
               
               Cow position:chr27:28478594-28478363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):42, 29

               
               
               Conread position:681-940
               
               
               Cow position:chr27:20897011-20897262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):42, 16

               
               
               Conread position:682-955
               
               
               Cow position:chr27:31210559-31210292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):259, 20

               
               
               Conread position:690-955
               
               
               Cow position:chr27:26883257-26883522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):78, 11

               
               
               Conread position:696-941
               
               
               Cow position:chr27:20719288-20719042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):23, 11

               
               
               Conread position:696-945
               
               
               Cow position:chr27:23994421-23994662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):8, 21

               
               
               Conread position:696-949
               
               
               Cow position:chr27:19681951-19681698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):34, 19

               
               
               Conread position:697-951
               
               
               Cow position:chr27:17933924-17933668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):25, 18

               
               
               Conread position:700-936
               
               
               Cow position:chr27:6106696-6106469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):7, 69

               
               
               Conread position:700-941
               
               
               Cow position:chr27:20327495-20327254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):38, 21

               
               
               Conread position:701-944
               
               
               Cow position:chr27:26793787-26794030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):7, 137

               
               
               Conread position:701-951
               
               
               Cow position:chr27:30455989-30455740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):29, 179

               
               
               Conread position:703-941
               
               
               Cow position:chr27:9977678-9977443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):27, 64

               
               
               Conread position:707-949
               
               
               Cow position:chr27:31386641-31386882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):23, 150

               
               
               Conread position:707-958
               
               
               Cow position:chr27:31170074-31170332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):9, 76

               
               
               Conread position:709-941
               
               
               Cow position:chr27:7304618-7304849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):21, 6

               
               
               Conread position:709-949
               
               
               Cow position:chr27:7802059-7801814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):8, 142

               
               
               Conread position:710-913
               
               
               Cow position:chr27:29603803-29603603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):139, 63

               
               
               Conread position:710-942
               
               
               Cow position:chr27:6319905-6319678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):13, 140

               
               
               Conread position:710-949
               
               
               Cow position:chr27:12658362-12658604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):20, 144

               
               
               Conread position:710-959
               
               
               Cow position:chr27:14818220-14817970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):7, 224

               
               
               Conread position:711-949
               
               
               Cow position:chr27:26245564-26245797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:711-959
               
               
               Cow position:chr27:10323822-10323582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):13, 58

               
               
               Conread position:712-945
               
               
               Cow position:chr27:27055270-27055049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):18, 58

               
               
               Conread position:712-947
               
               
               Cow position:chr27:15002994-15003229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):10, 75

               
               
               Conread position:713-941
               
               
               Cow position:chr27:24693395-24693175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:714-941
               
               
               Cow position:chr27:27740309-27740536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):16, 102

               
               
               Conread position:714-949
               
               
               Cow position:chr27:26121742-26121507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):10, 137

               
               
               Conread position:714-955
               
               
               Cow position:chr27:10404134-10404376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):19, 54

               
               
               Conread position:715-949
               
               
               Cow position:chr27:30414922-30415154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):15, 174

               
               
               Conread position:721-937
               
               
               Cow position:chr27:7425214-7425427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):42, 63

               
               
               Conread position:722-939
               
               
               Cow position:chr27:18435160-18435371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:725-949
               
               
               Cow position:chr27:20653285-20653509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):103, 96

               
               
               Conread position:725-951
               
               
               Cow position:chr27:11323300-11323073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):215, 0

               
               
               Conread position:726-959
               
               
               Cow position:chr27:20486027-20485782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):26, 87

               
               
               Conread position:728-951
               
               
               Cow position:chr27:6330611-6330381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:728-960
               
               
               Cow position:chr27:3518472-3518240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):113, 125

               
               
               Conread position:729-950
               
               
               Cow position:chr27:27648351-27648566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:730-951
               
               
               Cow position:chr27:20612486-20612267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):101, 22

               
               
               Conread position:731-935
               
               
               Cow position:chr27:26323412-26323205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):141, 16

               
               
               Conread position:732-949
               
               
               Cow position:chr27:24223915-24223703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):37, 54

               
               
               Conread position:735-937
               
               
               Cow position:chr27:31248653-31248845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):87, 28

               
               
               Conread position:738-959
               
               
               Cow position:chr27:18791552-18791775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:740-942
               
               
               Cow position:chr27:13204414-13204221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:740-951
               
               
               Cow position:chr27:29614997-29614789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:740-952
               
               
               Cow position:chr27:19576368-19576578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):183, 117

               
               
               Conread position:741-941
               
               
               Cow position:chr27:15237767-15237568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:742-941
               
               
               Cow position:chr27:26118453-26118254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:743-939
               
               
               Cow position:chr27:20325095-20324898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):91, 7

               
               
               Conread position:747-919
               
               
               Cow position:chr27:24709505-24709333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:756-929
               
               
               Cow position:chr27:26909652-26909819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:757-955
               
               
               Cow position:chr27:20266287-20266484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):192, 148

               
               
               Conread position:772-959
               
               
               Cow position:chr27:21419267-21419445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):162, 78

               
               
               Conread position:773-929
               
               
               Cow position:chr27:232476-232320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:773-929
               
               
               Cow position:chr27:23177390-23177543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:773-929
               
               
               Cow position:chr27:29160059-29160215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:773-941
               
               
               Cow position:chr27:26984084-26983920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):21, 85

               
               
               Conread position:773-949
               
               
               Cow position:chr27:24303869-24303692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):100, 136

               
               
               Conread position:773-950
               
               
               Cow position:chr27:17908337-17908510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):167, 35

               
               
               Conread position:773-950
               
               
               Cow position:chr27:30444758-30444926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:773-959
               
               
               Cow position:chr27:21202115-21201929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:774-923
               
               
               Cow position:chr27:23060192-23060341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:774-929
               
               
               Cow position:chr27:30996907-30997060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:774-930
               
               
               Cow position:chr27:23477867-23477716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:774-937
               
               
               Cow position:chr27:21951057-21951219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):124, 83

               
               
               Conread position:774-941
               
               
               Cow position:chr27:178784-178620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:774-941
               
               
               Cow position:chr27:26087237-26087077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:774-941
               
               
               Cow position:chr27:26400800-26400960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:774-941
               
               
               Cow position:chr27:31183497-31183330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):85, 155

               
               
               Conread position:774-949
               
               
               Cow position:chr27:13801733-13801554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):102, 139

               
               
               Conread position:774-951
               
               
               Cow position:chr27:20081207-20081383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):169, 0

               
               
               Conread position:774-952
               
               
               Cow position:chr27:30702117-30701941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:774-954
               
               
               Cow position:chr27:26980041-26980221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):124, 135

               
               
               Conread position:774-956
               
               
               Cow position:chr27:27449964-27450140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:774-960
               
               
               Cow position:chr27:24240280-24240085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):83, 11

               
               
               Conread position:774-960
               
               
               Cow position:chr27:26236247-26236068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:775-949
               
               
               Cow position:chr27:672588-672413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):7, 33

               
               
               Conread position:775-950
               
               
               Cow position:chr27:19557308-19557143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:775-955
               
               
               Cow position:chr27:10581453-10581275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):157, 25

               
               
               Conread position:775-959
               
               
               Cow position:chr27:18873968-18873791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):165, 86

               
               
               Conread position:775-959
               
               
               Cow position:chr27:22583667-22583477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:775-959
               
               
               Cow position:chr27:28015812-28015997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):85, 77

               
               
               Conread position:775-960
               
               
               Cow position:chr27:19452922-19452737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):90, 77

               
               
               Conread position:775-960
               
               
               Cow position:chr27:23232836-23232651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):56, 165

               
               
               Conread position:776-958
               
               
               Cow position:chr27:22748247-22748068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:778-951
               
               
               Cow position:chr27:4486858-4487033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:780-951
               
               
               Cow position:chr27:29183301-29183479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:780-955
               
               
               Cow position:chr27:28254153-28253977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):159, 24

               
               
               Conread position:780-956
               
               
               Cow position:chr27:12947879-12948055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:780-956
               
               
               Cow position:chr27:25000045-25000227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:780-957
               
               
               Cow position:chr27:19779792-19779618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:781-930
               
               
               Cow position:chr27:26317980-26317834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:781-941
               
               
               Cow position:chr27:11208640-11208800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:781-947
               
               
               Cow position:chr27:31157726-31157562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:781-951
               
               
               Cow position:chr27:31498697-31498527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):73, 56

               
               
               Conread position:782-926
               
               
               Cow position:chr27:26625122-26624979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:106
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:782-940
               
               
               Cow position:chr27:29249505-29249344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):68, 112

               
               
               Conread position:782-945
               
               
               Cow position:chr27:9956518-9956681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:782-947
               
               
               Cow position:chr27:19074109-19074272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):62, 36

               
               
               Conread position:782-950
               
               
               Cow position:chr27:9504469-9504301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:782-950
               
               
               Cow position:chr27:23760068-23760229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:782-951
               
               
               Cow position:chr27:19805783-19805949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):62, 28

               
               
               Conread position:782-959
               
               
               Cow position:chr27:29308260-29308081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:782-960
               
               
               Cow position:chr27:18813626-18813807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:783-959
               
               
               Cow position:chr27:11133999-11133825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):166, 74

               
               
               Conread position:783-959
               
               
               Cow position:chr27:11349192-11349022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):162, 69

               
               
               Conread position:784-948
               
               
               Cow position:chr27:20048545-20048386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):156, 75

               
               
               Conread position:784-960
               
               
               Cow position:chr27:18688498-18688670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):154, 0

               
               
               Conread position:785-959
               
               
               Cow position:chr27:29877563-29877738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):154, 0

               
               
               Conread position:787-930
               
               
               Cow position:chr27:26314215-26314357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):96, 50

               
               
               Conread position:787-950
               
               
               Cow position:chr27:21101382-21101544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:788-956
               
               
               Cow position:chr27:21054367-21054199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:790-949
               
               
               Cow position:chr27:13181810-13181653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:790-955
               
               
               Cow position:chr27:22150789-22150950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:791-941
               
               
               Cow position:chr27:26939981-26939835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:791-956
               
               
               Cow position:chr27:3698768-3698934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):153, 84

               
               
               Conread position:792-945
               
               
               Cow position:chr27:27012602-27012448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):147, 0

               
               
               Conread position:795-945
               
               
               Cow position:chr27:26467658-26467808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:795-949
               
               
               Cow position:chr27:30441605-30441451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):47, 114

               
               
               Conread position:799-958
               
               
               Cow position:chr27:24952058-24952213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):146, 67

               
               
               Conread position:802-949
               
               
               Cow position:chr27:19653678-19653828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:811-949
               
               
               Cow position:chr27:29458216-29458079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:817-945
               
               
               Cow position:chr27:14472296-14472424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:97
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:866-959
               
               
               Cow position:chr27:19741559-19741655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:82
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:519-941
               
               
               Cow position:chr28:2774851-2775254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:271
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):41, 150

               
               
               Conread position:549-951
               
               
               Cow position:chr28:4643951-4643556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:271
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):44, 112

               
               
               Conread position:551-753
               
               
               Cow position:chr28:19023962-19024164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):76, 7

               
               
               Conread position:553-752
               
               
               Cow position:chr28:22338813-22339012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):16, 78

               
               
               Conread position:557-959
               
               
               Cow position:chr28:22332366-22332751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:269
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:563-831
               
               
               Cow position:chr28:18186389-18186653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:566-709
               
               
               Cow position:chr28:28076575-28076433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:566-752
               
               
               Cow position:chr28:16253025-16252838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):156, 0

               
               
               Conread position:566-847
               
               
               Cow position:chr28:15044026-15043749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):26, 50

               
               
               Conread position:566-866
               
               
               Cow position:chr28:28163924-28164217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):156, 35

               
               
               Conread position:566-875
               
               
               Cow position:chr28:16109777-16110078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:215
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):156, 80

               
               
               Conread position:566-937
               
               
               Cow position:chr28:13474138-13474499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):328, 40

               
               
               Conread position:566-959
               
               
               Cow position:chr28:13245382-13245786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:269
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):28, 36

               
               
               Conread position:566-959
               
               
               Cow position:chr28:20124618-20125003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 58

               
               
               Conread position:566-959
               
               
               Cow position:chr28:30293757-30293363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:264
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):27, 109

               
               
               Conread position:569-754
               
               
               Cow position:chr28:3474801-3474981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):155, 22

               
               
               Conread position:569-805
               
               
               Cow position:chr28:10529647-10529419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):60, 103

               
               
               Conread position:569-949
               
               
               Cow position:chr28:5817677-5818050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 107

               
               
               Conread position:569-959
               
               
               Cow position:chr28:5199664-5200049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:266
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):186, 19

               
               
               Conread position:569-959
               
               
               Cow position:chr28:26327799-26328184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):18, 43

               
               
               Conread position:574-719
               
               
               Cow position:chr28:2124271-2124416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):52, 11

               
               
               Conread position:574-752
               
               
               Cow position:chr28:22739634-22739810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):23, 135

               
               
               Conread position:574-900
               
               
               Cow position:chr28:23675983-23676302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):18, 50

               
               
               Conread position:574-929
               
               
               Cow position:chr28:25728042-25728390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:240
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):290, 148

               
               
               Conread position:574-941
               
               
               Cow position:chr28:11422968-11422615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:253
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):18, 51

               
               
               Conread position:574-941
               
               
               Cow position:chr28:25701025-25700666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):24, 71

               
               
               Conread position:574-950
               
               
               Cow position:chr28:4090208-4089848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:262
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):24, 53

               
               
               Conread position:575-941
               
               
               Cow position:chr28:26719194-26719534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:243
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):22, 50

               
               
               Conread position:576-736
               
               
               Cow position:chr28:13607736-13607891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):146, 13

               
               
               Conread position:576-775
               
               
               Cow position:chr28:9390516-9390325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):146, 11

               
               
               Conread position:576-875
               
               
               Cow position:chr28:26220101-26220397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):74, 47

               
               
               Conread position:576-945
               
               
               Cow position:chr28:11047439-11047802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):147, 11

               
               
               Conread position:576-955
               
               
               Cow position:chr28:25973382-25973761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:250
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):154, 15

               
               
               Conread position:576-958
               
               
               Cow position:chr28:5931198-5931568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:260
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):20, 11

               
               
               Conread position:577-715
               
               
               Cow position:chr28:26784621-26784481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:577-845
               
               
               Cow position:chr28:14512368-14512644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):17, 50

               
               
               Conread position:577-903
               
               
               Cow position:chr28:26103557-26103864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):51, 67

               
               
               Conread position:577-918
               
               
               Cow position:chr28:4138824-4138486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:243
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):15, 42

               
               
               Conread position:577-935
               
               
               Cow position:chr28:10745057-10745414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 8

               
               
               Conread position:577-941
               
               
               Cow position:chr28:4016384-4016727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:257
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):15, 47

               
               
               Conread position:577-941
               
               
               Cow position:chr28:26340188-26340538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:258
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):49, 8

               
               
               Conread position:577-948
               
               
               Cow position:chr28:1632809-1632435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:250
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):15, 34

               
               
               Conread position:577-949
               
               
               Cow position:chr28:10844964-10845314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:253
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):15, 108

               
               
               Conread position:577-949
               
               
               Cow position:chr28:25727223-25727581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:251
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):11, 86

               
               
               Conread position:577-950
               
               
               Cow position:chr28:8347576-8347947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 138

               
               
               Conread position:577-950
               
               
               Cow position:chr28:19054862-19055230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):49, 71

               
               
               Conread position:577-959
               
               
               Cow position:chr28:9099781-9100150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 70

               
               
               Conread position:579-954
               
               
               Cow position:chr28:10669424-10669806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:257
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):138, 8

               
               
               Conread position:580-719
               
               
               Cow position:chr28:13447547-13447682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:580-941
               
               
               Cow position:chr28:5204042-5204389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:246
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):142, 43

               
               
               Conread position:580-945
               
               
               Cow position:chr28:19262741-19262376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 112

               
               
               Conread position:581-707
               
               
               Cow position:chr28:24996736-24996613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:581-739
               
               
               Cow position:chr28:7590332-7590176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):11, 128

               
               
               Conread position:581-838
               
               
               Cow position:chr28:7416163-7415906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):17, 60

               
               
               Conread position:581-839
               
               
               Cow position:chr28:32365698-32365949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:182
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):138, 6

               
               
               Conread position:581-867
               
               
               Cow position:chr28:25249204-25249487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):11, 50

               
               
               Conread position:581-928
               
               
               Cow position:chr28:26743471-26743822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 7

               
               
               Conread position:581-949
               
               
               Cow position:chr28:9426501-9426140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 63

               
               
               Conread position:581-951
               
               
               Cow position:chr28:21844809-21845165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:581-951
               
               
               Cow position:chr28:24966242-24966605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):142, 42

               
               
               Conread position:581-955
               
               
               Cow position:chr28:4158808-4159186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 43

               
               
               Conread position:581-955
               
               
               Cow position:chr28:24672115-24672487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:248
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):25, 15

               
               
               Conread position:584-941
               
               
               Cow position:chr28:10863928-10863596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):138, 35

               
               
               Conread position:585-794
               
               
               Cow position:chr28:3256652-3256858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:585-831
               
               
               Cow position:chr28:26684971-26685213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):137, 39

               
               
               Conread position:585-854
               
               
               Cow position:chr28:19079990-19079725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):41, 100

               
               
               Conread position:585-941
               
               
               Cow position:chr28:13527058-13527402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):147, 77

               
               
               Conread position:585-951
               
               
               Cow position:chr28:4809652-4809984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):85, 34

               
               
               Conread position:585-951
               
               
               Cow position:chr28:27313890-27313513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:252
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):41, 89

               
               
               Conread position:585-958
               
               
               Cow position:chr28:11829083-11828739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:264
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:587-942
               
               
               Cow position:chr28:8140337-8140689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:245
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):9, 38

               
               
               Conread position:591-704
               
               
               Cow position:chr28:11451603-11451491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:95
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:591-714
               
               
               Cow position:chr28:16243898-16243775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):109, 51

               
               
               Conread position:591-736
               
               
               Cow position:chr28:22170857-22170707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:591-751
               
               
               Cow position:chr28:10478483-10478326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):125, 104

               
               
               Conread position:591-753
               
               
               Cow position:chr28:4022245-4022407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):135, 115

               
               
               Conread position:591-761
               
               
               Cow position:chr28:7608119-7607949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):111, 32

               
               
               Conread position:591-761
               
               
               Cow position:chr28:25459388-25459561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:591-803
               
               
               Cow position:chr28:7549198-7548989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):130, 25

               
               
               Conread position:591-816
               
               
               Cow position:chr28:25283068-25283276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):131, 48

               
               
               Conread position:591-816
               
               
               Cow position:chr28:31987463-31987696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):28, 102

               
               
               Conread position:591-819
               
               
               Cow position:chr28:18354463-18354249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:591-821
               
               
               Cow position:chr28:21380739-21380968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:179
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):111, 33

               
               
               Conread position:591-831
               
               
               Cow position:chr28:4536317-4536557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):131, 28

               
               
               Conread position:591-833
               
               
               Cow position:chr28:13267646-13267888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):118, 181

               
               
               Conread position:591-840
               
               
               Cow position:chr28:2872778-2873025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-842
               
               
               Cow position:chr28:5128865-5128620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):111, 32

               
               
               Conread position:591-842
               
               
               Cow position:chr28:10172549-10172309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:591-842
               
               
               Cow position:chr28:11752280-11752031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):124, 32

               
               
               Conread position:591-854
               
               
               Cow position:chr28:14933826-14934078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:591-862
               
               
               Cow position:chr28:23410465-23410195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):36, 11

               
               
               Conread position:591-866
               
               
               Cow position:chr28:18760186-18759923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):131, 42

               
               
               Conread position:591-868
               
               
               Cow position:chr28:21355087-21355365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:205
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):109, 20

               
               
               Conread position:591-869
               
               
               Cow position:chr28:7865185-7865464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):105, 32

               
               
               Conread position:591-869
               
               
               Cow position:chr28:11786852-11786581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):131, 77

               
               
               Conread position:591-869
               
               
               Cow position:chr28:33051889-33052171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):99, 32

               
               
               Conread position:591-874
               
               
               Cow position:chr28:20313133-20313415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 83

               
               
               Conread position:591-874
               
               
               Cow position:chr28:22321286-22321556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:591-875
               
               
               Cow position:chr28:2752636-2752353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):32, 8

               
               
               Conread position:591-875
               
               
               Cow position:chr28:6971483-6971209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-878
               
               
               Cow position:chr28:25596493-25596772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):109, 28

               
               
               Conread position:591-879
               
               
               Cow position:chr28:12946806-12947094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):35, 83

               
               
               Conread position:591-896
               
               
               Cow position:chr28:16386649-16386360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):34, 114

               
               
               Conread position:591-896
               
               
               Cow position:chr28:26533407-26533705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:201
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):33, 107

               
               
               Conread position:591-912
               
               
               Cow position:chr28:2898856-2899173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):35, 107

               
               
               Conread position:591-914
               
               
               Cow position:chr28:18625087-18625414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):35, 263

               
               
               Conread position:591-918
               
               
               Cow position:chr28:10681961-10681641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):35, 54

               
               
               Conread position:591-918
               
               
               Cow position:chr28:30303333-30303027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:233
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):35, 68

               
               
               Conread position:591-922
               
               
               Cow position:chr28:7512727-7512396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:229
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):125, 113

               
               
               Conread position:591-929
               
               
               Cow position:chr28:3914570-3914897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):9, 184

               
               
               Conread position:591-929
               
               
               Cow position:chr28:21363607-21363932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:591-936
               
               
               Cow position:chr28:19222281-19221938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:247
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):265, 33

               
               
               Conread position:591-937
               
               
               Cow position:chr28:22345880-22346222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:238
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-938
               
               
               Cow position:chr28:12951289-12951617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:243
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:591-939
               
               
               Cow position:chr28:12430468-12430808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:239
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):124, 35

               
               
               Conread position:591-940
               
               
               Cow position:chr28:5224574-5224907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:241
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):27, 42

               
               
               Conread position:591-941
               
               
               Cow position:chr28:3492924-3492583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr28:11426681-11426344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:591-941
               
               
               Cow position:chr28:11884659-11884327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-941
               
               
               Cow position:chr28:16085184-16085523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 81

               
               
               Conread position:591-941
               
               
               Cow position:chr28:21868316-21868661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr28:30746867-30746534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):135, 33

               
               
               Conread position:591-944
               
               
               Cow position:chr28:23460009-23460351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):36, 97

               
               
               Conread position:591-945
               
               
               Cow position:chr28:3024051-3023708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 32

               
               
               Conread position:591-945
               
               
               Cow position:chr28:9285513-9285169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 32

               
               
               Conread position:591-946
               
               
               Cow position:chr28:16211231-16210891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:240
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):335, 32

               
               
               Conread position:591-948
               
               
               Cow position:chr28:28766045-28765693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):126, 115

               
               
               Conread position:591-949
               
               
               Cow position:chr28:4308048-4307681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 126

               
               
               Conread position:591-949
               
               
               Cow position:chr28:7698120-7697767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 119

               
               
               Conread position:591-949
               
               
               Cow position:chr28:10495416-10495088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:591-949
               
               
               Cow position:chr28:15272400-15272058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):35, 54

               
               
               Conread position:591-949
               
               
               Cow position:chr28:22132785-22133120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):22, 16

               
               
               Conread position:591-949
               
               
               Cow position:chr28:24368075-24367729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:243
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):35, 109

               
               
               Conread position:591-950
               
               
               Cow position:chr28:9812144-9812496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:250
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):121, 39

               
               
               Conread position:591-950
               
               
               Cow position:chr28:14720916-14720571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):35, 54

               
               
               Conread position:591-951
               
               
               Cow position:chr28:4070830-4071172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):175, 32

               
               
               Conread position:591-951
               
               
               Cow position:chr28:4881384-4881035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:256
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):28, 122

               
               
               Conread position:591-951
               
               
               Cow position:chr28:9636592-9636243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:244
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):53, 32

               
               
               Conread position:591-951
               
               
               Cow position:chr28:11527398-11527045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-951
               
               
               Cow position:chr28:12964431-12964798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:252
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):119, 19

               
               
               Conread position:591-951
               
               
               Cow position:chr28:16204468-16204116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:247
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):254, 32

               
               
               Conread position:591-955
               
               
               Cow position:chr28:10053475-10053116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 128

               
               
               Conread position:591-956
               
               
               Cow position:chr28:5236738-5236376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 50

               
               
               Conread position:591-956
               
               
               Cow position:chr28:8408595-8408978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:262
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):131, 33

               
               
               Conread position:591-958
               
               
               Cow position:chr28:27218185-27218546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 33

               
               
               Conread position:591-959
               
               
               Cow position:chr28:751089-751451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 79

               
               
               Conread position:591-959
               
               
               Cow position:chr28:4884402-4884032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 32

               
               
               Conread position:591-959
               
               
               Cow position:chr28:21502255-21502605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:252
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):31, 39

               
               
               Conread position:591-959
               
               
               Cow position:chr28:26982882-26982512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 122

               
               
               Conread position:591-960
               
               
               Cow position:chr28:10606770-10606416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:263
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):20, 36

               
               
               Conread position:591-960
               
               
               Cow position:chr28:21103984-21103597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:268
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):33, 198

               
               
               Conread position:592-704
               
               
               Cow position:chr28:19222736-19222624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:93
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):28, 92

               
               
               Conread position:592-816
               
               
               Cow position:chr28:4841530-4841308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):123, 33

               
               
               Conread position:592-847
               
               
               Cow position:chr28:13176813-13176576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:592-870
               
               
               Cow position:chr28:2132057-2131788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):122, 15

               
               
               Conread position:592-929
               
               
               Cow position:chr28:4914236-4913900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):34, 214

               
               
               Conread position:592-939
               
               
               Cow position:chr28:33163602-33163274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):112, 33

               
               
               Conread position:592-940
               
               
               Cow position:chr28:23007872-23007539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):130, 32

               
               
               Conread position:592-940
               
               
               Cow position:chr28:23793441-23793117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):177, 36

               
               
               Conread position:592-941
               
               
               Cow position:chr28:24693137-24693482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:229
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):24, 58

               
               
               Conread position:592-941
               
               
               Cow position:chr28:26264665-26265034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:592-941
               
               
               Cow position:chr28:30327229-30326897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):135, 31

               
               
               Conread position:592-944
               
               
               Cow position:chr28:23616269-23616612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:592-944
               
               
               Cow position:chr28:34430561-34430216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 114

               
               
               Conread position:592-945
               
               
               Cow position:chr28:3746067-3746405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:235
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:592-949
               
               
               Cow position:chr28:3144030-3143672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:255
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):51, 189

               
               
               Conread position:592-949
               
               
               Cow position:chr28:15263859-15263506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):24, 117

               
               
               Conread position:592-950
               
               
               Cow position:chr28:16416502-16416857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:235
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):13, 66

               
               
               Conread position:592-951
               
               
               Cow position:chr28:5437226-5436872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 31

               
               
               Conread position:592-955
               
               
               Cow position:chr28:22371815-22371457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:259
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):116, 31

               
               
               Conread position:592-957
               
               
               Cow position:chr28:11585343-11584991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:243
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):131, 31

               
               
               Conread position:592-958
               
               
               Cow position:chr28:1837856-1838218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:255
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):62, 5

               
               
               Conread position:593-752
               
               
               Cow position:chr28:28903807-28903645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:593-753
               
               
               Cow position:chr28:118189-118031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):131, 12

               
               
               Conread position:593-797
               
               
               Cow position:chr28:4587962-4588160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):128, 30

               
               
               Conread position:593-798
               
               
               Cow position:chr28:22485108-22485317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):27, 80

               
               
               Conread position:593-813
               
               
               Cow position:chr28:25806434-25806652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):129, 109

               
               
               Conread position:593-840
               
               
               Cow position:chr28:31110143-31109898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):34, 117

               
               
               Conread position:593-842
               
               
               Cow position:chr28:2862728-2862976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):111, 30

               
               
               Conread position:593-842
               
               
               Cow position:chr28:8022246-8021995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):121, 30

               
               
               Conread position:593-858
               
               
               Cow position:chr28:26922502-26922244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:185
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):129, 14

               
               
               Conread position:593-875
               
               
               Cow position:chr28:19026149-19025864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):81, 30

               
               
               Conread position:593-930
               
               
               Cow position:chr28:14997928-14998257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):129, 15

               
               
               Conread position:593-934
               
               
               Cow position:chr28:4834979-4834646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:234
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):129, 30

               
               
               Conread position:593-935
               
               
               Cow position:chr28:16346664-16346339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):130, 30

               
               
               Conread position:593-941
               
               
               Cow position:chr28:7009112-7008777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):175, 30

               
               
               Conread position:593-941
               
               
               Cow position:chr28:33884271-33884607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:242
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):130, 30

               
               
               Conread position:593-944
               
               
               Cow position:chr28:4282627-4282282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 48

               
               
               Conread position:593-949
               
               
               Cow position:chr28:5144659-5144302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 61

               
               
               Conread position:593-949
               
               
               Cow position:chr28:10057729-10057375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:242
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):33, 114

               
               
               Conread position:593-951
               
               
               Cow position:chr28:34442896-34442542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):33, 114

               
               
               Conread position:593-957
               
               
               Cow position:chr28:23530731-23531083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):123, 102

               
               
               Conread position:593-958
               
               
               Cow position:chr28:16919297-16918953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:593-959
               
               
               Cow position:chr28:11866803-11866446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 32

               
               
               Conread position:594-860
               
               
               Cow position:chr28:29199590-29199856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):105, 29

               
               
               Conread position:594-937
               
               
               Cow position:chr28:20409256-20409591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:241
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):141, 29

               
               
               Conread position:594-941
               
               
               Cow position:chr28:16370212-16369885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:594-959
               
               
               Cow position:chr28:616248-616591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:241
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):128, 32

               
               
               Conread position:594-960
               
               
               Cow position:chr28:14657564-14657940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:263
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):43, 153

               
               
               Conread position:595-856
               
               
               Cow position:chr28:21598389-21598129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):127, 28

               
               
               Conread position:595-949
               
               
               Cow position:chr28:3449164-3449521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:249
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):29, 111

               
               
               Conread position:596-761
               
               
               Cow position:chr28:5553077-5552913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):106, 28

               
               
               Conread position:596-768
               
               
               Cow position:chr28:5904598-5904766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:596-796
               
               
               Cow position:chr28:7751431-7751239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):127, 27

               
               
               Conread position:596-935
               
               
               Cow position:chr28:22323133-22323457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:225
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):126, 96

               
               
               Conread position:596-937
               
               
               Cow position:chr28:24082133-24082470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:241
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):39, 27

               
               
               Conread position:596-941
               
               
               Cow position:chr28:5684576-5684904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):113, 27

               
               
               Conread position:596-941
               
               
               Cow position:chr28:8787405-8787743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 27

               
               
               Conread position:596-945
               
               
               Cow position:chr28:34230096-34230439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 88

               
               
               Conread position:596-959
               
               
               Cow position:chr28:23296190-23296539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):39, 17

               
               
               Conread position:597-941
               
               
               Cow position:chr28:29989246-29988904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):167, 26

               
               
               Conread position:597-949
               
               
               Cow position:chr28:5193187-5193537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:253
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):107, 8

               
               
               Conread position:598-896
               
               
               Cow position:chr28:1538036-1538327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):25, 74

               
               
               Conread position:598-960
               
               
               Cow position:chr28:1315695-1315325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:240
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):57, 25

               
               
               Conread position:601-941
               
               
               Cow position:chr28:11346614-11346285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:238
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):129, 93

               
               
               Conread position:601-954
               
               
               Cow position:chr28:5577390-5577749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:246
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):19, 101

               
               
               Conread position:604-935
               
               
               Cow position:chr28:5273562-5273229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):121, 7

               
               
               Conread position:604-940
               
               
               Cow position:chr28:12672587-12672258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):118, 20

               
               
               Conread position:604-950
               
               
               Cow position:chr28:30234265-30234597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):180, 98

               
               
               Conread position:604-957
               
               
               Cow position:chr28:7144662-7145022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:240
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):99, 121

               
               
               Conread position:606-958
               
               
               Cow position:chr28:23447949-23447613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:230
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):116, 89

               
               
               Conread position:607-807
               
               
               Cow position:chr28:25071002-25071192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):16, 51

               
               
               Conread position:607-937
               
               
               Cow position:chr28:22308525-22308844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:609-753
               
               
               Cow position:chr28:19394495-19394638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):10, 41

               
               
               Conread position:609-939
               
               
               Cow position:chr28:11079185-11079502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):114, 14

               
               
               Conread position:611-950
               
               
               Cow position:chr28:6358530-6358197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:233
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):93, 38

               
               
               Conread position:614-941
               
               
               Cow position:chr28:11762580-11762902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):109, 80

               
               
               Conread position:617-951
               
               
               Cow position:chr28:10616071-10615737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:240
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):8, 35

               
               
               Conread position:618-808
               
               
               Cow position:chr28:5826837-5827024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):27, 91

               
               
               Conread position:618-941
               
               
               Cow position:chr28:7372234-7371906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):238, 9

               
               
               Conread position:618-958
               
               
               Cow position:chr28:19564341-19564019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):112, 28

               
               
               Conread position:619-855
               
               
               Cow position:chr28:5166654-5166888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):60, 51

               
               
               Conread position:619-935
               
               
               Cow position:chr28:25128771-25129082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):103, 162

               
               
               Conread position:619-937
               
               
               Cow position:chr28:24686950-24687262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:207
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):222, 75

               
               
               Conread position:619-941
               
               
               Cow position:chr28:3011385-3011063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 96

               
               
               Conread position:619-958
               
               
               Cow position:chr28:3484465-3484807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 127

               
               
               Conread position:621-926
               
               
               Cow position:chr28:18370118-18369824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):85, 102

               
               
               Conread position:621-957
               
               
               Cow position:chr28:2523829-2524161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):17, 95

               
               
               Conread position:623-929
               
               
               Cow position:chr28:17071225-17071532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):61, 75

               
               
               Conread position:624-918
               
               
               Cow position:chr28:26055368-26055659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):88, 99

               
               
               Conread position:624-929
               
               
               Cow position:chr28:12363268-12362968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):50, 83

               
               
               Conread position:624-941
               
               
               Cow position:chr28:2801132-2801431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:626-938
               
               
               Cow position:chr28:15601170-15601475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):78, 94

               
               
               Conread position:627-950
               
               
               Cow position:chr28:11307612-11307305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:225
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):211, 74

               
               
               Conread position:629-870
               
               
               Cow position:chr28:32174527-32174767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):125, 73

               
               
               Conread position:629-941
               
               
               Cow position:chr28:4181900-4182205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):13, 69

               
               
               Conread position:632-879
               
               
               Cow position:chr28:13090628-13090387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):13, 67

               
               
               Conread position:632-941
               
               
               Cow position:chr28:5139097-5138795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):5, 128

               
               
               Conread position:633-960
               
               
               Cow position:chr28:11197771-11197450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):19, 72

               
               
               Conread position:640-875
               
               
               Cow position:chr28:8147953-8147723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:643-920
               
               
               Cow position:chr28:11559722-11559453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):90, 23

               
               
               Conread position:650-931
               
               
               Cow position:chr28:4045771-4046038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:650-935
               
               
               Cow position:chr28:23578819-23579100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):33, 53

               
               
               Conread position:650-959
               
               
               Cow position:chr28:7350576-7350877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):72, 47

               
               
               Conread position:654-954
               
               
               Cow position:chr28:11815156-11814860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):149, 59

               
               
               Conread position:655-951
               
               
               Cow position:chr28:10589100-10588820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):68, 58

               
               
               Conread position:658-941
               
               
               Cow position:chr28:3411066-3410785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):9, 157

               
               
               Conread position:661-949
               
               
               Cow position:chr28:12662472-12662178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:665-941
               
               
               Cow position:chr28:4013020-4013287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:200
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):65, 37

               
               
               Conread position:665-951
               
               
               Cow position:chr28:33322387-33322666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):65, 77

               
               
               Conread position:673-941
               
               
               Cow position:chr28:7619211-7618956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):50, 43

               
               
               Conread position:673-941
               
               
               Cow position:chr28:18847491-18847765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):85, 49

               
               
               Conread position:673-941
               
               
               Cow position:chr28:20759760-20759489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):62, 35

               
               
               Conread position:673-950
               
               
               Cow position:chr28:10977784-10978051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):90, 40

               
               
               Conread position:673-959
               
               
               Cow position:chr28:34786505-34786784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:674-949
               
               
               Cow position:chr28:5630028-5630311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:207
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):30, 146

               
               
               Conread position:676-945
               
               
               Cow position:chr28:6935238-6934968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):54, 21

               
               
               Conread position:680-944
               
               
               Cow position:chr28:11059451-11059698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:681-943
               
               
               Cow position:chr28:23638622-23638878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):18, 138

               
               
               Conread position:681-948
               
               
               Cow position:chr28:3445533-3445268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):41, 29

               
               
               Conread position:683-941
               
               
               Cow position:chr28:34843623-34843368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):36, 23

               
               
               Conread position:683-949
               
               
               Cow position:chr28:3726262-3725996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):41, 23

               
               
               Conread position:685-941
               
               
               Cow position:chr28:5235835-5236078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:690-875
               
               
               Cow position:chr28:7498191-7498006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:690-945
               
               
               Cow position:chr28:4185859-4186111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):9, 52

               
               
               Conread position:695-941
               
               
               Cow position:chr28:17739786-17740029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):35, 7

               
               
               Conread position:695-950
               
               
               Cow position:chr28:777634-777889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):10, 160

               
               
               Conread position:697-949
               
               
               Cow position:chr28:8827127-8827376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):20, 11

               
               
               Conread position:698-955
               
               
               Cow position:chr28:5254838-5255093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):25, 17

               
               
               Conread position:702-937
               
               
               Cow position:chr28:8304214-8304442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):21, 75

               
               
               Conread position:702-941
               
               
               Cow position:chr28:9705622-9705860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):22, 6

               
               
               Conread position:706-948
               
               
               Cow position:chr28:12088678-12088435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):11, 17

               
               
               Conread position:707-935
               
               
               Cow position:chr28:27721674-27721894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):9, 50

               
               
               Conread position:707-949
               
               
               Cow position:chr28:6283517-6283278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):9, 64

               
               
               Conread position:709-941
               
               
               Cow position:chr28:7132112-7131887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):81, 60

               
               
               Conread position:709-952
               
               
               Cow position:chr28:3200433-3200677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:710-930
               
               
               Cow position:chr28:11058066-11057850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):20, 9

               
               
               Conread position:710-952
               
               
               Cow position:chr28:4006762-4006996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):114, 45

               
               
               Conread position:710-952
               
               
               Cow position:chr28:12991111-12991350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):14, 154

               
               
               Conread position:710-957
               
               
               Cow position:chr28:6975216-6975454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):31, 148

               
               
               Conread position:711-959
               
               
               Cow position:chr28:13133608-13133857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:712-949
               
               
               Cow position:chr28:19128192-19127960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):30, 87

               
               
               Conread position:714-941
               
               
               Cow position:chr28:11398818-11398590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:714-944
               
               
               Cow position:chr28:4937263-4937032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:716-959
               
               
               Cow position:chr28:4101501-4101732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):7, 139

               
               
               Conread position:717-949
               
               
               Cow position:chr28:5231920-5232153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):5, 125

               
               
               Conread position:721-951
               
               
               Cow position:chr28:13048296-13048065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):198, 30

               
               
               Conread position:726-948
               
               
               Cow position:chr28:6563906-6563683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):59, 186

               
               
               Conread position:727-959
               
               
               Cow position:chr28:1655107-1654869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):31, 131

               
               
               Conread position:729-929
               
               
               Cow position:chr28:16879568-16879760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:729-956
               
               
               Cow position:chr28:5805666-5805881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:730-937
               
               
               Cow position:chr28:19039023-19038818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):101, 88

               
               
               Conread position:730-941
               
               
               Cow position:chr28:15362575-15362782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:730-945
               
               
               Cow position:chr28:30902122-30902329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:731-937
               
               
               Cow position:chr28:5188432-5188229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):72, 133

               
               
               Conread position:731-958
               
               
               Cow position:chr28:5673872-5674094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):111, 132

               
               
               Conread position:732-937
               
               
               Cow position:chr28:8259626-8259832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:732-941
               
               
               Cow position:chr28:11411538-11411335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):23, 127

               
               
               Conread position:733-929
               
               
               Cow position:chr28:18608369-18608173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:734-941
               
               
               Cow position:chr28:7557734-7557523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:734-959
               
               
               Cow position:chr28:659294-659065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):42, 13

               
               
               Conread position:734-959
               
               
               Cow position:chr28:4876443-4876659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:737-945
               
               
               Cow position:chr28:4073972-4074185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:739-951
               
               
               Cow position:chr28:9109221-9109425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:741-949
               
               
               Cow position:chr28:4022680-4022883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):164, 0

               
               
               Conread position:741-949
               
               
               Cow position:chr28:25827724-25827516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:747-937
               
               
               Cow position:chr28:20968567-20968376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:748-939
               
               
               Cow position:chr28:10203135-10203314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:748-958
               
               
               Cow position:chr28:10252903-10252692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):195, 104

               
               
               Conread position:756-940
               
               
               Cow position:chr28:2821275-2821464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:756-944
               
               
               Cow position:chr28:2825441-2825628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):96, 119

               
               
               Conread position:756-959
               
               
               Cow position:chr28:27445551-27445354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):82, 95

               
               
               Conread position:757-949
               
               
               Cow position:chr28:2892275-2892468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:757-949
               
               
               Cow position:chr28:17620337-17620147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:757-951
               
               
               Cow position:chr28:3678385-3678573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:757-951
               
               
               Cow position:chr28:7644763-7644960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):45, 60

               
               
               Conread position:759-941
               
               
               Cow position:chr28:2151415-2151236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:764-949
               
               
               Cow position:chr28:2077530-2077713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:772-951
               
               
               Cow position:chr28:16200705-16200526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:773-925
               
               
               Cow position:chr28:19118008-19118160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):65, 78

               
               
               Conread position:773-941
               
               
               Cow position:chr28:17680661-17680829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:773-947
               
               
               Cow position:chr28:26820240-26820066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):103, 28

               
               
               Conread position:773-948
               
               
               Cow position:chr28:11562207-11562032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:773-949
               
               
               Cow position:chr28:20281797-20281960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:774-941
               
               
               Cow position:chr28:5609877-5609714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:774-941
               
               
               Cow position:chr28:8936190-8936352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:774-941
               
               
               Cow position:chr28:17738113-17737946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:774-948
               
               
               Cow position:chr28:26826259-26826436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):162, 0

               
               
               Conread position:774-949
               
               
               Cow position:chr28:4163543-4163368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:774-949
               
               
               Cow position:chr28:6301121-6301296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):70, 79

               
               
               Conread position:774-949
               
               
               Cow position:chr28:8681390-8681225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:774-950
               
               
               Cow position:chr28:118649-118827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:774-951
               
               
               Cow position:chr28:28903520-28903345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:774-952
               
               
               Cow position:chr28:5552675-5552489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:774-955
               
               
               Cow position:chr28:117723-117540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:774-955
               
               
               Cow position:chr28:2777570-2777748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:774-955
               
               
               Cow position:chr28:18791079-18791252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:774-958
               
               
               Cow position:chr28:26868111-26867931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):176, 76

               
               
               Conread position:774-959
               
               
               Cow position:chr28:11305593-11305410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):163, 83

               
               
               Conread position:774-960
               
               
               Cow position:chr28:4077306-4077116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):97, 175

               
               
               Conread position:774-960
               
               
               Cow position:chr28:9677709-9677884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:775-928
               
               
               Cow position:chr28:3729978-3729829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:112
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:775-936
               
               
               Cow position:chr28:28501272-28501440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:775-939
               
               
               Cow position:chr28:8656125-8655965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:775-940
               
               
               Cow position:chr28:30385193-30385358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:775-941
               
               
               Cow position:chr28:20173880-20174042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):70, 48

               
               
               Conread position:775-945
               
               
               Cow position:chr28:7413700-7413871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:775-948
               
               
               Cow position:chr28:11827726-11827900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):164, 0

               
               
               Conread position:775-951
               
               
               Cow position:chr28:3759031-3759211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:775-951
               
               
               Cow position:chr28:19394912-19395077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:775-955
               
               
               Cow position:chr28:8716347-8716161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:775-955
               
               
               Cow position:chr28:10958843-10959018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):163, 89

               
               
               Conread position:775-957
               
               
               Cow position:chr28:13371106-13370920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):45, 89

               
               
               Conread position:775-959
               
               
               Cow position:chr28:13356331-13356144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:775-959
               
               
               Cow position:chr28:19994909-19994724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):47, 61

               
               
               Conread position:775-959
               
               
               Cow position:chr28:22085501-22085323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):162, 73

               
               
               Conread position:775-959
               
               
               Cow position:chr28:29500441-29500632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:776-959
               
               
               Cow position:chr28:3423819-3424001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):163, 74

               
               
               Conread position:779-955
               
               
               Cow position:chr28:11239275-11239094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):22, 139

               
               
               Conread position:780-939
               
               
               Cow position:chr28:4866527-4866376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:780-949
               
               
               Cow position:chr28:21118723-21118892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):121, 117

               
               
               Conread position:780-949
               
               
               Cow position:chr28:32014830-32014997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:781-948
               
               
               Cow position:chr28:21744762-21744924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):158, 83

               
               
               Conread position:782-935
               
               
               Cow position:chr28:4870757-4870598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:782-945
               
               
               Cow position:chr28:32284192-32284032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):72, 18

               
               
               Conread position:782-951
               
               
               Cow position:chr28:34830202-34830368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:784-951
               
               
               Cow position:chr28:26304113-26304281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):69, 122

               
               
               Conread position:787-940
               
               
               Cow position:chr28:21263210-21263357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:787-941
               
               
               Cow position:chr28:4588371-4588518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:788-957
               
               
               Cow position:chr28:24767458-24767628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):112, 168

               
               
               Conread position:789-959
               
               
               Cow position:chr28:7523361-7523194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:790-945
               
               
               Cow position:chr28:16857051-16856898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:790-960
               
               
               Cow position:chr28:3311168-3310997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:791-938
               
               
               Cow position:chr28:22278575-22278424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:792-936
               
               
               Cow position:chr28:3257046-3257189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:792-950
               
               
               Cow position:chr28:10480749-10480588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):84, 9

               
               
               Conread position:795-951
               
               
               Cow position:chr28:8165155-8164998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):110, 114

               
               
               Conread position:817-957
               
               
               Cow position:chr28:18761927-18761789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:827-958
               
               
               Cow position:chr28:27941690-27941561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:527-842
               
               
               Cow position:chr29:11054075-11053759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:220
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):23, 184

               
               
               Conread position:553-845
               
               
               Cow position:chr29:44008967-44008681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):40, 154

               
               
               Conread position:558-816
               
               
               Cow position:chr29:29314829-29314577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):167, 23

               
               
               Conread position:559-720
               
               
               Cow position:chr29:3395925-3396086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):16, 10

               
               
               Conread position:561-875
               
               
               Cow position:chr29:10156479-10156172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):161, 27

               
               
               Conread position:564-932
               
               
               Cow position:chr29:24045818-24046187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 9

               
               
               Conread position:566-709
               
               
               Cow position:chr29:32767695-32767553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:566-753
               
               
               Cow position:chr29:11684838-11685019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):168, 52

               
               
               Conread position:566-791
               
               
               Cow position:chr29:41747266-41747498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:566-941
               
               
               Cow position:chr29:22068922-22068543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 273

               
               
               Conread position:566-941
               
               
               Cow position:chr29:25737590-25737222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:259
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):26, 54

               
               
               Conread position:566-941
               
               
               Cow position:chr29:35501823-35501467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:261
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):26, 58

               
               
               Conread position:566-941
               
               
               Cow position:chr29:36209990-36210348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:259
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):21, 61

               
               
               Conread position:566-959
               
               
               Cow position:chr29:3237532-3237133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:255
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):27, 86

               
               
               Conread position:567-742
               
               
               Cow position:chr29:39643006-39643177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):59, 18

               
               
               Conread position:569-940
               
               
               Cow position:chr29:43328471-43328829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:254
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):19, 55

               
               
               Conread position:574-761
               
               
               Cow position:chr29:94719-94537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):24, 82

               
               
               Conread position:574-805
               
               
               Cow position:chr29:2071739-2071507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):5, 136

               
               
               Conread position:574-840
               
               
               Cow position:chr29:9638482-9638221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):23, 122

               
               
               Conread position:574-930
               
               
               Cow position:chr29:39111479-39111137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):18, 51

               
               
               Conread position:574-941
               
               
               Cow position:chr29:11646933-11647312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:264
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):128, 23

               
               
               Conread position:574-941
               
               
               Cow position:chr29:35677715-35677343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 136

               
               
               Conread position:574-941
               
               
               Cow position:chr29:41530679-41531049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 31

               
               
               Conread position:574-959
               
               
               Cow position:chr29:21933279-21932905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):14, 93

               
               
               Conread position:576-809
               
               
               Cow position:chr29:9139246-9139489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):12, 203

               
               
               Conread position:576-902
               
               
               Cow position:chr29:856572-856241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):128, 14

               
               
               Conread position:576-930
               
               
               Cow position:chr29:7425474-7425823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:235
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):43, 118

               
               
               Conread position:576-930
               
               
               Cow position:chr29:18878663-18878295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 93

               
               
               Conread position:576-941
               
               
               Cow position:chr29:35405952-35405592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):50, 15

               
               
               Conread position:576-959
               
               
               Cow position:chr29:25267963-25268354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:256
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):44, 16

               
               
               Conread position:576-960
               
               
               Cow position:chr29:34773896-34773531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:255
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):16, 48

               
               
               Conread position:577-830
               
               
               Cow position:chr29:6293637-6293388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):15, 127

               
               
               Conread position:577-938
               
               
               Cow position:chr29:25091951-25092299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:249
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):11, 47

               
               
               Conread position:577-941
               
               
               Cow position:chr29:11433961-11434310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:252
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):15, 88

               
               
               Conread position:577-941
               
               
               Cow position:chr29:17296970-17297336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 132

               
               
               Conread position:577-941
               
               
               Cow position:chr29:32799873-32799505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:256
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):15, 143

               
               
               Conread position:577-947
               
               
               Cow position:chr29:40117411-40117768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 26

               
               
               Conread position:577-960
               
               
               Cow position:chr29:12679997-12680377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 47

               
               
               Conread position:579-768
               
               
               Cow position:chr29:2532906-2533086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):13, 45

               
               
               Conread position:579-866
               
               
               Cow position:chr29:28166372-28166097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):13, 45

               
               
               Conread position:579-941
               
               
               Cow position:chr29:38580820-38581190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:254
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):9, 32

               
               
               Conread position:581-816
               
               
               Cow position:chr29:24103702-24103466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:581-816
               
               
               Cow position:chr29:24252081-24252310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):6, 44

               
               
               Conread position:581-831
               
               
               Cow position:chr29:44682254-44682014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:581-889
               
               
               Cow position:chr29:7966092-7966391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):38, 67

               
               
               Conread position:581-923
               
               
               Cow position:chr29:38581818-38582150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:234
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):8, 104

               
               
               Conread position:581-937
               
               
               Cow position:chr29:4085162-4085490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:247
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):11, 75

               
               
               Conread position:581-937
               
               
               Cow position:chr29:4480329-4479973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:248
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:581-940
               
               
               Cow position:chr29:28739467-28739824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):152, 126

               
               
               Conread position:581-947
               
               
               Cow position:chr29:28195670-28195329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):36, 44

               
               
               Conread position:581-949
               
               
               Cow position:chr29:31674473-31674837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 43

               
               
               Conread position:582-860
               
               
               Cow position:chr29:6286314-6286042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:582-922
               
               
               Cow position:chr29:18735795-18735470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):44, 64

               
               
               Conread position:583-866
               
               
               Cow position:chr29:13372510-13372788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):6, 43

               
               
               Conread position:584-804
               
               
               Cow position:chr29:41364957-41365172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):41, 121

               
               
               Conread position:585-732
               
               
               Cow position:chr29:9686154-9686009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:585-752
               
               
               Cow position:chr29:45383973-45384138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:585-803
               
               
               Cow position:chr29:26771284-26771501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):145, 43

               
               
               Conread position:585-826
               
               
               Cow position:chr29:40166093-40166328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):15, 39

               
               
               Conread position:585-866
               
               
               Cow position:chr29:41811734-41811464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):114, 38

               
               
               Conread position:585-939
               
               
               Cow position:chr29:7956136-7955792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):42, 58

               
               
               Conread position:585-941
               
               
               Cow position:chr29:1307016-1306665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:233
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):42, 57

               
               
               Conread position:585-941
               
               
               Cow position:chr29:10058688-10058345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):124, 38

               
               
               Conread position:585-948
               
               
               Cow position:chr29:16272573-16272949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:255
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:585-949
               
               
               Cow position:chr29:26017662-26017294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 106

               
               
               Conread position:585-952
               
               
               Cow position:chr29:4120691-4121064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 160

               
               
               Conread position:586-743
               
               
               Cow position:chr29:26411909-26411755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:587-944
               
               
               Cow position:chr29:35084373-35084022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 105

               
               
               Conread position:588-798
               
               
               Cow position:chr29:17301380-17301591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):121, 36

               
               
               Conread position:588-949
               
               
               Cow position:chr29:11398072-11397707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:258
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):129, 37

               
               
               Conread position:591-695
               
               
               Cow position:chr29:4065940-4066043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:87
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-699
               
               
               Cow position:chr29:4805085-4805193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:89
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):35, 67

               
               
               Conread position:591-751
               
               
               Cow position:chr29:24345596-24345437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):115, 33

               
               
               Conread position:591-752
               
               
               Cow position:chr29:30188486-30188326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):131, 115

               
               
               Conread position:591-752
               
               
               Cow position:chr29:40615669-40615509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):95, 34

               
               
               Conread position:591-752
               
               
               Cow position:chr29:40936360-40936196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:591-761
               
               
               Cow position:chr29:4334581-4334746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):131, 79

               
               
               Conread position:591-766
               
               
               Cow position:chr29:14484692-14484512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:591-767
               
               
               Cow position:chr29:31594276-31594101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):127, 32

               
               
               Conread position:591-788
               
               
               Cow position:chr29:31926436-31926242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:591-824
               
               
               Cow position:chr29:6925866-6926088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):135, 33

               
               
               Conread position:591-824
               
               
               Cow position:chr29:43009228-43009001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-831
               
               
               Cow position:chr29:10235275-10235044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-834
               
               
               Cow position:chr29:868627-868868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):35, 116

               
               
               Conread position:591-838
               
               
               Cow position:chr29:23984105-23983858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):39, 32

               
               
               Conread position:591-839
               
               
               Cow position:chr29:5186641-5186395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):114, 32

               
               
               Conread position:591-841
               
               
               Cow position:chr29:2984738-2984990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):28, 126

               
               
               Conread position:591-842
               
               
               Cow position:chr29:28868490-28868744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-842
               
               
               Cow position:chr29:29176759-29176516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):61, 13

               
               
               Conread position:591-844
               
               
               Cow position:chr29:17607274-17607520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):134, 26

               
               
               Conread position:591-848
               
               
               Cow position:chr29:1229465-1229714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):177, 52

               
               
               Conread position:591-850
               
               
               Cow position:chr29:26654183-26653935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):160, 79

               
               
               Conread position:591-857
               
               
               Cow position:chr29:463800-463537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):34, 56

               
               
               Conread position:591-866
               
               
               Cow position:chr29:36216971-36217235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):110, 32

               
               
               Conread position:591-867
               
               
               Cow position:chr29:15738487-15738214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):35, 50

               
               
               Conread position:591-870
               
               
               Cow position:chr29:23244026-23243749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-872
               
               
               Cow position:chr29:32290456-32290743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):31, 120

               
               
               Conread position:591-874
               
               
               Cow position:chr29:17409185-17409468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):32, 108

               
               
               Conread position:591-875
               
               
               Cow position:chr29:6844777-6844498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:196
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):35, 94

               
               
               Conread position:591-875
               
               
               Cow position:chr29:19338837-19339131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):19, 273

               
               
               Conread position:591-876
               
               
               Cow position:chr29:32211202-32210936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-904
               
               
               Cow position:chr29:9718915-9718614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):129, 32

               
               
               Conread position:591-912
               
               
               Cow position:chr29:87164-86835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:228
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:591-912
               
               
               Cow position:chr29:3100404-3100096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:223
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):296, 105

               
               
               Conread position:591-928
               
               
               Cow position:chr29:4520189-4520517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 32

               
               
               Conread position:591-928
               
               
               Cow position:chr29:13639516-13639184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 35

               
               
               Conread position:591-929
               
               
               Cow position:chr29:16609595-16609936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:591-929
               
               
               Cow position:chr29:36586433-36586755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):35, 54

               
               
               Conread position:591-933
               
               
               Cow position:chr29:21443490-21443151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:239
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):35, 117

               
               
               Conread position:591-935
               
               
               Cow position:chr29:22175542-22175882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):274, 25

               
               
               Conread position:591-937
               
               
               Cow position:chr29:24952542-24952881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):177, 33

               
               
               Conread position:591-938
               
               
               Cow position:chr29:42364160-42363824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):151, 32

               
               
               Conread position:591-939
               
               
               Cow position:chr29:22714870-22714514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:239
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-939
               
               
               Cow position:chr29:34745808-34745465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 33

               
               
               Conread position:591-940
               
               
               Cow position:chr29:12784103-12783758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:254
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):143, 111

               
               
               Conread position:591-941
               
               
               Cow position:chr29:732475-732808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:244
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):76, 20

               
               
               Conread position:591-941
               
               
               Cow position:chr29:1022147-1022492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):30, 116

               
               
               Conread position:591-941
               
               
               Cow position:chr29:9709550-9709891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr29:12025617-12025281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 37

               
               
               Conread position:591-941
               
               
               Cow position:chr29:17109822-17110151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:246
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-941
               
               
               Cow position:chr29:19762130-19762461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:248
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):61, 33

               
               
               Conread position:591-941
               
               
               Cow position:chr29:22162399-22162066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:242
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr29:27816208-27816534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):22, 34

               
               
               Conread position:591-941
               
               
               Cow position:chr29:34297711-34297373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:242
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):140, 33

               
               
               Conread position:591-941
               
               
               Cow position:chr29:36220382-36220741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 5

               
               
               Conread position:591-941
               
               
               Cow position:chr29:45005769-45005435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:238
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):115, 16

               
               
               Conread position:591-945
               
               
               Cow position:chr29:1325295-1325648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:239
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):65, 27

               
               
               Conread position:591-946
               
               
               Cow position:chr29:22778324-22777978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:244
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):131, 115

               
               
               Conread position:591-947
               
               
               Cow position:chr29:40891844-40891503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 120

               
               
               Conread position:591-949
               
               
               Cow position:chr29:377592-377231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):32, 60

               
               
               Conread position:591-949
               
               
               Cow position:chr29:4625142-4624792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:243
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):36, 54

               
               
               Conread position:591-949
               
               
               Cow position:chr29:23844689-23845046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:244
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):28, 55

               
               
               Conread position:591-949
               
               
               Cow position:chr29:37618160-37618514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 33

               
               
               Conread position:591-951
               
               
               Cow position:chr29:3685657-3685313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):189, 35

               
               
               Conread position:591-951
               
               
               Cow position:chr29:5409293-5408931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:257
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):28, 100

               
               
               Conread position:591-951
               
               
               Cow position:chr29:8669220-8669559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:249
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):135, 58

               
               
               Conread position:591-951
               
               
               Cow position:chr29:17462932-17462570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:260
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):16, 75

               
               
               Conread position:591-952
               
               
               Cow position:chr29:10838804-10839151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:241
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):351, 32

               
               
               Conread position:591-955
               
               
               Cow position:chr29:26275471-26275814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:243
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):134, 26

               
               
               Conread position:591-955
               
               
               Cow position:chr29:31928835-31929199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:256
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):78, 32

               
               
               Conread position:591-958
               
               
               Cow position:chr29:6337514-6337865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 115

               
               
               Conread position:591-959
               
               
               Cow position:chr29:16195703-16196073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:259
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):133, 75

               
               
               Conread position:591-959
               
               
               Cow position:chr29:16617486-16617843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:229
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):132, 99

               
               
               Conread position:591-959
               
               
               Cow position:chr29:19949167-19949524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:267
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):98, 28

               
               
               Conread position:591-959
               
               
               Cow position:chr29:29769497-29769136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-959
               
               
               Cow position:chr29:34744763-34744414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:257
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):135, 71

               
               
               Conread position:591-959
               
               
               Cow position:chr29:35291944-35292301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 33

               
               
               Conread position:591-960
               
               
               Cow position:chr29:2744418-2744053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 33

               
               
               Conread position:592-792
               
               
               Cow position:chr29:19792421-19792225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):28, 105

               
               
               Conread position:592-808
               
               
               Cow position:chr29:15940778-15940563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):129, 33

               
               
               Conread position:592-808
               
               
               Cow position:chr29:37961123-37960909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):51, 32

               
               
               Conread position:592-842
               
               
               Cow position:chr29:17154622-17154879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):110, 33

               
               
               Conread position:592-854
               
               
               Cow position:chr29:20903429-20903177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):131, 31

               
               
               Conread position:592-879
               
               
               Cow position:chr29:29512285-29512003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:592-912
               
               
               Cow position:chr29:29795533-29795211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 124

               
               
               Conread position:592-922
               
               
               Cow position:chr29:28396543-28396876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):34, 74

               
               
               Conread position:592-930
               
               
               Cow position:chr29:20933564-20933902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):34, 80

               
               
               Conread position:592-937
               
               
               Cow position:chr29:40583648-40583979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):130, 32

               
               
               Conread position:592-939
               
               
               Cow position:chr29:40763823-40763500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:231
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):217, 31

               
               
               Conread position:592-940
               
               
               Cow position:chr29:40959993-40959646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:228
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):199, 83

               
               
               Conread position:592-941
               
               
               Cow position:chr29:14501449-14501793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:245
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):28, 56

               
               
               Conread position:592-941
               
               
               Cow position:chr29:16657543-16657889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:242
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):27, 220

               
               
               Conread position:592-941
               
               
               Cow position:chr29:26269922-26270266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:238
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):34, 53

               
               
               Conread position:592-941
               
               
               Cow position:chr29:29057036-29057377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:242
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):34, 65

               
               
               Conread position:592-941
               
               
               Cow position:chr29:29475397-29475055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):218, 33

               
               
               Conread position:592-941
               
               
               Cow position:chr29:36530722-36531064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 31

               
               
               Conread position:592-948
               
               
               Cow position:chr29:20910842-20910484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:236
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):28, 115

               
               
               Conread position:592-948
               
               
               Cow position:chr29:32733173-32733507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:246
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):322, 32

               
               
               Conread position:592-949
               
               
               Cow position:chr29:10018429-10018774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:245
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):34, 60

               
               
               Conread position:592-949
               
               
               Cow position:chr29:25814980-25814629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 34

               
               
               Conread position:592-950
               
               
               Cow position:chr29:1933702-1933363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):30, 77

               
               
               Conread position:592-951
               
               
               Cow position:chr29:22690078-22690435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:240
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):52, 116

               
               
               Conread position:593-820
               
               
               Cow position:chr29:4052128-4051912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):116, 31

               
               
               Conread position:593-875
               
               
               Cow position:chr29:40299156-40298886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):31, 48

               
               
               Conread position:593-918
               
               
               Cow position:chr29:5275399-5275076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):33, 59

               
               
               Conread position:593-922
               
               
               Cow position:chr29:19389340-19389659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):27, 105

               
               
               Conread position:593-928
               
               
               Cow position:chr29:21706534-21706212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):129, 91

               
               
               Conread position:593-941
               
               
               Cow position:chr29:8926598-8926252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):108, 23

               
               
               Conread position:593-944
               
               
               Cow position:chr29:20626431-20626771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:237
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):158, 102

               
               
               Conread position:593-945
               
               
               Cow position:chr29:24292724-24293072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 62

               
               
               Conread position:593-949
               
               
               Cow position:chr29:29942877-29942520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):26, 113

               
               
               Conread position:593-958
               
               
               Cow position:chr29:11915676-11916037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:258
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):116, 37

               
               
               Conread position:593-960
               
               
               Cow position:chr29:31489177-31489543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:255
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):129, 36

               
               
               Conread position:594-935
               
               
               Cow position:chr29:2644448-2644129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):28, 131

               
               
               Conread position:594-941
               
               
               Cow position:chr29:699762-699430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:238
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):32, 103

               
               
               Conread position:594-941
               
               
               Cow position:chr29:23874316-23874660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 14

               
               
               Conread position:594-951
               
               
               Cow position:chr29:40096817-40097189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:269
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):28, 59

               
               
               Conread position:595-936
               
               
               Cow position:chr29:43099886-43099556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):127, 12

               
               
               Conread position:595-941
               
               
               Cow position:chr29:19428516-19428848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):127, 111

               
               
               Conread position:595-949
               
               
               Cow position:chr29:26334528-26334183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):135, 30

               
               
               Conread position:595-951
               
               
               Cow position:chr29:27668797-27668445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:233
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):135, 38

               
               
               Conread position:595-959
               
               
               Cow position:chr29:22613284-22613635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 28

               
               
               Conread position:596-866
               
               
               Cow position:chr29:37599349-37599095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:596-900
               
               
               Cow position:chr29:16309601-16309903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:205
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):126, 28

               
               
               Conread position:596-941
               
               
               Cow position:chr29:23697834-23698168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:241
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):25, 111

               
               
               Conread position:596-949
               
               
               Cow position:chr29:2055916-2056267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:247
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):126, 99

               
               
               Conread position:596-951
               
               
               Cow position:chr29:27833847-27834197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:245
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):127, 90

               
               
               Conread position:597-837
               
               
               Cow position:chr29:9912032-9912272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):102, 27

               
               
               Conread position:597-844
               
               
               Cow position:chr29:39567547-39567785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):125, 27

               
               
               Conread position:597-937
               
               
               Cow position:chr29:28197146-28196826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:241
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):12, 27

               
               
               Conread position:597-945
               
               
               Cow position:chr29:17222272-17222618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 27

               
               
               Conread position:597-959
               
               
               Cow position:chr29:35458915-35458555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 27

               
               
               Conread position:598-842
               
               
               Cow position:chr29:27329753-27329993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):124, 25

               
               
               Conread position:598-875
               
               
               Cow position:chr29:26559381-26559114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):23, 53

               
               
               Conread position:600-809
               
               
               Cow position:chr29:26615859-26615652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):122, 23

               
               
               Conread position:602-960
               
               
               Cow position:chr29:44378554-44378189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:246
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):22, 77

               
               
               Conread position:604-958
               
               
               Cow position:chr29:28735178-28734831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:236
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):16, 67

               
               
               Conread position:604-959
               
               
               Cow position:chr29:40995024-40994664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:249
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):11, 24

               
               
               Conread position:607-866
               
               
               Cow position:chr29:25333591-25333336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):103, 18

               
               
               Conread position:607-921
               
               
               Cow position:chr29:8176518-8176835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:607-925
               
               
               Cow position:chr29:5122001-5121679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):11, 111

               
               
               Conread position:608-955
               
               
               Cow position:chr29:34359109-34358766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:235
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):264, 15

               
               
               Conread position:609-944
               
               
               Cow position:chr29:24035531-24035209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):121, 97

               
               
               Conread position:609-956
               
               
               Cow position:chr29:38440114-38440470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:237
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):91, 129

               
               
               Conread position:610-936
               
               
               Cow position:chr29:30440803-30441132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 112

               
               
               Conread position:610-944
               
               
               Cow position:chr29:30227402-30227079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):10, 97

               
               
               Conread position:611-948
               
               
               Cow position:chr29:28805634-28805961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):15, 34

               
               
               Conread position:611-950
               
               
               Cow position:chr29:27652758-27652434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):11, 96

               
               
               Conread position:612-950
               
               
               Cow position:chr29:21196776-21196445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):112, 19

               
               
               Conread position:613-950
               
               
               Cow position:chr29:3825848-3826173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):241, 53

               
               
               Conread position:614-855
               
               
               Cow position:chr29:22936145-22936385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):15, 91

               
               
               Conread position:617-848
               
               
               Cow position:chr29:6015001-6015233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):85, 90

               
               
               Conread position:618-871
               
               
               Cow position:chr29:21941479-21941731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):104, 89

               
               
               Conread position:618-900
               
               
               Cow position:chr29:12626099-12625816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):112, 87

               
               
               Conread position:618-927
               
               
               Cow position:chr29:25474800-25475117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:220
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):82, 98

               
               
               Conread position:618-940
               
               
               Cow position:chr29:13028318-13028647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):80, 23

               
               
               Conread position:618-940
               
               
               Cow position:chr29:23389676-23389369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):104, 96

               
               
               Conread position:619-875
               
               
               Cow position:chr29:847761-847508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):12, 66

               
               
               Conread position:620-944
               
               
               Cow position:chr29:28814097-28813771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):121, 86

               
               
               Conread position:620-951
               
               
               Cow position:chr29:20243927-20243598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):110, 86

               
               
               Conread position:621-941
               
               
               Cow position:chr29:5063031-5063341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):222, 25

               
               
               Conread position:622-928
               
               
               Cow position:chr29:45589705-45589417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):83, 41

               
               
               Conread position:624-941
               
               
               Cow position:chr29:11611725-11612045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):53, 46

               
               
               Conread position:624-941
               
               
               Cow position:chr29:22647736-22648045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):81, 47

               
               
               Conread position:626-813
               
               
               Cow position:chr29:11719852-11720039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):79, 96

               
               
               Conread position:628-959
               
               
               Cow position:chr29:1007706-1008036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):75, 120

               
               
               Conread position:629-959
               
               
               Cow position:chr29:5046543-5046870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:229
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):101, 77

               
               
               Conread position:630-949
               
               
               Cow position:chr29:5831144-5830811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:216
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:630-951
               
               
               Cow position:chr29:3584217-3583908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:213
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):93, 19

               
               
               Conread position:631-921
               
               
               Cow position:chr29:17168298-17168583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):91, 139

               
               
               Conread position:631-941
               
               
               Cow position:chr29:26477432-26477742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):75, 79

               
               
               Conread position:631-949
               
               
               Cow position:chr29:28674814-28674496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):83, 64

               
               
               Conread position:631-955
               
               
               Cow position:chr29:5520612-5520271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:238
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):74, 253

               
               
               Conread position:632-936
               
               
               Cow position:chr29:26778774-26779069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):45, 38

               
               
               Conread position:633-944
               
               
               Cow position:chr29:29183619-29183924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):109, 37

               
               
               Conread position:635-842
               
               
               Cow position:chr29:24578755-24578964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:640-956
               
               
               Cow position:chr29:8293014-8292700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):90, 66

               
               
               Conread position:643-960
               
               
               Cow position:chr29:3549518-3549821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:648-951
               
               
               Cow position:chr29:20770253-20770554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):63, 54

               
               
               Conread position:649-941
               
               
               Cow position:chr29:15947082-15947367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:209
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):73, 32

               
               
               Conread position:650-934
               
               
               Cow position:chr29:2263085-2262790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:208
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):42, 60

               
               
               Conread position:650-950
               
               
               Cow position:chr29:21665999-21666293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):73, 47

               
               
               Conread position:650-954
               
               
               Cow position:chr29:1614837-1615138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):49, 58

               
               
               Conread position:651-945
               
               
               Cow position:chr29:23813123-23812846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):74, 18

               
               
               Conread position:652-949
               
               
               Cow position:chr29:32894182-32894463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:653-950
               
               
               Cow position:chr29:23155142-23155442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):34, 17

               
               
               Conread position:653-952
               
               
               Cow position:chr29:16290645-16290932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:210
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):69, 19

               
               
               Conread position:655-935
               
               
               Cow position:chr29:7124732-7125014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):27, 54

               
               
               Conread position:657-949
               
               
               Cow position:chr29:18754947-18754656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):17, 54

               
               
               Conread position:658-941
               
               
               Cow position:chr29:20167342-20167621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):66, 51

               
               
               Conread position:658-958
               
               
               Cow position:chr29:22519210-22518904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):72, 56

               
               
               Conread position:659-875
               
               
               Cow position:chr29:13867291-13867075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):20, 12

               
               
               Conread position:659-949
               
               
               Cow position:chr29:36248956-36249244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):71, 9

               
               
               Conread position:663-876
               
               
               Cow position:chr29:7103480-7103693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):67, 43

               
               
               Conread position:664-941
               
               
               Cow position:chr29:22029032-22028763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):58, 106

               
               
               Conread position:665-918
               
               
               Cow position:chr29:22184185-22184436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):90, 45

               
               
               Conread position:671-949
               
               
               Cow position:chr29:36522431-36522147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):30, 36

               
               
               Conread position:673-915
               
               
               Cow position:chr29:38348096-38347855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):57, 33

               
               
               Conread position:673-927
               
               
               Cow position:chr29:36632927-36632676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):58, 24

               
               
               Conread position:673-935
               
               
               Cow position:chr29:44139311-44139053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):43, 29

               
               
               Conread position:673-941
               
               
               Cow position:chr29:18450200-18449940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:673-949
               
               
               Cow position:chr29:32656366-32656642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):49, 24

               
               
               Conread position:674-948
               
               
               Cow position:chr29:27926710-27926979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):8, 33

               
               
               Conread position:674-956
               
               
               Cow position:chr29:27911527-27911804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):8, 33

               
               
               Conread position:675-959
               
               
               Cow position:chr29:42630058-42630333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):55, 30

               
               
               Conread position:676-941
               
               
               Cow position:chr29:501137-501398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):187, 26

               
               
               Conread position:676-944
               
               
               Cow position:chr29:27827484-27827746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):165, 30

               
               
               Conread position:676-951
               
               
               Cow position:chr29:38396301-38396572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):92, 21

               
               
               Conread position:679-936
               
               
               Cow position:chr29:30681771-30681510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):181, 37

               
               
               Conread position:680-949
               
               
               Cow position:chr29:4492382-4492638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):154, 17

               
               
               Conread position:682-941
               
               
               Cow position:chr29:22167138-22166889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):41, 164

               
               
               Conread position:693-924
               
               
               Cow position:chr29:23825260-23825031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):18, 165

               
               
               Conread position:695-949
               
               
               Cow position:chr29:5568443-5568698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):35, 151

               
               
               Conread position:697-937
               
               
               Cow position:chr29:4070583-4070814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):33, 76

               
               
               Conread position:698-922
               
               
               Cow position:chr29:27524879-27524654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:701-929
               
               
               Cow position:chr29:29324459-29324234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):152, 20

               
               
               Conread position:703-941
               
               
               Cow position:chr29:41112916-41112692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:704-959
               
               
               Cow position:chr29:39038307-39038051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):17, 145

               
               
               Conread position:706-941
               
               
               Cow position:chr29:30827369-30827606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):7, 120

               
               
               Conread position:708-941
               
               
               Cow position:chr29:36357096-36357326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):22, 6

               
               
               Conread position:709-929
               
               
               Cow position:chr29:23115033-23114814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):33, 6

               
               
               Conread position:709-929
               
               
               Cow position:chr29:32197664-32197880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):14, 142

               
               
               Conread position:709-958
               
               
               Cow position:chr29:28066460-28066694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:710-930
               
               
               Cow position:chr29:17804503-17804717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):13, 89

               
               
               Conread position:710-944
               
               
               Cow position:chr29:22720682-22720446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):20, 5

               
               
               Conread position:710-944
               
               
               Cow position:chr29:24188097-24187862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:710-945
               
               
               Cow position:chr29:38858244-38858010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):59, 46

               
               
               Conread position:710-950
               
               
               Cow position:chr29:26602161-26602407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):20, 149

               
               
               Conread position:711-951
               
               
               Cow position:chr29:31981800-31982029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):19, 140

               
               
               Conread position:714-941
               
               
               Cow position:chr29:22735133-22734908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):9, 56

               
               
               Conread position:714-941
               
               
               Cow position:chr29:26540568-26540342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):9, 137

               
               
               Conread position:714-959
               
               
               Cow position:chr29:396385-396617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):16, 55

               
               
               Conread position:715-960
               
               
               Cow position:chr29:28420728-28420974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):7, 64

               
               
               Conread position:717-924
               
               
               Cow position:chr29:22723576-22723777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):6, 136

               
               
               Conread position:717-950
               
               
               Cow position:chr29:38754962-38754731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):71, 5

               
               
               Conread position:724-950
               
               
               Cow position:chr29:33321334-33321556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:725-918
               
               
               Cow position:chr29:29974030-29973838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:725-941
               
               
               Cow position:chr29:33511745-33511529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:725-948
               
               
               Cow position:chr29:16200494-16200271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):104, 96

               
               
               Conread position:726-941
               
               
               Cow position:chr29:9378622-9378833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:726-948
               
               
               Cow position:chr29:37438150-37437928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):157, 150

               
               
               Conread position:728-927
               
               
               Cow position:chr29:24365909-24365713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:729-941
               
               
               Cow position:chr29:36781316-36781112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:729-959
               
               
               Cow position:chr29:21018758-21018528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:730-947
               
               
               Cow position:chr29:19363700-19363913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):208, 53

               
               
               Conread position:731-925
               
               
               Cow position:chr29:28478317-28478510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:731-941
               
               
               Cow position:chr29:32656102-32655896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):59, 133

               
               
               Conread position:731-951
               
               
               Cow position:chr29:3292938-3293151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:731-958
               
               
               Cow position:chr29:22729558-22729783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):207, 44

               
               
               Conread position:733-951
               
               
               Cow position:chr29:23637686-23637466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:734-930
               
               
               Cow position:chr29:23913400-23913210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):100, 89

               
               
               Conread position:735-945
               
               
               Cow position:chr29:26411475-26411268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):108, 184

               
               
               Conread position:740-937
               
               
               Cow position:chr29:15796485-15796678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):126, 43

               
               
               Conread position:740-941
               
               
               Cow position:chr29:19420614-19420422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):143, 110

               
               
               Conread position:740-948
               
               
               Cow position:chr29:15797951-15798157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):126, 130

               
               
               Conread position:741-959
               
               
               Cow position:chr29:32713161-32713380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):40, 82

               
               
               Conread position:742-949
               
               
               Cow position:chr29:26211053-26211259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:745-937
               
               
               Cow position:chr29:26539239-26539425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:747-956
               
               
               Cow position:chr29:5953853-5953643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):21, 27

               
               
               Conread position:748-941
               
               
               Cow position:chr29:4648202-4648014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:748-949
               
               
               Cow position:chr29:30021126-30021327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:757-949
               
               
               Cow position:chr29:40351059-40350873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):179, 18

               
               
               Conread position:757-952
               
               
               Cow position:chr29:32215725-32215914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):186, 18

               
               
               Conread position:771-940
               
               
               Cow position:chr29:33143324-33143159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:772-939
               
               
               Cow position:chr29:23142303-23142136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:772-941
               
               
               Cow position:chr29:7414532-7414692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):21, 96

               
               
               Conread position:773-929
               
               
               Cow position:chr29:34359789-34359640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:773-948
               
               
               Cow position:chr29:22577147-22576973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:773-959
               
               
               Cow position:chr29:936239-936419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:773-959
               
               
               Cow position:chr29:8163797-8163612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):166, 0

               
               
               Conread position:773-960
               
               
               Cow position:chr29:38732185-38732373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):167, 0

               
               
               Conread position:774-948
               
               
               Cow position:chr29:685140-684973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:774-949
               
               
               Cow position:chr29:11081363-11081186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):165, 0

               
               
               Conread position:774-959
               
               
               Cow position:chr29:11894731-11894917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):166, 0

               
               
               Conread position:774-959
               
               
               Cow position:chr29:23678742-23678916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):65, 72

               
               
               Conread position:775-937
               
               
               Cow position:chr29:41422877-41422715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:775-937
               
               
               Cow position:chr29:43088342-43088500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:775-939
               
               
               Cow position:chr29:42404981-42405145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:775-940
               
               
               Cow position:chr29:24660720-24660874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:775-941
               
               
               Cow position:chr29:34274345-34274176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):99, 73

               
               
               Conread position:775-945
               
               
               Cow position:chr29:629572-629739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):84, 125

               
               
               Conread position:775-945
               
               
               Cow position:chr29:4484130-4484299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:775-945
               
               
               Cow position:chr29:16561736-16561572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):126, 43

               
               
               Conread position:775-948
               
               
               Cow position:chr29:19187060-19187231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:775-949
               
               
               Cow position:chr29:14828194-14828023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:775-950
               
               
               Cow position:chr29:2414718-2414548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):165, 147

               
               
               Conread position:775-951
               
               
               Cow position:chr29:16735258-16735434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:775-955
               
               
               Cow position:chr29:4441170-4440991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):167, 43

               
               
               Conread position:775-958
               
               
               Cow position:chr29:14746814-14746993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:776-941
               
               
               Cow position:chr29:21645347-21645515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):95, 29

               
               
               Conread position:776-949
               
               
               Cow position:chr29:6517264-6517434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:776-956
               
               
               Cow position:chr29:8798980-8798799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):93, 152

               
               
               Conread position:780-941
               
               
               Cow position:chr29:7040833-7040670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):21, 26

               
               
               Conread position:780-955
               
               
               Cow position:chr29:22019148-22018972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):149, 89

               
               
               Conread position:781-941
               
               
               Cow position:chr29:14576899-14577055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:781-960
               
               
               Cow position:chr29:30294833-30294656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):165, 0

               
               
               Conread position:782-950
               
               
               Cow position:chr29:4492010-4491846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:782-951
               
               
               Cow position:chr29:24604937-24605104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:784-955
               
               
               Cow position:chr29:36546739-36546569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):155, 80

               
               
               Conread position:787-945
               
               
               Cow position:chr29:23735042-23734884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:787-952
               
               
               Cow position:chr29:41094163-41094325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:789-960
               
               
               Cow position:chr29:24119452-24119283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):157, 0

               
               
               Conread position:793-951
               
               
               Cow position:chr29:35281516-35281679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):57, 156

               
               
               Conread position:798-956
               
               
               Cow position:chr29:4741334-4741176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:531-959
               
               
               Cow position:chr3:59040336-59040763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:287
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):17, 40

               
               
               Conread position:538-959
               
               
               Cow position:chr3:59718624-59719043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:275
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):224, 54

               
               
               Conread position:539-951
               
               
               Cow position:chr3:75107574-75107959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:278
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):47, 37

               
               
               Conread position:542-697
               
               
               Cow position:chr3:49140255-49140105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:547-767
               
               
               Cow position:chr3:16362952-16362731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):46, 7

               
               
               Conread position:547-944
               
               
               Cow position:chr3:59649044-59649431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:270
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):176, 7

               
               
               Conread position:549-875
               
               
               Cow position:chr3:35299460-35299777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):26, 7

               
               
               Conread position:552-941
               
               
               Cow position:chr3:24872510-24872867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:264
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:556-941
               
               
               Cow position:chr3:60264916-60264547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:253
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):158, 14

               
               
               Conread position:557-925
               
               
               Cow position:chr3:68627886-68627528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:251
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):15, 69

               
               
               Conread position:557-949
               
               
               Cow position:chr3:11254361-11253982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 5

               
               
               Conread position:562-766
               
               
               Cow position:chr3:54959986-54960192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):13, 7

               
               
               Conread position:562-940
               
               
               Cow position:chr3:16333602-16333979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:258
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):13, 7

               
               
               Conread position:563-951
               
               
               Cow position:chr3:75853528-75853150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:270
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):29, 62

               
               
               Conread position:564-725
               
               
               Cow position:chr3:78739663-78739819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:565-927
               
               
               Cow position:chr3:70334900-70334531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 151

               
               
               Conread position:566-720
               
               
               Cow position:chr3:82359849-82359999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):27, 82

               
               
               Conread position:566-752
               
               
               Cow position:chr3:57554044-57553859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):36, 60

               
               
               Conread position:566-855
               
               
               Cow position:chr3:55272239-55271953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):27, 40

               
               
               Conread position:566-860
               
               
               Cow position:chr3:14626348-14626053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):175, 21

               
               
               Conread position:566-869
               
               
               Cow position:chr3:57624271-57624570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):51, 19

               
               
               Conread position:566-872
               
               
               Cow position:chr3:43571544-43571857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):39, 88

               
               
               Conread position:566-874
               
               
               Cow position:chr3:14263196-14263503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):28, 148

               
               
               Conread position:566-929
               
               
               Cow position:chr3:66900938-66900564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 110

               
               
               Conread position:566-933
               
               
               Cow position:chr3:38863921-38864285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:254
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):26, 58

               
               
               Conread position:566-941
               
               
               Cow position:chr3:29596198-29596570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:256
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):37, 78

               
               
               Conread position:566-944
               
               
               Cow position:chr3:49382756-49383149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:266
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):55, 30

               
               
               Conread position:566-949
               
               
               Cow position:chr3:80740376-80740736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):156, 19

               
               
               Conread position:566-955
               
               
               Cow position:chr3:59630695-59630318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:260
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):30, 11

               
               
               Conread position:566-958
               
               
               Cow position:chr3:57577498-57577888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:269
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):29, 108

               
               
               Conread position:568-736
               
               
               Cow position:chr3:34294475-34294309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):144, 21

               
               
               Conread position:568-840
               
               
               Cow position:chr3:61840086-61840352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):154, 54

               
               
               Conread position:568-900
               
               
               Cow position:chr3:45647940-45648266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):7, 57

               
               
               Conread position:569-700
               
               
               Cow position:chr3:48578646-48578771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:104
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:569-813
               
               
               Cow position:chr3:65800404-65800635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):23, 55

               
               
               Conread position:569-881
               
               
               Cow position:chr3:48296516-48296817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):16, 61

               
               
               Conread position:569-941
               
               
               Cow position:chr3:77365489-77365117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:253
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):149, 285

               
               
               Conread position:569-942
               
               
               Cow position:chr3:75479814-75480174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:259
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):23, 28

               
               
               Conread position:569-945
               
               
               Cow position:chr3:56476489-56476853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 55

               
               
               Conread position:569-949
               
               
               Cow position:chr3:30179890-30180266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 140

               
               
               Conread position:569-956
               
               
               Cow position:chr3:15052139-15051761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 21

               
               
               Conread position:571-941
               
               
               Cow position:chr3:15751911-15751548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:250
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):21, 210

               
               
               Conread position:572-853
               
               
               Cow position:chr3:58767082-58767353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):15, 21

               
               
               Conread position:572-939
               
               
               Cow position:chr3:54506523-54506879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 13

               
               
               Conread position:572-941
               
               
               Cow position:chr3:81039935-81039571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:249
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):27, 11

               
               
               Conread position:572-951
               
               
               Cow position:chr3:20802818-20802455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 105

               
               
               Conread position:574-750
               
               
               Cow position:chr3:3062370-3062555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):31, 22

               
               
               Conread position:574-752
               
               
               Cow position:chr3:39328208-39328389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:574-842
               
               
               Cow position:chr3:79292642-79292907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):19, 88

               
               
               Conread position:574-855
               
               
               Cow position:chr3:34270729-34271006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):48, 19

               
               
               Conread position:574-855
               
               
               Cow position:chr3:38691598-38691315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):20, 137

               
               
               Conread position:574-866
               
               
               Cow position:chr3:4050007-4050296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):47, 133

               
               
               Conread position:574-875
               
               
               Cow position:chr3:59621830-59621536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:205
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):19, 31

               
               
               Conread position:574-875
               
               
               Cow position:chr3:80581479-80581767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:574-879
               
               
               Cow position:chr3:50614451-50614757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):19, 51

               
               
               Conread position:574-941
               
               
               Cow position:chr3:76713510-76713137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:260
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):53, 22

               
               
               Conread position:574-945
               
               
               Cow position:chr3:17134151-17134510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:253
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):23, 54

               
               
               Conread position:574-949
               
               
               Cow position:chr3:15954269-15953899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 17

               
               
               Conread position:574-955
               
               
               Cow position:chr3:15229011-15228651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:268
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):18, 102

               
               
               Conread position:575-949
               
               
               Cow position:chr3:48252699-48253062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 109

               
               
               Conread position:575-949
               
               
               Cow position:chr3:75158174-75158537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:258
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):17, 49

               
               
               Conread position:576-692
               
               
               Cow position:chr3:61361222-61361338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:96
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):50, 5

               
               
               Conread position:576-718
               
               
               Cow position:chr3:54770824-54770967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):14, 110

               
               
               Conread position:576-809
               
               
               Cow position:chr3:34937659-34937890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):16, 53

               
               
               Conread position:576-875
               
               
               Cow position:chr3:12712103-12711805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):17, 147

               
               
               Conread position:576-928
               
               
               Cow position:chr3:74119622-74119268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):50, 11

               
               
               Conread position:576-935
               
               
               Cow position:chr3:29891594-29891237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:241
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):148, 14

               
               
               Conread position:576-937
               
               
               Cow position:chr3:8060945-8061291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 9

               
               
               Conread position:576-939
               
               
               Cow position:chr3:59597001-59597346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):16, 24

               
               
               Conread position:576-941
               
               
               Cow position:chr3:5365491-5365840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:253
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):43, 11

               
               
               Conread position:576-941
               
               
               Cow position:chr3:49119207-49118855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):278, 11

               
               
               Conread position:576-944
               
               
               Cow position:chr3:31077911-31077547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:247
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):10, 16

               
               
               Conread position:576-949
               
               
               Cow position:chr3:210135-210505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 12

               
               
               Conread position:576-951
               
               
               Cow position:chr3:7331297-7330952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:264
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):17, 48

               
               
               Conread position:576-952
               
               
               Cow position:chr3:55733761-55734144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:252
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):73, 15

               
               
               Conread position:576-957
               
               
               Cow position:chr3:70676044-70676424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:259
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):154, 15

               
               
               Conread position:576-959
               
               
               Cow position:chr3:81087804-81087444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:265
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):249, 20

               
               
               Conread position:576-960
               
               
               Cow position:chr3:26981880-26982243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:258
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):16, 114

               
               
               Conread position:577-693
               
               
               Cow position:chr3:56704727-56704611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:94
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):15, 50

               
               
               Conread position:577-751
               
               
               Cow position:chr3:49731821-49731651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):49, 11

               
               
               Conread position:577-754
               
               
               Cow position:chr3:27544516-27544343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):31, 20

               
               
               Conread position:577-831
               
               
               Cow position:chr3:23445077-23444820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):11, 94

               
               
               Conread position:577-842
               
               
               Cow position:chr3:58969084-58968824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):15, 48

               
               
               Conread position:577-848
               
               
               Cow position:chr3:17895664-17895933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):191, 49

               
               
               Conread position:577-853
               
               
               Cow position:chr3:116014-116280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):15, 73

               
               
               Conread position:577-860
               
               
               Cow position:chr3:70401719-70401993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):15, 51

               
               
               Conread position:577-928
               
               
               Cow position:chr3:7566602-7566259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 66

               
               
               Conread position:577-941
               
               
               Cow position:chr3:65058519-65058874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 78

               
               
               Conread position:577-941
               
               
               Cow position:chr3:67930365-67929995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:260
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):15, 46

               
               
               Conread position:577-950
               
               
               Cow position:chr3:18066952-18067315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 48

               
               
               Conread position:577-951
               
               
               Cow position:chr3:30463349-30462991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 52

               
               
               Conread position:578-832
               
               
               Cow position:chr3:26553898-26553646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):15, 126

               
               
               Conread position:578-842
               
               
               Cow position:chr3:56556-56298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):176, 49

               
               
               Conread position:578-848
               
               
               Cow position:chr3:59101648-59101912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):148, 14

               
               
               Conread position:578-875
               
               
               Cow position:chr3:70899714-70900002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:203
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):144, 45

               
               
               Conread position:578-927
               
               
               Cow position:chr3:48241435-48241768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 46

               
               
               Conread position:578-937
               
               
               Cow position:chr3:61169619-61169981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:250
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):123, 54

               
               
               Conread position:578-950
               
               
               Cow position:chr3:23876812-23877183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:250
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):15, 118

               
               
               Conread position:579-930
               
               
               Cow position:chr3:55434144-55434495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:242
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):14, 121

               
               
               Conread position:579-931
               
               
               Cow position:chr3:59000929-59000598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 47

               
               
               Conread position:579-941
               
               
               Cow position:chr3:2025004-2025378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 101

               
               
               Conread position:579-941
               
               
               Cow position:chr3:29360317-29359989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:251
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):319, 9

               
               
               Conread position:579-941
               
               
               Cow position:chr3:68303151-68303493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:250
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):13, 65

               
               
               Conread position:579-949
               
               
               Cow position:chr3:55319084-55318715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 47

               
               
               Conread position:579-959
               
               
               Cow position:chr3:30940635-30940998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:254
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):188, 44

               
               
               Conread position:579-960
               
               
               Cow position:chr3:59610901-59610527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 11

               
               
               Conread position:580-882
               
               
               Cow position:chr3:17935114-17934818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):13, 45

               
               
               Conread position:580-941
               
               
               Cow position:chr3:2648689-2648333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):44, 7

               
               
               Conread position:580-951
               
               
               Cow position:chr3:10958419-10958059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:254
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):125, 18

               
               
               Conread position:581-736
               
               
               Cow position:chr3:27212183-27212337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):142, 42

               
               
               Conread position:581-796
               
               
               Cow position:chr3:35005602-35005809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):6, 17

               
               
               Conread position:581-802
               
               
               Cow position:chr3:66375137-66375358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):11, 67

               
               
               Conread position:581-812
               
               
               Cow position:chr3:5097024-5097256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):11, 126

               
               
               Conread position:581-838
               
               
               Cow position:chr3:3638007-3638253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):11, 124

               
               
               Conread position:581-855
               
               
               Cow position:chr3:42423510-42423236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):125, 7

               
               
               Conread position:581-859
               
               
               Cow position:chr3:53112994-53113271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:205
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):11, 44

               
               
               Conread position:581-866
               
               
               Cow position:chr3:57760319-57760601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):11, 124

               
               
               Conread position:581-878
               
               
               Cow position:chr3:26874412-26874706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:209
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):57, 22

               
               
               Conread position:581-912
               
               
               Cow position:chr3:44101790-44102113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:233
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):11, 127

               
               
               Conread position:581-929
               
               
               Cow position:chr3:2036119-2036467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):11, 117

               
               
               Conread position:581-937
               
               
               Cow position:chr3:54434796-54435139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:247
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):11, 46

               
               
               Conread position:581-941
               
               
               Cow position:chr3:13302027-13301673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):356, 114

               
               
               Conread position:581-941
               
               
               Cow position:chr3:14601892-14601537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:256
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):11, 128

               
               
               Conread position:581-941
               
               
               Cow position:chr3:48362906-48363244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):11, 33

               
               
               Conread position:581-941
               
               
               Cow position:chr3:53790716-53790367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:243
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:581-941
               
               
               Cow position:chr3:70762302-70761948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:581-941
               
               
               Cow position:chr3:75570627-75570271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:241
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):7, 89

               
               
               Conread position:581-949
               
               
               Cow position:chr3:39970047-39969680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:581-950
               
               
               Cow position:chr3:65236844-65237206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):11, 110

               
               
               Conread position:581-951
               
               
               Cow position:chr3:63269046-63269419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):11, 31

               
               
               Conread position:581-958
               
               
               Cow position:chr3:77188259-77188630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:256
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):142, 87

               
               
               Conread position:581-959
               
               
               Cow position:chr3:27697158-27696773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 116

               
               
               Conread position:581-959
               
               
               Cow position:chr3:51578498-51578130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 44

               
               
               Conread position:581-959
               
               
               Cow position:chr3:55712250-55712623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 284

               
               
               Conread position:581-960
               
               
               Cow position:chr3:53318224-53318605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 117

               
               
               Conread position:581-960
               
               
               Cow position:chr3:53909934-53910300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:266
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):7, 65

               
               
               Conread position:583-941
               
               
               Cow position:chr3:52652251-52651905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:250
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):146, 42

               
               
               Conread position:584-854
               
               
               Cow position:chr3:59884247-59883978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):118, 11

               
               
               Conread position:584-952
               
               
               Cow position:chr3:73467447-73467812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:257
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):37, 60

               
               
               Conread position:585-695
               
               
               Cow position:chr3:83921028-83921132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:92
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:585-703
               
               
               Cow position:chr3:22872226-22872104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:585-753
               
               
               Cow position:chr3:59885210-59885383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:585-766
               
               
               Cow position:chr3:55106613-55106436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):41, 91

               
               
               Conread position:585-812
               
               
               Cow position:chr3:31047125-31046903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):130, 38

               
               
               Conread position:585-824
               
               
               Cow position:chr3:75711137-75711367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:585-840
               
               
               Cow position:chr3:81371473-81371726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):136, 34

               
               
               Conread position:585-842
               
               
               Cow position:chr3:29887596-29887341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):138, 38

               
               
               Conread position:585-846
               
               
               Cow position:chr3:71430382-71430118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):136, 129

               
               
               Conread position:585-858
               
               
               Cow position:chr3:10347181-10347450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):137, 38

               
               
               Conread position:585-894
               
               
               Cow position:chr3:28898397-28898091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):267, 123

               
               
               Conread position:585-937
               
               
               Cow position:chr3:53150155-53150504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:253
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):138, 22

               
               
               Conread position:585-939
               
               
               Cow position:chr3:79094222-79093888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):112, 38

               
               
               Conread position:585-939
               
               
               Cow position:chr3:82020014-82019669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:225
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):31, 39

               
               
               Conread position:585-941
               
               
               Cow position:chr3:6182374-6182058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:244
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:585-941
               
               
               Cow position:chr3:13353187-13353539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:229
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):136, 38

               
               
               Conread position:585-941
               
               
               Cow position:chr3:15158867-15159204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:254
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):73, 38

               
               
               Conread position:585-941
               
               
               Cow position:chr3:36375718-36375363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 81

               
               
               Conread position:585-944
               
               
               Cow position:chr3:80973183-80973529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):145, 58

               
               
               Conread position:585-948
               
               
               Cow position:chr3:18426873-18426518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):273, 28

               
               
               Conread position:585-949
               
               
               Cow position:chr3:53836859-53836527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:256
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):41, 22

               
               
               Conread position:585-950
               
               
               Cow position:chr3:54782191-54781807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:270
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):67, 38

               
               
               Conread position:585-950
               
               
               Cow position:chr3:54903398-54903751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:239
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):41, 112

               
               
               Conread position:585-951
               
               
               Cow position:chr3:42434508-42434141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:249
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):89, 84

               
               
               Conread position:585-951
               
               
               Cow position:chr3:75050799-75050438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:256
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):37, 11

               
               
               Conread position:585-951
               
               
               Cow position:chr3:76922837-76922489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:256
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):135, 38

               
               
               Conread position:585-956
               
               
               Cow position:chr3:78946007-78945631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:268
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):137, 39

               
               
               Conread position:585-958
               
               
               Cow position:chr3:53270654-53271029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):352, 117

               
               
               Conread position:585-958
               
               
               Cow position:chr3:68647990-68648369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:257
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):139, 125

               
               
               Conread position:585-958
               
               
               Cow position:chr3:78443733-78443379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:585-958
               
               
               Cow position:chr3:83490909-83491272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:255
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):34, 123

               
               
               Conread position:585-959
               
               
               Cow position:chr3:72473737-72474114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 129

               
               
               Conread position:586-794
               
               
               Cow position:chr3:33698552-33698762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):39, 112

               
               
               Conread position:586-952
               
               
               Cow position:chr3:65968985-65969360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:588-951
               
               
               Cow position:chr3:59034860-59035228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 112

               
               
               Conread position:589-761
               
               
               Cow position:chr3:23037800-23037624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:589-944
               
               
               Cow position:chr3:81439666-81440018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):135, 9

               
               
               Conread position:590-941
               
               
               Cow position:chr3:18686738-18687076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:238
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):178, 34

               
               
               Conread position:591-736
               
               
               Cow position:chr3:4087336-4087186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:591-736
               
               
               Cow position:chr3:39171651-39171507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):135, 33

               
               
               Conread position:591-736
               
               
               Cow position:chr3:67161772-67161917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):31, 118

               
               
               Conread position:591-743
               
               
               Cow position:chr3:17952487-17952638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):136, 115

               
               
               Conread position:591-751
               
               
               Cow position:chr3:9843419-9843575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):99, 32

               
               
               Conread position:591-752
               
               
               Cow position:chr3:25059909-25060069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):111, 118

               
               
               Conread position:591-753
               
               
               Cow position:chr3:3164664-3164505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):38, 33

               
               
               Conread position:591-753
               
               
               Cow position:chr3:41367152-41366990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):111, 33

               
               
               Conread position:591-753
               
               
               Cow position:chr3:48269699-48269855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):131, 33

               
               
               Conread position:591-753
               
               
               Cow position:chr3:59271373-59271533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):131, 34

               
               
               Conread position:591-753
               
               
               Cow position:chr3:63861065-63860899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):27, 84

               
               
               Conread position:591-754
               
               
               Cow position:chr3:78201103-78201259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-762
               
               
               Cow position:chr3:73590167-73589996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):111, 32

               
               
               Conread position:591-766
               
               
               Cow position:chr3:69849674-69849504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):89, 35

               
               
               Conread position:591-766
               
               
               Cow position:chr3:84000444-84000616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):131, 111

               
               
               Conread position:591-793
               
               
               Cow position:chr3:42177990-42178183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):35, 12

               
               
               Conread position:591-803
               
               
               Cow position:chr3:19708273-19708068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:591-805
               
               
               Cow position:chr3:81359281-81359065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):28, 100

               
               
               Conread position:591-807
               
               
               Cow position:chr3:4457240-4457027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):35, 54

               
               
               Conread position:591-813
               
               
               Cow position:chr3:7940724-7940507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):133, 32

               
               
               Conread position:591-816
               
               
               Cow position:chr3:73759684-73759464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):96, 33

               
               
               Conread position:591-824
               
               
               Cow position:chr3:11711789-11712026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):35, 119

               
               
               Conread position:591-842
               
               
               Cow position:chr3:525182-525425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-842
               
               
               Cow position:chr3:72675924-72676170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):131, 33

               
               
               Conread position:591-846
               
               
               Cow position:chr3:74502490-74502242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):35, 98

               
               
               Conread position:591-846
               
               
               Cow position:chr3:78896481-78896729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):131, 17

               
               
               Conread position:591-847
               
               
               Cow position:chr3:73764364-73764116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):79, 64

               
               
               Conread position:591-848
               
               
               Cow position:chr3:34669896-34669648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:591-848
               
               
               Cow position:chr3:38347034-38347275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):36, 12

               
               
               Conread position:591-850
               
               
               Cow position:chr3:28908370-28908116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-854
               
               
               Cow position:chr3:26960759-26960497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:591-855
               
               
               Cow position:chr3:24935203-24935456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:591-855
               
               
               Cow position:chr3:49650217-49650480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 104

               
               
               Conread position:591-855
               
               
               Cow position:chr3:60265410-60265162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):64, 28

               
               
               Conread position:591-859
               
               
               Cow position:chr3:2216195-2216464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):29, 80

               
               
               Conread position:591-866
               
               
               Cow position:chr3:73443255-73442993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:192
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-867
               
               
               Cow position:chr3:80053712-80053440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):36, 119

               
               
               Conread position:591-871
               
               
               Cow position:chr3:67704374-67704652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-874
               
               
               Cow position:chr3:66884109-66883834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):135, 102

               
               
               Conread position:591-875
               
               
               Cow position:chr3:2680348-2680621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):139, 115

               
               
               Conread position:591-875
               
               
               Cow position:chr3:46901028-46901304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):27, 39

               
               
               Conread position:591-878
               
               
               Cow position:chr3:20678003-20677729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):61, 32

               
               
               Conread position:591-879
               
               
               Cow position:chr3:59588351-59588629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):271, 61

               
               
               Conread position:591-889
               
               
               Cow position:chr3:68583171-68582874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):135, 93

               
               
               Conread position:591-894
               
               
               Cow position:chr3:81471269-81470964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):29, 98

               
               
               Conread position:591-899
               
               
               Cow position:chr3:70565906-70565601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:216
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):130, 32

               
               
               Conread position:591-909
               
               
               Cow position:chr3:30055617-30055306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):28, 83

               
               
               Conread position:591-922
               
               
               Cow position:chr3:61857332-61857665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):35, 83

               
               
               Conread position:591-926
               
               
               Cow position:chr3:11987159-11987488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:236
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):86, 77

               
               
               Conread position:591-929
               
               
               Cow position:chr3:74079807-74079475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:234
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):130, 32

               
               
               Conread position:591-930
               
               
               Cow position:chr3:57273898-57274222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:241
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):198, 32

               
               
               Conread position:591-934
               
               
               Cow position:chr3:51234265-51233936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:591-935
               
               
               Cow position:chr3:25944913-25945264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 241

               
               
               Conread position:591-935
               
               
               Cow position:chr3:58540697-58540348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):55, 158

               
               
               Conread position:591-936
               
               
               Cow position:chr3:7337938-7337617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:237
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):129, 38

               
               
               Conread position:591-937
               
               
               Cow position:chr3:24616005-24615671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):235, 33

               
               
               Conread position:591-937
               
               
               Cow position:chr3:26903947-26904270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):131, 77

               
               
               Conread position:591-937
               
               
               Cow position:chr3:54100891-54100542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:241
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):18, 112

               
               
               Conread position:591-937
               
               
               Cow position:chr3:68146011-68145684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:591-937
               
               
               Cow position:chr3:71161626-71161959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:231
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):123, 174

               
               
               Conread position:591-938
               
               
               Cow position:chr3:45279296-45279641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):35, 89

               
               
               Conread position:591-939
               
               
               Cow position:chr3:64281100-64280765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:243
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):131, 26

               
               
               Conread position:591-940
               
               
               Cow position:chr3:49327773-49328108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:229
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):131, 33

               
               
               Conread position:591-940
               
               
               Cow position:chr3:65413448-65413092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 37

               
               
               Conread position:591-940
               
               
               Cow position:chr3:74234028-74234355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):112, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr3:2393133-2392794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 115

               
               
               Conread position:591-941
               
               
               Cow position:chr3:2506645-2506301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 113

               
               
               Conread position:591-941
               
               
               Cow position:chr3:2518701-2518366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):311, 108

               
               
               Conread position:591-941
               
               
               Cow position:chr3:3556381-3556723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:249
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):34, 109

               
               
               Conread position:591-941
               
               
               Cow position:chr3:3985159-3985492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):139, 33

               
               
               Conread position:591-941
               
               
               Cow position:chr3:8393182-8393514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):131, 89

               
               
               Conread position:591-941
               
               
               Cow position:chr3:9641397-9641730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:240
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):132, 33

               
               
               Conread position:591-941
               
               
               Cow position:chr3:11063214-11063537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:246
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):337, 33

               
               
               Conread position:591-941
               
               
               Cow position:chr3:17937003-17936672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):131, 28

               
               
               Conread position:591-941
               
               
               Cow position:chr3:17957294-17957636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 106

               
               
               Conread position:591-941
               
               
               Cow position:chr3:20842024-20841704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:249
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):140, 55

               
               
               Conread position:591-941
               
               
               Cow position:chr3:31419532-31419870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:242
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):32, 106

               
               
               Conread position:591-941
               
               
               Cow position:chr3:50768514-50768854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):133, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr3:53095104-53094749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):35, 112

               
               
               Conread position:591-941
               
               
               Cow position:chr3:56582675-56583023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):128, 45

               
               
               Conread position:591-941
               
               
               Cow position:chr3:62046494-62046846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr3:68708172-68707847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:248
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-941
               
               
               Cow position:chr3:68881280-68880956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-941
               
               
               Cow position:chr3:71478423-71478767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):110, 123

               
               
               Conread position:591-941
               
               
               Cow position:chr3:75080602-75080927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:242
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-941
               
               
               Cow position:chr3:79092563-79092209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):35, 106

               
               
               Conread position:591-941
               
               
               Cow position:chr3:80071958-80072318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:240
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):131, 33

               
               
               Conread position:591-942
               
               
               Cow position:chr3:44932344-44932688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-943
               
               
               Cow position:chr3:53221846-53222189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 32

               
               
               Conread position:591-944
               
               
               Cow position:chr3:14725133-14725494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:242
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):88, 79

               
               
               Conread position:591-944
               
               
               Cow position:chr3:36570214-36569860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:241
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):133, 79

               
               
               Conread position:591-944
               
               
               Cow position:chr3:55970337-55970693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 77

               
               
               Conread position:591-944
               
               
               Cow position:chr3:73394952-73395293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:591-945
               
               
               Cow position:chr3:33253049-33252713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):28, 112

               
               
               Conread position:591-945
               
               
               Cow position:chr3:78092674-78092332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:243
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):134, 32

               
               
               Conread position:591-947
               
               
               Cow position:chr3:1830737-1830393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:591-949
               
               
               Cow position:chr3:8591526-8591185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):32, 55

               
               
               Conread position:591-949
               
               
               Cow position:chr3:19198819-19199170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:247
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):83, 33

               
               
               Conread position:591-949
               
               
               Cow position:chr3:30009078-30008723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):35, 54

               
               
               Conread position:591-949
               
               
               Cow position:chr3:32310604-32310230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):35, 130

               
               
               Conread position:591-949
               
               
               Cow position:chr3:48810805-48810454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:242
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):265, 33

               
               
               Conread position:591-949
               
               
               Cow position:chr3:48852132-48851784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:242
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):35, 98

               
               
               Conread position:591-949
               
               
               Cow position:chr3:49482879-49482531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 108

               
               
               Conread position:591-949
               
               
               Cow position:chr3:53384452-53384096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 52

               
               
               Conread position:591-949
               
               
               Cow position:chr3:53592865-53592503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:245
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):31, 298

               
               
               Conread position:591-949
               
               
               Cow position:chr3:69144538-69144879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:243
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):42, 6

               
               
               Conread position:591-950
               
               
               Cow position:chr3:2674861-2675217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 12

               
               
               Conread position:591-950
               
               
               Cow position:chr3:54374029-54373672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 107

               
               
               Conread position:591-950
               
               
               Cow position:chr3:78077025-78077375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-951
               
               
               Cow position:chr3:7763497-7763843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:249
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):83, 50

               
               
               Conread position:591-951
               
               
               Cow position:chr3:14552710-14553058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:248
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):348, 33

               
               
               Conread position:591-951
               
               
               Cow position:chr3:17456433-17456082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:242
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):133, 65

               
               
               Conread position:591-951
               
               
               Cow position:chr3:27274363-27274714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 32

               
               
               Conread position:591-951
               
               
               Cow position:chr3:44837549-44837181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:255
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):36, 57

               
               
               Conread position:591-951
               
               
               Cow position:chr3:53739354-53738997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:241
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-951
               
               
               Cow position:chr3:57764059-57764399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):347, 32

               
               
               Conread position:591-951
               
               
               Cow position:chr3:83700038-83699683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):122, 33

               
               
               Conread position:591-955
               
               
               Cow position:chr3:23169234-23168877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-955
               
               
               Cow position:chr3:43233339-43233692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 93

               
               
               Conread position:591-955
               
               
               Cow position:chr3:70895882-70896224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:254
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):184, 32

               
               
               Conread position:591-955
               
               
               Cow position:chr3:75687607-75687248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:249
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):106, 114

               
               
               Conread position:591-956
               
               
               Cow position:chr3:23105534-23105174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:251
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):112, 32

               
               
               Conread position:591-956
               
               
               Cow position:chr3:32584985-32585343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-957
               
               
               Cow position:chr3:23471632-23471276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):113, 66

               
               
               Conread position:591-958
               
               
               Cow position:chr3:54945960-54946313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 32

               
               
               Conread position:591-959
               
               
               Cow position:chr3:19792724-19793091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 229

               
               
               Conread position:591-959
               
               
               Cow position:chr3:53429064-53428721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:250
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):349, 32

               
               
               Conread position:591-959
               
               
               Cow position:chr3:55819579-55819941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 227

               
               
               Conread position:591-959
               
               
               Cow position:chr3:61539632-61539991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):35, 121

               
               
               Conread position:591-960
               
               
               Cow position:chr3:9663340-9662973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):355, 69

               
               
               Conread position:591-960
               
               
               Cow position:chr3:45667519-45667148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:263
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):34, 16

               
               
               Conread position:591-960
               
               
               Cow position:chr3:53875927-53875567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):352, 33

               
               
               Conread position:591-960
               
               
               Cow position:chr3:60933248-60933612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:253
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):32, 57

               
               
               Conread position:592-753
               
               
               Cow position:chr3:61024471-61024311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):27, 18

               
               
               Conread position:592-755
               
               
               Cow position:chr3:81940088-81940250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):132, 116

               
               
               Conread position:592-761
               
               
               Cow position:chr3:28692601-28692431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):30, 92

               
               
               Conread position:592-800
               
               
               Cow position:chr3:49218482-49218284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):7, 33

               
               
               Conread position:592-806
               
               
               Cow position:chr3:36446884-36446675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):89, 32

               
               
               Conread position:592-807
               
               
               Cow position:chr3:79592052-79591847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):34, 116

               
               
               Conread position:592-820
               
               
               Cow position:chr3:66610010-66609787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:592-841
               
               
               Cow position:chr3:26920741-26920988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:592-842
               
               
               Cow position:chr3:55109782-55109534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):130, 15

               
               
               Conread position:592-842
               
               
               Cow position:chr3:83815956-83815709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):107, 20

               
               
               Conread position:592-850
               
               
               Cow position:chr3:55085350-55085083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):29, 127

               
               
               Conread position:592-853
               
               
               Cow position:chr3:30222018-30222281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):28, 120

               
               
               Conread position:592-859
               
               
               Cow position:chr3:52017591-52017867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):27, 105

               
               
               Conread position:592-872
               
               
               Cow position:chr3:81507279-81506999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):34, 74

               
               
               Conread position:592-874
               
               
               Cow position:chr3:55835992-55835709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):95, 31

               
               
               Conread position:592-874
               
               
               Cow position:chr3:61278741-61279019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):45, 115

               
               
               Conread position:592-875
               
               
               Cow position:chr3:17447775-17447503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):182, 15

               
               
               Conread position:592-887
               
               
               Cow position:chr3:53572920-53572628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):34, 53

               
               
               Conread position:592-896
               
               
               Cow position:chr3:31206705-31207009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):32, 94

               
               
               Conread position:592-918
               
               
               Cow position:chr3:18184903-18185229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:216
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):34, 112

               
               
               Conread position:592-936
               
               
               Cow position:chr3:55124445-55124115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):110, 42

               
               
               Conread position:592-939
               
               
               Cow position:chr3:52608020-52608354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:239
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):131, 31

               
               
               Conread position:592-941
               
               
               Cow position:chr3:31298323-31297982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:240
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):34, 108

               
               
               Conread position:592-941
               
               
               Cow position:chr3:45881742-45882074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:240
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:592-941
               
               
               Cow position:chr3:49461100-49460751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:239
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):36, 121

               
               
               Conread position:592-941
               
               
               Cow position:chr3:57754647-57754300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 89

               
               
               Conread position:592-941
               
               
               Cow position:chr3:58960756-58960418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):34, 108

               
               
               Conread position:592-941
               
               
               Cow position:chr3:63315968-63316302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:241
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):132, 66

               
               
               Conread position:592-941
               
               
               Cow position:chr3:70609459-70609800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:247
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):105, 31

               
               
               Conread position:592-941
               
               
               Cow position:chr3:79884654-79884305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):27, 47

               
               
               Conread position:592-944
               
               
               Cow position:chr3:55189923-55189572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 31

               
               
               Conread position:592-948
               
               
               Cow position:chr3:25690622-25690982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):27, 97

               
               
               Conread position:592-948
               
               
               Cow position:chr3:55947412-55947781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):34, 105

               
               
               Conread position:592-949
               
               
               Cow position:chr3:5044973-5044627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):34, 108

               
               
               Conread position:592-949
               
               
               Cow position:chr3:16547512-16547853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):32, 53

               
               
               Conread position:592-949
               
               
               Cow position:chr3:18144284-18143932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:244
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):125, 32

               
               
               Conread position:592-949
               
               
               Cow position:chr3:26489252-26488894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):34, 111

               
               
               Conread position:592-949
               
               
               Cow position:chr3:39661620-39661271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 81

               
               
               Conread position:592-949
               
               
               Cow position:chr3:67698112-67698462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:244
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):130, 33

               
               
               Conread position:592-949
               
               
               Cow position:chr3:83798006-83797640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):34, 107

               
               
               Conread position:592-950
               
               
               Cow position:chr3:26739587-26739240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:245
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):34, 105

               
               
               Conread position:592-951
               
               
               Cow position:chr3:13899616-13899269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:249
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):27, 116

               
               
               Conread position:592-951
               
               
               Cow position:chr3:14465874-14465529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:257
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):114, 30

               
               
               Conread position:592-951
               
               
               Cow position:chr3:71237989-71238334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:248
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):130, 31

               
               
               Conread position:592-956
               
               
               Cow position:chr3:15752798-15752443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:243
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):130, 31

               
               
               Conread position:592-959
               
               
               Cow position:chr3:3913618-3913248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:255
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):34, 127

               
               
               Conread position:592-959
               
               
               Cow position:chr3:67744790-67744451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):175, 32

               
               
               Conread position:592-960
               
               
               Cow position:chr3:188693-189070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:254
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):34, 345

               
               
               Conread position:592-960
               
               
               Cow position:chr3:4319547-4319913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 50

               
               
               Conread position:592-960
               
               
               Cow position:chr3:12705713-12705353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:249
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):130, 30

               
               
               Conread position:593-817
               
               
               Cow position:chr3:74878758-74878535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):26, 113

               
               
               Conread position:593-840
               
               
               Cow position:chr3:45647514-45647757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):130, 30

               
               
               Conread position:593-855
               
               
               Cow position:chr3:56059640-56059903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):63, 30

               
               
               Conread position:593-860
               
               
               Cow position:chr3:31850536-31850280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:593-869
               
               
               Cow position:chr3:82461011-82461285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):130, 117

               
               
               Conread position:593-878
               
               
               Cow position:chr3:49790977-49790695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):273, 102

               
               
               Conread position:593-912
               
               
               Cow position:chr3:72390916-72391234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:226
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):29, 109

               
               
               Conread position:593-929
               
               
               Cow position:chr3:53046825-53046495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 76

               
               
               Conread position:593-933
               
               
               Cow position:chr3:17222310-17221966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):123, 30

               
               
               Conread position:593-937
               
               
               Cow position:chr3:83215087-83215440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 114

               
               
               Conread position:593-941
               
               
               Cow position:chr3:17695169-17694827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:243
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):32, 56

               
               
               Conread position:593-941
               
               
               Cow position:chr3:26065837-26066162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:248
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):196, 30

               
               
               Conread position:593-941
               
               
               Cow position:chr3:67520344-67520001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:255
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):32, 12

               
               
               Conread position:593-941
               
               
               Cow position:chr3:83474580-83474929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:238
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):130, 19

               
               
               Conread position:593-946
               
               
               Cow position:chr3:23920596-23920246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 115

               
               
               Conread position:593-949
               
               
               Cow position:chr3:13890301-13890666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:246
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):33, 116

               
               
               Conread position:593-949
               
               
               Cow position:chr3:67929430-67929076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:238
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):26, 104

               
               
               Conread position:593-949
               
               
               Cow position:chr3:79825082-79824736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):28, 63

               
               
               Conread position:593-949
               
               
               Cow position:chr3:79902337-79902680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):33, 101

               
               
               Conread position:593-950
               
               
               Cow position:chr3:29813078-29813410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:245
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):129, 30

               
               
               Conread position:593-951
               
               
               Cow position:chr3:46006193-46005829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:255
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):76, 122

               
               
               Conread position:593-951
               
               
               Cow position:chr3:68616491-68616150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:249
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):123, 30

               
               
               Conread position:593-955
               
               
               Cow position:chr3:31309521-31309164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 100

               
               
               Conread position:593-959
               
               
               Cow position:chr3:22232818-22232475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):132, 30

               
               
               Conread position:593-959
               
               
               Cow position:chr3:38828600-38828945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:250
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):7, 100

               
               
               Conread position:593-959
               
               
               Cow position:chr3:68586855-68587213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 32

               
               
               Conread position:593-959
               
               
               Cow position:chr3:71246859-71247207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:245
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):32, 10

               
               
               Conread position:594-875
               
               
               Cow position:chr3:52863350-52863071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):236, 112

               
               
               Conread position:594-896
               
               
               Cow position:chr3:6689833-6690133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):32, 118

               
               
               Conread position:594-928
               
               
               Cow position:chr3:80564798-80565124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:234
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):114, 29

               
               
               Conread position:594-941
               
               
               Cow position:chr3:76268146-76267798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 8

               
               
               Conread position:594-949
               
               
               Cow position:chr3:74088335-74087994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:244
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):32, 65

               
               
               Conread position:595-855
               
               
               Cow position:chr3:26219214-26218961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:595-945
               
               
               Cow position:chr3:18459686-18459357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:247
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):344, 102

               
               
               Conread position:595-949
               
               
               Cow position:chr3:79220686-79221036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:235
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):30, 103

               
               
               Conread position:596-750
               
               
               Cow position:chr3:11019957-11020105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):127, 108

               
               
               Conread position:596-761
               
               
               Cow position:chr3:15859830-15859668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):126, 28

               
               
               Conread position:596-805
               
               
               Cow position:chr3:22820405-22820613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):106, 22

               
               
               Conread position:596-839
               
               
               Cow position:chr3:76015127-76015368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):120, 88

               
               
               Conread position:596-878
               
               
               Cow position:chr3:8393773-8394059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:186
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):109, 28

               
               
               Conread position:596-894
               
               
               Cow position:chr3:75046041-75045742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):123, 111

               
               
               Conread position:596-937
               
               
               Cow position:chr3:60597379-60597708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:238
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):128, 58

               
               
               Conread position:596-940
               
               
               Cow position:chr3:68156575-68156901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:239
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):196, 27

               
               
               Conread position:596-947
               
               
               Cow position:chr3:22676254-22675926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):134, 27

               
               
               Conread position:596-951
               
               
               Cow position:chr3:71497307-71496944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 59

               
               
               Conread position:597-736
               
               
               Cow position:chr3:27247351-27247216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):77, 6

               
               
               Conread position:597-820
               
               
               Cow position:chr3:75727747-75727525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):126, 98

               
               
               Conread position:597-866
               
               
               Cow position:chr3:15506289-15506552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):110, 26

               
               
               Conread position:597-894
               
               
               Cow position:chr3:73708886-73709175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:212
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):125, 29

               
               
               Conread position:597-929
               
               
               Cow position:chr3:69416946-69416615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):100, 112

               
               
               Conread position:597-941
               
               
               Cow position:chr3:58765239-58764911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):111, 26

               
               
               Conread position:597-949
               
               
               Cow position:chr3:15786404-15786751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):236, 97

               
               
               Conread position:597-959
               
               
               Cow position:chr3:17331560-17331914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:249
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):8, 101

               
               
               Conread position:598-875
               
               
               Cow position:chr3:53508460-53508719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:598-935
               
               
               Cow position:chr3:75238299-75238630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:238
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):166, 10

               
               
               Conread position:598-950
               
               
               Cow position:chr3:41129560-41129899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):21, 47

               
               
               Conread position:598-951
               
               
               Cow position:chr3:72342084-72342433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 13

               
               
               Conread position:599-857
               
               
               Cow position:chr3:62826779-62826525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):128, 24

               
               
               Conread position:599-932
               
               
               Cow position:chr3:74600951-74601278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):123, 25

               
               
               Conread position:600-805
               
               
               Cow position:chr3:2851054-2850857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):37, 55

               
               
               Conread position:600-842
               
               
               Cow position:chr3:5374175-5374407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):122, 23

               
               
               Conread position:600-889
               
               
               Cow position:chr3:79645603-79645304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:601-939
               
               
               Cow position:chr3:77581950-77582279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):114, 98

               
               
               Conread position:601-948
               
               
               Cow position:chr3:15153534-15153870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:240
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):111, 23

               
               
               Conread position:602-848
               
               
               Cow position:chr3:66292334-66292091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):122, 21

               
               
               Conread position:602-870
               
               
               Cow position:chr3:8733513-8733250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:188
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):47, 93

               
               
               Conread position:602-941
               
               
               Cow position:chr3:14801591-14801919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:235
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):21, 43

               
               
               Conread position:602-941
               
               
               Cow position:chr3:19585704-19586039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 21

               
               
               Conread position:602-944
               
               
               Cow position:chr3:28648348-28648680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):75, 60

               
               
               Conread position:602-948
               
               
               Cow position:chr3:71231238-71231580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 117

               
               
               Conread position:602-951
               
               
               Cow position:chr3:24468536-24468197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):337, 22

               
               
               Conread position:603-796
               
               
               Cow position:chr3:32184177-32183985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):119, 24

               
               
               Conread position:603-936
               
               
               Cow position:chr3:63179704-63180034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):23, 84

               
               
               Conread position:604-875
               
               
               Cow position:chr3:67544024-67543756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):119, 102

               
               
               Conread position:604-940
               
               
               Cow position:chr3:79271114-79270797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):119, 93

               
               
               Conread position:604-951
               
               
               Cow position:chr3:21112800-21112457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):23, 81

               
               
               Conread position:604-955
               
               
               Cow position:chr3:38035747-38035397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:241
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):126, 106

               
               
               Conread position:607-839
               
               
               Cow position:chr3:46541980-46541752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):226, 16

               
               
               Conread position:607-935
               
               
               Cow position:chr3:19793745-19793420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 83

               
               
               Conread position:607-941
               
               
               Cow position:chr3:23408504-23408189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:607-941
               
               
               Cow position:chr3:59473968-59474295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):87, 20

               
               
               Conread position:607-941
               
               
               Cow position:chr3:70334117-70333794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:607-949
               
               
               Cow position:chr3:11200136-11199793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):12, 100

               
               
               Conread position:607-949
               
               
               Cow position:chr3:20257052-20257403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:234
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):64, 111

               
               
               Conread position:607-955
               
               
               Cow position:chr3:3032252-3032598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:240
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):95, 103

               
               
               Conread position:607-957
               
               
               Cow position:chr3:29946242-29946577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:227
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:607-957
               
               
               Cow position:chr3:55177905-55177558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 253

               
               
               Conread position:608-941
               
               
               Cow position:chr3:62789331-62788981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:235
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):114, 15

               
               
               Conread position:611-880
               
               
               Cow position:chr3:5366622-5366885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):119, 17

               
               
               Conread position:611-950
               
               
               Cow position:chr3:33329664-33330019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:243
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):24, 35

               
               
               Conread position:612-903
               
               
               Cow position:chr3:61323186-61323471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):180, 15

               
               
               Conread position:612-927
               
               
               Cow position:chr3:24548993-24548673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:214
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):14, 33

               
               
               Conread position:612-930
               
               
               Cow position:chr3:79196612-79196927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):111, 11

               
               
               Conread position:612-934
               
               
               Cow position:chr3:12978764-12978447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):194, 97

               
               
               Conread position:612-935
               
               
               Cow position:chr3:49678978-49679303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:218
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):50, 101

               
               
               Conread position:612-940
               
               
               Cow position:chr3:50615416-50615091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):135, 51

               
               
               Conread position:613-879
               
               
               Cow position:chr3:84243915-84243654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):109, 91

               
               
               Conread position:613-940
               
               
               Cow position:chr3:3883965-3883646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):110, 11

               
               
               Conread position:613-941
               
               
               Cow position:chr3:22221173-22221501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):89, 28

               
               
               Conread position:613-941
               
               
               Cow position:chr3:37041264-37041591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:229
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):16, 241

               
               
               Conread position:613-957
               
               
               Cow position:chr3:6299321-6299650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):7, 84

               
               
               Conread position:613-957
               
               
               Cow position:chr3:54551873-54551518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:236
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):13, 103

               
               
               Conread position:614-807
               
               
               Cow position:chr3:43726931-43727123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):108, 36

               
               
               Conread position:614-911
               
               
               Cow position:chr3:38783468-38783753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:206
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):12, 85

               
               
               Conread position:615-930
               
               
               Cow position:chr3:47417711-47417407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:223
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):81, 102

               
               
               Conread position:615-955
               
               
               Cow position:chr3:35056125-35055787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:243
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):17, 55

               
               
               Conread position:617-949
               
               
               Cow position:chr3:48900481-48900146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:235
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):84, 35

               
               
               Conread position:617-960
               
               
               Cow position:chr3:34871425-34871760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:238
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):113, 39

               
               
               Conread position:618-929
               
               
               Cow position:chr3:73820512-73820202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:222
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):239, 54

               
               
               Conread position:618-936
               
               
               Cow position:chr3:71238331-71238646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:217
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):104, 86

               
               
               Conread position:618-941
               
               
               Cow position:chr3:1517656-1517338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 69

               
               
               Conread position:618-947
               
               
               Cow position:chr3:74500096-74500438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):83, 252

               
               
               Conread position:618-948
               
               
               Cow position:chr3:79271865-79271527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):17, 271

               
               
               Conread position:618-949
               
               
               Cow position:chr3:79097961-79098283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):112, 28

               
               
               Conread position:618-959
               
               
               Cow position:chr3:21015102-21014765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:237
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):104, 16

               
               
               Conread position:618-960
               
               
               Cow position:chr3:51033228-51033568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):112, 63

               
               
               Conread position:619-941
               
               
               Cow position:chr3:15443870-15443551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 7

               
               
               Conread position:619-941
               
               
               Cow position:chr3:76155846-76156161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:213
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):85, 72

               
               
               Conread position:619-959
               
               
               Cow position:chr3:73237053-73237377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):101, 39

               
               
               Conread position:620-950
               
               
               Cow position:chr3:78093524-78093209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:621-941
               
               
               Cow position:chr3:17235348-17235029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):109, 29

               
               
               Conread position:622-861
               
               
               Cow position:chr3:74846849-74846612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):13, 49

               
               
               Conread position:623-946
               
               
               Cow position:chr3:5696867-5696549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):74, 92

               
               
               Conread position:624-870
               
               
               Cow position:chr3:32457064-32457300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):144, 76

               
               
               Conread position:624-951
               
               
               Cow position:chr3:17058676-17058362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):50, 10

               
               
               Conread position:624-959
               
               
               Cow position:chr3:64526712-64527040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:221
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):324, 5

               
               
               Conread position:625-944
               
               
               Cow position:chr3:18179810-18180141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):74, 93

               
               
               Conread position:626-936
               
               
               Cow position:chr3:7661718-7662027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:218
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):61, 90

               
               
               Conread position:626-951
               
               
               Cow position:chr3:13380421-13380092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):48, 42

               
               
               Conread position:627-875
               
               
               Cow position:chr3:84175959-84175712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):89, 79

               
               
               Conread position:627-945
               
               
               Cow position:chr3:22889148-22888834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):70, 11

               
               
               Conread position:627-959
               
               
               Cow position:chr3:59604716-59605036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 45

               
               
               Conread position:628-881
               
               
               Cow position:chr3:22509894-22510144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):94, 80

               
               
               Conread position:631-941
               
               
               Cow position:chr3:45183965-45183646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):39, 62

               
               
               Conread position:631-944
               
               
               Cow position:chr3:83787307-83787620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):124, 77

               
               
               Conread position:631-955
               
               
               Cow position:chr3:42796638-42796328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):315, 53

               
               
               Conread position:633-944
               
               
               Cow position:chr3:31225312-31225600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:633-958
               
               
               Cow position:chr3:56678481-56678162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):91, 81

               
               
               Conread position:634-959
               
               
               Cow position:chr3:58134814-58134491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):96, 63

               
               
               Conread position:637-949
               
               
               Cow position:chr3:48468059-48468359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:219
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:638-941
               
               
               Cow position:chr3:45700684-45700977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):32, 42

               
               
               Conread position:639-949
               
               
               Cow position:chr3:6403300-6403604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:640-960
               
               
               Cow position:chr3:26992446-26992766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):90, 304

               
               
               Conread position:643-860
               
               
               Cow position:chr3:72504016-72503799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):87, 63

               
               
               Conread position:643-941
               
               
               Cow position:chr3:58318071-58317768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:643-950
               
               
               Cow position:chr3:57792654-57792957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):248, 52

               
               
               Conread position:650-949
               
               
               Cow position:chr3:18059591-18059887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):80, 36

               
               
               Conread position:650-950
               
               
               Cow position:chr3:22668304-22668596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:201
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:650-955
               
               
               Cow position:chr3:51402798-51403086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):251, 56

               
               
               Conread position:651-944
               
               
               Cow position:chr3:4268692-4268396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):107, 57

               
               
               Conread position:652-869
               
               
               Cow position:chr3:33693709-33693925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):37, 60

               
               
               Conread position:652-875
               
               
               Cow position:chr3:55983986-55984210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):54, 65

               
               
               Conread position:652-941
               
               
               Cow position:chr3:19711443-19711162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):176, 50

               
               
               Conread position:652-941
               
               
               Cow position:chr3:57704214-57704507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):71, 213

               
               
               Conread position:652-945
               
               
               Cow position:chr3:65019974-65019672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:209
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):70, 54

               
               
               Conread position:653-935
               
               
               Cow position:chr3:9116920-9117203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):221, 41

               
               
               Conread position:654-890
               
               
               Cow position:chr3:73460857-73461090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):69, 148

               
               
               Conread position:654-937
               
               
               Cow position:chr3:31361312-31361594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):69, 7

               
               
               Conread position:654-948
               
               
               Cow position:chr3:83988425-83988716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):52, 11

               
               
               Conread position:654-956
               
               
               Cow position:chr3:15951018-15950726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):69, 43

               
               
               Conread position:654-959
               
               
               Cow position:chr3:3656407-3656708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 60

               
               
               Conread position:655-938
               
               
               Cow position:chr3:59945020-59945299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):67, 29

               
               
               Conread position:655-941
               
               
               Cow position:chr3:3316918-3316633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):189, 47

               
               
               Conread position:655-949
               
               
               Cow position:chr3:15672265-15671970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):41, 16

               
               
               Conread position:655-959
               
               
               Cow position:chr3:22165523-22165221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:222
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):52, 42

               
               
               Conread position:663-960
               
               
               Cow position:chr3:47753126-47753435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):70, 47

               
               
               Conread position:664-949
               
               
               Cow position:chr3:79813509-79813801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:665-949
               
               
               Cow position:chr3:75778157-75777886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):59, 36

               
               
               Conread position:666-941
               
               
               Cow position:chr3:5707309-5707035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):64, 31

               
               
               Conread position:667-925
               
               
               Cow position:chr3:1890206-1889947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:667-941
               
               
               Cow position:chr3:63844835-63845115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):63, 39

               
               
               Conread position:670-945
               
               
               Cow position:chr3:49996817-49996538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):47, 9

               
               
               Conread position:673-923
               
               
               Cow position:chr3:84250632-84250392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):32, 50

               
               
               Conread position:673-940
               
               
               Cow position:chr3:23804429-23804676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):57, 28

               
               
               Conread position:673-948
               
               
               Cow position:chr3:71474496-71474226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):39, 81

               
               
               Conread position:673-950
               
               
               Cow position:chr3:48459420-48459143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):31, 37

               
               
               Conread position:673-955
               
               
               Cow position:chr3:21867124-21866849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:196
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):51, 13

               
               
               Conread position:673-955
               
               
               Cow position:chr3:31350193-31349921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):50, 29

               
               
               Conread position:673-959
               
               
               Cow position:chr3:73961787-73961501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):33, 41

               
               
               Conread position:674-878
               
               
               Cow position:chr3:82629223-82629430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):25, 168

               
               
               Conread position:674-924
               
               
               Cow position:chr3:11640641-11640894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):52, 32

               
               
               Conread position:674-951
               
               
               Cow position:chr3:66631437-66631158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):161, 22

               
               
               Conread position:674-958
               
               
               Cow position:chr3:23203322-23203041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):43, 138

               
               
               Conread position:674-959
               
               
               Cow position:chr3:51609273-51608989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):56, 40

               
               
               Conread position:675-938
               
               
               Cow position:chr3:64196738-64196997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):28, 40

               
               
               Conread position:675-947
               
               
               Cow position:chr3:84174215-84174485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):67, 9

               
               
               Conread position:676-941
               
               
               Cow position:chr3:19682607-19682881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:678-951
               
               
               Cow position:chr3:59299493-59299761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):124, 24

               
               
               Conread position:679-929
               
               
               Cow position:chr3:40145385-40145630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:680-945
               
               
               Cow position:chr3:10841732-10841995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):45, 17

               
               
               Conread position:680-951
               
               
               Cow position:chr3:47316461-47316191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):42, 26

               
               
               Conread position:681-955
               
               
               Cow position:chr3:76269817-76270078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):269, 42

               
               
               Conread position:681-958
               
               
               Cow position:chr3:27976606-27976330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):49, 33

               
               
               Conread position:682-936
               
               
               Cow position:chr3:10668958-10668709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):40, 20

               
               
               Conread position:683-922
               
               
               Cow position:chr3:80709948-80709708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:683-959
               
               
               Cow position:chr3:32569774-32570050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):59, 26

               
               
               Conread position:684-937
               
               
               Cow position:chr3:14546924-14547170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):47, 25

               
               
               Conread position:686-959
               
               
               Cow position:chr3:54067722-54067990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):252, 23

               
               
               Conread position:691-959
               
               
               Cow position:chr3:83889174-83889440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):34, 83

               
               
               Conread position:692-959
               
               
               Cow position:chr3:9026157-9025892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):21, 56

               
               
               Conread position:695-937
               
               
               Cow position:chr3:59933302-59933551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):28, 124

               
               
               Conread position:696-959
               
               
               Cow position:chr3:13241147-13240879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:699-949
               
               
               Cow position:chr3:14770946-14770703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):31, 16

               
               
               Conread position:699-949
               
               
               Cow position:chr3:83770666-83770917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:701-948
               
               
               Cow position:chr3:7581780-7581536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):21, 115

               
               
               Conread position:702-941
               
               
               Cow position:chr3:29334480-29334236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):13, 236

               
               
               Conread position:702-941
               
               
               Cow position:chr3:74644497-74644735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):49, 20

               
               
               Conread position:702-955
               
               
               Cow position:chr3:49363048-49363296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):31, 7

               
               
               Conread position:706-927
               
               
               Cow position:chr3:72745621-72745394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):24, 39

               
               
               Conread position:706-958
               
               
               Cow position:chr3:40213090-40212844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):24, 8

               
               
               Conread position:707-949
               
               
               Cow position:chr3:59702115-59702359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):156, 61

               
               
               Conread position:708-960
               
               
               Cow position:chr3:27083106-27082847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):6, 162

               
               
               Conread position:709-935
               
               
               Cow position:chr3:45823076-45822850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):22, 6

               
               
               Conread position:709-951
               
               
               Cow position:chr3:69785680-69785435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):13, 173

               
               
               Conread position:709-952
               
               
               Cow position:chr3:8349620-8349387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):13, 136

               
               
               Conread position:709-960
               
               
               Cow position:chr3:39996944-39996698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):59, 11

               
               
               Conread position:710-941
               
               
               Cow position:chr3:5040361-5040128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):20, 66

               
               
               Conread position:710-944
               
               
               Cow position:chr3:12090618-12090855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):10, 96

               
               
               Conread position:710-950
               
               
               Cow position:chr3:9120791-9121026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):20, 54

               
               
               Conread position:710-954
               
               
               Cow position:chr3:41873848-41874097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):16, 5

               
               
               Conread position:710-958
               
               
               Cow position:chr3:2637872-2638126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):21, 74

               
               
               Conread position:710-959
               
               
               Cow position:chr3:56949142-56948900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):20, 148

               
               
               Conread position:711-952
               
               
               Cow position:chr3:11281713-11281957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:713-955
               
               
               Cow position:chr3:81923850-81923602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):17, 59

               
               
               Conread position:713-957
               
               
               Cow position:chr3:53084039-53083790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):11, 153

               
               
               Conread position:714-945
               
               
               Cow position:chr3:23132219-23131989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):9, 156

               
               
               Conread position:714-955
               
               
               Cow position:chr3:73335234-73335468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):8, 119

               
               
               Conread position:715-941
               
               
               Cow position:chr3:5305750-5305978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):134, 198

               
               
               Conread position:715-951
               
               
               Cow position:chr3:1011437-1011677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):9, 129

               
               
               Conread position:721-941
               
               
               Cow position:chr3:84928061-84928282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:724-935
               
               
               Cow position:chr3:70756680-70756470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:724-948
               
               
               Cow position:chr3:44959903-44960127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):44, 51

               
               
               Conread position:724-949
               
               
               Cow position:chr3:6728369-6728138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):162, 0

               
               
               Conread position:724-951
               
               
               Cow position:chr3:8814152-8813920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):135, 209

               
               
               Conread position:724-955
               
               
               Cow position:chr3:15973527-15973758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):139, 221

               
               
               Conread position:725-941
               
               
               Cow position:chr3:7860291-7860075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:725-949
               
               
               Cow position:chr3:75222465-75222688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):109, 99

               
               
               Conread position:725-959
               
               
               Cow position:chr3:73525276-73525042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:726-937
               
               
               Cow position:chr3:41863587-41863793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):18, 132

               
               
               Conread position:729-938
               
               
               Cow position:chr3:46559749-46559544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):39, 45

               
               
               Conread position:729-949
               
               
               Cow position:chr3:18248918-18249138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:729-959
               
               
               Cow position:chr3:5551847-5551613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):13, 215

               
               
               Conread position:729-959
               
               
               Cow position:chr3:22924409-22924188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:729-959
               
               
               Cow position:chr3:35624579-35624349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):211, 105

               
               
               Conread position:730-941
               
               
               Cow position:chr3:82366096-82366304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):81, 16

               
               
               Conread position:730-949
               
               
               Cow position:chr3:32317865-32317646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):12, 123

               
               
               Conread position:731-951
               
               
               Cow position:chr3:5703146-5703361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:731-956
               
               
               Cow position:chr3:28902791-28902573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:735-941
               
               
               Cow position:chr3:67407394-67407192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:735-960
               
               
               Cow position:chr3:7381857-7381638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:736-941
               
               
               Cow position:chr3:81666772-81666972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):32, 40

               
               
               Conread position:736-948
               
               
               Cow position:chr3:47199154-47198944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):154, 0

               
               
               Conread position:736-949
               
               
               Cow position:chr3:45743876-45744093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):14, 72

               
               
               Conread position:738-928
               
               
               Cow position:chr3:14589266-14589068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):57, 108

               
               
               Conread position:738-958
               
               
               Cow position:chr3:45314319-45314544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:740-931
               
               
               Cow position:chr3:72255442-72255253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:740-944
               
               
               Cow position:chr3:82195463-82195662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:741-937
               
               
               Cow position:chr3:65308476-65308282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:741-948
               
               
               Cow position:chr3:32376792-32376994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):78, 23

               
               
               Conread position:742-945
               
               
               Cow position:chr3:58101658-58101854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:742-945
               
               
               Cow position:chr3:59271812-59272011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):199, 30

               
               
               Conread position:742-951
               
               
               Cow position:chr3:985993-986200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:745-940
               
               
               Cow position:chr3:27286500-27286689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:746-959
               
               
               Cow position:chr3:79893515-79893303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:747-941
               
               
               Cow position:chr3:61024039-61023846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):188, 0

               
               
               Conread position:747-941
               
               
               Cow position:chr3:83671839-83672030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:747-945
               
               
               Cow position:chr3:25735922-25735724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:748-955
               
               
               Cow position:chr3:59947650-59947856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):195, 0

               
               
               Conread position:754-951
               
               
               Cow position:chr3:55730478-55730281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:756-951
               
               
               Cow position:chr3:37641318-37641511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):12, 91

               
               
               Conread position:757-951
               
               
               Cow position:chr3:78071797-78071607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:758-941
               
               
               Cow position:chr3:52845551-52845730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:759-941
               
               
               Cow position:chr3:41510572-41510753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):49, 100

               
               
               Conread position:761-959
               
               
               Cow position:chr3:57790611-57790801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:764-959
               
               
               Cow position:chr3:68624219-68624417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):173, 11

               
               
               Conread position:772-945
               
               
               Cow position:chr3:62789946-62789770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:772-958
               
               
               Cow position:chr3:51150137-51150322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):68, 141

               
               
               Conread position:773-927
               
               
               Cow position:chr3:83199521-83199674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:773-935
               
               
               Cow position:chr3:67942526-67942364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:773-941
               
               
               Cow position:chr3:23037499-23037333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:773-941
               
               
               Cow position:chr3:59681894-59681732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:773-945
               
               
               Cow position:chr3:25702332-25702152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:773-948
               
               
               Cow position:chr3:83705527-83705353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:773-949
               
               
               Cow position:chr3:58010819-58010651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:773-949
               
               
               Cow position:chr3:79398152-79398328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:773-950
               
               
               Cow position:chr3:56754523-56754350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):161, 29

               
               
               Conread position:773-950
               
               
               Cow position:chr3:64910086-64909911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:773-951
               
               
               Cow position:chr3:62186161-62186343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:773-951
               
               
               Cow position:chr3:68289686-68289867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):70, 174

               
               
               Conread position:773-959
               
               
               Cow position:chr3:11607832-11608013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):167, 28

               
               
               Conread position:773-959
               
               
               Cow position:chr3:14211973-14211794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:773-959
               
               
               Cow position:chr3:19044756-19044575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:773-959
               
               
               Cow position:chr3:37851506-37851687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):16, 108

               
               
               Conread position:774-927
               
               
               Cow position:chr3:5003644-5003793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:774-937
               
               
               Cow position:chr3:40958116-40957957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:774-938
               
               
               Cow position:chr3:20021280-20021440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:774-940
               
               
               Cow position:chr3:74515327-74515162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):57, 51

               
               
               Conread position:774-941
               
               
               Cow position:chr3:18471312-18471478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:774-941
               
               
               Cow position:chr3:19611341-19611178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:774-941
               
               
               Cow position:chr3:43896049-43895888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:774-941
               
               
               Cow position:chr3:63069355-63069186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:774-941
               
               
               Cow position:chr3:74050691-74050531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:774-945
               
               
               Cow position:chr3:29234670-29234499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):87, 142

               
               
               Conread position:774-948
               
               
               Cow position:chr3:84137804-84137632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:774-949
               
               
               Cow position:chr3:41366699-41366517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:774-949
               
               
               Cow position:chr3:59317713-59317883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:774-951
               
               
               Cow position:chr3:15859368-15859197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):64, 52

               
               
               Conread position:774-951
               
               
               Cow position:chr3:17531727-17531553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:774-951
               
               
               Cow position:chr3:46259721-46259897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:774-952
               
               
               Cow position:chr3:77098812-77098637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):171, 84

               
               
               Conread position:774-956
               
               
               Cow position:chr3:51153056-51153237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):169, 68

               
               
               Conread position:774-956
               
               
               Cow position:chr3:55106138-55105954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):165, 0

               
               
               Conread position:774-957
               
               
               Cow position:chr3:56943915-56943740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:774-960
               
               
               Cow position:chr3:76056274-76056095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:775-932
               
               
               Cow position:chr3:10115310-10115461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:775-941
               
               
               Cow position:chr3:9718240-9718074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:775-941
               
               
               Cow position:chr3:75966772-75966607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):47, 94

               
               
               Conread position:775-941
               
               
               Cow position:chr3:76168620-76168454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:775-948
               
               
               Cow position:chr3:44782351-44782520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:775-949
               
               
               Cow position:chr3:35802929-35802753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:775-950
               
               
               Cow position:chr3:3453591-3453767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):163, 0

               
               
               Conread position:775-951
               
               
               Cow position:chr3:80958499-80958325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:775-954
               
               
               Cow position:chr3:15160532-15160705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:775-955
               
               
               Cow position:chr3:21694236-21694417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):73, 113

               
               
               Conread position:775-955
               
               
               Cow position:chr3:62370067-62370245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):84, 15

               
               
               Conread position:775-956
               
               
               Cow position:chr3:3262822-3262632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:775-958
               
               
               Cow position:chr3:2016447-2016625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):170, 82

               
               
               Conread position:775-959
               
               
               Cow position:chr3:18700099-18699915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:775-959
               
               
               Cow position:chr3:66885018-66884834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):167, 74

               
               
               Conread position:775-959
               
               
               Cow position:chr3:75871490-75871674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:775-960
               
               
               Cow position:chr3:59588650-59588836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):90, 174

               
               
               Conread position:776-960
               
               
               Cow position:chr3:82175520-82175705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):174, 34

               
               
               Conread position:778-941
               
               
               Cow position:chr3:8523139-8522979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:780-941
               
               
               Cow position:chr3:22868703-22868541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):15, 100

               
               
               Conread position:780-949
               
               
               Cow position:chr3:3011163-3011328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):64, 108

               
               
               Conread position:780-949
               
               
               Cow position:chr3:8147509-8147339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):58, 107

               
               
               Conread position:780-951
               
               
               Cow position:chr3:60370999-60371169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:780-951
               
               
               Cow position:chr3:72027654-72027824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:780-951
               
               
               Cow position:chr3:83934742-83934910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):154, 71

               
               
               Conread position:780-952
               
               
               Cow position:chr3:28904987-28905159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:780-955
               
               
               Cow position:chr3:53604729-53604554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):159, 78

               
               
               Conread position:780-958
               
               
               Cow position:chr3:58614473-58614656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):78, 135

               
               
               Conread position:780-958
               
               
               Cow position:chr3:63860594-63860418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:781-935
               
               
               Cow position:chr3:77171332-77171487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:781-941
               
               
               Cow position:chr3:49787576-49787731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:781-941
               
               
               Cow position:chr3:58929517-58929357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):60, 72

               
               
               Conread position:781-951
               
               
               Cow position:chr3:635195-635363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:781-951
               
               
               Cow position:chr3:2636912-2636749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:781-959
               
               
               Cow position:chr3:76300789-76300965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):119, 128

               
               
               Conread position:782-941
               
               
               Cow position:chr3:28897003-28896846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:782-944
               
               
               Cow position:chr3:35883916-35883754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:782-946
               
               
               Cow position:chr3:621453-621621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:782-947
               
               
               Cow position:chr3:4071752-4071588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:782-947
               
               
               Cow position:chr3:24220559-24220399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:782-948
               
               
               Cow position:chr3:18479279-18479114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:782-951
               
               
               Cow position:chr3:32248030-32248198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):150, 0

               
               
               Conread position:782-951
               
               
               Cow position:chr3:59810410-59810239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):160, 7

               
               
               Conread position:782-956
               
               
               Cow position:chr3:79105564-79105390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:782-958
               
               
               Cow position:chr3:33460590-33460407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:782-959
               
               
               Cow position:chr3:42483945-42484119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):29, 124

               
               
               Conread position:782-959
               
               
               Cow position:chr3:58558298-58558475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-941
               
               
               Cow position:chr3:2636969-2637120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:783-945
               
               
               Cow position:chr3:43016431-43016261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:783-951
               
               
               Cow position:chr3:11027294-11027462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-958
               
               
               Cow position:chr3:77665531-77665360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):147, 12

               
               
               Conread position:784-941
               
               
               Cow position:chr3:22078096-22078253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:784-956
               
               
               Cow position:chr3:18764122-18764296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):46, 41

               
               
               Conread position:787-949
               
               
               Cow position:chr3:74127485-74127317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:787-951
               
               
               Cow position:chr3:32436659-32436823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):122, 59

               
               
               Conread position:787-951
               
               
               Cow position:chr3:58562717-58562886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):13, 71

               
               
               Conread position:787-955
               
               
               Cow position:chr3:44218789-44218957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:790-941
               
               
               Cow position:chr3:73410313-73410458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:790-944
               
               
               Cow position:chr3:12178083-12178239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:790-951
               
               
               Cow position:chr3:75907938-75908097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):16, 68

               
               
               Conread position:790-955
               
               
               Cow position:chr3:62312822-62312986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):69, 58

               
               
               Conread position:790-959
               
               
               Cow position:chr3:26337993-26337823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:790-959
               
               
               Cow position:chr3:31793857-31793688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):158, 148

               
               
               Conread position:790-959
               
               
               Cow position:chr3:43389101-43388934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):163, 0

               
               
               Conread position:791-954
               
               
               Cow position:chr3:34392193-34392037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):14, 5

               
               
               Conread position:793-949
               
               
               Cow position:chr3:78115563-78115407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:793-958
               
               
               Cow position:chr3:58497687-58497852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):32, 26

               
               
               Conread position:795-948
               
               
               Cow position:chr3:29943888-29944043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:796-945
               
               
               Cow position:chr3:8181923-8181770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:801-951
               
               
               Cow position:chr3:7408473-7408623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:801-960
               
               
               Cow position:chr3:61680352-61680511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:805-944
               
               
               Cow position:chr3:72626704-72626564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:811-938
               
               
               Cow position:chr3:42933528-42933655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:811-955
               
               
               Cow position:chr3:70632192-70632338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:816-950
               
               
               Cow position:chr3:79877079-79877214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:102
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:822-941
               
               
               Cow position:chr3:66563841-66563960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:94
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:828-943
               
               
               Cow position:chr3:75975017-75974901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:94
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:841-950
               
               
               Cow position:chr3:10453919-10454028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:87
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:514-941
               
               
               Cow position:chr4:10034671-10035095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:265
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 114

               
               
               Conread position:514-955
               
               
               Cow position:chr4:51850977-51851417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:300
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):93, 36

               
               
               Conread position:547-958
               
               
               Cow position:chr4:19238041-19238426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:277
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):47, 7

               
               
               Conread position:549-957
               
               
               Cow position:chr4:61313397-61312994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:287
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):70, 10

               
               
               Conread position:553-892
               
               
               Cow position:chr4:42481004-42481327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):153, 16

               
               
               Conread position:561-709
               
               
               Cow position:chr4:68855470-68855620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):65, 30

               
               
               Conread position:562-950
               
               
               Cow position:chr4:43894993-43894610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:271
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):13, 7

               
               
               Conread position:563-951
               
               
               Cow position:chr4:21089047-21088667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:257
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):195, 28

               
               
               Conread position:566-699
               
               
               Cow position:chr4:29237334-29237203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:566-751
               
               
               Cow position:chr4:26746304-26746488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):156, 144

               
               
               Conread position:566-752
               
               
               Cow position:chr4:63860061-63859881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):156, 25

               
               
               Conread position:566-804
               
               
               Cow position:chr4:13255910-13256140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):29, 63

               
               
               Conread position:566-819
               
               
               Cow position:chr4:17474258-17474512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):26, 139

               
               
               Conread position:566-842
               
               
               Cow position:chr4:12903637-12903917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):27, 62

               
               
               Conread position:566-842
               
               
               Cow position:chr4:47348651-47348922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):156, 19

               
               
               Conread position:566-848
               
               
               Cow position:chr4:5461040-5460760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):22, 82

               
               
               Conread position:566-875
               
               
               Cow position:chr4:51784001-51784305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):136, 57

               
               
               Conread position:566-882
               
               
               Cow position:chr4:19322259-19321940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:226
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):108, 19

               
               
               Conread position:566-941
               
               
               Cow position:chr4:17774532-17774174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:255
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):20, 58

               
               
               Conread position:566-944
               
               
               Cow position:chr4:61389254-61388874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:252
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):32, 151

               
               
               Conread position:566-946
               
               
               Cow position:chr4:23526517-23526892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 31

               
               
               Conread position:566-948
               
               
               Cow position:chr4:51903422-51903806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 134

               
               
               Conread position:566-951
               
               
               Cow position:chr4:3687748-3688130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:258
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):243, 24

               
               
               Conread position:566-956
               
               
               Cow position:chr4:12591391-12591017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:273
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):53, 121

               
               
               Conread position:566-960
               
               
               Cow position:chr4:85515-85905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:258
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):98, 33

               
               
               Conread position:567-809
               
               
               Cow position:chr4:8947216-8947458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):25, 57

               
               
               Conread position:568-846
               
               
               Cow position:chr4:22860889-22860611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):7, 58

               
               
               Conread position:569-699
               
               
               Cow position:chr4:19561509-19561639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):13, 56

               
               
               Conread position:569-778
               
               
               Cow position:chr4:11201640-11201852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):27, 114

               
               
               Conread position:569-900
               
               
               Cow position:chr4:23600004-23600319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):37, 56

               
               
               Conread position:569-929
               
               
               Cow position:chr4:21531819-21531461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 55

               
               
               Conread position:569-951
               
               
               Cow position:chr4:4084623-4084255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:261
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):25, 55

               
               
               Conread position:572-750
               
               
               Cow position:chr4:17660362-17660183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):54, 17

               
               
               Conread position:572-939
               
               
               Cow position:chr4:16881535-16881184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:254
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):20, 47

               
               
               Conread position:572-959
               
               
               Cow position:chr4:33100985-33100593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:270
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):55, 17

               
               
               Conread position:573-941
               
               
               Cow position:chr4:9925802-9925448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):46, 116

               
               
               Conread position:573-948
               
               
               Cow position:chr4:570621-570986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:258
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):20, 102

               
               
               Conread position:574-734
               
               
               Cow position:chr4:53999683-53999521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):19, 139

               
               
               Conread position:574-872
               
               
               Cow position:chr4:59372448-59372159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):19, 75

               
               
               Conread position:574-941
               
               
               Cow position:chr4:45077245-45076888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:254
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):19, 53

               
               
               Conread position:574-941
               
               
               Cow position:chr4:49794498-49794841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:259
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):19, 100

               
               
               Conread position:574-949
               
               
               Cow position:chr4:13043094-13043470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:257
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):19, 73

               
               
               Conread position:574-949
               
               
               Cow position:chr4:37342941-37343319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:263
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):19, 81

               
               
               Conread position:574-949
               
               
               Cow position:chr4:59056024-59055671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:256
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):24, 73

               
               
               Conread position:575-855
               
               
               Cow position:chr4:41186076-41185811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):18, 40

               
               
               Conread position:575-929
               
               
               Cow position:chr4:45775517-45775151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 132

               
               
               Conread position:575-947
               
               
               Cow position:chr4:24372026-24371657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:261
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):18, 100

               
               
               Conread position:575-949
               
               
               Cow position:chr4:15635615-15635252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:251
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:576-733
               
               
               Cow position:chr4:11901731-11901574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):16, 110

               
               
               Conread position:576-767
               
               
               Cow position:chr4:5984205-5984025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):50, 14

               
               
               Conread position:576-813
               
               
               Cow position:chr4:5999357-5999128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):16, 49

               
               
               Conread position:576-848
               
               
               Cow position:chr4:27755465-27755202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:576-860
               
               
               Cow position:chr4:25888994-25888721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:576-860
               
               
               Cow position:chr4:39128367-39128651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):126, 11

               
               
               Conread position:576-871
               
               
               Cow position:chr4:25879229-25879515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):41, 9

               
               
               Conread position:576-936
               
               
               Cow position:chr4:19408168-19407805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 48

               
               
               Conread position:576-945
               
               
               Cow position:chr4:62317280-62317642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:257
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):203, 11

               
               
               Conread position:576-956
               
               
               Cow position:chr4:11897463-11897096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 25

               
               
               Conread position:576-960
               
               
               Cow position:chr4:65826015-65825612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:266
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):71, 13

               
               
               Conread position:577-699
               
               
               Cow position:chr4:67392793-67392914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:577-752
               
               
               Cow position:chr4:36724871-36725047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):15, 48

               
               
               Conread position:577-761
               
               
               Cow position:chr4:24119076-24118892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):15, 109

               
               
               Conread position:577-803
               
               
               Cow position:chr4:39231684-39231464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):21, 56

               
               
               Conread position:577-831
               
               
               Cow position:chr4:62772091-62771835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):104, 47

               
               
               Conread position:577-848
               
               
               Cow position:chr4:37935448-37935183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:577-874
               
               
               Cow position:chr4:44839052-44838767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:208
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):15, 36

               
               
               Conread position:577-874
               
               
               Cow position:chr4:65650292-65650005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):10, 75

               
               
               Conread position:577-877
               
               
               Cow position:chr4:46597206-46597501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:225
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):10, 132

               
               
               Conread position:577-878
               
               
               Cow position:chr4:13941292-13941589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):15, 77

               
               
               Conread position:577-933
               
               
               Cow position:chr4:43740354-43740714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 280

               
               
               Conread position:577-937
               
               
               Cow position:chr4:19597483-19597145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:250
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):11, 47

               
               
               Conread position:577-941
               
               
               Cow position:chr4:44612835-44613196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:248
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):15, 133

               
               
               Conread position:577-941
               
               
               Cow position:chr4:48321857-48322228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:260
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):15, 95

               
               
               Conread position:577-941
               
               
               Cow position:chr4:51768945-51769296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:256
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):15, 66

               
               
               Conread position:577-949
               
               
               Cow position:chr4:29106738-29107110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 8

               
               
               Conread position:577-951
               
               
               Cow position:chr4:22101424-22101058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):363, 11

               
               
               Conread position:577-951
               
               
               Cow position:chr4:29291352-29291707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):15, 54

               
               
               Conread position:577-951
               
               
               Cow position:chr4:47730691-47731065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 39

               
               
               Conread position:577-955
               
               
               Cow position:chr4:18974266-18974635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 8

               
               
               Conread position:577-960
               
               
               Cow position:chr4:41867277-41867659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:267
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):15, 47

               
               
               Conread position:578-846
               
               
               Cow position:chr4:14919828-14920086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):10, 131

               
               
               Conread position:578-941
               
               
               Cow position:chr4:34630729-34631098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 45

               
               
               Conread position:578-950
               
               
               Cow position:chr4:56240015-56239664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:260
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):61, 45

               
               
               Conread position:578-955
               
               
               Cow position:chr4:1985477-1985856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:256
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):13, 47

               
               
               Conread position:579-712
               
               
               Cow position:chr4:10016758-10016633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:579-958
               
               
               Cow position:chr4:14414507-14414143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:267
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):16, 8

               
               
               Conread position:580-951
               
               
               Cow position:chr4:40918121-40918510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:263
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):46, 65

               
               
               Conread position:580-959
               
               
               Cow position:chr4:7660-7288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:250
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):45, 5

               
               
               Conread position:581-695
               
               
               Cow position:chr4:45574842-45574955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:95
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):7, 90

               
               
               Conread position:581-700
               
               
               Cow position:chr4:25359445-25359566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:95
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:581-713
               
               
               Cow position:chr4:5047500-5047368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):47, 91

               
               
               Conread position:581-812
               
               
               Cow position:chr4:45711206-45711429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):11, 44

               
               
               Conread position:581-813
               
               
               Cow position:chr4:17112040-17111807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):8, 44

               
               
               Conread position:581-842
               
               
               Cow position:chr4:19582779-19582522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):135, 42

               
               
               Conread position:581-842
               
               
               Cow position:chr4:24002129-24001871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):11, 26

               
               
               Conread position:581-875
               
               
               Cow position:chr4:41301154-41300869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):11, 45

               
               
               Conread position:581-918
               
               
               Cow position:chr4:17052765-17052417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:235
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):11, 200

               
               
               Conread position:581-941
               
               
               Cow position:chr4:10732059-10732413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:244
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):7, 127

               
               
               Conread position:581-945
               
               
               Cow position:chr4:9444850-9444487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):11, 54

               
               
               Conread position:581-945
               
               
               Cow position:chr4:12127802-12127444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:251
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):43, 7

               
               
               Conread position:581-945
               
               
               Cow position:chr4:34310614-34310270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:259
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):6, 110

               
               
               Conread position:581-948
               
               
               Cow position:chr4:45583286-45582924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):5, 130

               
               
               Conread position:581-949
               
               
               Cow position:chr4:54455504-54455144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):357, 11

               
               
               Conread position:581-950
               
               
               Cow position:chr4:19744722-19745070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):6, 43

               
               
               Conread position:581-951
               
               
               Cow position:chr4:19584545-19584915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:275
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):11, 134

               
               
               Conread position:581-951
               
               
               Cow position:chr4:28839462-28839813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:257
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):11, 44

               
               
               Conread position:581-951
               
               
               Cow position:chr4:31023282-31023651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:262
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):5, 58

               
               
               Conread position:581-951
               
               
               Cow position:chr4:31506195-31505817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 49

               
               
               Conread position:582-875
               
               
               Cow position:chr4:59377753-59378038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):149, 42

               
               
               Conread position:584-935
               
               
               Cow position:chr4:66172957-66172610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):113, 40

               
               
               Conread position:584-951
               
               
               Cow position:chr4:48104732-48104364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:254
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):59, 107

               
               
               Conread position:585-814
               
               
               Cow position:chr4:25806744-25806967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):37, 60

               
               
               Conread position:585-842
               
               
               Cow position:chr4:34337425-34337176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):112, 34

               
               
               Conread position:585-903
               
               
               Cow position:chr4:36893199-36893521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:215
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):137, 38

               
               
               Conread position:585-937
               
               
               Cow position:chr4:509061-508725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:248
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):137, 61

               
               
               Conread position:585-941
               
               
               Cow position:chr4:16762886-16762528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:250
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):17, 60

               
               
               Conread position:585-941
               
               
               Cow position:chr4:27529959-27530303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:250
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):127, 38

               
               
               Conread position:585-941
               
               
               Cow position:chr4:36290469-36290813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 39

               
               
               Conread position:585-941
               
               
               Cow position:chr4:38944419-38944067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 38

               
               
               Conread position:585-948
               
               
               Cow position:chr4:6413347-6413001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:239
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):41, 55

               
               
               Conread position:585-949
               
               
               Cow position:chr4:14542837-14542476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 112

               
               
               Conread position:585-951
               
               
               Cow position:chr4:42423956-42423608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:256
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):138, 38

               
               
               Conread position:585-958
               
               
               Cow position:chr4:52748616-52748252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:259
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):119, 38

               
               
               Conread position:586-929
               
               
               Cow position:chr4:44258505-44258152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):40, 15

               
               
               Conread position:588-959
               
               
               Cow position:chr4:58248249-58248618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 23

               
               
               Conread position:589-872
               
               
               Cow position:chr4:34211004-34211293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):54, 124

               
               
               Conread position:589-941
               
               
               Cow position:chr4:20125144-20124777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:258
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):32, 74

               
               
               Conread position:590-950
               
               
               Cow position:chr4:54190935-54191303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 33

               
               
               Conread position:591-694
               
               
               Cow position:chr4:42232505-42232608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:86
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:591-695
               
               
               Cow position:chr4:63077430-63077326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:85
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:591-699
               
               
               Cow position:chr4:54667842-54667733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:89
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:591-700
               
               
               Cow position:chr4:46370662-46370771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:591-708
               
               
               Cow position:chr4:57555818-57555936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:591-716
               
               
               Cow position:chr4:65538570-65538444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):111, 120

               
               
               Conread position:591-719
               
               
               Cow position:chr4:59008522-59008396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:591-720
               
               
               Cow position:chr4:38887289-38887157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):81, 122

               
               
               Conread position:591-721
               
               
               Cow position:chr4:43370006-43369876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):28, 126

               
               
               Conread position:591-728
               
               
               Cow position:chr4:54501601-54501463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):106, 33

               
               
               Conread position:591-735
               
               
               Cow position:chr4:33421513-33421368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):29, 75

               
               
               Conread position:591-736
               
               
               Cow position:chr4:11671303-11671442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:591-752
               
               
               Cow position:chr4:480157-480002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-752
               
               
               Cow position:chr4:27687771-27687933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):111, 118

               
               
               Conread position:591-752
               
               
               Cow position:chr4:34924841-34924684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):131, 46

               
               
               Conread position:591-753
               
               
               Cow position:chr4:24688497-24688338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):35, 57

               
               
               Conread position:591-766
               
               
               Cow position:chr4:37620040-37619868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):88, 117

               
               
               Conread position:591-766
               
               
               Cow position:chr4:54851272-54851098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):36, 105

               
               
               Conread position:591-767
               
               
               Cow position:chr4:3689556-3689725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):132, 28

               
               
               Conread position:591-767
               
               
               Cow position:chr4:19463343-19463517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-772
               
               
               Cow position:chr4:22051622-22051444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):28, 15

               
               
               Conread position:591-788
               
               
               Cow position:chr4:60370981-60370784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):133, 115

               
               
               Conread position:591-798
               
               
               Cow position:chr4:20299122-20299326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):131, 21

               
               
               Conread position:591-800
               
               
               Cow position:chr4:38705927-38705719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):111, 151

               
               
               Conread position:591-806
               
               
               Cow position:chr4:21371238-21371451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):131, 79

               
               
               Conread position:591-807
               
               
               Cow position:chr4:19007894-19008107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):35, 54

               
               
               Conread position:591-809
               
               
               Cow position:chr4:14470722-14470507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):109, 28

               
               
               Conread position:591-811
               
               
               Cow position:chr4:11331940-11332162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):165, 32

               
               
               Conread position:591-812
               
               
               Cow position:chr4:41602697-41602915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):116, 33

               
               
               Conread position:591-816
               
               
               Cow position:chr4:33612511-33612289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-819
               
               
               Cow position:chr4:9570897-9571128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):35, 193

               
               
               Conread position:591-820
               
               
               Cow position:chr4:16602205-16601989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-824
               
               
               Cow position:chr4:21233026-21232796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):91, 32

               
               
               Conread position:591-834
               
               
               Cow position:chr4:51739861-51739631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):131, 33

               
               
               Conread position:591-840
               
               
               Cow position:chr4:19313856-19314107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):32, 113

               
               
               Conread position:591-842
               
               
               Cow position:chr4:21391965-21391716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):125, 32

               
               
               Conread position:591-842
               
               
               Cow position:chr4:34369605-34369354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):35, 46

               
               
               Conread position:591-847
               
               
               Cow position:chr4:961816-961550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):52, 33

               
               
               Conread position:591-847
               
               
               Cow position:chr4:13974121-13973869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):96, 37

               
               
               Conread position:591-848
               
               
               Cow position:chr4:20766-21014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:591-854
               
               
               Cow position:chr4:10056056-10056312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):35, 100

               
               
               Conread position:591-857
               
               
               Cow position:chr4:65950496-65950765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):29, 121

               
               
               Conread position:591-860
               
               
               Cow position:chr4:43866010-43865743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):29, 18

               
               
               Conread position:591-867
               
               
               Cow position:chr4:10378956-10379232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-874
               
               
               Cow position:chr4:4843399-4843116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):35, 101

               
               
               Conread position:591-875
               
               
               Cow position:chr4:32726074-32726354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):131, 34

               
               
               Conread position:591-875
               
               
               Cow position:chr4:44782221-44782503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:199
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:591-875
               
               
               Cow position:chr4:45367581-45367868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):35, 117

               
               
               Conread position:591-896
               
               
               Cow position:chr4:46456213-46455919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:591-903
               
               
               Cow position:chr4:2602079-2602389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 194

               
               
               Conread position:591-904
               
               
               Cow position:chr4:22345170-22344865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):131, 55

               
               
               Conread position:591-910
               
               
               Cow position:chr4:7571258-7571570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:214
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):131, 31

               
               
               Conread position:591-916
               
               
               Cow position:chr4:28836378-28836704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 79

               
               
               Conread position:591-919
               
               
               Cow position:chr4:12004068-12004387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 115

               
               
               Conread position:591-922
               
               
               Cow position:chr4:16593931-16594248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):111, 35

               
               
               Conread position:591-922
               
               
               Cow position:chr4:29238191-29237868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):35, 107

               
               
               Conread position:591-925
               
               
               Cow position:chr4:805905-806235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):36, 117

               
               
               Conread position:591-929
               
               
               Cow position:chr4:54479056-54478735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:238
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):268, 32

               
               
               Conread position:591-932
               
               
               Cow position:chr4:46550236-46550571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:234
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-933
               
               
               Cow position:chr4:4321154-4320810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:246
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):35, 118

               
               
               Conread position:591-935
               
               
               Cow position:chr4:53208143-53208468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:591-936
               
               
               Cow position:chr4:13589935-13590273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:236
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):244, 103

               
               
               Conread position:591-937
               
               
               Cow position:chr4:3421475-3421811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 32

               
               
               Conread position:591-937
               
               
               Cow position:chr4:19501236-19500901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:242
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):176, 28

               
               
               Conread position:591-937
               
               
               Cow position:chr4:27276698-27276358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 44

               
               
               Conread position:591-937
               
               
               Cow position:chr4:38935204-38935545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 32

               
               
               Conread position:591-937
               
               
               Cow position:chr4:45589753-45589408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):14, 80

               
               
               Conread position:591-937
               
               
               Cow position:chr4:59277628-59277287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:241
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-939
               
               
               Cow position:chr4:19708789-19709132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):35, 14

               
               
               Conread position:591-939
               
               
               Cow position:chr4:23445205-23444849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 81

               
               
               Conread position:591-939
               
               
               Cow position:chr4:43909591-43909954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):85, 11

               
               
               Conread position:591-940
               
               
               Cow position:chr4:30574299-30574651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:249
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):105, 33

               
               
               Conread position:591-940
               
               
               Cow position:chr4:65815850-65815498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):131, 33

               
               
               Conread position:591-941
               
               
               Cow position:chr4:3388392-3388733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 117

               
               
               Conread position:591-941
               
               
               Cow position:chr4:12676652-12676986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:242
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:591-941
               
               
               Cow position:chr4:15904946-15905297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 26

               
               
               Conread position:591-941
               
               
               Cow position:chr4:19435108-19435440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:244
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:591-941
               
               
               Cow position:chr4:30778982-30778628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:233
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):139, 94

               
               
               Conread position:591-941
               
               
               Cow position:chr4:30974188-30974525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):132, 34

               
               
               Conread position:591-941
               
               
               Cow position:chr4:31136599-31136946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:242
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):124, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr4:32459017-32458665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 107

               
               
               Conread position:591-941
               
               
               Cow position:chr4:33097128-33096779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):117, 34

               
               
               Conread position:591-941
               
               
               Cow position:chr4:43515574-43515914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):103, 33

               
               
               Conread position:591-941
               
               
               Cow position:chr4:45662660-45662325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):175, 26

               
               
               Conread position:591-941
               
               
               Cow position:chr4:48152516-48152180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:244
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):346, 31

               
               
               Conread position:591-941
               
               
               Cow position:chr4:61897688-61897361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):68, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr4:62983702-62983367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):150, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr4:66547919-66547572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):265, 33

               
               
               Conread position:591-942
               
               
               Cow position:chr4:4185972-4186309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):41, 30

               
               
               Conread position:591-944
               
               
               Cow position:chr4:68076682-68076345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 106

               
               
               Conread position:591-945
               
               
               Cow position:chr4:203294-202947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:245
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):131, 33

               
               
               Conread position:591-945
               
               
               Cow position:chr4:4319297-4318959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):245, 15

               
               
               Conread position:591-945
               
               
               Cow position:chr4:24810593-24810256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):240, 32

               
               
               Conread position:591-948
               
               
               Cow position:chr4:23847200-23846857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-948
               
               
               Cow position:chr4:65930953-65930600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):109, 34

               
               
               Conread position:591-949
               
               
               Cow position:chr4:11099821-11099462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:252
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):135, 32

               
               
               Conread position:591-949
               
               
               Cow position:chr4:13668780-13668419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 126

               
               
               Conread position:591-949
               
               
               Cow position:chr4:14152936-14153314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:260
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):53, 32

               
               
               Conread position:591-949
               
               
               Cow position:chr4:23509440-23509789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 124

               
               
               Conread position:591-949
               
               
               Cow position:chr4:33623566-33623912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:237
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):34, 79

               
               
               Conread position:591-949
               
               
               Cow position:chr4:47041576-47041216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):35, 54

               
               
               Conread position:591-950
               
               
               Cow position:chr4:20147034-20147385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 26

               
               
               Conread position:591-950
               
               
               Cow position:chr4:22010213-22009867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):84, 32

               
               
               Conread position:591-951
               
               
               Cow position:chr4:275311-275645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):129, 32

               
               
               Conread position:591-951
               
               
               Cow position:chr4:10915989-10915629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 32

               
               
               Conread position:591-951
               
               
               Cow position:chr4:13284228-13284584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):23, 56

               
               
               Conread position:591-951
               
               
               Cow position:chr4:19118854-19119223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:254
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):106, 32

               
               
               Conread position:591-951
               
               
               Cow position:chr4:20327862-20327522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:249
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-951
               
               
               Cow position:chr4:35981841-35982201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-952
               
               
               Cow position:chr4:1014915-1015273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:243
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):109, 132

               
               
               Conread position:591-952
               
               
               Cow position:chr4:37691465-37691107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:248
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):28, 58

               
               
               Conread position:591-956
               
               
               Cow position:chr4:34641878-34641519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 21

               
               
               Conread position:591-957
               
               
               Cow position:chr4:22073468-22073110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:255
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):83, 76

               
               
               Conread position:591-957
               
               
               Cow position:chr4:54937738-54938086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 16

               
               
               Conread position:591-958
               
               
               Cow position:chr4:59785165-59785524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 93

               
               
               Conread position:591-958
               
               
               Cow position:chr4:59871333-59871687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):139, 37

               
               
               Conread position:591-959
               
               
               Cow position:chr4:2099481-2099840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 96

               
               
               Conread position:591-959
               
               
               Cow position:chr4:8769954-8770300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):35, 70

               
               
               Conread position:591-959
               
               
               Cow position:chr4:15439427-15439797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 6

               
               
               Conread position:591-959
               
               
               Cow position:chr4:22138384-22138005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:591-959
               
               
               Cow position:chr4:64192343-64191973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:256
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):56, 32

               
               
               Conread position:591-960
               
               
               Cow position:chr4:21064886-21065236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:254
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):347, 16

               
               
               Conread position:591-960
               
               
               Cow position:chr4:28772219-28771863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:252
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):108, 16

               
               
               Conread position:591-960
               
               
               Cow position:chr4:37915490-37915123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 33

               
               
               Conread position:591-960
               
               
               Cow position:chr4:45685316-45685662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):32, 57

               
               
               Conread position:592-700
               
               
               Cow position:chr4:43495750-43495858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:89
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):75, 32

               
               
               Conread position:592-753
               
               
               Cow position:chr4:47289923-47290085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):34, 104

               
               
               Conread position:592-761
               
               
               Cow position:chr4:53209086-53209252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):35, 89

               
               
               Conread position:592-782
               
               
               Cow position:chr4:21517156-21516967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):138, 35

               
               
               Conread position:592-819
               
               
               Cow position:chr4:35940159-35939933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):33, 110

               
               
               Conread position:592-842
               
               
               Cow position:chr4:12049094-12049342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):131, 31

               
               
               Conread position:592-842
               
               
               Cow position:chr4:42922003-42921764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):131, 78

               
               
               Conread position:592-845
               
               
               Cow position:chr4:55395609-55395860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):130, 115

               
               
               Conread position:592-847
               
               
               Cow position:chr4:20157568-20157316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):120, 6

               
               
               Conread position:592-853
               
               
               Cow position:chr4:54804581-54804312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):27, 126

               
               
               Conread position:592-877
               
               
               Cow position:chr4:63096224-63095942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):115, 34

               
               
               Conread position:592-896
               
               
               Cow position:chr4:50203600-50203903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):34, 80

               
               
               Conread position:592-918
               
               
               Cow position:chr4:64091-63768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):34, 19

               
               
               Conread position:592-918
               
               
               Cow position:chr4:19548845-19549164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:210
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):34, 56

               
               
               Conread position:592-925
               
               
               Cow position:chr4:31859114-31859443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):36, 59

               
               
               Conread position:592-933
               
               
               Cow position:chr4:26323585-26323927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 114

               
               
               Conread position:592-933
               
               
               Cow position:chr4:31004559-31004229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:592-935
               
               
               Cow position:chr4:6659967-6659626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:235
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):24, 82

               
               
               Conread position:592-935
               
               
               Cow position:chr4:29805521-29805184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):27, 109

               
               
               Conread position:592-941
               
               
               Cow position:chr4:26659153-26659491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 31

               
               
               Conread position:592-941
               
               
               Cow position:chr4:41371091-41370750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:238
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):176, 21

               
               
               Conread position:592-941
               
               
               Cow position:chr4:47262381-47262728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 76

               
               
               Conread position:592-941
               
               
               Cow position:chr4:51727925-51728265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):166, 31

               
               
               Conread position:592-941
               
               
               Cow position:chr4:52823556-52823211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:255
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):32, 55

               
               
               Conread position:592-941
               
               
               Cow position:chr4:56590884-56591233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 115

               
               
               Conread position:592-944
               
               
               Cow position:chr4:34383498-34383142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 117

               
               
               Conread position:592-949
               
               
               Cow position:chr4:2885695-2885347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):34, 15

               
               
               Conread position:592-949
               
               
               Cow position:chr4:12034108-12034469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):24, 140

               
               
               Conread position:592-949
               
               
               Cow position:chr4:17833056-17832695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:250
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):28, 56

               
               
               Conread position:592-949
               
               
               Cow position:chr4:21058533-21058181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):34, 53

               
               
               Conread position:592-950
               
               
               Cow position:chr4:11187302-11187654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):33, 73

               
               
               Conread position:592-950
               
               
               Cow position:chr4:22713642-22713295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 78

               
               
               Conread position:592-950
               
               
               Cow position:chr4:27664858-27665217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 107

               
               
               Conread position:592-951
               
               
               Cow position:chr4:13327105-13326751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 103

               
               
               Conread position:592-951
               
               
               Cow position:chr4:13344395-13344737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:250
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):132, 31

               
               
               Conread position:592-951
               
               
               Cow position:chr4:65919462-65919818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):263, 31

               
               
               Conread position:592-952
               
               
               Cow position:chr4:43148256-43148622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:252
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):34, 64

               
               
               Conread position:592-952
               
               
               Cow position:chr4:68569804-68569442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:248
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):132, 110

               
               
               Conread position:592-954
               
               
               Cow position:chr4:18095825-18095457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):31, 119

               
               
               Conread position:592-959
               
               
               Cow position:chr4:2893873-2894249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:249
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):34, 117

               
               
               Conread position:592-959
               
               
               Cow position:chr4:9795525-9795168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:245
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):34, 70

               
               
               Conread position:593-753
               
               
               Cow position:chr4:48137760-48137919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):129, 113

               
               
               Conread position:593-764
               
               
               Cow position:chr4:47047743-47047913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:593-813
               
               
               Cow position:chr4:44973486-44973701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:593-817
               
               
               Cow position:chr4:54930575-54930351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):26, 128

               
               
               Conread position:593-831
               
               
               Cow position:chr4:65432000-65432235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):133, 31

               
               
               Conread position:593-860
               
               
               Cow position:chr4:69543028-69543296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):39, 133

               
               
               Conread position:593-864
               
               
               Cow position:chr4:41441417-41441683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):65, 78

               
               
               Conread position:593-869
               
               
               Cow position:chr4:33433414-33433135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):116, 30

               
               
               Conread position:593-873
               
               
               Cow position:chr4:46591514-46591795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:199
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):132, 109

               
               
               Conread position:593-918
               
               
               Cow position:chr4:58423965-58423628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:593-922
               
               
               Cow position:chr4:19097139-19097463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 30

               
               
               Conread position:593-927
               
               
               Cow position:chr4:45738628-45738291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):61, 34

               
               
               Conread position:593-930
               
               
               Cow position:chr4:68764365-68764699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:238
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):26, 110

               
               
               Conread position:593-936
               
               
               Cow position:chr4:3340801-3341141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):130, 30

               
               
               Conread position:593-937
               
               
               Cow position:chr4:19316151-19315820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:239
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):240, 22

               
               
               Conread position:593-940
               
               
               Cow position:chr4:48485854-48486186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):130, 30

               
               
               Conread position:593-941
               
               
               Cow position:chr4:34022737-34022395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:239
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):104, 30

               
               
               Conread position:593-941
               
               
               Cow position:chr4:46060795-46061139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:242
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):269, 68

               
               
               Conread position:593-941
               
               
               Cow position:chr4:49629333-49629677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):173, 35

               
               
               Conread position:593-941
               
               
               Cow position:chr4:68889707-68889388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):129, 30

               
               
               Conread position:593-945
               
               
               Cow position:chr4:23451248-23450894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:244
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):26, 99

               
               
               Conread position:593-948
               
               
               Cow position:chr4:13693824-13693476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:244
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):130, 30

               
               
               Conread position:593-948
               
               
               Cow position:chr4:27632300-27632639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 30

               
               
               Conread position:593-949
               
               
               Cow position:chr4:19265426-19265776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:243
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):30, 52

               
               
               Conread position:593-949
               
               
               Cow position:chr4:42673025-42673375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):123, 34

               
               
               Conread position:593-949
               
               
               Cow position:chr4:57721908-57722261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):30, 62

               
               
               Conread position:593-950
               
               
               Cow position:chr4:22236631-22236285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:252
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):129, 121

               
               
               Conread position:593-951
               
               
               Cow position:chr4:51898857-51899222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:254
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):137, 30

               
               
               Conread position:593-957
               
               
               Cow position:chr4:33091229-33091585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):129, 92

               
               
               Conread position:593-958
               
               
               Cow position:chr4:10968537-10968190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:255
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):34, 66

               
               
               Conread position:593-960
               
               
               Cow position:chr4:62471922-62472284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:258
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):75, 30

               
               
               Conread position:594-860
               
               
               Cow position:chr4:65175288-65175031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):136, 49

               
               
               Conread position:594-879
               
               
               Cow position:chr4:26400811-26401087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):32, 107

               
               
               Conread position:594-918
               
               
               Cow position:chr4:36396271-36395958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):32, 51

               
               
               Conread position:594-950
               
               
               Cow position:chr4:48409415-48409085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):136, 29

               
               
               Conread position:594-958
               
               
               Cow position:chr4:34209880-34210248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:260
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):32, 125

               
               
               Conread position:594-959
               
               
               Cow position:chr4:40414777-40414421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 29

               
               
               Conread position:595-837
               
               
               Cow position:chr4:3850408-3850643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):238, 28

               
               
               Conread position:595-936
               
               
               Cow position:chr4:32259999-32259653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):22, 54

               
               
               Conread position:595-947
               
               
               Cow position:chr4:34166126-34165791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:252
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):121, 150

               
               
               Conread position:595-956
               
               
               Cow position:chr4:45249828-45250179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:246
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:596-743
               
               
               Cow position:chr4:49089641-49089788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):10, 20

               
               
               Conread position:596-842
               
               
               Cow position:chr4:48143679-48143934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:596-848
               
               
               Cow position:chr4:56570658-56570908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):33, 111

               
               
               Conread position:596-858
               
               
               Cow position:chr4:8133686-8133429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):127, 87

               
               
               Conread position:596-903
               
               
               Cow position:chr4:6653582-6653877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):126, 31

               
               
               Conread position:596-927
               
               
               Cow position:chr4:54171475-54171802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 115

               
               
               Conread position:596-936
               
               
               Cow position:chr4:20027248-20026919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):107, 50

               
               
               Conread position:596-937
               
               
               Cow position:chr4:36577777-36577424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:253
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):119, 27

               
               
               Conread position:596-941
               
               
               Cow position:chr4:656963-656617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):63, 148

               
               
               Conread position:596-945
               
               
               Cow position:chr4:25197644-25197295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 92

               
               
               Conread position:597-745
               
               
               Cow position:chr4:1237263-1237115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):89, 108

               
               
               Conread position:597-839
               
               
               Cow position:chr4:14944913-14945156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):125, 29

               
               
               Conread position:597-936
               
               
               Cow position:chr4:1026371-1026052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:224
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):126, 26

               
               
               Conread position:597-939
               
               
               Cow position:chr4:17186499-17186159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 26

               
               
               Conread position:597-950
               
               
               Cow position:chr4:54927586-54927230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):133, 27

               
               
               Conread position:597-951
               
               
               Cow position:chr4:66256535-66256880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:254
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):19, 105

               
               
               Conread position:597-955
               
               
               Cow position:chr4:3283593-3283248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):100, 26

               
               
               Conread position:598-929
               
               
               Cow position:chr4:4826980-4827312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:237
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):27, 98

               
               
               Conread position:598-936
               
               
               Cow position:chr4:19699961-19700293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:244
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):124, 25

               
               
               Conread position:598-946
               
               
               Cow position:chr4:37313025-37313363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:243
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):258, 25

               
               
               Conread position:598-959
               
               
               Cow position:chr4:18756288-18756644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):128, 26

               
               
               Conread position:599-843
               
               
               Cow position:chr4:58881107-58880864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):142, 24

               
               
               Conread position:600-942
               
               
               Cow position:chr4:68387648-68387980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):120, 23

               
               
               Conread position:601-945
               
               
               Cow position:chr4:46258343-46258690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:231
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):69, 74

               
               
               Conread position:604-865
               
               
               Cow position:chr4:37344568-37344309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:171
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):126, 27

               
               
               Conread position:604-937
               
               
               Cow position:chr4:54872166-54871836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):118, 63

               
               
               Conread position:604-944
               
               
               Cow position:chr4:7964795-7964453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:237
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):22, 47

               
               
               Conread position:606-959
               
               
               Cow position:chr4:16118884-16118517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:253
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):20, 58

               
               
               Conread position:607-766
               
               
               Cow position:chr4:26011716-26011870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):115, 16

               
               
               Conread position:607-820
               
               
               Cow position:chr4:16799324-16799112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):96, 16

               
               
               Conread position:607-874
               
               
               Cow position:chr4:11272230-11271965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):153, 77

               
               
               Conread position:607-918
               
               
               Cow position:chr4:25537409-25537718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):114, 16

               
               
               Conread position:607-937
               
               
               Cow position:chr4:21874038-21874365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):115, 16

               
               
               Conread position:607-941
               
               
               Cow position:chr4:12030710-12031039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:236
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):148, 88

               
               
               Conread position:607-947
               
               
               Cow position:chr4:46383502-46383168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):123, 10

               
               
               Conread position:608-853
               
               
               Cow position:chr4:15134347-15134092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):13, 76

               
               
               Conread position:609-957
               
               
               Cow position:chr4:7043958-7043610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:239
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):123, 84

               
               
               Conread position:610-937
               
               
               Cow position:chr4:52832151-52831828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:226
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):115, 13

               
               
               Conread position:611-832
               
               
               Cow position:chr4:13026166-13026390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):10, 140

               
               
               Conread position:611-839
               
               
               Cow position:chr4:18107292-18107067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):12, 96

               
               
               Conread position:611-937
               
               
               Cow position:chr4:65265443-65265102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):89, 20

               
               
               Conread position:612-854
               
               
               Cow position:chr4:59101647-59101404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):14, 91

               
               
               Conread position:612-855
               
               
               Cow position:chr4:24481795-24481564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):112, 6

               
               
               Conread position:612-924
               
               
               Cow position:chr4:57584376-57584065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:208
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):114, 94

               
               
               Conread position:612-951
               
               
               Cow position:chr4:56499012-56498669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):8, 35

               
               
               Conread position:613-752
               
               
               Cow position:chr4:30929470-30929608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):113, 91

               
               
               Conread position:613-873
               
               
               Cow position:chr4:48173008-48173263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):109, 71

               
               
               Conread position:613-951
               
               
               Cow position:chr4:14994023-14994375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):89, 50

               
               
               Conread position:614-847
               
               
               Cow position:chr4:46183279-46183514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):12, 82

               
               
               Conread position:615-874
               
               
               Cow position:chr4:47280010-47280255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:615-959
               
               
               Cow position:chr4:48770442-48770784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:226
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):139, 94

               
               
               Conread position:617-941
               
               
               Cow position:chr4:37732609-37732288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 9

               
               
               Conread position:617-960
               
               
               Cow position:chr4:11610747-11611073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:236
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):12, 91

               
               
               Conread position:618-929
               
               
               Cow position:chr4:14500379-14500068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):83, 51

               
               
               Conread position:618-951
               
               
               Cow position:chr4:4085248-4084907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):12, 95

               
               
               Conread position:618-956
               
               
               Cow position:chr4:25226825-25227143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):104, 8

               
               
               Conread position:618-960
               
               
               Cow position:chr4:59873305-59873636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):106, 79

               
               
               Conread position:619-872
               
               
               Cow position:chr4:10905590-10905344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):107, 83

               
               
               Conread position:619-904
               
               
               Cow position:chr4:45073939-45074213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):235, 65

               
               
               Conread position:619-937
               
               
               Cow position:chr4:13222307-13221993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:225
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):262, 27

               
               
               Conread position:619-940
               
               
               Cow position:chr4:1419097-1419414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):103, 95

               
               
               Conread position:619-941
               
               
               Cow position:chr4:45636039-45636363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):52, 29

               
               
               Conread position:619-945
               
               
               Cow position:chr4:19578278-19578578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:230
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):171, 22

               
               
               Conread position:620-959
               
               
               Cow position:chr4:38946084-38946429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:237
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):97, 85

               
               
               Conread position:620-960
               
               
               Cow position:chr4:50194574-50194903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):78, 64

               
               
               Conread position:621-951
               
               
               Cow position:chr4:12473727-12474051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):39, 23

               
               
               Conread position:621-955
               
               
               Cow position:chr4:45837750-45837421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):88, 22

               
               
               Conread position:624-959
               
               
               Cow position:chr4:5577323-5577007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):106, 29

               
               
               Conread position:624-959
               
               
               Cow position:chr4:52779732-52780056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:240
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):206, 78

               
               
               Conread position:627-937
               
               
               Cow position:chr4:46494179-46494488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):43, 49

               
               
               Conread position:627-941
               
               
               Cow position:chr4:14940282-14940595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):99, 128

               
               
               Conread position:627-951
               
               
               Cow position:chr4:22546955-22546640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):312, 81

               
               
               Conread position:628-959
               
               
               Cow position:chr4:16513636-16513318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):127, 74

               
               
               Conread position:629-945
               
               
               Cow position:chr4:213904-214205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:206
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):87, 37

               
               
               Conread position:629-951
               
               
               Cow position:chr4:37675500-37675828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):73, 83

               
               
               Conread position:629-951
               
               
               Cow position:chr4:38157206-38156892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):75, 86

               
               
               Conread position:631-915
               
               
               Cow position:chr4:12901667-12901390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:631-939
               
               
               Cow position:chr4:25354420-25354717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:211
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):7, 65

               
               
               Conread position:636-941
               
               
               Cow position:chr4:2774609-2774914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):131, 66

               
               
               Conread position:637-941
               
               
               Cow position:chr4:46136644-46136940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):93, 65

               
               
               Conread position:637-951
               
               
               Cow position:chr4:41899874-41900167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):288, 56

               
               
               Conread position:638-939
               
               
               Cow position:chr4:24093246-24092942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):92, 66

               
               
               Conread position:639-951
               
               
               Cow position:chr4:19573183-19573490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):203, 7

               
               
               Conread position:639-952
               
               
               Cow position:chr4:46566580-46566269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):19, 83

               
               
               Conread position:640-941
               
               
               Cow position:chr4:54789535-54789833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:641-941
               
               
               Cow position:chr4:10895925-10895637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):126, 13

               
               
               Conread position:644-959
               
               
               Cow position:chr4:63952264-63951955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):53, 19

               
               
               Conread position:645-948
               
               
               Cow position:chr4:19292620-19292912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:219
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):11, 62

               
               
               Conread position:646-949
               
               
               Cow position:chr4:32693686-32693987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):84, 212

               
               
               Conread position:650-936
               
               
               Cow position:chr4:44184205-44183934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):54, 65

               
               
               Conread position:650-959
               
               
               Cow position:chr4:20143002-20142705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:650-960
               
               
               Cow position:chr4:45799780-45800093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):215, 35

               
               
               Conread position:652-937
               
               
               Cow position:chr4:19102977-19102689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:652-959
               
               
               Cow position:chr4:44773138-44772829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 64

               
               
               Conread position:652-959
               
               
               Cow position:chr4:45626714-45626427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:653-949
               
               
               Cow position:chr4:60131131-60131428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):69, 234

               
               
               Conread position:653-956
               
               
               Cow position:chr4:38822409-38822111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):21, 16

               
               
               Conread position:657-914
               
               
               Cow position:chr4:61188957-61188702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):65, 38

               
               
               Conread position:657-960
               
               
               Cow position:chr4:19199379-19199074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:214
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):14, 60

               
               
               Conread position:658-951
               
               
               Cow position:chr4:26644650-26644948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):43, 170

               
               
               Conread position:659-875
               
               
               Cow position:chr4:19098380-19098601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):45, 51

               
               
               Conread position:659-949
               
               
               Cow position:chr4:21866383-21866680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:192
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):67, 50

               
               
               Conread position:665-951
               
               
               Cow position:chr4:33181455-33181747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):40, 248

               
               
               Conread position:666-929
               
               
               Cow position:chr4:63916719-63916458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):44, 24

               
               
               Conread position:666-960
               
               
               Cow position:chr4:45705967-45706251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):64, 36

               
               
               Conread position:673-884
               
               
               Cow position:chr4:54921159-54920951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):57, 36

               
               
               Conread position:673-941
               
               
               Cow position:chr4:66380414-66380145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):32, 43

               
               
               Conread position:673-949
               
               
               Cow position:chr4:2940649-2940921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):57, 13

               
               
               Conread position:673-949
               
               
               Cow position:chr4:23190740-23190470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):267, 31

               
               
               Conread position:673-951
               
               
               Cow position:chr4:65549104-65548831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):44, 33

               
               
               Conread position:673-957
               
               
               Cow position:chr4:8182711-8182427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):57, 17

               
               
               Conread position:673-957
               
               
               Cow position:chr4:60719028-60719298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):50, 41

               
               
               Conread position:674-937
               
               
               Cow position:chr4:26012326-26012599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):56, 34

               
               
               Conread position:674-937
               
               
               Cow position:chr4:26830632-26830905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):56, 34

               
               
               Conread position:674-937
               
               
               Cow position:chr4:62370246-62370496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):56, 31

               
               
               Conread position:674-951
               
               
               Cow position:chr4:47748344-47748616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):10, 23

               
               
               Conread position:675-956
               
               
               Cow position:chr4:47038697-47038975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):55, 31

               
               
               Conread position:676-959
               
               
               Cow position:chr4:48422807-48423083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):46, 26

               
               
               Conread position:680-937
               
               
               Cow position:chr4:19485235-19485492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):44, 16

               
               
               Conread position:680-959
               
               
               Cow position:chr4:28841350-28841630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):50, 35

               
               
               Conread position:686-951
               
               
               Cow position:chr4:47125905-47125637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):44, 20

               
               
               Conread position:692-941
               
               
               Cow position:chr4:46435270-46435525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):17, 10

               
               
               Conread position:692-951
               
               
               Cow position:chr4:38210030-38209772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):18, 10

               
               
               Conread position:693-941
               
               
               Cow position:chr4:65173049-65173293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):20, 9

               
               
               Conread position:694-958
               
               
               Cow position:chr4:19431749-19431482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):29, 202

               
               
               Conread position:696-948
               
               
               Cow position:chr4:1923284-1923532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):153, 10

               
               
               Conread position:696-949
               
               
               Cow position:chr4:2680236-2680488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):34, 10

               
               
               Conread position:697-928
               
               
               Cow position:chr4:60506226-60506454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):26, 58

               
               
               Conread position:703-941
               
               
               Cow position:chr4:1646136-1645892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):19, 144

               
               
               Conread position:703-947
               
               
               Cow position:chr4:45874509-45874266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):27, 13

               
               
               Conread position:703-955
               
               
               Cow position:chr4:44854333-44854080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):20, 11

               
               
               Conread position:705-941
               
               
               Cow position:chr4:46883716-46883476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:706-959
               
               
               Cow position:chr4:32561790-32562042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):244, 16

               
               
               Conread position:707-959
               
               
               Cow position:chr4:7698226-7698475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):23, 85

               
               
               Conread position:707-959
               
               
               Cow position:chr4:31177786-31178031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:709-941
               
               
               Cow position:chr4:59002177-59001947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):17, 75

               
               
               Conread position:709-944
               
               
               Cow position:chr4:11901192-11900957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):21, 7

               
               
               Conread position:709-950
               
               
               Cow position:chr4:54391055-54390814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:710-928
               
               
               Cow position:chr4:65885465-65885680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):14, 73

               
               
               Conread position:710-941
               
               
               Cow position:chr4:10558499-10558727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):14, 133

               
               
               Conread position:710-958
               
               
               Cow position:chr4:47305040-47305288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):20, 234

               
               
               Conread position:711-940
               
               
               Cow position:chr4:3853436-3853669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:711-941
               
               
               Cow position:chr4:67393058-67393286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:711-941
               
               
               Cow position:chr4:69169610-69169840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):51, 65

               
               
               Conread position:711-945
               
               
               Cow position:chr4:26960005-26959771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):19, 142

               
               
               Conread position:711-948
               
               
               Cow position:chr4:60303051-60302817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):12, 111

               
               
               Conread position:711-951
               
               
               Cow position:chr4:65463536-65463312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:712-935
               
               
               Cow position:chr4:18951938-18952163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:712-944
               
               
               Cow position:chr4:2681299-2681523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:714-941
               
               
               Cow position:chr4:40995698-40995925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):16, 62

               
               
               Conread position:714-951
               
               
               Cow position:chr4:16221910-16221671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):5, 201

               
               
               Conread position:715-958
               
               
               Cow position:chr4:56745960-56746201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):34, 43

               
               
               Conread position:715-959
               
               
               Cow position:chr4:58018312-58018551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):15, 33

               
               
               Conread position:716-929
               
               
               Cow position:chr4:12047841-12048057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):8, 161

               
               
               Conread position:716-950
               
               
               Cow position:chr4:68590747-68590969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:718-955
               
               
               Cow position:chr4:13918953-13919184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):201, 54

               
               
               Conread position:719-939
               
               
               Cow position:chr4:27699005-27699229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):157, 28

               
               
               Conread position:721-948
               
               
               Cow position:chr4:19333361-19333580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):47, 55

               
               
               Conread position:721-950
               
               
               Cow position:chr4:6094091-6093862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):219, 88

               
               
               Conread position:723-940
               
               
               Cow position:chr4:33838823-33838613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:723-951
               
               
               Cow position:chr4:60527157-60527383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):215, 138

               
               
               Conread position:724-928
               
               
               Cow position:chr4:51192945-51193154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:724-947
               
               
               Cow position:chr4:39847706-39847929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):52, 84

               
               
               Conread position:724-949
               
               
               Cow position:chr4:27521531-27521759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):123, 40

               
               
               Conread position:724-949
               
               
               Cow position:chr4:45213212-45212987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):46, 113

               
               
               Conread position:724-950
               
               
               Cow position:chr4:31594784-31594558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):222, 77

               
               
               Conread position:724-951
               
               
               Cow position:chr4:18099084-18098860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:724-951
               
               
               Cow position:chr4:19539259-19539031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):140, 202

               
               
               Conread position:724-954
               
               
               Cow position:chr4:386414-386190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:724-959
               
               
               Cow position:chr4:57566703-57566484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):215, 44

               
               
               Conread position:724-960
               
               
               Cow position:chr4:69290765-69290527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):44, 52

               
               
               Conread position:725-948
               
               
               Cow position:chr4:36717462-36717684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):109, 50

               
               
               Conread position:729-941
               
               
               Cow position:chr4:21161088-21161296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:730-959
               
               
               Cow position:chr4:61608981-61608759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:731-930
               
               
               Cow position:chr4:19325244-19325443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:731-941
               
               
               Cow position:chr4:29318091-29317877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):112, 189

               
               
               Conread position:731-945
               
               
               Cow position:chr4:51986594-51986379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:731-950
               
               
               Cow position:chr4:19496479-19496704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):34, 43

               
               
               Conread position:732-939
               
               
               Cow position:chr4:41907596-41907393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:732-941
               
               
               Cow position:chr4:50368395-50368603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):153, 0

               
               
               Conread position:732-945
               
               
               Cow position:chr4:617392-617182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:736-959
               
               
               Cow position:chr4:42080712-42080496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:738-959
               
               
               Cow position:chr4:4647391-4647609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):155, 0

               
               
               Conread position:741-949
               
               
               Cow position:chr4:53347977-53347782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:741-952
               
               
               Cow position:chr4:17790297-17790094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:741-955
               
               
               Cow position:chr4:12245207-12245417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):199, 54

               
               
               Conread position:741-959
               
               
               Cow position:chr4:63078217-63078435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:744-950
               
               
               Cow position:chr4:61887634-61887840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):180, 196

               
               
               Conread position:747-929
               
               
               Cow position:chr4:27511545-27511727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:747-945
               
               
               Cow position:chr4:23059855-23059657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):107, 115

               
               
               Conread position:747-959
               
               
               Cow position:chr4:42347485-42347696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:747-960
               
               
               Cow position:chr4:47230997-47230786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):158, 0

               
               
               Conread position:747-960
               
               
               Cow position:chr4:47284012-47283802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):158, 0

               
               
               Conread position:748-958
               
               
               Cow position:chr4:348423-348224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:748-958
               
               
               Cow position:chr4:56236550-56236345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):192, 102

               
               
               Conread position:750-937
               
               
               Cow position:chr4:42044971-42044788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:757-945
               
               
               Cow position:chr4:51083327-51083145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):152, 89

               
               
               Conread position:757-958
               
               
               Cow position:chr4:23799755-23799542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):78, 117

               
               
               Conread position:757-958
               
               
               Cow position:chr4:50494782-50494987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:757-959
               
               
               Cow position:chr4:5250198-5250399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):196, 0

               
               
               Conread position:761-941
               
               
               Cow position:chr4:62794349-62794165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:763-951
               
               
               Cow position:chr4:16637058-16636875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:773-903
               
               
               Cow position:chr4:22051089-22050959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:773-929
               
               
               Cow position:chr4:11154295-11154452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:773-935
               
               
               Cow position:chr4:48137971-48138130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):158, 9

               
               
               Conread position:773-941
               
               
               Cow position:chr4:29247174-29247009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:773-941
               
               
               Cow position:chr4:30691031-30691193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):128, 9

               
               
               Conread position:773-941
               
               
               Cow position:chr4:58045608-58045441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:773-946
               
               
               Cow position:chr4:36709047-36709220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):81, 166

               
               
               Conread position:773-948
               
               
               Cow position:chr4:39010076-39010251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):91, 72

               
               
               Conread position:773-952
               
               
               Cow position:chr4:47417439-47417615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:773-954
               
               
               Cow position:chr4:46656156-46656338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:773-958
               
               
               Cow position:chr4:45483825-45484011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):84, 72

               
               
               Conread position:774-924
               
               
               Cow position:chr4:68808081-68807931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:774-929
               
               
               Cow position:chr4:11901482-11901327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:774-935
               
               
               Cow position:chr4:60370501-60370341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):110, 74

               
               
               Conread position:774-937
               
               
               Cow position:chr4:50131544-50131709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:774-941
               
               
               Cow position:chr4:19420729-19420564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:774-941
               
               
               Cow position:chr4:23271310-23271475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:774-941
               
               
               Cow position:chr4:30769063-30769223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:774-941
               
               
               Cow position:chr4:45773490-45773657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:774-941
               
               
               Cow position:chr4:54937109-54937285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:774-941
               
               
               Cow position:chr4:56395540-56395707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:774-948
               
               
               Cow position:chr4:23807977-23808157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):80, 144

               
               
               Conread position:774-949
               
               
               Cow position:chr4:50837729-50837904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):160, 83

               
               
               Conread position:774-955
               
               
               Cow position:chr4:42374128-42373950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:774-958
               
               
               Cow position:chr4:25802718-25802903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):165, 0

               
               
               Conread position:774-959
               
               
               Cow position:chr4:34919242-34919062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):165, 24

               
               
               Conread position:774-960
               
               
               Cow position:chr4:30943982-30944166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):168, 78

               
               
               Conread position:775-937
               
               
               Cow position:chr4:28854246-28854089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:775-944
               
               
               Cow position:chr4:33388885-33389056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:775-945
               
               
               Cow position:chr4:45963912-45964086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:775-945
               
               
               Cow position:chr4:46235131-46234967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:775-949
               
               
               Cow position:chr4:38358796-38358628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:775-951
               
               
               Cow position:chr4:11185992-11186169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):165, 0

               
               
               Conread position:775-951
               
               
               Cow position:chr4:28660522-28660345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):102, 91

               
               
               Conread position:775-951
               
               
               Cow position:chr4:37991618-37991792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):164, 84

               
               
               Conread position:775-951
               
               
               Cow position:chr4:50687832-50687664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:775-951
               
               
               Cow position:chr4:68776964-68777142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):56, 100

               
               
               Conread position:775-955
               
               
               Cow position:chr4:20282270-20282444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):15, 64

               
               
               Conread position:775-958
               
               
               Cow position:chr4:41098964-41099141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):79, 121

               
               
               Conread position:775-959
               
               
               Cow position:chr4:2713831-2713650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:775-959
               
               
               Cow position:chr4:3299762-3299587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):164, 36

               
               
               Conread position:775-959
               
               
               Cow position:chr4:5790671-5790856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):171, 0

               
               
               Conread position:775-959
               
               
               Cow position:chr4:30172199-30172018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):46, 131

               
               
               Conread position:775-960
               
               
               Cow position:chr4:8352536-8352350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):164, 82

               
               
               Conread position:775-960
               
               
               Cow position:chr4:20153520-20153344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:776-937
               
               
               Cow position:chr4:38940913-38940755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):69, 98

               
               
               Conread position:776-941
               
               
               Cow position:chr4:51617969-51617805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:776-951
               
               
               Cow position:chr4:53050022-53050196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:776-951
               
               
               Cow position:chr4:61524462-61524631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:776-959
               
               
               Cow position:chr4:45801545-45801727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:778-937
               
               
               Cow position:chr4:14020528-14020686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):52, 40

               
               
               Conread position:779-952
               
               
               Cow position:chr4:45723278-45723451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):119, 130

               
               
               Conread position:780-937
               
               
               Cow position:chr4:34722854-34722697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:780-941
               
               
               Cow position:chr4:8675403-8675558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:780-941
               
               
               Cow position:chr4:19542970-19543134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:780-951
               
               
               Cow position:chr4:38949503-38949327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:780-952
               
               
               Cow position:chr4:61451247-61451418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):91, 164

               
               
               Conread position:780-955
               
               
               Cow position:chr4:19200146-19200311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:781-936
               
               
               Cow position:chr4:27691638-27691484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:781-951
               
               
               Cow position:chr4:44927505-44927340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):156, 9

               
               
               Conread position:782-941
               
               
               Cow position:chr4:35974398-35974558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:782-944
               
               
               Cow position:chr4:17076243-17076083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):78, 19

               
               
               Conread position:782-949
               
               
               Cow position:chr4:49808553-49808717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:783-950
               
               
               Cow position:chr4:12908410-12908568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:783-951
               
               
               Cow position:chr4:16091280-16091116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):6, 41

               
               
               Conread position:783-959
               
               
               Cow position:chr4:36876821-36876647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):108, 22

               
               
               Conread position:783-960
               
               
               Cow position:chr4:56852884-56853061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):75, 127

               
               
               Conread position:784-951
               
               
               Cow position:chr4:14131464-14131625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):8, 81

               
               
               Conread position:784-956
               
               
               Cow position:chr4:6073017-6072845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:784-958
               
               
               Cow position:chr4:59557478-59557649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):156, 66

               
               
               Conread position:786-959
               
               
               Cow position:chr4:27657016-27657179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:787-944
               
               
               Cow position:chr4:46176258-46176101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:787-951
               
               
               Cow position:chr4:63293500-63293659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:787-954
               
               
               Cow position:chr4:54315185-54315017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):78, 71

               
               
               Conread position:788-946
               
               
               Cow position:chr4:42608780-42608935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:789-941
               
               
               Cow position:chr4:19463587-19463739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):76, 48

               
               
               Conread position:789-951
               
               
               Cow position:chr4:53941754-53941592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):41, 36

               
               
               Conread position:790-959
               
               
               Cow position:chr4:30935320-30935149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:791-951
               
               
               Cow position:chr4:19496941-19496778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):24, 68

               
               
               Conread position:791-959
               
               
               Cow position:chr4:63198327-63198156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:792-945
               
               
               Cow position:chr4:7816338-7816496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:793-937
               
               
               Cow position:chr4:44024496-44024352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):67, 30

               
               
               Conread position:811-960
               
               
               Cow position:chr4:26183196-26183346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):128, 121

               
               
               Conread position:815-950
               
               
               Cow position:chr4:43436331-43436467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:817-959
               
               
               Cow position:chr4:47035654-47035512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:823-949
               
               
               Cow position:chr4:45629970-45629845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:858-959
               
               
               Cow position:chr4:64336170-64336069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:85
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:548-948
               
               
               Cow position:chr5:35459460-35459063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 79

               
               
               Conread position:554-949
               
               
               Cow position:chr5:52126619-52127006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:267
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):17, 32

               
               
               Conread position:559-947
               
               
               Cow position:chr5:18288979-18289352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 9

               
               
               Conread position:565-853
               
               
               Cow position:chr5:45273645-45273362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):157, 20

               
               
               Conread position:565-875
               
               
               Cow position:chr5:43992172-43992488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:224
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):22, 151

               
               
               Conread position:565-959
               
               
               Cow position:chr5:41303239-41302833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:258
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):28, 66

               
               
               Conread position:566-700
               
               
               Cow position:chr5:16184942-16185076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:103
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):26, 59

               
               
               Conread position:566-850
               
               
               Cow position:chr5:64758914-64758631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):138, 31

               
               
               Conread position:566-937
               
               
               Cow position:chr5:66257494-66257856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:252
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):21, 58

               
               
               Conread position:566-941
               
               
               Cow position:chr5:9894274-9893899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:258
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):33, 58

               
               
               Conread position:566-941
               
               
               Cow position:chr5:18574023-18574408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:268
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):11, 76

               
               
               Conread position:566-946
               
               
               Cow position:chr5:30302748-30303112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:261
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):26, 58

               
               
               Conread position:566-951
               
               
               Cow position:chr5:32975699-32975321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:260
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):27, 131

               
               
               Conread position:566-959
               
               
               Cow position:chr5:4280316-4280685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:277
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):27, 61

               
               
               Conread position:568-876
               
               
               Cow position:chr5:60715505-60715205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:209
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):7, 62

               
               
               Conread position:569-834
               
               
               Cow position:chr5:50637685-50637942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):39, 75

               
               
               Conread position:569-957
               
               
               Cow position:chr5:21828724-21829106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 55

               
               
               Conread position:571-848
               
               
               Cow position:chr5:39258384-39258640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):11, 23

               
               
               Conread position:574-713
               
               
               Cow position:chr5:35145213-35145351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:104
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:574-736
               
               
               Cow position:chr5:7140248-7140083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):13, 138

               
               
               Conread position:574-736
               
               
               Cow position:chr5:34115514-34115676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):152, 50

               
               
               Conread position:574-752
               
               
               Cow position:chr5:51801113-51800933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):23, 125

               
               
               Conread position:574-760
               
               
               Cow position:chr5:24485574-24485387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):19, 51

               
               
               Conread position:574-804
               
               
               Cow position:chr5:34300779-34301003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):18, 52

               
               
               Conread position:574-831
               
               
               Cow position:chr5:58793754-58793489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):11, 54

               
               
               Conread position:574-855
               
               
               Cow position:chr5:54350504-54350219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):51, 144

               
               
               Conread position:574-874
               
               
               Cow position:chr5:8162962-8162658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):19, 126

               
               
               Conread position:574-929
               
               
               Cow position:chr5:30267041-30266671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):34, 14

               
               
               Conread position:574-940
               
               
               Cow position:chr5:3771703-3772067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 104

               
               
               Conread position:574-941
               
               
               Cow position:chr5:34976983-34976614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):24, 140

               
               
               Conread position:574-952
               
               
               Cow position:chr5:41164950-41165320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 35

               
               
               Conread position:574-956
               
               
               Cow position:chr5:11668322-11667943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 125

               
               
               Conread position:574-958
               
               
               Cow position:chr5:42845744-42845355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:276
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):19, 154

               
               
               Conread position:575-848
               
               
               Cow position:chr5:18898845-18899108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):148, 16

               
               
               Conread position:575-941
               
               
               Cow position:chr5:23140715-23140362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:236
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):22, 99

               
               
               Conread position:575-950
               
               
               Cow position:chr5:32394459-32394837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 101

               
               
               Conread position:576-834
               
               
               Cow position:chr5:52645211-52644959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):192, 14

               
               
               Conread position:576-842
               
               
               Cow position:chr5:41452798-41452543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):16, 20

               
               
               Conread position:576-875
               
               
               Cow position:chr5:54060142-54060438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):146, 108

               
               
               Conread position:576-875
               
               
               Cow position:chr5:54768045-54767747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):16, 133

               
               
               Conread position:576-930
               
               
               Cow position:chr5:6504015-6503661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 73

               
               
               Conread position:576-930
               
               
               Cow position:chr5:37064966-37065314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):147, 15

               
               
               Conread position:576-935
               
               
               Cow position:chr5:60175338-60175706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:239
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):153, 11

               
               
               Conread position:576-936
               
               
               Cow position:chr5:20127922-20128275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 29

               
               
               Conread position:576-939
               
               
               Cow position:chr5:52905625-52905273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:226
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:576-941
               
               
               Cow position:chr5:7044842-7044480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 48

               
               
               Conread position:576-941
               
               
               Cow position:chr5:19778711-19778340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):147, 16

               
               
               Conread position:576-941
               
               
               Cow position:chr5:26262803-26262459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:253
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):134, 13

               
               
               Conread position:576-941
               
               
               Cow position:chr5:47756641-47756998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:250
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):43, 15

               
               
               Conread position:576-942
               
               
               Cow position:chr5:2309695-2309331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 107

               
               
               Conread position:576-957
               
               
               Cow position:chr5:72035218-72034856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:260
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):44, 15

               
               
               Conread position:576-959
               
               
               Cow position:chr5:17371835-17371452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:253
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):165, 15

               
               
               Conread position:576-960
               
               
               Cow position:chr5:16025592-16025239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:261
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):16, 48

               
               
               Conread position:576-960
               
               
               Cow position:chr5:55176759-55177127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:268
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):123, 13

               
               
               Conread position:577-739
               
               
               Cow position:chr5:9859847-9859685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):15, 43

               
               
               Conread position:577-748
               
               
               Cow position:chr5:62826888-62826717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):15, 47

               
               
               Conread position:577-791
               
               
               Cow position:chr5:32140842-32140630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):15, 48

               
               
               Conread position:577-809
               
               
               Cow position:chr5:56820396-56820168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):15, 50

               
               
               Conread position:577-809
               
               
               Cow position:chr5:67540337-67540105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):15, 47

               
               
               Conread position:577-829
               
               
               Cow position:chr5:31481016-31481264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):153, 11

               
               
               Conread position:577-843
               
               
               Cow position:chr5:65588569-65588830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):15, 47

               
               
               Conread position:577-846
               
               
               Cow position:chr5:58855969-58856235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):10, 48

               
               
               Conread position:577-855
               
               
               Cow position:chr5:72564627-72564906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):46, 133

               
               
               Conread position:577-927
               
               
               Cow position:chr5:26097161-26097502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:233
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):16, 89

               
               
               Conread position:577-938
               
               
               Cow position:chr5:11540182-11539829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 116

               
               
               Conread position:577-941
               
               
               Cow position:chr5:14904212-14903838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:263
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):10, 84

               
               
               Conread position:577-941
               
               
               Cow position:chr5:42050417-42050770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:253
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):15, 47

               
               
               Conread position:577-944
               
               
               Cow position:chr5:1247142-1247492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:257
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):15, 48

               
               
               Conread position:577-948
               
               
               Cow position:chr5:32153450-32153078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:246
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):19, 70

               
               
               Conread position:577-951
               
               
               Cow position:chr5:44848157-44847791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:260
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):66, 11

               
               
               Conread position:577-955
               
               
               Cow position:chr5:56028661-56028304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:260
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):15, 47

               
               
               Conread position:577-959
               
               
               Cow position:chr5:39936968-39937358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 69

               
               
               Conread position:578-855
               
               
               Cow position:chr5:45574484-45574762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):132, 18

               
               
               Conread position:578-941
               
               
               Cow position:chr5:26990260-26990613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):130, 47

               
               
               Conread position:578-941
               
               
               Cow position:chr5:36868608-36868963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:579-876
               
               
               Cow position:chr5:14473551-14473240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:224
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:579-948
               
               
               Cow position:chr5:76119422-76119772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):48, 14

               
               
               Conread position:579-958
               
               
               Cow position:chr5:16893902-16893536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:257
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:580-941
               
               
               Cow position:chr5:7057538-7057171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 128

               
               
               Conread position:580-948
               
               
               Cow position:chr5:52040447-52040084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):28, 5

               
               
               Conread position:580-959
               
               
               Cow position:chr5:19335916-19335533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 5

               
               
               Conread position:581-717
               
               
               Cow position:chr5:32956226-32956090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):11, 44

               
               
               Conread position:581-752
               
               
               Cow position:chr5:54405022-54404850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):11, 15

               
               
               Conread position:581-753
               
               
               Cow position:chr5:8994696-8994525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):11, 44

               
               
               Conread position:581-806
               
               
               Cow position:chr5:65601332-65601550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):45, 11

               
               
               Conread position:581-809
               
               
               Cow position:chr5:69520763-69520987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:581-850
               
               
               Cow position:chr5:52000092-52000355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):11, 44

               
               
               Conread position:581-851
               
               
               Cow position:chr5:75437023-75436750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):11, 95

               
               
               Conread position:581-941
               
               
               Cow position:chr5:35684808-35685159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:254
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):5, 43

               
               
               Conread position:581-941
               
               
               Cow position:chr5:45845822-45845464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 43

               
               
               Conread position:581-941
               
               
               Cow position:chr5:54048481-54048124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:236
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):22, 83

               
               
               Conread position:581-943
               
               
               Cow position:chr5:3492063-3492413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:243
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):16, 64

               
               
               Conread position:581-944
               
               
               Cow position:chr5:57768113-57767759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 129

               
               
               Conread position:581-949
               
               
               Cow position:chr5:35247240-35246873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 70

               
               
               Conread position:581-949
               
               
               Cow position:chr5:64140400-64140772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 78

               
               
               Conread position:581-951
               
               
               Cow position:chr5:47317100-47316738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:256
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):149, 47

               
               
               Conread position:581-952
               
               
               Cow position:chr5:25035372-25035017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:259
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):294, 42

               
               
               Conread position:581-956
               
               
               Cow position:chr5:45472139-45472515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:260
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):42, 144

               
               
               Conread position:582-868
               
               
               Cow position:chr5:65887140-65886856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):11, 118

               
               
               Conread position:582-939
               
               
               Cow position:chr5:22737975-22738321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:239
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):19, 145

               
               
               Conread position:585-727
               
               
               Cow position:chr5:18090598-18090738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:585-842
               
               
               Cow position:chr5:15722190-15721945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:585-842
               
               
               Cow position:chr5:74015815-74016069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):137, 38

               
               
               Conread position:585-866
               
               
               Cow position:chr5:63987576-63987292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):41, 68

               
               
               Conread position:585-875
               
               
               Cow position:chr5:9090145-9089866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:585-880
               
               
               Cow position:chr5:60747401-60747115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):112, 19

               
               
               Conread position:585-935
               
               
               Cow position:chr5:47704255-47703901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):38, 114

               
               
               Conread position:585-937
               
               
               Cow position:chr5:44994163-44993817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:241
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):137, 39

               
               
               Conread position:585-940
               
               
               Cow position:chr5:19278825-19278478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 38

               
               
               Conread position:585-941
               
               
               Cow position:chr5:25365961-25366325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):7, 255

               
               
               Conread position:585-941
               
               
               Cow position:chr5:47601694-47602034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:248
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:585-945
               
               
               Cow position:chr5:12434411-12434765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):107, 17

               
               
               Conread position:585-950
               
               
               Cow position:chr5:26467498-26467862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 38

               
               
               Conread position:585-950
               
               
               Cow position:chr5:65967853-65967503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):137, 38

               
               
               Conread position:585-954
               
               
               Cow position:chr5:30276572-30276926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):325, 38

               
               
               Conread position:585-955
               
               
               Cow position:chr5:4220858-4221211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):7, 40

               
               
               Conread position:585-959
               
               
               Cow position:chr5:65752731-65753102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 248

               
               
               Conread position:586-809
               
               
               Cow position:chr5:16508971-16509202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:586-875
               
               
               Cow position:chr5:44726450-44726171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):273, 37

               
               
               Conread position:587-949
               
               
               Cow position:chr5:61999664-61999322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:245
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):40, 5

               
               
               Conread position:589-937
               
               
               Cow position:chr5:49440993-49440630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):133, 30

               
               
               Conread position:591-700
               
               
               Cow position:chr5:19294605-19294500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:90
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:591-700
               
               
               Cow position:chr5:57271387-57271276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:591-706
               
               
               Cow position:chr5:72845900-72845785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:92
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:591-707
               
               
               Cow position:chr5:56433685-56433800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-735
               
               
               Cow position:chr5:72150128-72150272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):112, 32

               
               
               Conread position:591-736
               
               
               Cow position:chr5:7921519-7921381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:591-742
               
               
               Cow position:chr5:42744669-42744815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):136, 32

               
               
               Conread position:591-750
               
               
               Cow position:chr5:41486860-41486700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):32, 135

               
               
               Conread position:591-752
               
               
               Cow position:chr5:16179644-16179484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):118, 59

               
               
               Conread position:591-752
               
               
               Cow position:chr5:71579055-71579215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):130, 117

               
               
               Conread position:591-770
               
               
               Cow position:chr5:50972411-50972587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):35, 82

               
               
               Conread position:591-782
               
               
               Cow position:chr5:21964166-21964358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):35, 121

               
               
               Conread position:591-793
               
               
               Cow position:chr5:28926303-28926100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):23, 103

               
               
               Conread position:591-796
               
               
               Cow position:chr5:47313354-47313556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):35, 101

               
               
               Conread position:591-798
               
               
               Cow position:chr5:31144906-31144702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):139, 31

               
               
               Conread position:591-803
               
               
               Cow position:chr5:34638765-34638973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):52, 32

               
               
               Conread position:591-808
               
               
               Cow position:chr5:14629932-14629715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):118, 32

               
               
               Conread position:591-818
               
               
               Cow position:chr5:63865676-63865901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):118, 32

               
               
               Conread position:591-831
               
               
               Cow position:chr5:32696939-32696705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):111, 19

               
               
               Conread position:591-842
               
               
               Cow position:chr5:6045172-6045425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):108, 32

               
               
               Conread position:591-842
               
               
               Cow position:chr5:30950035-30949786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):139, 32

               
               
               Conread position:591-842
               
               
               Cow position:chr5:50821663-50821912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-842
               
               
               Cow position:chr5:57575650-57575903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-846
               
               
               Cow position:chr5:6528563-6528818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):95, 55

               
               
               Conread position:591-846
               
               
               Cow position:chr5:34463704-34463447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):121, 227

               
               
               Conread position:591-847
               
               
               Cow position:chr5:39875004-39875258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):37, 95

               
               
               Conread position:591-848
               
               
               Cow position:chr5:22643337-22643097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):15, 34

               
               
               Conread position:591-848
               
               
               Cow position:chr5:65933049-65932808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):38, 111

               
               
               Conread position:591-854
               
               
               Cow position:chr5:50215675-50215423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):172, 104

               
               
               Conread position:591-855
               
               
               Cow position:chr5:29771399-29771670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):124, 33

               
               
               Conread position:591-866
               
               
               Cow position:chr5:4032113-4031833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):32, 112

               
               
               Conread position:591-866
               
               
               Cow position:chr5:50533506-50533235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):124, 32

               
               
               Conread position:591-867
               
               
               Cow position:chr5:3204714-3204980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):38, 106

               
               
               Conread position:591-869
               
               
               Cow position:chr5:458363-458644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):31, 123

               
               
               Conread position:591-874
               
               
               Cow position:chr5:23168944-23168665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):120, 32

               
               
               Conread position:591-874
               
               
               Cow position:chr5:36255379-36255096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):30, 54

               
               
               Conread position:591-875
               
               
               Cow position:chr5:26477131-26476856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):113, 33

               
               
               Conread position:591-875
               
               
               Cow position:chr5:46509985-46509702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):129, 33

               
               
               Conread position:591-875
               
               
               Cow position:chr5:56317179-56317451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):229, 32

               
               
               Conread position:591-875
               
               
               Cow position:chr5:58490598-58490893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):122, 71

               
               
               Conread position:591-876
               
               
               Cow position:chr5:44752430-44752146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):123, 33

               
               
               Conread position:591-877
               
               
               Cow position:chr5:7755681-7755404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):254, 32

               
               
               Conread position:591-879
               
               
               Cow position:chr5:39094433-39094717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):35, 117

               
               
               Conread position:591-881
               
               
               Cow position:chr5:37814505-37814796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):94, 5

               
               
               Conread position:591-882
               
               
               Cow position:chr5:59115262-59115545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):52, 116

               
               
               Conread position:591-888
               
               
               Cow position:chr5:26094288-26093991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):34, 86

               
               
               Conread position:591-890
               
               
               Cow position:chr5:56680128-56680435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):37, 127

               
               
               Conread position:591-902
               
               
               Cow position:chr5:37646665-37646353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):66, 12

               
               
               Conread position:591-918
               
               
               Cow position:chr5:48829039-48829358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):35, 74

               
               
               Conread position:591-919
               
               
               Cow position:chr5:66366399-66366713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):110, 31

               
               
               Conread position:591-921
               
               
               Cow position:chr5:57419912-57419590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):23, 97

               
               
               Conread position:591-927
               
               
               Cow position:chr5:34049992-34050320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):35, 110

               
               
               Conread position:591-929
               
               
               Cow position:chr5:45397459-45397779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:233
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):139, 32

               
               
               Conread position:591-933
               
               
               Cow position:chr5:47696561-47696242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):109, 33

               
               
               Conread position:591-934
               
               
               Cow position:chr5:20779505-20779180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):139, 33

               
               
               Conread position:591-934
               
               
               Cow position:chr5:50599937-50600265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-935
               
               
               Cow position:chr5:67932583-67932246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:238
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):164, 33

               
               
               Conread position:591-936
               
               
               Cow position:chr5:65776501-65776156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:243
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):242, 33

               
               
               Conread position:591-937
               
               
               Cow position:chr5:29827930-29828270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 33

               
               
               Conread position:591-937
               
               
               Cow position:chr5:54311213-54311578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):32, 118

               
               
               Conread position:591-937
               
               
               Cow position:chr5:72895569-72895908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):133, 33

               
               
               Conread position:591-939
               
               
               Cow position:chr5:53835595-53835945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:244
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):132, 31

               
               
               Conread position:591-940
               
               
               Cow position:chr5:5111192-5110833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:238
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):219, 16

               
               
               Conread position:591-940
               
               
               Cow position:chr5:11229788-11229446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):122, 32

               
               
               Conread position:591-940
               
               
               Cow position:chr5:35235828-35235462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:262
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):131, 51

               
               
               Conread position:591-940
               
               
               Cow position:chr5:36855085-36855430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:231
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):135, 107

               
               
               Conread position:591-940
               
               
               Cow position:chr5:55966998-55966648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:249
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):130, 33

               
               
               Conread position:591-941
               
               
               Cow position:chr5:991347-991700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):208, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr5:3582456-3582781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:237
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:591-941
               
               
               Cow position:chr5:5257411-5257061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:236
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):89, 25

               
               
               Conread position:591-941
               
               
               Cow position:chr5:17087144-17086791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):60, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr5:21617339-21617681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr5:28224333-28224668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:245
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):35, 112

               
               
               Conread position:591-941
               
               
               Cow position:chr5:30629277-30628927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr5:34561893-34562235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:242
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):96, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr5:40889403-40889069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:241
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):35, 67

               
               
               Conread position:591-941
               
               
               Cow position:chr5:44028420-44028084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr5:47871166-47870828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:248
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):42, 127

               
               
               Conread position:591-941
               
               
               Cow position:chr5:57935228-57934894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:247
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):129, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr5:58519524-58519190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):38, 77

               
               
               Conread position:591-942
               
               
               Cow position:chr5:8024314-8023988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:244
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):131, 25

               
               
               Conread position:591-944
               
               
               Cow position:chr5:39333658-39333300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):155, 131

               
               
               Conread position:591-945
               
               
               Cow position:chr5:30253622-30253970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-945
               
               
               Cow position:chr5:55756550-55756183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:591-947
               
               
               Cow position:chr5:24348988-24349347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:244
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):131, 104

               
               
               Conread position:591-947
               
               
               Cow position:chr5:24996342-24995989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):253, 32

               
               
               Conread position:591-947
               
               
               Cow position:chr5:49919805-49920157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:239
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):162, 20

               
               
               Conread position:591-948
               
               
               Cow position:chr5:40109380-40109717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:248
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):132, 34

               
               
               Conread position:591-948
               
               
               Cow position:chr5:66972308-66972663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):268, 125

               
               
               Conread position:591-949
               
               
               Cow position:chr5:59048-58696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 55

               
               
               Conread position:591-949
               
               
               Cow position:chr5:3281716-3282071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):29, 53

               
               
               Conread position:591-949
               
               
               Cow position:chr5:30844994-30845342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:245
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):344, 32

               
               
               Conread position:591-949
               
               
               Cow position:chr5:34506045-34505690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:242
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):36, 54

               
               
               Conread position:591-949
               
               
               Cow position:chr5:36624114-36624485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):29, 57

               
               
               Conread position:591-949
               
               
               Cow position:chr5:42064079-42064440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 129

               
               
               Conread position:591-949
               
               
               Cow position:chr5:45409204-45409559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):31, 54

               
               
               Conread position:591-949
               
               
               Cow position:chr5:53055679-53055325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:239
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):35, 47

               
               
               Conread position:591-949
               
               
               Cow position:chr5:56070737-56071091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 32

               
               
               Conread position:591-949
               
               
               Cow position:chr5:57591575-57591918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):32, 55

               
               
               Conread position:591-950
               
               
               Cow position:chr5:27179543-27179900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:247
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):35, 54

               
               
               Conread position:591-950
               
               
               Cow position:chr5:44796849-44796499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):348, 16

               
               
               Conread position:591-950
               
               
               Cow position:chr5:58144723-58144369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:244
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):28, 123

               
               
               Conread position:591-951
               
               
               Cow position:chr5:17063210-17062843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 34

               
               
               Conread position:591-951
               
               
               Cow position:chr5:35969423-35969776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:257
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):131, 35

               
               
               Conread position:591-951
               
               
               Cow position:chr5:43858551-43858182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:260
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):106, 34

               
               
               Conread position:591-951
               
               
               Cow position:chr5:69461215-69461566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 33

               
               
               Conread position:591-952
               
               
               Cow position:chr5:41010112-41009773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):115, 32

               
               
               Conread position:591-955
               
               
               Cow position:chr5:35826484-35826835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:248
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):172, 32

               
               
               Conread position:591-957
               
               
               Cow position:chr5:14314406-14314758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:252
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):116, 32

               
               
               Conread position:591-957
               
               
               Cow position:chr5:55068591-55068941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:591-958
               
               
               Cow position:chr5:53855575-53855961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:271
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):30, 82

               
               
               Conread position:591-959
               
               
               Cow position:chr5:4322295-4322658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):178, 33

               
               
               Conread position:591-959
               
               
               Cow position:chr5:11427357-11426991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 122

               
               
               Conread position:591-959
               
               
               Cow position:chr5:35208147-35208505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 33

               
               
               Conread position:591-959
               
               
               Cow position:chr5:51053767-51053403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 32

               
               
               Conread position:591-959
               
               
               Cow position:chr5:59631366-59631730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:253
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):32, 52

               
               
               Conread position:591-959
               
               
               Cow position:chr5:61809804-61809443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):30, 57

               
               
               Conread position:591-959
               
               
               Cow position:chr5:64027127-64026760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:257
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):271, 32

               
               
               Conread position:591-959
               
               
               Cow position:chr5:66581844-66582218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 107

               
               
               Conread position:591-960
               
               
               Cow position:chr5:29097240-29097607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 109

               
               
               Conread position:591-960
               
               
               Cow position:chr5:38833004-38833362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:257
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-960
               
               
               Cow position:chr5:48867871-48867501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):221, 95

               
               
               Conread position:592-715
               
               
               Cow position:chr5:30816601-30816722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:97
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:592-752
               
               
               Cow position:chr5:21944277-21944437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):31, 10

               
               
               Conread position:592-766
               
               
               Cow position:chr5:12709767-12709942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):26, 116

               
               
               Conread position:592-788
               
               
               Cow position:chr5:21920253-21920455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):35, 129

               
               
               Conread position:592-819
               
               
               Cow position:chr5:65883894-65883666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):34, 100

               
               
               Conread position:592-847
               
               
               Cow position:chr5:29844161-29844414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):107, 32

               
               
               Conread position:592-854
               
               
               Cow position:chr5:63427124-63426864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):138, 15

               
               
               Conread position:592-855
               
               
               Cow position:chr5:37808794-37808521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):35, 89

               
               
               Conread position:592-857
               
               
               Cow position:chr5:57736992-57737243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:592-874
               
               
               Cow position:chr5:37190213-37189934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):85, 10

               
               
               Conread position:592-875
               
               
               Cow position:chr5:16206273-16205993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:207
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):130, 31

               
               
               Conread position:592-879
               
               
               Cow position:chr5:19523779-19524066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:206
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):34, 106

               
               
               Conread position:592-900
               
               
               Cow position:chr5:63964287-63963982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):33, 80

               
               
               Conread position:592-904
               
               
               Cow position:chr5:71494699-71495011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):28, 76

               
               
               Conread position:592-918
               
               
               Cow position:chr5:57266012-57265699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:220
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):138, 35

               
               
               Conread position:592-927
               
               
               Cow position:chr5:4507075-4506751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):34, 100

               
               
               Conread position:592-941
               
               
               Cow position:chr5:21525050-21525386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):34, 105

               
               
               Conread position:592-941
               
               
               Cow position:chr5:31469703-31469365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):34, 108

               
               
               Conread position:592-941
               
               
               Cow position:chr5:46512881-46512542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 32

               
               
               Conread position:592-941
               
               
               Cow position:chr5:56524057-56524388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:235
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):114, 32

               
               
               Conread position:592-941
               
               
               Cow position:chr5:65941368-65941024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 34

               
               
               Conread position:592-941
               
               
               Cow position:chr5:71722947-71723304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:238
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):27, 106

               
               
               Conread position:592-944
               
               
               Cow position:chr5:62107609-62107255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):134, 36

               
               
               Conread position:592-948
               
               
               Cow position:chr5:61576423-61576780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:244
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):34, 101

               
               
               Conread position:592-948
               
               
               Cow position:chr5:61725855-61726190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):41, 23

               
               
               Conread position:592-949
               
               
               Cow position:chr5:1104985-1104641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):29, 64

               
               
               Conread position:592-949
               
               
               Cow position:chr5:5938206-5938564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):31, 63

               
               
               Conread position:592-949
               
               
               Cow position:chr5:12149424-12149785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:241
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):28, 56

               
               
               Conread position:592-949
               
               
               Cow position:chr5:44049580-44049934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):35, 106

               
               
               Conread position:592-949
               
               
               Cow position:chr5:48154595-48154229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:592-949
               
               
               Cow position:chr5:55942514-55942142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:244
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):117, 31

               
               
               Conread position:592-951
               
               
               Cow position:chr5:50722930-50723284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:246
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):82, 77

               
               
               Conread position:592-959
               
               
               Cow position:chr5:44446986-44446632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 31

               
               
               Conread position:592-959
               
               
               Cow position:chr5:54750718-54751057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):335, 50

               
               
               Conread position:592-960
               
               
               Cow position:chr5:12322919-12322566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:259
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):129, 31

               
               
               Conread position:592-960
               
               
               Cow position:chr5:44673569-44673952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:246
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:593-765
               
               
               Cow position:chr5:27015567-27015730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:593-813
               
               
               Cow position:chr5:61840069-61840288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):34, 121

               
               
               Conread position:593-848
               
               
               Cow position:chr5:62142553-62142811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):77, 59

               
               
               Conread position:593-849
               
               
               Cow position:chr5:28927706-28927457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):129, 30

               
               
               Conread position:593-854
               
               
               Cow position:chr5:6683472-6683226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):54, 29

               
               
               Conread position:593-866
               
               
               Cow position:chr5:53710811-53710536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):33, 106

               
               
               Conread position:593-922
               
               
               Cow position:chr5:64137134-64137465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):33, 115

               
               
               Conread position:593-928
               
               
               Cow position:chr5:66815692-66815378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):26, 106

               
               
               Conread position:593-930
               
               
               Cow position:chr5:12673579-12673265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:232
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):137, 30

               
               
               Conread position:593-936
               
               
               Cow position:chr5:22666976-22667291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:233
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):130, 30

               
               
               Conread position:593-936
               
               
               Cow position:chr5:43923265-43922950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):117, 53

               
               
               Conread position:593-937
               
               
               Cow position:chr5:30487119-30487449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:245
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):88, 132

               
               
               Conread position:593-939
               
               
               Cow position:chr5:64176234-64175906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):130, 30

               
               
               Conread position:593-941
               
               
               Cow position:chr5:14550699-14550356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:593-941
               
               
               Cow position:chr5:33560851-33560512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 77

               
               
               Conread position:593-941
               
               
               Cow position:chr5:38853246-38853577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:231
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):33, 79

               
               
               Conread position:593-944
               
               
               Cow position:chr5:6839192-6838850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:235
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):137, 70

               
               
               Conread position:593-948
               
               
               Cow position:chr5:73168117-73167778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:250
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):33, 14

               
               
               Conread position:593-949
               
               
               Cow position:chr5:28330453-28330107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):33, 103

               
               
               Conread position:593-949
               
               
               Cow position:chr5:30178627-30178268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:242
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):26, 125

               
               
               Conread position:593-951
               
               
               Cow position:chr5:45225942-45225582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 204

               
               
               Conread position:593-956
               
               
               Cow position:chr5:3242593-3242250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):130, 31

               
               
               Conread position:593-959
               
               
               Cow position:chr5:16214570-16214923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:245
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):120, 12

               
               
               Conread position:593-959
               
               
               Cow position:chr5:69337712-69338058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:252
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:594-700
               
               
               Cow position:chr5:45036905-45037010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:90
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:594-751
               
               
               Cow position:chr5:17644772-17644616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):128, 112

               
               
               Conread position:594-804
               
               
               Cow position:chr5:46122466-46122262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:594-861
               
               
               Cow position:chr5:69731395-69731648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):105, 11

               
               
               Conread position:594-930
               
               
               Cow position:chr5:68604742-68605078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):76, 30

               
               
               Conread position:594-935
               
               
               Cow position:chr5:55955793-55956130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 23

               
               
               Conread position:594-941
               
               
               Cow position:chr5:17999611-17999270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 106

               
               
               Conread position:594-947
               
               
               Cow position:chr5:70678747-70678413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:594-948
               
               
               Cow position:chr5:65765244-65764896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):27, 51

               
               
               Conread position:594-959
               
               
               Cow position:chr5:57074450-57074090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 29

               
               
               Conread position:595-704
               
               
               Cow position:chr5:56518325-56518217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:88
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:595-941
               
               
               Cow position:chr5:74643786-74643458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):128, 28

               
               
               Conread position:595-945
               
               
               Cow position:chr5:12901800-12902149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 76

               
               
               Conread position:595-951
               
               
               Cow position:chr5:72903347-72903006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:247
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):31, 104

               
               
               Conread position:596-725
               
               
               Cow position:chr5:60520048-60520176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):116, 27

               
               
               Conread position:596-809
               
               
               Cow position:chr5:40039884-40039670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):126, 28

               
               
               Conread position:596-842
               
               
               Cow position:chr5:15598347-15598109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):127, 27

               
               
               Conread position:596-870
               
               
               Cow position:chr5:38076597-38076325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):27, 50

               
               
               Conread position:596-875
               
               
               Cow position:chr5:21040090-21039820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):23, 90

               
               
               Conread position:596-929
               
               
               Cow position:chr5:57327682-57328011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:234
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):129, 101

               
               
               Conread position:596-932
               
               
               Cow position:chr5:29353242-29352915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:233
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):105, 27

               
               
               Conread position:596-941
               
               
               Cow position:chr5:52165293-52164947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 102

               
               
               Conread position:596-945
               
               
               Cow position:chr5:35763161-35763474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:596-949
               
               
               Cow position:chr5:37255445-37255099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):30, 52

               
               
               Conread position:596-950
               
               
               Cow position:chr5:25495465-25495116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:243
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):61, 27

               
               
               Conread position:596-957
               
               
               Cow position:chr5:49474659-49474311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:255
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):75, 27

               
               
               Conread position:596-959
               
               
               Cow position:chr5:12873623-12873995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:248
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):24, 261

               
               
               Conread position:597-820
               
               
               Cow position:chr5:57561404-57561630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):29, 150

               
               
               Conread position:597-842
               
               
               Cow position:chr5:15426416-15426667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):100, 26

               
               
               Conread position:597-848
               
               
               Cow position:chr5:4710258-4710017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:597-875
               
               
               Cow position:chr5:13717684-13717410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):29, 112

               
               
               Conread position:597-935
               
               
               Cow position:chr5:33414525-33414187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):29, 121

               
               
               Conread position:598-891
               
               
               Cow position:chr5:7697893-7698181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):259, 25

               
               
               Conread position:598-927
               
               
               Cow position:chr5:71846036-71845714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:233
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):21, 122

               
               
               Conread position:598-939
               
               
               Cow position:chr5:39447642-39447301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:242
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):132, 20

               
               
               Conread position:598-951
               
               
               Cow position:chr5:60016055-60016399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:237
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:598-958
               
               
               Cow position:chr5:59082304-59081949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):24, 50

               
               
               Conread position:599-929
               
               
               Cow position:chr5:53946782-53947113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 27

               
               
               Conread position:599-949
               
               
               Cow position:chr5:35319684-35319326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:235
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):25, 13

               
               
               Conread position:600-761
               
               
               Cow position:chr5:60448105-60448264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):135, 106

               
               
               Conread position:600-875
               
               
               Cow position:chr5:23678814-23678541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):26, 170

               
               
               Conread position:600-899
               
               
               Cow position:chr5:60183691-60183984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):52, 23

               
               
               Conread position:601-866
               
               
               Cow position:chr5:35125945-35126208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):111, 9

               
               
               Conread position:601-939
               
               
               Cow position:chr5:14921039-14920702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):118, 22

               
               
               Conread position:601-955
               
               
               Cow position:chr5:63647584-63647235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:240
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):129, 105

               
               
               Conread position:602-922
               
               
               Cow position:chr5:64697676-64697995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):21, 8

               
               
               Conread position:603-831
               
               
               Cow position:chr5:56635793-56636013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):164, 67

               
               
               Conread position:603-949
               
               
               Cow position:chr5:43371305-43370959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:234
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):23, 105

               
               
               Conread position:604-855
               
               
               Cow position:chr5:41293974-41294223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):227, 102

               
               
               Conread position:604-923
               
               
               Cow position:chr5:64168346-64168029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:224
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):22, 96

               
               
               Conread position:604-945
               
               
               Cow position:chr5:31475575-31475914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:232
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):16, 95

               
               
               Conread position:605-957
               
               
               Cow position:chr5:59384798-59384444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:242
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):14, 142

               
               
               Conread position:606-955
               
               
               Cow position:chr5:36039108-36038764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 17

               
               
               Conread position:607-855
               
               
               Cow position:chr5:54375610-54375360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):127, 16

               
               
               Conread position:607-897
               
               
               Cow position:chr5:22188558-22188854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):13, 115

               
               
               Conread position:607-930
               
               
               Cow position:chr5:59395555-59395879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:222
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):123, 10

               
               
               Conread position:607-938
               
               
               Cow position:chr5:35229232-35228921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:229
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):67, 17

               
               
               Conread position:607-941
               
               
               Cow position:chr5:12557395-12557061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):96, 16

               
               
               Conread position:607-956
               
               
               Cow position:chr5:38165161-38164805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:236
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):63, 80

               
               
               Conread position:608-931
               
               
               Cow position:chr5:64523969-64523648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):66, 15

               
               
               Conread position:608-950
               
               
               Cow position:chr5:5751723-5751370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):18, 37

               
               
               Conread position:609-960
               
               
               Cow position:chr5:36650448-36650800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:236
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):114, 93

               
               
               Conread position:610-888
               
               
               Cow position:chr5:62378691-62378956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):263, 13

               
               
               Conread position:611-948
               
               
               Cow position:chr5:64555431-64555764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):13, 34

               
               
               Conread position:612-875
               
               
               Cow position:chr5:55019195-55019453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):16, 59

               
               
               Conread position:612-946
               
               
               Cow position:chr5:56548480-56548797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):53, 11

               
               
               Conread position:612-955
               
               
               Cow position:chr5:22242872-22242532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:247
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):96, 11

               
               
               Conread position:613-742
               
               
               Cow position:chr5:29860250-29860380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):89, 11

               
               
               Conread position:613-931
               
               
               Cow position:chr5:17555129-17554819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:215
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):110, 37

               
               
               Conread position:613-951
               
               
               Cow position:chr5:30232802-30233145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:239
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):31, 10

               
               
               Conread position:613-957
               
               
               Cow position:chr5:46681812-46681481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):12, 37

               
               
               Conread position:615-944
               
               
               Cow position:chr5:5855772-5856089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:617-879
               
               
               Cow position:chr5:51935098-51935355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):105, 85

               
               
               Conread position:618-816
               
               
               Cow position:chr5:4617276-4617469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):104, 31

               
               
               Conread position:618-866
               
               
               Cow position:chr5:47323372-47323615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:618-935
               
               
               Cow position:chr5:63234922-63234602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):21, 91

               
               
               Conread position:618-939
               
               
               Cow position:chr5:12761205-12760896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:618-951
               
               
               Cow position:chr5:54086450-54086793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:238
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):122, 83

               
               
               Conread position:618-952
               
               
               Cow position:chr5:15479033-15479366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):82, 21

               
               
               Conread position:618-960
               
               
               Cow position:chr5:50575692-50576013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:619-875
               
               
               Cow position:chr5:1087288-1087044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):103, 36

               
               
               Conread position:619-941
               
               
               Cow position:chr5:71015972-71015659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):131, 51

               
               
               Conread position:620-959
               
               
               Cow position:chr5:33833953-33834285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:234
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):54, 50

               
               
               Conread position:622-903
               
               
               Cow position:chr5:61492009-61492286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):108, 5

               
               
               Conread position:622-954
               
               
               Cow position:chr5:52831379-52831718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):131, 21

               
               
               Conread position:623-950
               
               
               Cow position:chr5:28302835-28302521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):90, 53

               
               
               Conread position:623-959
               
               
               Cow position:chr5:65140199-65140546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):39, 77

               
               
               Conread position:624-949
               
               
               Cow position:chr5:57527005-57526693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:229
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):80, 92

               
               
               Conread position:626-945
               
               
               Cow position:chr5:43402815-43403139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 213

               
               
               Conread position:627-875
               
               
               Cow position:chr5:59873175-59872916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:628-950
               
               
               Cow position:chr5:50713854-50713513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:628-951
               
               
               Cow position:chr5:61914487-61914807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):148, 78

               
               
               Conread position:631-824
               
               
               Cow position:chr5:31640340-31640536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):55, 86

               
               
               Conread position:632-941
               
               
               Cow position:chr5:19752226-19752527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:220
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):61, 46

               
               
               Conread position:633-951
               
               
               Cow position:chr5:57371722-57372040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:206
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):99, 38

               
               
               Conread position:633-960
               
               
               Cow position:chr5:49668400-49668728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):97, 64

               
               
               Conread position:634-939
               
               
               Cow position:chr5:57756108-57755810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:221
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):68, 82

               
               
               Conread position:638-944
               
               
               Cow position:chr5:37090712-37090408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):88, 45

               
               
               Conread position:640-948
               
               
               Cow position:chr5:44921468-44921153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:208
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):122, 69

               
               
               Conread position:641-930
               
               
               Cow position:chr5:61006996-61007279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):40, 25

               
               
               Conread position:643-864
               
               
               Cow position:chr5:67212288-67212511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):64, 193

               
               
               Conread position:647-939
               
               
               Cow position:chr5:61455781-61456071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):75, 122

               
               
               Conread position:649-951
               
               
               Cow position:chr5:20995157-20994851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):30, 21

               
               
               Conread position:650-875
               
               
               Cow position:chr5:45420195-45419975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:650-941
               
               
               Cow position:chr5:11769207-11769498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):16, 20

               
               
               Conread position:650-941
               
               
               Cow position:chr5:59627035-59626746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:207
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):72, 181

               
               
               Conread position:650-941
               
               
               Cow position:chr5:60952595-60952888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):57, 7

               
               
               Conread position:650-945
               
               
               Cow position:chr5:20843461-20843168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):63, 105

               
               
               Conread position:650-949
               
               
               Cow position:chr5:56136982-56136687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):76, 45

               
               
               Conread position:650-951
               
               
               Cow position:chr5:7012909-7012613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:214
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):29, 20

               
               
               Conread position:650-951
               
               
               Cow position:chr5:43604082-43604375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):80, 44

               
               
               Conread position:650-956
               
               
               Cow position:chr5:30247585-30247283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):33, 60

               
               
               Conread position:651-924
               
               
               Cow position:chr5:59330808-59330530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):45, 92

               
               
               Conread position:651-949
               
               
               Cow position:chr5:26133147-26132861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:652-948
               
               
               Cow position:chr5:41935716-41935420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):14, 74

               
               
               Conread position:652-949
               
               
               Cow position:chr5:30406153-30406448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):65, 25

               
               
               Conread position:653-941
               
               
               Cow position:chr5:70270801-70271093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):80, 200

               
               
               Conread position:653-948
               
               
               Cow position:chr5:63240918-63241212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):69, 57

               
               
               Conread position:655-929
               
               
               Cow position:chr5:57994923-57994666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):75, 46

               
               
               Conread position:657-951
               
               
               Cow position:chr5:14345149-14344859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):85, 45

               
               
               Conread position:657-959
               
               
               Cow position:chr5:28814991-28814698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):277, 43

               
               
               Conread position:658-933
               
               
               Cow position:chr5:57156367-57156082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):67, 50

               
               
               Conread position:658-949
               
               
               Cow position:chr5:19796919-19797220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):72, 142

               
               
               Conread position:659-918
               
               
               Cow position:chr5:37894940-37895198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):71, 38

               
               
               Conread position:659-949
               
               
               Cow position:chr5:57393354-57393069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):15, 38

               
               
               Conread position:662-921
               
               
               Cow position:chr5:57279331-57279592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:664-950
               
               
               Cow position:chr5:6444198-6443908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):114, 43

               
               
               Conread position:664-960
               
               
               Cow position:chr5:62811777-62812075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):60, 14

               
               
               Conread position:665-935
               
               
               Cow position:chr5:61784774-61784505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):59, 37

               
               
               Conread position:666-933
               
               
               Cow position:chr5:49501870-49501600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):64, 46

               
               
               Conread position:666-949
               
               
               Cow position:chr5:52001666-52001390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:673-935
               
               
               Cow position:chr5:72006531-72006275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):36, 29

               
               
               Conread position:673-940
               
               
               Cow position:chr5:20288302-20288033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):50, 29

               
               
               Conread position:673-940
               
               
               Cow position:chr5:69099680-69099944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):50, 24

               
               
               Conread position:673-959
               
               
               Cow position:chr5:31052347-31052633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):50, 24

               
               
               Conread position:673-960
               
               
               Cow position:chr5:68537705-68537419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):57, 9

               
               
               Conread position:674-941
               
               
               Cow position:chr5:18513746-18513480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):56, 100

               
               
               Conread position:674-950
               
               
               Cow position:chr5:50101415-50101144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):56, 36

               
               
               Conread position:675-948
               
               
               Cow position:chr5:54875736-54875461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):99, 30

               
               
               Conread position:676-940
               
               
               Cow position:chr5:57101561-57101301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):34, 97

               
               
               Conread position:677-896
               
               
               Cow position:chr5:17602235-17602024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:677-949
               
               
               Cow position:chr5:60210178-60209910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):53, 32

               
               
               Conread position:677-959
               
               
               Cow position:chr5:19860278-19859999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):78, 44

               
               
               Conread position:678-950
               
               
               Cow position:chr5:33273657-33273933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):38, 95

               
               
               Conread position:678-951
               
               
               Cow position:chr5:26549175-26548907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):45, 38

               
               
               Conread position:678-955
               
               
               Cow position:chr5:37983130-37983412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):52, 30

               
               
               Conread position:680-871
               
               
               Cow position:chr5:38739430-38739245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:682-950
               
               
               Cow position:chr5:52108296-52108023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):176, 27

               
               
               Conread position:692-932
               
               
               Cow position:chr5:60741224-60741462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:692-957
               
               
               Cow position:chr5:45187139-45186874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):32, 114

               
               
               Conread position:700-937
               
               
               Cow position:chr5:4267659-4267882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:700-960
               
               
               Cow position:chr5:53935560-53935307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):9, 23

               
               
               Conread position:702-924
               
               
               Cow position:chr5:16939605-16939383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):28, 13

               
               
               Conread position:702-937
               
               
               Cow position:chr5:60523722-60523949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):36, 69

               
               
               Conread position:702-941
               
               
               Cow position:chr5:61414334-61414574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:702-947
               
               
               Cow position:chr5:46541067-46540828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):21, 70

               
               
               Conread position:702-959
               
               
               Cow position:chr5:12299899-12300156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):29, 143

               
               
               Conread position:703-958
               
               
               Cow position:chr5:56613572-56613319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):142, 10

               
               
               Conread position:705-941
               
               
               Cow position:chr5:33918715-33918477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):12, 120

               
               
               Conread position:707-957
               
               
               Cow position:chr5:30561924-30562168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):9, 161

               
               
               Conread position:708-924
               
               
               Cow position:chr5:35513209-35513430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:709-930
               
               
               Cow position:chr5:48867469-48867255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):21, 140

               
               
               Conread position:709-936
               
               
               Cow position:chr5:72045679-72045456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):18, 56

               
               
               Conread position:709-941
               
               
               Cow position:chr5:55965899-55965666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):17, 75

               
               
               Conread position:709-944
               
               
               Cow position:chr5:56060075-56059835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):15, 66

               
               
               Conread position:709-951
               
               
               Cow position:chr5:60515033-60514789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:180
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):21, 93

               
               
               Conread position:710-937
               
               
               Cow position:chr5:69383251-69383473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):12, 132

               
               
               Conread position:710-941
               
               
               Cow position:chr5:23208953-23209185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):20, 144

               
               
               Conread position:710-947
               
               
               Cow position:chr5:65760533-65760301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):229, 28

               
               
               Conread position:710-948
               
               
               Cow position:chr5:17835161-17834925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):20, 5

               
               
               Conread position:710-948
               
               
               Cow position:chr5:61049328-61049567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:710-949
               
               
               Cow position:chr5:58737763-58737522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:710-951
               
               
               Cow position:chr5:57062532-57062292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):20, 5

               
               
               Conread position:710-959
               
               
               Cow position:chr5:2827372-2827621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):58, 12

               
               
               Conread position:710-959
               
               
               Cow position:chr5:52852966-52853209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):6, 149

               
               
               Conread position:711-937
               
               
               Cow position:chr5:51065527-51065737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):12, 47

               
               
               Conread position:711-949
               
               
               Cow position:chr5:5760315-5760075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):131, 98

               
               
               Conread position:711-959
               
               
               Cow position:chr5:73253408-73253649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):19, 59

               
               
               Conread position:713-952
               
               
               Cow position:chr5:52137934-52138175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):11, 177

               
               
               Conread position:714-937
               
               
               Cow position:chr5:39035780-39036004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):9, 109

               
               
               Conread position:714-941
               
               
               Cow position:chr5:15364269-15364497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):16, 61

               
               
               Conread position:714-949
               
               
               Cow position:chr5:6126839-6127065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):29, 46

               
               
               Conread position:714-950
               
               
               Cow position:chr5:34915053-34914819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):9, 149

               
               
               Conread position:715-945
               
               
               Cow position:chr5:44810238-44810007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:715-948
               
               
               Cow position:chr5:5016431-5016656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):206, 57

               
               
               Conread position:716-944
               
               
               Cow position:chr5:67672225-67672460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:717-929
               
               
               Cow position:chr5:51920291-51920504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):13, 124

               
               
               Conread position:717-950
               
               
               Cow position:chr5:17104856-17105080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):13, 53

               
               
               Conread position:719-939
               
               
               Cow position:chr5:66659515-66659738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:721-941
               
               
               Cow position:chr5:51298704-51298489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:722-941
               
               
               Cow position:chr5:7177160-7177378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):120, 125

               
               
               Conread position:723-958
               
               
               Cow position:chr5:64060456-64060689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):147, 0

               
               
               Conread position:724-941
               
               
               Cow position:chr5:36142998-36143204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:724-941
               
               
               Cow position:chr5:60948144-60948358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:724-950
               
               
               Cow position:chr5:22565630-22565854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):100, 112

               
               
               Conread position:724-959
               
               
               Cow position:chr5:17828468-17828230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):219, 0

               
               
               Conread position:725-949
               
               
               Cow position:chr5:28681505-28681282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):125, 100

               
               
               Conread position:725-949
               
               
               Cow position:chr5:52137042-52136818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:725-949
               
               
               Cow position:chr5:60212596-60212822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:726-941
               
               
               Cow position:chr5:2240976-2240763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:729-949
               
               
               Cow position:chr5:6544120-6543898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):214, 0

               
               
               Conread position:729-951
               
               
               Cow position:chr5:44196913-44196694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:729-952
               
               
               Cow position:chr5:26147607-26147828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):210, 115

               
               
               Conread position:731-950
               
               
               Cow position:chr5:54312619-54312834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):170, 138

               
               
               Conread position:736-918
               
               
               Cow position:chr5:32935768-32935948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:738-955
               
               
               Cow position:chr5:13270992-13270774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):105, 30

               
               
               Conread position:739-960
               
               
               Cow position:chr5:19079278-19079490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):204, 77

               
               
               Conread position:740-941
               
               
               Cow position:chr5:3817662-3817461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):12, 111

               
               
               Conread position:740-941
               
               
               Cow position:chr5:34288223-34288028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:740-959
               
               
               Cow position:chr5:49821455-49821675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:741-927
               
               
               Cow position:chr5:30035095-30035281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:741-944
               
               
               Cow position:chr5:47220516-47220721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:742-937
               
               
               Cow position:chr5:29256678-29256486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:742-959
               
               
               Cow position:chr5:742758-742973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):32, 109

               
               
               Conread position:743-949
               
               
               Cow position:chr5:26894689-26894477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:745-945
               
               
               Cow position:chr5:35190142-35190336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:747-932
               
               
               Cow position:chr5:62572566-62572748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:747-937
               
               
               Cow position:chr5:44722478-44722291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:748-959
               
               
               Cow position:chr5:40122575-40122366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):195, 0

               
               
               Conread position:748-959
               
               
               Cow position:chr5:71445425-71445638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):195, 0

               
               
               Conread position:750-945
               
               
               Cow position:chr5:74887863-74887669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:757-932
               
               
               Cow position:chr5:6695591-6695766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):97, 64

               
               
               Conread position:757-938
               
               
               Cow position:chr5:43839955-43839774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:757-951
               
               
               Cow position:chr5:16185422-16185617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):143, 153

               
               
               Conread position:763-937
               
               
               Cow position:chr5:4824198-4824375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):44, 100

               
               
               Conread position:769-959
               
               
               Cow position:chr5:15770399-15770207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):91, 16

               
               
               Conread position:771-941
               
               
               Cow position:chr5:34787632-34787798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:772-936
               
               
               Cow position:chr5:73424622-73424456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:772-941
               
               
               Cow position:chr5:17987835-17987667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:773-927
               
               
               Cow position:chr5:20812606-20812761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):81, 34

               
               
               Conread position:773-927
               
               
               Cow position:chr5:69682289-69682135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:773-928
               
               
               Cow position:chr5:51233959-51233811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:773-929
               
               
               Cow position:chr5:53980694-53980538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:773-938
               
               
               Cow position:chr5:63763725-63763888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:773-941
               
               
               Cow position:chr5:57687523-57687354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:773-941
               
               
               Cow position:chr5:59662998-59662831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:773-949
               
               
               Cow position:chr5:19052732-19052557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:773-949
               
               
               Cow position:chr5:24464807-24464972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:773-949
               
               
               Cow position:chr5:53779215-53779386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:773-949
               
               
               Cow position:chr5:55162686-55162862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:773-950
               
               
               Cow position:chr5:24915467-24915290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:773-958
               
               
               Cow position:chr5:62011743-62011925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:773-959
               
               
               Cow position:chr5:70346361-70346551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):23, 14

               
               
               Conread position:774-927
               
               
               Cow position:chr5:38040503-38040356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:774-940
               
               
               Cow position:chr5:37842218-37842054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):97, 72

               
               
               Conread position:774-941
               
               
               Cow position:chr5:29895232-29895397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:774-941
               
               
               Cow position:chr5:34918407-34918569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:774-941
               
               
               Cow position:chr5:49207266-49207103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:774-941
               
               
               Cow position:chr5:55943655-55943492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:774-945
               
               
               Cow position:chr5:21721409-21721246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:774-947
               
               
               Cow position:chr5:20345598-20345771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):82, 38

               
               
               Conread position:774-949
               
               
               Cow position:chr5:1678649-1678824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:774-949
               
               
               Cow position:chr5:58401630-58401799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:774-950
               
               
               Cow position:chr5:43846324-43846143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):19, 128

               
               
               Conread position:774-951
               
               
               Cow position:chr5:8736218-8736041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):59, 16

               
               
               Conread position:774-951
               
               
               Cow position:chr5:29599485-29599316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:774-951
               
               
               Cow position:chr5:37253490-37253658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:774-951
               
               
               Cow position:chr5:64843910-64843728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:774-955
               
               
               Cow position:chr5:1694027-1693853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:774-958
               
               
               Cow position:chr5:60207769-60207950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):166, 72

               
               
               Conread position:774-959
               
               
               Cow position:chr5:63300139-63300320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:775-941
               
               
               Cow position:chr5:34347672-34347507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:775-941
               
               
               Cow position:chr5:56881405-56881571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:775-941
               
               
               Cow position:chr5:57087001-57086836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:775-945
               
               
               Cow position:chr5:19561386-19561216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:775-949
               
               
               Cow position:chr5:31527333-31527159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):78, 137

               
               
               Conread position:775-950
               
               
               Cow position:chr5:5030505-5030675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):92, 18

               
               
               Conread position:775-950
               
               
               Cow position:chr5:57497362-57497191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:775-951
               
               
               Cow position:chr5:718212-718385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:775-951
               
               
               Cow position:chr5:22102620-22102789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:775-951
               
               
               Cow position:chr5:43611760-43611935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:775-958
               
               
               Cow position:chr5:2355582-2355760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):28, 57

               
               
               Conread position:775-959
               
               
               Cow position:chr5:57447604-57447418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):167, 0

               
               
               Conread position:775-959
               
               
               Cow position:chr5:61580343-61580523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):58, 74

               
               
               Conread position:775-960
               
               
               Cow position:chr5:51289532-51289356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:776-941
               
               
               Cow position:chr5:26149097-26149261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:776-941
               
               
               Cow position:chr5:63939998-63939832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):78, 14

               
               
               Conread position:776-949
               
               
               Cow position:chr5:1005805-1005632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:776-951
               
               
               Cow position:chr5:18062256-18062075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):49, 42

               
               
               Conread position:777-935
               
               
               Cow position:chr5:54753186-54753028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):154, 6

               
               
               Conread position:777-945
               
               
               Cow position:chr5:25597896-25598055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:779-930
               
               
               Cow position:chr5:62341094-62341245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):45, 128

               
               
               Conread position:779-945
               
               
               Cow position:chr5:9487019-9486853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:779-948
               
               
               Cow position:chr5:36370345-36370506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:780-945
               
               
               Cow position:chr5:55949612-55949448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:780-945
               
               
               Cow position:chr5:63172977-63172818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:780-949
               
               
               Cow position:chr5:51012066-51012234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):41, 55

               
               
               Conread position:780-952
               
               
               Cow position:chr5:74065450-74065283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:780-959
               
               
               Cow position:chr5:57399186-57399005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):164, 0

               
               
               Conread position:780-959
               
               
               Cow position:chr5:74039936-74039758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):158, 50

               
               
               Conread position:780-960
               
               
               Cow position:chr5:30492727-30492547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):72, 174

               
               
               Conread position:781-939
               
               
               Cow position:chr5:31648487-31648639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:781-944
               
               
               Cow position:chr5:46710649-46710812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:781-944
               
               
               Cow position:chr5:46715549-46715712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:781-950
               
               
               Cow position:chr5:62996025-62996194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:781-959
               
               
               Cow position:chr5:55783895-55783716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):158, 0

               
               
               Conread position:782-941
               
               
               Cow position:chr5:24108991-24108832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:782-941
               
               
               Cow position:chr5:54712996-54712842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:782-945
               
               
               Cow position:chr5:14454110-14454274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:782-949
               
               
               Cow position:chr5:56643136-56643304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):103, 79

               
               
               Conread position:782-951
               
               
               Cow position:chr5:30221709-30221541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:782-951
               
               
               Cow position:chr5:54340835-54341002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:782-954
               
               
               Cow position:chr5:41530871-41530697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:782-957
               
               
               Cow position:chr5:56284372-56284549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:782-957
               
               
               Cow position:chr5:56525643-56525468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:782-959
               
               
               Cow position:chr5:38683572-38683748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):153, 0

               
               
               Conread position:783-935
               
               
               Cow position:chr5:20126979-20127127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:783-945
               
               
               Cow position:chr5:59335840-59336003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):29, 25

               
               
               Conread position:783-960
               
               
               Cow position:chr5:32975828-32976008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):86, 129

               
               
               Conread position:787-941
               
               
               Cow position:chr5:12562681-12562534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:787-944
               
               
               Cow position:chr5:58487449-58487602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:787-960
               
               
               Cow position:chr5:19626652-19626821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:788-949
               
               
               Cow position:chr5:56624442-56624280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:788-959
               
               
               Cow position:chr5:43815742-43815571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):160, 64

               
               
               Conread position:789-941
               
               
               Cow position:chr5:34639198-34639350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:789-948
               
               
               Cow position:chr5:18578969-18579121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):47, 7

               
               
               Conread position:789-959
               
               
               Cow position:chr5:1178030-1178197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):157, 72

               
               
               Conread position:790-941
               
               
               Cow position:chr5:45854574-45854727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:790-941
               
               
               Cow position:chr5:55749960-55749810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:111
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:801-951
               
               
               Cow position:chr5:74049912-74050060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:804-941
               
               
               Cow position:chr5:41639505-41639368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:103
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:804-959
               
               
               Cow position:chr5:25446976-25447129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):56, 33

               
               
               Conread position:812-950
               
               
               Cow position:chr5:50703950-50703813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:816-945
               
               
               Cow position:chr5:52032206-52032078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:818-945
               
               
               Cow position:chr5:74690149-74690022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:818-950
               
               
               Cow position:chr5:15413201-15413334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:100
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:836-958
               
               
               Cow position:chr5:8149184-8149066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:97
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:520-930
               
               
               Cow position:chr6:19755244-19754850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:272
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):41, 17

               
               
               Conread position:529-941
               
               
               Cow position:chr6:32287473-32287870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:282
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):43, 59

               
               
               Conread position:539-956
               
               
               Cow position:chr6:7119769-7119375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:283
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):22, 86

               
               
               Conread position:547-955
               
               
               Cow position:chr6:15300968-15300587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:286
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):45, 7

               
               
               Conread position:549-941
               
               
               Cow position:chr6:60819364-60819754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 150

               
               
               Conread position:549-958
               
               
               Cow position:chr6:27240150-27239751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:266
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):315, 37

               
               
               Conread position:557-739
               
               
               Cow position:chr6:54287932-54288112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):22, 13

               
               
               Conread position:562-855
               
               
               Cow position:chr6:28977170-28976884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):13, 7

               
               
               Conread position:562-942
               
               
               Cow position:chr6:38771153-38771511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:259
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):13, 7

               
               
               Conread position:565-752
               
               
               Cow position:chr6:49604548-49604729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):11, 24

               
               
               Conread position:565-950
               
               
               Cow position:chr6:5095684-5095294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 20

               
               
               Conread position:566-733
               
               
               Cow position:chr6:53710983-53711149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):25, 55

               
               
               Conread position:566-819
               
               
               Cow position:chr6:28318276-28318517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:566-867
               
               
               Cow position:chr6:582400-582105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:216
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):156, 18

               
               
               Conread position:566-867
               
               
               Cow position:chr6:16316173-16316484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:566-888
               
               
               Cow position:chr6:48112071-48112382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):157, 22

               
               
               Conread position:566-897
               
               
               Cow position:chr6:16423566-16423904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:230
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):27, 61

               
               
               Conread position:566-924
               
               
               Cow position:chr6:60739882-60740232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 143

               
               
               Conread position:566-929
               
               
               Cow position:chr6:41733494-41733862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:250
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):26, 120

               
               
               Conread position:566-941
               
               
               Cow position:chr6:23695864-23696233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 57

               
               
               Conread position:566-944
               
               
               Cow position:chr6:34251420-34251056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:258
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):17, 23

               
               
               Conread position:566-950
               
               
               Cow position:chr6:6264512-6264898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:262
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):16, 59

               
               
               Conread position:566-954
               
               
               Cow position:chr6:54365461-54365073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 139

               
               
               Conread position:566-957
               
               
               Cow position:chr6:9736773-9736388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:278
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):175, 31

               
               
               Conread position:566-960
               
               
               Cow position:chr6:3952389-3952780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):376, 60

               
               
               Conread position:566-960
               
               
               Cow position:chr6:33302279-33302656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:270
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):53, 19

               
               
               Conread position:567-937
               
               
               Cow position:chr6:36196085-36196437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:245
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):27, 5

               
               
               Conread position:569-752
               
               
               Cow position:chr6:21052636-21052454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):50, 138

               
               
               Conread position:569-842
               
               
               Cow position:chr6:4864675-4864404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):171, 55

               
               
               Conread position:569-941
               
               
               Cow position:chr6:32125937-32126291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:256
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):41, 24

               
               
               Conread position:569-951
               
               
               Cow position:chr6:50984094-50984473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 105

               
               
               Conread position:573-949
               
               
               Cow position:chr6:12964727-12965101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:260
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):53, 15

               
               
               Conread position:574-745
               
               
               Cow position:chr6:46400534-46400367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):149, 130

               
               
               Conread position:574-796
               
               
               Cow position:chr6:62925122-62924899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):19, 53

               
               
               Conread position:574-808
               
               
               Cow position:chr6:377008-377234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):189, 22

               
               
               Conread position:574-857
               
               
               Cow position:chr6:52901115-52901396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):125, 19

               
               
               Conread position:574-861
               
               
               Cow position:chr6:21110841-21111113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):19, 28

               
               
               Conread position:574-875
               
               
               Cow position:chr6:16764771-16764470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):140, 19

               
               
               Conread position:574-921
               
               
               Cow position:chr6:35990352-35990020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:235
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):194, 27

               
               
               Conread position:574-938
               
               
               Cow position:chr6:3595665-3596030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:249
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):19, 114

               
               
               Conread position:574-940
               
               
               Cow position:chr6:6965510-6965157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:246
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):18, 30

               
               
               Conread position:574-941
               
               
               Cow position:chr6:9751169-9750807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:248
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):19, 55

               
               
               Conread position:574-941
               
               
               Cow position:chr6:66363373-66362993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:242
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:574-941
               
               
               Cow position:chr6:66433819-66434193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:256
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):19, 84

               
               
               Conread position:574-951
               
               
               Cow position:chr6:46465699-46466066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:260
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):19, 51

               
               
               Conread position:574-955
               
               
               Cow position:chr6:59104479-59104858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:264
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):17, 31

               
               
               Conread position:576-941
               
               
               Cow position:chr6:43590402-43590037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):154, 15

               
               
               Conread position:576-943
               
               
               Cow position:chr6:60850503-60850138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:253
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):182, 15

               
               
               Conread position:576-951
               
               
               Cow position:chr6:323422-323053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):11, 19

               
               
               Conread position:576-951
               
               
               Cow position:chr6:53841616-53841255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 11

               
               
               Conread position:576-958
               
               
               Cow position:chr6:2547127-2547521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:271
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):124, 9

               
               
               Conread position:577-751
               
               
               Cow position:chr6:38233836-38234011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):18, 50

               
               
               Conread position:577-848
               
               
               Cow position:chr6:11169585-11169851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):15, 48

               
               
               Conread position:577-848
               
               
               Cow position:chr6:45065134-45064868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):15, 50

               
               
               Conread position:577-875
               
               
               Cow position:chr6:6343306-6343605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):15, 111

               
               
               Conread position:577-876
               
               
               Cow position:chr6:25407512-25407215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):15, 118

               
               
               Conread position:577-935
               
               
               Cow position:chr6:21062012-21061658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):15, 185

               
               
               Conread position:577-937
               
               
               Cow position:chr6:66131183-66131554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:245
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):15, 129

               
               
               Conread position:577-941
               
               
               Cow position:chr6:21534935-21535279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:250
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):15, 70

               
               
               Conread position:577-948
               
               
               Cow position:chr6:14914363-14913988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 10

               
               
               Conread position:577-949
               
               
               Cow position:chr6:35181377-35181007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 69

               
               
               Conread position:577-951
               
               
               Cow position:chr6:53519743-53519378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:245
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):15, 25

               
               
               Conread position:577-957
               
               
               Cow position:chr6:67574287-67574645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:256
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):29, 49

               
               
               Conread position:577-959
               
               
               Cow position:chr6:9008731-9008365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:254
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):15, 48

               
               
               Conread position:578-736
               
               
               Cow position:chr6:20230949-20230789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):47, 139

               
               
               Conread position:578-743
               
               
               Cow position:chr6:16411072-16411235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):145, 128

               
               
               Conread position:578-816
               
               
               Cow position:chr6:49002852-49002623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:578-848
               
               
               Cow position:chr6:8788156-8787888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:186
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):144, 109

               
               
               Conread position:578-902
               
               
               Cow position:chr6:21590574-21590904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):103, 14

               
               
               Conread position:578-936
               
               
               Cow position:chr6:5302527-5302168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):98, 42

               
               
               Conread position:578-937
               
               
               Cow position:chr6:37149070-37149417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:579-799
               
               
               Cow position:chr6:48169832-48170038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:579-820
               
               
               Cow position:chr6:54600231-54600469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):130, 18

               
               
               Conread position:579-848
               
               
               Cow position:chr6:36470683-36470413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):47, 9

               
               
               Conread position:579-906
               
               
               Cow position:chr6:19012949-19013270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):45, 17

               
               
               Conread position:579-927
               
               
               Cow position:chr6:51835282-51835623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 10

               
               
               Conread position:579-937
               
               
               Cow position:chr6:19264614-19264266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 45

               
               
               Conread position:580-937
               
               
               Cow position:chr6:35435881-35436222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):133, 21

               
               
               Conread position:580-944
               
               
               Cow position:chr6:59798541-59798891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:256
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):144, 86

               
               
               Conread position:580-959
               
               
               Cow position:chr6:17704704-17705091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:259
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):46, 5

               
               
               Conread position:580-960
               
               
               Cow position:chr6:6060680-6060314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):30, 18

               
               
               Conread position:581-760
               
               
               Cow position:chr6:40834585-40834407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):11, 47

               
               
               Conread position:581-812
               
               
               Cow position:chr6:57164310-57164542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):11, 126

               
               
               Conread position:581-820
               
               
               Cow position:chr6:66874235-66874472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):11, 28

               
               
               Conread position:581-823
               
               
               Cow position:chr6:899406-899169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:581-842
               
               
               Cow position:chr6:29000038-28999797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):198, 7

               
               
               Conread position:581-937
               
               
               Cow position:chr6:13367177-13367517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:581-937
               
               
               Cow position:chr6:32268992-32268652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):11, 44

               
               
               Conread position:581-945
               
               
               Cow position:chr6:5609556-5609199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 43

               
               
               Conread position:581-947
               
               
               Cow position:chr6:11246647-11247015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 44

               
               
               Conread position:581-951
               
               
               Cow position:chr6:15447320-15446943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 47

               
               
               Conread position:581-954
               
               
               Cow position:chr6:47355708-47356078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:257
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):11, 47

               
               
               Conread position:581-955
               
               
               Cow position:chr6:611446-611795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:244
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):11, 39

               
               
               Conread position:584-761
               
               
               Cow position:chr6:607154-607323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):138, 62

               
               
               Conread position:584-842
               
               
               Cow position:chr6:14958457-14958197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):118, 39

               
               
               Conread position:584-937
               
               
               Cow position:chr6:31535679-31535338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 39

               
               
               Conread position:585-736
               
               
               Cow position:chr6:47540420-47540569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):137, 64

               
               
               Conread position:585-752
               
               
               Cow position:chr6:53731410-53731577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):130, 119

               
               
               Conread position:585-848
               
               
               Cow position:chr6:31564450-31564189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):5, 42

               
               
               Conread position:585-855
               
               
               Cow position:chr6:42961474-42961207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):36, 80

               
               
               Conread position:585-875
               
               
               Cow position:chr6:58597615-58597328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):112, 38

               
               
               Conread position:585-929
               
               
               Cow position:chr6:58732420-58732073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):34, 167

               
               
               Conread position:585-937
               
               
               Cow position:chr6:17997426-17997082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 85

               
               
               Conread position:585-937
               
               
               Cow position:chr6:65903728-65903391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):298, 58

               
               
               Conread position:585-941
               
               
               Cow position:chr6:120132-120476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:249
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):73, 40

               
               
               Conread position:585-941
               
               
               Cow position:chr6:53024905-53024572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:238
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):138, 6

               
               
               Conread position:585-945
               
               
               Cow position:chr6:46865704-46865342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):36, 115

               
               
               Conread position:585-948
               
               
               Cow position:chr6:60474024-60474381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:238
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):41, 60

               
               
               Conread position:585-949
               
               
               Cow position:chr6:62929385-62929745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):35, 60

               
               
               Conread position:585-957
               
               
               Cow position:chr6:32867317-32866966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:257
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):183, 33

               
               
               Conread position:585-958
               
               
               Cow position:chr6:23402100-23401737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:255
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):353, 41

               
               
               Conread position:586-860
               
               
               Cow position:chr6:35103443-35103167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:192
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):8, 26

               
               
               Conread position:586-944
               
               
               Cow position:chr6:52431136-52430777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):172, 9

               
               
               Conread position:591-704
               
               
               Cow position:chr6:33276936-33277050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-706
               
               
               Cow position:chr6:19351259-19351145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:93
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:591-735
               
               
               Cow position:chr6:415993-416142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:591-736
               
               
               Cow position:chr6:48344227-48344370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:591-742
               
               
               Cow position:chr6:61137270-61137418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):133, 35

               
               
               Conread position:591-743
               
               
               Cow position:chr6:24515298-24515154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):135, 33

               
               
               Conread position:591-748
               
               
               Cow position:chr6:49685480-49685634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):131, 20

               
               
               Conread position:591-749
               
               
               Cow position:chr6:3978770-3978612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):29, 108

               
               
               Conread position:591-750
               
               
               Cow position:chr6:44984224-44984381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):131, 107

               
               
               Conread position:591-752
               
               
               Cow position:chr6:16737915-16738072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:591-753
               
               
               Cow position:chr6:633462-633303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:591-753
               
               
               Cow position:chr6:45160399-45160244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:591-753
               
               
               Cow position:chr6:54885018-54884851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):30, 154

               
               
               Conread position:591-753
               
               
               Cow position:chr6:62479270-62479106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):54, 102

               
               
               Conread position:591-755
               
               
               Cow position:chr6:52025759-52025594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):30, 108

               
               
               Conread position:591-761
               
               
               Cow position:chr6:29266097-29266266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):35, 105

               
               
               Conread position:591-766
               
               
               Cow position:chr6:5445520-5445690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):108, 55

               
               
               Conread position:591-767
               
               
               Cow position:chr6:21542215-21542391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-791
               
               
               Cow position:chr6:8804635-8804439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):131, 33

               
               
               Conread position:591-812
               
               
               Cow position:chr6:12543038-12542817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):135, 32

               
               
               Conread position:591-816
               
               
               Cow position:chr6:31635794-31635567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):122, 35

               
               
               Conread position:591-816
               
               
               Cow position:chr6:61608406-61608629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):131, 33

               
               
               Conread position:591-824
               
               
               Cow position:chr6:23248064-23247841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):106, 32

               
               
               Conread position:591-836
               
               
               Cow position:chr6:51893606-51893363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):66, 83

               
               
               Conread position:591-838
               
               
               Cow position:chr6:63272715-63272473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):31, 64

               
               
               Conread position:591-840
               
               
               Cow position:chr6:12551165-12551411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-840
               
               
               Cow position:chr6:47640538-47640290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):242, 32

               
               
               Conread position:591-842
               
               
               Cow position:chr6:20098069-20097816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):106, 32

               
               
               Conread position:591-842
               
               
               Cow position:chr6:31525942-31526189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):147, 15

               
               
               Conread position:591-842
               
               
               Cow position:chr6:60350400-60350149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):83, 32

               
               
               Conread position:591-854
               
               
               Cow position:chr6:60442313-60442562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):30, 11

               
               
               Conread position:591-855
               
               
               Cow position:chr6:9452874-9452614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):121, 33

               
               
               Conread position:591-855
               
               
               Cow position:chr6:42565584-42565843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):108, 7

               
               
               Conread position:591-855
               
               
               Cow position:chr6:54991105-54990845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):135, 15

               
               
               Conread position:591-857
               
               
               Cow position:chr6:19681628-19681367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):30, 24

               
               
               Conread position:591-859
               
               
               Cow position:chr6:17090494-17090759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):108, 33

               
               
               Conread position:591-867
               
               
               Cow position:chr6:35471624-35471342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):108, 33

               
               
               Conread position:591-869
               
               
               Cow position:chr6:38218567-38218837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):227, 21

               
               
               Conread position:591-873
               
               
               Cow position:chr6:54867408-54867691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 124

               
               
               Conread position:591-874
               
               
               Cow position:chr6:37199640-37199365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):34, 167

               
               
               Conread position:591-874
               
               
               Cow position:chr6:66531926-66531647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:195
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):133, 33

               
               
               Conread position:591-876
               
               
               Cow position:chr6:54864776-54864483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):110, 191

               
               
               Conread position:591-876
               
               
               Cow position:chr6:67214639-67214925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):108, 97

               
               
               Conread position:591-894
               
               
               Cow position:chr6:40713606-40713317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:591-899
               
               
               Cow position:chr6:57571372-57571675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):57, 32

               
               
               Conread position:591-903
               
               
               Cow position:chr6:8637170-8637478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):108, 32

               
               
               Conread position:591-903
               
               
               Cow position:chr6:21514724-21514405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 114

               
               
               Conread position:591-915
               
               
               Cow position:chr6:26915224-26915541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:228
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):10, 33

               
               
               Conread position:591-919
               
               
               Cow position:chr6:445210-445545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 123

               
               
               Conread position:591-921
               
               
               Cow position:chr6:35842545-35842879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 149

               
               
               Conread position:591-921
               
               
               Cow position:chr6:52412753-52413081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:226
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):28, 108

               
               
               Conread position:591-923
               
               
               Cow position:chr6:28482914-28483238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):131, 99

               
               
               Conread position:591-928
               
               
               Cow position:chr6:5114150-5113821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:238
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):133, 37

               
               
               Conread position:591-930
               
               
               Cow position:chr6:38207596-38207258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 32

               
               
               Conread position:591-933
               
               
               Cow position:chr6:15305476-15305802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:237
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-935
               
               
               Cow position:chr6:12337879-12338223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):28, 224

               
               
               Conread position:591-935
               
               
               Cow position:chr6:39358448-39358110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:238
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):57, 32

               
               
               Conread position:591-935
               
               
               Cow position:chr6:47833221-47832881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):32, 70

               
               
               Conread position:591-936
               
               
               Cow position:chr6:29484985-29485317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):193, 33

               
               
               Conread position:591-936
               
               
               Cow position:chr6:34196255-34195928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):131, 33

               
               
               Conread position:591-936
               
               
               Cow position:chr6:49398719-49398395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-937
               
               
               Cow position:chr6:24781664-24781316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:249
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):35, 119

               
               
               Conread position:591-937
               
               
               Cow position:chr6:36202723-36203056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-937
               
               
               Cow position:chr6:38853759-38853421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 32

               
               
               Conread position:591-937
               
               
               Cow position:chr6:48803742-48803405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:233
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):9, 34

               
               
               Conread position:591-937
               
               
               Cow position:chr6:57405234-57404901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):31, 116

               
               
               Conread position:591-937
               
               
               Cow position:chr6:59718691-59719046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 32

               
               
               Conread position:591-937
               
               
               Cow position:chr6:61515301-61514963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:247
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):15, 117

               
               
               Conread position:591-938
               
               
               Cow position:chr6:19996513-19996851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 70

               
               
               Conread position:591-939
               
               
               Cow position:chr6:23532561-23532883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:237
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):139, 20

               
               
               Conread position:591-939
               
               
               Cow position:chr6:67950848-67951194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 32

               
               
               Conread position:591-940
               
               
               Cow position:chr6:10106097-10105745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:251
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):18, 33

               
               
               Conread position:591-941
               
               
               Cow position:chr6:1770300-1769955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):131, 52

               
               
               Conread position:591-941
               
               
               Cow position:chr6:2896648-2896980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):35, 77

               
               
               Conread position:591-941
               
               
               Cow position:chr6:6201334-6201672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):35, 56

               
               
               Conread position:591-941
               
               
               Cow position:chr6:8965988-8966327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:236
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):119, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr6:9219168-9219502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):196, 40

               
               
               Conread position:591-941
               
               
               Cow position:chr6:10039616-10039965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 71

               
               
               Conread position:591-941
               
               
               Cow position:chr6:24468498-24468160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr6:26728630-26728305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):61, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr6:46283105-46282753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):106, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr6:57546319-57545990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):139, 26

               
               
               Conread position:591-941
               
               
               Cow position:chr6:65702506-65702170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):8, 68

               
               
               Conread position:591-941
               
               
               Cow position:chr6:65870923-65871270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:240
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):32, 216

               
               
               Conread position:591-942
               
               
               Cow position:chr6:46860269-46859931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):117, 32

               
               
               Conread position:591-944
               
               
               Cow position:chr6:14949584-14949249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):131, 73

               
               
               Conread position:591-944
               
               
               Cow position:chr6:43135049-43134699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:251
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):17, 65

               
               
               Conread position:591-944
               
               
               Cow position:chr6:44566311-44566668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):107, 135

               
               
               Conread position:591-945
               
               
               Cow position:chr6:38609863-38610217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:246
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):38, 33

               
               
               Conread position:591-945
               
               
               Cow position:chr6:47574800-47575134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:247
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):61, 32

               
               
               Conread position:591-947
               
               
               Cow position:chr6:33206642-33206974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:241
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):47, 28

               
               
               Conread position:591-948
               
               
               Cow position:chr6:28148143-28148509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:253
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):31, 22

               
               
               Conread position:591-949
               
               
               Cow position:chr6:1371335-1370983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):35, 107

               
               
               Conread position:591-949
               
               
               Cow position:chr6:16746235-16746593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:243
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):35, 108

               
               
               Conread position:591-949
               
               
               Cow position:chr6:40032088-40032426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 33

               
               
               Conread position:591-949
               
               
               Cow position:chr6:45388225-45388568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):150, 33

               
               
               Conread position:591-949
               
               
               Cow position:chr6:53178533-53178873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:239
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):227, 81

               
               
               Conread position:591-949
               
               
               Cow position:chr6:54430718-54431083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:251
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):35, 105

               
               
               Conread position:591-949
               
               
               Cow position:chr6:55209451-55209807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 104

               
               
               Conread position:591-949
               
               
               Cow position:chr6:59620564-59620903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:244
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):35, 61

               
               
               Conread position:591-950
               
               
               Cow position:chr6:18447613-18447267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 36

               
               
               Conread position:591-950
               
               
               Cow position:chr6:46173363-46173010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):30, 107

               
               
               Conread position:591-950
               
               
               Cow position:chr6:48988332-48988682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:248
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):32, 117

               
               
               Conread position:591-950
               
               
               Cow position:chr6:53932952-53932597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 48

               
               
               Conread position:591-951
               
               
               Cow position:chr6:10225744-10225401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:250
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):242, 37

               
               
               Conread position:591-951
               
               
               Cow position:chr6:15937955-15937602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):348, 5

               
               
               Conread position:591-951
               
               
               Cow position:chr6:17557276-17557624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:241
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):130, 104

               
               
               Conread position:591-951
               
               
               Cow position:chr6:25615207-25614841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:254
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):111, 12

               
               
               Conread position:591-951
               
               
               Cow position:chr6:44194647-44194305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-951
               
               
               Cow position:chr6:54854144-54854499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):139, 58

               
               
               Conread position:591-951
               
               
               Cow position:chr6:62371286-62370938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:255
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):28, 84

               
               
               Conread position:591-951
               
               
               Cow position:chr6:63252028-63251673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 33

               
               
               Conread position:591-955
               
               
               Cow position:chr6:4559410-4559048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):131, 102

               
               
               Conread position:591-955
               
               
               Cow position:chr6:11192571-11192225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:246
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-955
               
               
               Cow position:chr6:50090540-50090899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):139, 88

               
               
               Conread position:591-956
               
               
               Cow position:chr6:7190224-7189875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):176, 15

               
               
               Conread position:591-956
               
               
               Cow position:chr6:53460677-53460318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):106, 32

               
               
               Conread position:591-958
               
               
               Cow position:chr6:21234939-21235303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:248
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):103, 32

               
               
               Conread position:591-958
               
               
               Cow position:chr6:59603312-59602959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:256
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):121, 32

               
               
               Conread position:591-959
               
               
               Cow position:chr6:16266614-16266985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:250
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):35, 106

               
               
               Conread position:591-959
               
               
               Cow position:chr6:17313629-17313996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 33

               
               
               Conread position:591-959
               
               
               Cow position:chr6:47305234-47305595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 78

               
               
               Conread position:591-959
               
               
               Cow position:chr6:50577419-50577770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:247
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-959
               
               
               Cow position:chr6:64431834-64432188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:256
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):140, 21

               
               
               Conread position:591-960
               
               
               Cow position:chr6:10176407-10176042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 119

               
               
               Conread position:591-960
               
               
               Cow position:chr6:18988108-18988448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:256
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):81, 33

               
               
               Conread position:591-960
               
               
               Cow position:chr6:61631714-61631350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 117

               
               
               Conread position:592-714
               
               
               Cow position:chr6:14153224-14153104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):110, 68

               
               
               Conread position:592-784
               
               
               Cow position:chr6:44098980-44099171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):21, 119

               
               
               Conread position:592-813
               
               
               Cow position:chr6:130265-130049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:592-848
               
               
               Cow position:chr6:60667314-60667559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):28, 107

               
               
               Conread position:592-867
               
               
               Cow position:chr6:16191565-16191839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):31, 200

               
               
               Conread position:592-896
               
               
               Cow position:chr6:17334160-17333856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):34, 100

               
               
               Conread position:592-900
               
               
               Cow position:chr6:36652315-36652622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):122, 32

               
               
               Conread position:592-925
               
               
               Cow position:chr6:19695701-19696032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):30, 13

               
               
               Conread position:592-930
               
               
               Cow position:chr6:4383382-4383702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:243
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):282, 31

               
               
               Conread position:592-935
               
               
               Cow position:chr6:54132713-54133045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):111, 31

               
               
               Conread position:592-938
               
               
               Cow position:chr6:61113650-61114001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):34, 170

               
               
               Conread position:592-939
               
               
               Cow position:chr6:29239835-29240169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:243
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):138, 114

               
               
               Conread position:592-941
               
               
               Cow position:chr6:44078414-44078754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:234
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:592-941
               
               
               Cow position:chr6:50467031-50467377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):30, 79

               
               
               Conread position:592-944
               
               
               Cow position:chr6:12668999-12669340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:248
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):28, 70

               
               
               Conread position:592-944
               
               
               Cow position:chr6:20157225-20157577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:241
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):31, 118

               
               
               Conread position:592-944
               
               
               Cow position:chr6:22850349-22850010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:245
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):192, 68

               
               
               Conread position:592-946
               
               
               Cow position:chr6:4692084-4691720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 227

               
               
               Conread position:592-948
               
               
               Cow position:chr6:38640127-38640477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:243
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):128, 31

               
               
               Conread position:592-949
               
               
               Cow position:chr6:21399857-21399507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:247
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):34, 76

               
               
               Conread position:592-949
               
               
               Cow position:chr6:48187686-48187327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):27, 104

               
               
               Conread position:592-949
               
               
               Cow position:chr6:50746880-50747251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):34, 205

               
               
               Conread position:592-949
               
               
               Cow position:chr6:54208243-54207885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:236
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):34, 20

               
               
               Conread position:592-949
               
               
               Cow position:chr6:60859406-60859051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):34, 101

               
               
               Conread position:592-950
               
               
               Cow position:chr6:43345550-43345192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 115

               
               
               Conread position:592-951
               
               
               Cow position:chr6:18080612-18080267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):249, 103

               
               
               Conread position:592-955
               
               
               Cow position:chr6:8125224-8125582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 56

               
               
               Conread position:592-958
               
               
               Cow position:chr6:21587521-21587180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:592-958
               
               
               Cow position:chr6:32121807-32122152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):346, 31

               
               
               Conread position:592-959
               
               
               Cow position:chr6:8562616-8562970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):134, 32

               
               
               Conread position:592-959
               
               
               Cow position:chr6:17414552-17414192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:250
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):128, 31

               
               
               Conread position:592-960
               
               
               Cow position:chr6:51526387-51526748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:238
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):82, 76

               
               
               Conread position:593-699
               
               
               Cow position:chr6:61644939-61644830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:89
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:593-736
               
               
               Cow position:chr6:602988-603133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):43, 24

               
               
               Conread position:593-736
               
               
               Cow position:chr6:58364114-58363971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:111
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):103, 31

               
               
               Conread position:593-815
               
               
               Cow position:chr6:38614716-38614928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):109, 24

               
               
               Conread position:593-830
               
               
               Cow position:chr6:7989515-7989284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):28, 79

               
               
               Conread position:593-831
               
               
               Cow position:chr6:27110490-27110729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):77, 126

               
               
               Conread position:593-842
               
               
               Cow position:chr6:1499537-1499783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):78, 30

               
               
               Conread position:593-869
               
               
               Cow position:chr6:67323213-67323479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):137, 65

               
               
               Conread position:593-875
               
               
               Cow position:chr6:35993478-35993759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):27, 81

               
               
               Conread position:593-930
               
               
               Cow position:chr6:46292447-46292127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):129, 50

               
               
               Conread position:593-941
               
               
               Cow position:chr6:56849909-56850256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):119, 30

               
               
               Conread position:593-946
               
               
               Cow position:chr6:15243153-15243505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:248
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):127, 30

               
               
               Conread position:593-947
               
               
               Cow position:chr6:17549084-17548723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:253
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):110, 31

               
               
               Conread position:593-951
               
               
               Cow position:chr6:6400850-6401213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:256
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):109, 11

               
               
               Conread position:593-951
               
               
               Cow position:chr6:21231428-21231761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:251
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):130, 30

               
               
               Conread position:593-951
               
               
               Cow position:chr6:51581356-51581005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 30

               
               
               Conread position:593-951
               
               
               Cow position:chr6:58370650-58370996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:245
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):120, 193

               
               
               Conread position:593-958
               
               
               Cow position:chr6:60274109-60273755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:249
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):75, 14

               
               
               Conread position:593-959
               
               
               Cow position:chr6:34475655-34475300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:247
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):250, 91

               
               
               Conread position:593-959
               
               
               Cow position:chr6:67456610-67456996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:268
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):33, 111

               
               
               Conread position:593-960
               
               
               Cow position:chr6:21456791-21456420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):94, 31

               
               
               Conread position:593-960
               
               
               Cow position:chr6:62669768-62670130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 30

               
               
               Conread position:594-767
               
               
               Cow position:chr6:18961618-18961447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):105, 29

               
               
               Conread position:594-768
               
               
               Cow position:chr6:36928553-36928730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):72, 30

               
               
               Conread position:594-804
               
               
               Cow position:chr6:52248233-52248025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):80, 29

               
               
               Conread position:594-878
               
               
               Cow position:chr6:20196395-20196123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):30, 52

               
               
               Conread position:594-909
               
               
               Cow position:chr6:47799189-47799501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):127, 112

               
               
               Conread position:594-941
               
               
               Cow position:chr6:15242734-15243078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 29

               
               
               Conread position:594-945
               
               
               Cow position:chr6:16700157-16700498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:250
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):29, 115

               
               
               Conread position:594-949
               
               
               Cow position:chr6:60783766-60784118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:232
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):128, 114

               
               
               Conread position:594-950
               
               
               Cow position:chr6:1429537-1429882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:241
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):51, 32

               
               
               Conread position:594-955
               
               
               Cow position:chr6:1886766-1886404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:241
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):258, 55

               
               
               Conread position:594-958
               
               
               Cow position:chr6:45690691-45690362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:252
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):360, 29

               
               
               Conread position:594-959
               
               
               Cow position:chr6:19446157-19446506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 31

               
               
               Conread position:594-959
               
               
               Cow position:chr6:35725993-35726349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:254
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):232, 90

               
               
               Conread position:594-959
               
               
               Cow position:chr6:47519948-47520314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:242
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):129, 29

               
               
               Conread position:594-960
               
               
               Cow position:chr6:7539472-7539831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:252
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):25, 16

               
               
               Conread position:594-960
               
               
               Cow position:chr6:48281894-48282252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):32, 70

               
               
               Conread position:595-753
               
               
               Cow position:chr6:44127505-44127665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):107, 121

               
               
               Conread position:595-876
               
               
               Cow position:chr6:3592300-3592574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):109, 48

               
               
               Conread position:595-903
               
               
               Cow position:chr6:36189596-36189901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):125, 95

               
               
               Conread position:595-950
               
               
               Cow position:chr6:52657826-52658202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:596-918
               
               
               Cow position:chr6:38641394-38641710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):126, 28

               
               
               Conread position:596-925
               
               
               Cow position:chr6:61524301-61523981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):126, 27

               
               
               Conread position:596-929
               
               
               Cow position:chr6:16261683-16262008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):30, 76

               
               
               Conread position:596-937
               
               
               Cow position:chr6:61269209-61269552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):10, 28

               
               
               Conread position:596-949
               
               
               Cow position:chr6:27888249-27888590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):30, 54

               
               
               Conread position:596-949
               
               
               Cow position:chr6:65264639-65264304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:596-949
               
               
               Cow position:chr6:67187586-67187925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):136, 27

               
               
               Conread position:596-951
               
               
               Cow position:chr6:27851808-27851454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:241
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):47, 54

               
               
               Conread position:596-951
               
               
               Cow position:chr6:60118048-60118391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:248
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):25, 96

               
               
               Conread position:596-959
               
               
               Cow position:chr6:6063391-6063034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:243
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):81, 74

               
               
               Conread position:596-960
               
               
               Cow position:chr6:21004568-21004937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 79

               
               
               Conread position:597-820
               
               
               Cow position:chr6:54936479-54936700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):23, 101

               
               
               Conread position:597-820
               
               
               Cow position:chr6:55763754-55763974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):32, 110

               
               
               Conread position:597-935
               
               
               Cow position:chr6:17794855-17794522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:230
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):275, 46

               
               
               Conread position:598-922
               
               
               Cow position:chr6:9719021-9718697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):27, 5

               
               
               Conread position:599-959
               
               
               Cow position:chr6:13564987-13565340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 25

               
               
               Conread position:600-941
               
               
               Cow position:chr6:19292702-19293037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):97, 70

               
               
               Conread position:600-941
               
               
               Cow position:chr6:68376417-68376076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):103, 26

               
               
               Conread position:601-857
               
               
               Cow position:chr6:63047482-63047750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:601-955
               
               
               Cow position:chr6:13687908-13687563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:241
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):104, 22

               
               
               Conread position:602-840
               
               
               Cow position:chr6:20206180-20206416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):17, 108

               
               
               Conread position:603-941
               
               
               Cow position:chr6:55186665-55186329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):120, 106

               
               
               Conread position:604-929
               
               
               Cow position:chr6:39093646-39093972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:604-941
               
               
               Cow position:chr6:143460-143139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):229, 21

               
               
               Conread position:604-958
               
               
               Cow position:chr6:3464196-3464550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):93, 172

               
               
               Conread position:605-941
               
               
               Cow position:chr6:37332016-37332350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):107, 18

               
               
               Conread position:607-960
               
               
               Cow position:chr6:27605430-27605079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:225
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):225, 83

               
               
               Conread position:608-877
               
               
               Cow position:chr6:10487499-10487763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):160, 16

               
               
               Conread position:608-930
               
               
               Cow position:chr6:8161786-8161457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):23, 94

               
               
               Conread position:608-949
               
               
               Cow position:chr6:6067780-6067460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):223, 62

               
               
               Conread position:608-949
               
               
               Cow position:chr6:24110196-24110531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 54

               
               
               Conread position:609-838
               
               
               Cow position:chr6:4389820-4390053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):114, 86

               
               
               Conread position:609-948
               
               
               Cow position:chr6:52478501-52478165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 14

               
               
               Conread position:613-951
               
               
               Cow position:chr6:19045541-19045878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):13, 90

               
               
               Conread position:613-953
               
               
               Cow position:chr6:38441092-38441432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):112, 93

               
               
               Conread position:613-957
               
               
               Cow position:chr6:40049985-40050333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):145, 91

               
               
               Conread position:614-766
               
               
               Cow position:chr6:54365085-54364931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):88, 12

               
               
               Conread position:614-927
               
               
               Cow position:chr6:12092075-12091761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:226
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):108, 10

               
               
               Conread position:614-950
               
               
               Cow position:chr6:67281812-67282142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):12, 77

               
               
               Conread position:615-930
               
               
               Cow position:chr6:22525250-22525553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):109, 89

               
               
               Conread position:615-949
               
               
               Cow position:chr6:24536623-24536279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:240
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):90, 14

               
               
               Conread position:617-941
               
               
               Cow position:chr6:46557974-46558293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:225
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):96, 70

               
               
               Conread position:617-950
               
               
               Cow position:chr6:8599925-8600255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):231, 78

               
               
               Conread position:618-854
               
               
               Cow position:chr6:58608518-58608289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):172, 78

               
               
               Conread position:618-887
               
               
               Cow position:chr6:31260926-31261183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:184
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):195, 7

               
               
               Conread position:618-937
               
               
               Cow position:chr6:16103273-16102956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):239, 46

               
               
               Conread position:618-941
               
               
               Cow position:chr6:4468689-4469005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:618-941
               
               
               Cow position:chr6:16288131-16287828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:221
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:618-949
               
               
               Cow position:chr6:17817061-17816747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:222
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):127, 72

               
               
               Conread position:618-951
               
               
               Cow position:chr6:5330335-5330662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 26

               
               
               Conread position:618-958
               
               
               Cow position:chr6:33509711-33510046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 91

               
               
               Conread position:619-875
               
               
               Cow position:chr6:23466107-23465857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:171
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):229, 78

               
               
               Conread position:620-903
               
               
               Cow position:chr6:2153668-2153395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):110, 14

               
               
               Conread position:620-930
               
               
               Cow position:chr6:41375693-41375998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:218
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):102, 75

               
               
               Conread position:620-937
               
               
               Cow position:chr6:22985935-22985627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:221
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):102, 207

               
               
               Conread position:621-924
               
               
               Cow position:chr6:55205388-55205085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):76, 86

               
               
               Conread position:621-942
               
               
               Cow position:chr6:694223-693905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):148, 50

               
               
               Conread position:621-945
               
               
               Cow position:chr6:37395483-37395158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 9

               
               
               Conread position:622-951
               
               
               Cow position:chr6:55546252-55545923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:225
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):95, 83

               
               
               Conread position:623-941
               
               
               Cow position:chr6:17068723-17068416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:623-946
               
               
               Cow position:chr6:18118125-18117804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):83, 5

               
               
               Conread position:624-951
               
               
               Cow position:chr6:24339211-24339538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:230
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):72, 19

               
               
               Conread position:627-875
               
               
               Cow position:chr6:36284172-36284417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):102, 79

               
               
               Conread position:627-951
               
               
               Cow position:chr6:23353483-23353805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):98, 79

               
               
               Conread position:628-855
               
               
               Cow position:chr6:39137792-39138031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:628-948
               
               
               Cow position:chr6:32043783-32044096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):102, 49

               
               
               Conread position:628-955
               
               
               Cow position:chr6:581813-581487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):102, 69

               
               
               Conread position:629-913
               
               
               Cow position:chr6:67643759-67643478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):23, 16

               
               
               Conread position:629-939
               
               
               Cow position:chr6:9302784-9302486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):23, 61

               
               
               Conread position:629-944
               
               
               Cow position:chr6:14166768-14166450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):131, 56

               
               
               Conread position:630-948
               
               
               Cow position:chr6:6724436-6724756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):67, 86

               
               
               Conread position:633-951
               
               
               Cow position:chr6:60468173-60468484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:221
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):187, 83

               
               
               Conread position:634-949
               
               
               Cow position:chr6:5845235-5844921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):96, 75

               
               
               Conread position:638-941
               
               
               Cow position:chr6:23025172-23024859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):76, 122

               
               
               Conread position:638-959
               
               
               Cow position:chr6:51530245-51529931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:231
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):36, 65

               
               
               Conread position:639-937
               
               
               Cow position:chr6:18144135-18144436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):127, 31

               
               
               Conread position:640-944
               
               
               Cow position:chr6:7627905-7628211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):90, 62

               
               
               Conread position:650-892
               
               
               Cow position:chr6:68652400-68652162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):80, 64

               
               
               Conread position:650-928
               
               
               Cow position:chr6:2584894-2585167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):82, 59

               
               
               Conread position:650-928
               
               
               Cow position:chr6:68816119-68816396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):73, 64

               
               
               Conread position:650-941
               
               
               Cow position:chr6:60144246-60143960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):55, 74

               
               
               Conread position:650-955
               
               
               Cow position:chr6:53145730-53145425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):65, 46

               
               
               Conread position:650-959
               
               
               Cow position:chr6:18608862-18608551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:213
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):54, 81

               
               
               Conread position:651-940
               
               
               Cow position:chr6:6195157-6194864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):73, 62

               
               
               Conread position:651-949
               
               
               Cow position:chr6:94236-93952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:651-951
               
               
               Cow position:chr6:3350973-3351278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:207
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):57, 210

               
               
               Conread position:652-946
               
               
               Cow position:chr6:56986691-56986404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:203
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):5, 54

               
               
               Conread position:652-947
               
               
               Cow position:chr6:51539128-51538826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:200
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):54, 45

               
               
               Conread position:652-955
               
               
               Cow position:chr6:55417572-55417281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:210
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):72, 54

               
               
               Conread position:652-957
               
               
               Cow position:chr6:2078865-2078560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):63, 45

               
               
               Conread position:652-959
               
               
               Cow position:chr6:68643955-68644250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:200
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):267, 43

               
               
               Conread position:653-951
               
               
               Cow position:chr6:62437370-62437665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:655-951
               
               
               Cow position:chr6:8365772-8366063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:655-959
               
               
               Cow position:chr6:7801436-7801144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:207
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:658-941
               
               
               Cow position:chr6:44623568-44623852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):42, 59

               
               
               Conread position:658-950
               
               
               Cow position:chr6:50269712-50269434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):205, 38

               
               
               Conread position:660-941
               
               
               Cow position:chr6:67728333-67728617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):56, 42

               
               
               Conread position:660-959
               
               
               Cow position:chr6:51540971-51541270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):46, 37

               
               
               Conread position:664-941
               
               
               Cow position:chr6:3329954-3330235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):53, 33

               
               
               Conread position:672-945
               
               
               Cow position:chr6:50504428-50504699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):25, 35

               
               
               Conread position:672-949
               
               
               Cow position:chr6:47540872-47540593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):86, 12

               
               
               Conread position:672-956
               
               
               Cow position:chr6:57089171-57089458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):51, 43

               
               
               Conread position:673-941
               
               
               Cow position:chr6:67451397-67451133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):50, 41

               
               
               Conread position:673-949
               
               
               Cow position:chr6:47778849-47779125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):49, 38

               
               
               Conread position:673-950
               
               
               Cow position:chr6:41015001-41014726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):52, 24

               
               
               Conread position:673-951
               
               
               Cow position:chr6:63065800-63066090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):49, 41

               
               
               Conread position:674-959
               
               
               Cow position:chr6:28559503-28559798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):90, 59

               
               
               Conread position:675-896
               
               
               Cow position:chr6:55502743-55502967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):49, 27

               
               
               Conread position:675-929
               
               
               Cow position:chr6:60121622-60121369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):55, 14

               
               
               Conread position:675-941
               
               
               Cow position:chr6:53546013-53546268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):48, 22

               
               
               Conread position:675-944
               
               
               Cow position:chr6:55297123-55296850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:676-949
               
               
               Cow position:chr6:21293518-21293249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):48, 21

               
               
               Conread position:676-958
               
               
               Cow position:chr6:26155130-26155399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):47, 26

               
               
               Conread position:677-949
               
               
               Cow position:chr6:50862920-50863194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):40, 20

               
               
               Conread position:678-947
               
               
               Cow position:chr6:42567472-42567741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):52, 31

               
               
               Conread position:678-958
               
               
               Cow position:chr6:13653331-13653602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):33, 19

               
               
               Conread position:681-941
               
               
               Cow position:chr6:62056596-62056850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):42, 33

               
               
               Conread position:682-941
               
               
               Cow position:chr6:1103752-1103506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:684-930
               
               
               Cow position:chr6:27219165-27219394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):20, 33

               
               
               Conread position:685-929
               
               
               Cow position:chr6:48379628-48379384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:181
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):37, 23

               
               
               Conread position:685-955
               
               
               Cow position:chr6:57079411-57079679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):45, 8

               
               
               Conread position:690-949
               
               
               Cow position:chr6:61109776-61110029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):13, 113

               
               
               Conread position:694-941
               
               
               Cow position:chr6:21475720-21475964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):11, 143

               
               
               Conread position:695-959
               
               
               Cow position:chr6:42034768-42035027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):5, 14

               
               
               Conread position:701-893
               
               
               Cow position:chr6:69153415-69153603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):29, 14

               
               
               Conread position:703-941
               
               
               Cow position:chr6:66839202-66839432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):27, 11

               
               
               Conread position:706-951
               
               
               Cow position:chr6:54846272-54846025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):232, 0

               
               
               Conread position:707-960
               
               
               Cow position:chr6:1941825-1941574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):16, 69

               
               
               Conread position:708-941
               
               
               Cow position:chr6:21470420-21470193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):15, 6

               
               
               Conread position:709-924
               
               
               Cow position:chr6:1871187-1870975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):120, 7

               
               
               Conread position:710-936
               
               
               Cow position:chr6:37692761-37692983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):20, 43

               
               
               Conread position:710-944
               
               
               Cow position:chr6:12928156-12928382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):22, 47

               
               
               Conread position:710-949
               
               
               Cow position:chr6:67069805-67069567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):13, 33

               
               
               Conread position:710-958
               
               
               Cow position:chr6:58725380-58725623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):12, 76

               
               
               Conread position:710-959
               
               
               Cow position:chr6:32453395-32453650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):20, 112

               
               
               Conread position:711-941
               
               
               Cow position:chr6:4144652-4144881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):19, 136

               
               
               Conread position:711-951
               
               
               Cow position:chr6:60850712-60850949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):117, 131

               
               
               Conread position:711-959
               
               
               Cow position:chr6:8688836-8688594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):31, 142

               
               
               Conread position:711-959
               
               
               Cow position:chr6:58304425-58304670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):11, 140

               
               
               Conread position:711-960
               
               
               Cow position:chr6:42483428-42483674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):232, 11

               
               
               Conread position:712-959
               
               
               Cow position:chr6:30023897-30024138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):11, 127

               
               
               Conread position:713-894
               
               
               Cow position:chr6:31865111-31865287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):17, 34

               
               
               Conread position:714-937
               
               
               Cow position:chr6:48435849-48436065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:716-941
               
               
               Cow position:chr6:1866749-1866970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):183, 22

               
               
               Conread position:716-951
               
               
               Cow position:chr6:35319118-35318885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):14, 154

               
               
               Conread position:716-959
               
               
               Cow position:chr6:12761297-12761541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):223, 5

               
               
               Conread position:725-948
               
               
               Cow position:chr6:42728671-42728892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:725-948
               
               
               Cow position:chr6:47782887-47783113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:725-949
               
               
               Cow position:chr6:14056444-14056221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):84, 100

               
               
               Conread position:725-949
               
               
               Cow position:chr6:47648210-47647987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:726-950
               
               
               Cow position:chr6:50771332-50771113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:729-932
               
               
               Cow position:chr6:65535141-65534938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:729-948
               
               
               Cow position:chr6:66259759-66259984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):35, 45

               
               
               Conread position:730-937
               
               
               Cow position:chr6:43787880-43787673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:730-941
               
               
               Cow position:chr6:16380575-16380787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):186, 0

               
               
               Conread position:730-958
               
               
               Cow position:chr6:16090934-16091153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:731-959
               
               
               Cow position:chr6:8369456-8369681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):50, 10

               
               
               Conread position:732-941
               
               
               Cow position:chr6:5601735-5601939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):164, 37

               
               
               Conread position:732-949
               
               
               Cow position:chr6:22876898-22876681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:738-956
               
               
               Cow position:chr6:45921175-45920962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):204, 112

               
               
               Conread position:738-960
               
               
               Cow position:chr6:56022516-56022295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):205, 0

               
               
               Conread position:740-949
               
               
               Cow position:chr6:55044601-55044394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:740-958
               
               
               Cow position:chr6:41657308-41657522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):205, 119

               
               
               Conread position:741-949
               
               
               Cow position:chr6:15587553-15587345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:741-949
               
               
               Cow position:chr6:19809977-19810189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):93, 84

               
               
               Conread position:741-949
               
               
               Cow position:chr6:62724597-62724805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:741-951
               
               
               Cow position:chr6:24776180-24776387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:741-959
               
               
               Cow position:chr6:56061702-56061920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:742-945
               
               
               Cow position:chr6:13742031-13742230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):88, 59

               
               
               Conread position:742-945
               
               
               Cow position:chr6:19563441-19563236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:742-949
               
               
               Cow position:chr6:55548491-55548287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:743-950
               
               
               Cow position:chr6:23058255-23058462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:746-955
               
               
               Cow position:chr6:1173910-1173695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):7, 12

               
               
               Conread position:748-896
               
               
               Cow position:chr6:58076442-58076590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:756-941
               
               
               Cow position:chr6:57467653-57467838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:757-942
               
               
               Cow position:chr6:50883618-50883439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:759-945
               
               
               Cow position:chr6:54820891-54821077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:771-949
               
               
               Cow position:chr6:38032929-38033104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:773-911
               
               
               Cow position:chr6:30895918-30895781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:773-925
               
               
               Cow position:chr6:17172900-17173051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:773-939
               
               
               Cow position:chr6:47245854-47246019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):49, 12

               
               
               Conread position:773-941
               
               
               Cow position:chr6:18440404-18440239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:773-941
               
               
               Cow position:chr6:21184149-21183984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:773-941
               
               
               Cow position:chr6:28088974-28088808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:773-941
               
               
               Cow position:chr6:53811656-53811825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:773-941
               
               
               Cow position:chr6:58697558-58697390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:773-945
               
               
               Cow position:chr6:5445741-5445911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:773-945
               
               
               Cow position:chr6:35985063-35984891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:773-948
               
               
               Cow position:chr6:43906610-43906434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):167, 0

               
               
               Conread position:773-950
               
               
               Cow position:chr6:14263817-14263641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):15, 40

               
               
               Conread position:773-951
               
               
               Cow position:chr6:4760065-4760242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:773-954
               
               
               Cow position:chr6:34076235-34076415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):37, 89

               
               
               Conread position:773-960
               
               
               Cow position:chr6:14150306-14150123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:774-933
               
               
               Cow position:chr6:63182363-63182516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:774-935
               
               
               Cow position:chr6:8726752-8726910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:774-941
               
               
               Cow position:chr6:34423384-34423221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:774-941
               
               
               Cow position:chr6:44544074-44543908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:774-945
               
               
               Cow position:chr6:60186588-60186408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:774-947
               
               
               Cow position:chr6:15058451-15058619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:774-949
               
               
               Cow position:chr6:16411685-16411860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:774-949
               
               
               Cow position:chr6:54679602-54679779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:774-954
               
               
               Cow position:chr6:34569482-34569667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):94, 63

               
               
               Conread position:774-955
               
               
               Cow position:chr6:7291390-7291564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:775-941
               
               
               Cow position:chr6:26054829-26054661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:775-941
               
               
               Cow position:chr6:26408429-26408263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:775-941
               
               
               Cow position:chr6:49421716-49421557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:775-947
               
               
               Cow position:chr6:16502970-16502797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:775-949
               
               
               Cow position:chr6:49685893-49686067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:775-949
               
               
               Cow position:chr6:66293560-66293730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:775-951
               
               
               Cow position:chr6:8187114-8186937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):167, 0

               
               
               Conread position:775-951
               
               
               Cow position:chr6:17194287-17194476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:775-951
               
               
               Cow position:chr6:19936494-19936319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:775-951
               
               
               Cow position:chr6:21052374-21052197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:775-951
               
               
               Cow position:chr6:24903502-24903328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):164, 0

               
               
               Conread position:775-951
               
               
               Cow position:chr6:34463512-34463341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):23, 27

               
               
               Conread position:775-959
               
               
               Cow position:chr6:16137695-16137512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):67, 179

               
               
               Conread position:775-960
               
               
               Cow position:chr6:32336107-32336295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):86, 172

               
               
               Conread position:776-937
               
               
               Cow position:chr6:21350956-21350796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):98, 25

               
               
               Conread position:776-941
               
               
               Cow position:chr6:63168690-63168524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):57, 85

               
               
               Conread position:777-959
               
               
               Cow position:chr6:54840430-54840243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:777-959
               
               
               Cow position:chr6:59101244-59101062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:780-929
               
               
               Cow position:chr6:61644778-61644629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:780-941
               
               
               Cow position:chr6:16627815-16627968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:780-941
               
               
               Cow position:chr6:36225189-36225349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:780-945
               
               
               Cow position:chr6:39414903-39415067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):12, 74

               
               
               Conread position:780-955
               
               
               Cow position:chr6:54406719-54406551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):162, 70

               
               
               Conread position:780-960
               
               
               Cow position:chr6:32006374-32006200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:781-941
               
               
               Cow position:chr6:24651900-24651743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:781-949
               
               
               Cow position:chr6:47150901-47151065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:782-929
               
               
               Cow position:chr6:14471445-14471592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:782-941
               
               
               Cow position:chr6:59687730-59687571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:782-941
               
               
               Cow position:chr6:62805725-62805884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:782-947
               
               
               Cow position:chr6:66329620-66329459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:782-949
               
               
               Cow position:chr6:20075876-20076044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):17, 60

               
               
               Conread position:782-949
               
               
               Cow position:chr6:56581976-56581807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:782-950
               
               
               Cow position:chr6:45471507-45471336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:782-951
               
               
               Cow position:chr6:36809122-36808953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):59, 71

               
               
               Conread position:782-951
               
               
               Cow position:chr6:45159975-45159806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:782-957
               
               
               Cow position:chr6:28562086-28561913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:782-959
               
               
               Cow position:chr6:36163826-36164002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):171, 0

               
               
               Conread position:782-960
               
               
               Cow position:chr6:16357519-16357701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:783-941
               
               
               Cow position:chr6:3936866-3937026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:786-937
               
               
               Cow position:chr6:50445031-50444880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:787-944
               
               
               Cow position:chr6:4049065-4048908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:787-945
               
               
               Cow position:chr6:26764740-26764579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:787-945
               
               
               Cow position:chr6:55945876-55945713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:787-951
               
               
               Cow position:chr6:12099599-12099441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:787-959
               
               
               Cow position:chr6:31928724-31928895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):156, 0

               
               
               Conread position:790-945
               
               
               Cow position:chr6:57935482-57935333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:790-948
               
               
               Cow position:chr6:16016124-16016282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):150, 51

               
               
               Conread position:790-950
               
               
               Cow position:chr6:37827856-37827701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:790-959
               
               
               Cow position:chr6:35775572-35775742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:790-959
               
               
               Cow position:chr6:54828232-54828060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):150, 0

               
               
               Conread position:790-960
               
               
               Cow position:chr6:21347060-21346893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):153, 67

               
               
               Conread position:791-941
               
               
               Cow position:chr6:66058616-66058470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:791-958
               
               
               Cow position:chr6:15111750-15111575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:793-958
               
               
               Cow position:chr6:53138843-53138682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:794-949
               
               
               Cow position:chr6:23381574-23381419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:801-936
               
               
               Cow position:chr6:61884073-61883939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):53, 28

               
               
               Conread position:802-952
               
               
               Cow position:chr6:57143594-57143442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:808-947
               
               
               Cow position:chr6:65831469-65831608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:812-959
               
               
               Cow position:chr6:12711689-12711535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):46, 11

               
               
               Conread position:828-944
               
               
               Cow position:chr6:16738741-16738857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:828-959
               
               
               Cow position:chr6:51019277-51019407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:99
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:829-960
               
               
               Cow position:chr6:36267126-36267259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:535-948
               
               
               Cow position:chr7:30185950-30185540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):274, 0

               
               
               Conread position:536-824
               
               
               Cow position:chr7:8102254-8102548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):25, 18

               
               
               Conread position:547-944
               
               
               Cow position:chr7:39164239-39164637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:262
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):166, 7

               
               
               Conread position:547-949
               
               
               Cow position:chr7:68173303-68172908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:274
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):46, 7

               
               
               Conread position:549-875
               
               
               Cow position:chr7:45157977-45158295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):70, 15

               
               
               Conread position:553-944
               
               
               Cow position:chr7:19330795-19330409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:554-854
               
               
               Cow position:chr7:61732031-61731735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:192
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):17, 132

               
               
               Conread position:556-882
               
               
               Cow position:chr7:25872957-25873281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):22, 151

               
               
               Conread position:560-817
               
               
               Cow position:chr7:23251699-23251446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):8, 67

               
               
               Conread position:562-875
               
               
               Cow position:chr7:26485448-26485742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):31, 62

               
               
               Conread position:562-921
               
               
               Cow position:chr7:26911576-26911219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):13, 146

               
               
               Conread position:562-951
               
               
               Cow position:chr7:32260330-32259946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:261
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):139, 19

               
               
               Conread position:562-959
               
               
               Cow position:chr7:14520174-14519782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 7

               
               
               Conread position:565-854
               
               
               Cow position:chr7:255946-255662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):6, 104

               
               
               Conread position:565-950
               
               
               Cow position:chr7:39147665-39148053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:259
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):29, 224

               
               
               Conread position:566-699
               
               
               Cow position:chr7:24778243-24778112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:566-706
               
               
               Cow position:chr7:43055830-43055688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:566-749
               
               
               Cow position:chr7:53269060-53269254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:566-805
               
               
               Cow position:chr7:40121336-40121580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):26, 44

               
               
               Conread position:566-819
               
               
               Cow position:chr7:19267500-19267248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):11, 153

               
               
               Conread position:566-874
               
               
               Cow position:chr7:25512251-25511949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:214
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):150, 134

               
               
               Conread position:566-874
               
               
               Cow position:chr7:41328169-41327859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):26, 58

               
               
               Conread position:566-928
               
               
               Cow position:chr7:8813057-8812706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:244
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):60, 131

               
               
               Conread position:566-937
               
               
               Cow position:chr7:42593404-42593027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:264
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):26, 41

               
               
               Conread position:566-941
               
               
               Cow position:chr7:23205760-23205387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):26, 54

               
               
               Conread position:566-941
               
               
               Cow position:chr7:35275208-35274845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 57

               
               
               Conread position:566-941
               
               
               Cow position:chr7:42894319-42894700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:266
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):156, 19

               
               
               Conread position:566-951
               
               
               Cow position:chr7:64135595-64135216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 140

               
               
               Conread position:566-952
               
               
               Cow position:chr7:14029205-14029558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:275
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):28, 59

               
               
               Conread position:566-958
               
               
               Cow position:chr7:24796823-24796452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:263
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):7, 101

               
               
               Conread position:566-959
               
               
               Cow position:chr7:40566943-40567319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:272
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):26, 58

               
               
               Conread position:568-850
               
               
               Cow position:chr7:36830528-36830804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):7, 61

               
               
               Conread position:569-951
               
               
               Cow position:chr7:63946707-63946347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:253
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):153, 54

               
               
               Conread position:571-753
               
               
               Cow position:chr7:11715588-11715771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):155, 16

               
               
               Conread position:571-903
               
               
               Cow position:chr7:50772854-50772528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):151, 18

               
               
               Conread position:573-938
               
               
               Cow position:chr7:57593316-57593663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:237
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):150, 38

               
               
               Conread position:574-726
               
               
               Cow position:chr7:60749058-60749209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):52, 84

               
               
               Conread position:574-736
               
               
               Cow position:chr7:28090113-28090273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):148, 50

               
               
               Conread position:574-808
               
               
               Cow position:chr7:24932540-24932306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):19, 141

               
               
               Conread position:574-842
               
               
               Cow position:chr7:7506256-7505981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):19, 51

               
               
               Conread position:574-866
               
               
               Cow position:chr7:2172630-2172919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):20, 68

               
               
               Conread position:574-929
               
               
               Cow position:chr7:68315124-68315471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:241
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):281, 52

               
               
               Conread position:574-940
               
               
               Cow position:chr7:57660289-57659922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:255
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):22, 99

               
               
               Conread position:574-941
               
               
               Cow position:chr7:21240236-21239888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):19, 134

               
               
               Conread position:574-941
               
               
               Cow position:chr7:60120885-60121267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:252
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):55, 13

               
               
               Conread position:574-950
               
               
               Cow position:chr7:19798059-19797678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 85

               
               
               Conread position:574-951
               
               
               Cow position:chr7:1376020-1376377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:262
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):18, 51

               
               
               Conread position:575-860
               
               
               Cow position:chr7:48638448-48638737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):17, 87

               
               
               Conread position:575-924
               
               
               Cow position:chr7:59168153-59168475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:228
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):147, 48

               
               
               Conread position:576-736
               
               
               Cow position:chr7:36714749-36714589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):16, 102

               
               
               Conread position:576-752
               
               
               Cow position:chr7:10551096-10550919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):16, 96

               
               
               Conread position:576-867
               
               
               Cow position:chr7:39155460-39155747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):140, 9

               
               
               Conread position:576-872
               
               
               Cow position:chr7:10512827-10512537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):273, 47

               
               
               Conread position:576-882
               
               
               Cow position:chr7:57259146-57258838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 37

               
               
               Conread position:576-936
               
               
               Cow position:chr7:49106320-49105967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 48

               
               
               Conread position:576-936
               
               
               Cow position:chr7:67816790-67817135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:235
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):250, 13

               
               
               Conread position:576-940
               
               
               Cow position:chr7:4764729-4765079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 51

               
               
               Conread position:576-941
               
               
               Cow position:chr7:36569735-36570106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):125, 13

               
               
               Conread position:576-941
               
               
               Cow position:chr7:44454399-44454026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 131

               
               
               Conread position:576-941
               
               
               Cow position:chr7:50566319-50565953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:250
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):6, 54

               
               
               Conread position:576-941
               
               
               Cow position:chr7:53806933-53806568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:243
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):38, 14

               
               
               Conread position:576-945
               
               
               Cow position:chr7:31503739-31504094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:250
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:576-951
               
               
               Cow position:chr7:52776870-52776511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:260
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:577-697
               
               
               Cow position:chr7:20415422-20415300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:577-707
               
               
               Cow position:chr7:39930175-39930306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):123, 51

               
               
               Conread position:577-720
               
               
               Cow position:chr7:14712316-14712176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):125, 14

               
               
               Conread position:577-736
               
               
               Cow position:chr7:35742524-35742362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):15, 141

               
               
               Conread position:577-753
               
               
               Cow position:chr7:61765196-61765374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):42, 23

               
               
               Conread position:577-809
               
               
               Cow position:chr7:22624219-22623990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):15, 27

               
               
               Conread position:577-839
               
               
               Cow position:chr7:5212596-5212334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):15, 131

               
               
               Conread position:577-853
               
               
               Cow position:chr7:25867623-25867344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):93, 15

               
               
               Conread position:577-934
               
               
               Cow position:chr7:58863005-58862642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 149

               
               
               Conread position:577-938
               
               
               Cow position:chr7:3304451-3304817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 76

               
               
               Conread position:577-941
               
               
               Cow position:chr7:61790474-61790112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 95

               
               
               Conread position:577-948
               
               
               Cow position:chr7:53097471-53097842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 47

               
               
               Conread position:577-955
               
               
               Cow position:chr7:37455201-37455580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:262
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):22, 96

               
               
               Conread position:577-955
               
               
               Cow position:chr7:52378507-52378877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:265
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):10, 134

               
               
               Conread position:578-944
               
               
               Cow position:chr7:47931916-47931547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 14

               
               
               Conread position:578-957
               
               
               Cow position:chr7:600219-600569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:258
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):14, 49

               
               
               Conread position:578-957
               
               
               Cow position:chr7:44049486-44049114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:244
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):138, 34

               
               
               Conread position:579-746
               
               
               Cow position:chr7:26888076-26887906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):13, 46

               
               
               Conread position:579-759
               
               
               Cow position:chr7:44942336-44942516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):18, 127

               
               
               Conread position:579-917
               
               
               Cow position:chr7:26737450-26737124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):278, 40

               
               
               Conread position:579-942
               
               
               Cow position:chr7:31315199-31315543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:579-951
               
               
               Cow position:chr7:68577134-68577484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:253
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):9, 24

               
               
               Conread position:580-933
               
               
               Cow position:chr7:913930-914281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):50, 22

               
               
               Conread position:580-960
               
               
               Cow position:chr7:36247982-36248352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 8

               
               
               Conread position:581-707
               
               
               Cow position:chr7:21649989-21650115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:98
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):11, 44

               
               
               Conread position:581-804
               
               
               Cow position:chr7:34223576-34223801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):11, 126

               
               
               Conread position:581-840
               
               
               Cow position:chr7:35893303-35893559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:581-848
               
               
               Cow position:chr7:23646493-23646762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:581-850
               
               
               Cow position:chr7:58170627-58170892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):11, 46

               
               
               Conread position:581-875
               
               
               Cow position:chr7:45331435-45331716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:581-937
               
               
               Cow position:chr7:20534763-20535109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:250
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):11, 23

               
               
               Conread position:581-937
               
               
               Cow position:chr7:32894360-32894002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:581-937
               
               
               Cow position:chr7:48722015-48721668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 42

               
               
               Conread position:581-941
               
               
               Cow position:chr7:30932086-30931742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 6

               
               
               Conread position:581-941
               
               
               Cow position:chr7:47697904-47698259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:252
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):142, 15

               
               
               Conread position:581-941
               
               
               Cow position:chr7:54712305-54712657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):7, 43

               
               
               Conread position:581-946
               
               
               Cow position:chr7:58302053-58301691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:253
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:581-949
               
               
               Cow position:chr7:46823555-46823922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 126

               
               
               Conread position:581-950
               
               
               Cow position:chr7:8877764-8878134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 30

               
               
               Conread position:581-950
               
               
               Cow position:chr7:43711105-43711462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:245
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):11, 46

               
               
               Conread position:581-951
               
               
               Cow position:chr7:40406545-40406894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:256
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):5, 43

               
               
               Conread position:581-952
               
               
               Cow position:chr7:30768830-30768460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:232
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):152, 48

               
               
               Conread position:584-720
               
               
               Cow position:chr7:58296998-58296865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:585-742
               
               
               Cow position:chr7:39401850-39402005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):137, 121

               
               
               Conread position:585-813
               
               
               Cow position:chr7:3773375-3773150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):137, 22

               
               
               Conread position:585-820
               
               
               Cow position:chr7:38263561-38263796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):30, 40

               
               
               Conread position:585-937
               
               
               Cow position:chr7:23679700-23679355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):178, 38

               
               
               Conread position:585-941
               
               
               Cow position:chr7:10943658-10943303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:252
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):122, 38

               
               
               Conread position:585-941
               
               
               Cow position:chr7:28563491-28563157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:232
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):48, 97

               
               
               Conread position:585-945
               
               
               Cow position:chr7:25195430-25195795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 87

               
               
               Conread position:585-949
               
               
               Cow position:chr7:9136725-9137099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 38

               
               
               Conread position:585-949
               
               
               Cow position:chr7:25393179-25393548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:265
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):50, 144

               
               
               Conread position:585-954
               
               
               Cow position:chr7:15569933-15570290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:253
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):100, 38

               
               
               Conread position:585-955
               
               
               Cow position:chr7:14524371-14524727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:256
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):94, 39

               
               
               Conread position:585-959
               
               
               Cow position:chr7:23624758-23624406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:252
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):145, 64

               
               
               Conread position:585-960
               
               
               Cow position:chr7:53552050-53551674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:253
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):41, 60

               
               
               Conread position:586-903
               
               
               Cow position:chr7:30816394-30816084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):257, 37

               
               
               Conread position:589-855
               
               
               Cow position:chr7:59075741-59076008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:188
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):32, 85

               
               
               Conread position:589-930
               
               
               Cow position:chr7:51063185-51063525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:242
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):133, 39

               
               
               Conread position:591-700
               
               
               Cow position:chr7:12202026-12201917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:90
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:591-711
               
               
               Cow position:chr7:53034426-53034303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:591-718
               
               
               Cow position:chr7:23619188-23619062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-722
               
               
               Cow position:chr7:33810580-33810708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:105
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:591-736
               
               
               Cow position:chr7:23641058-23640918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:591-738
               
               
               Cow position:chr7:4418565-4418417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:591-748
               
               
               Cow position:chr7:24564717-24564566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):135, 79

               
               
               Conread position:591-751
               
               
               Cow position:chr7:7142165-7142004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):35, 116

               
               
               Conread position:591-752
               
               
               Cow position:chr7:5300494-5300336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):28, 51

               
               
               Conread position:591-752
               
               
               Cow position:chr7:32372756-32372916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):131, 34

               
               
               Conread position:591-752
               
               
               Cow position:chr7:42431725-42431884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:591-753
               
               
               Cow position:chr7:21573183-21573349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):30, 67

               
               
               Conread position:591-759
               
               
               Cow position:chr7:51072137-51072306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):35, 101

               
               
               Conread position:591-760
               
               
               Cow position:chr7:61818041-61817872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):119, 32

               
               
               Conread position:591-761
               
               
               Cow position:chr7:44095046-44094870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:591-765
               
               
               Cow position:chr7:32819713-32819887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):129, 32

               
               
               Conread position:591-776
               
               
               Cow position:chr7:68909084-68909266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):35, 60

               
               
               Conread position:591-788
               
               
               Cow position:chr7:42429770-42429968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):35, 113

               
               
               Conread position:591-791
               
               
               Cow position:chr7:14353892-14353694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-798
               
               
               Cow position:chr7:40051858-40051658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:591-813
               
               
               Cow position:chr7:44589953-44589742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:591-815
               
               
               Cow position:chr7:2923543-2923766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):129, 32

               
               
               Conread position:591-816
               
               
               Cow position:chr7:17756935-17757152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):46, 33

               
               
               Conread position:591-824
               
               
               Cow position:chr7:25496631-25496851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-831
               
               
               Cow position:chr7:51319697-51319941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):131, 21

               
               
               Conread position:591-840
               
               
               Cow position:chr7:48243571-48243815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-846
               
               
               Cow position:chr7:2884241-2884487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):7, 56

               
               
               Conread position:591-848
               
               
               Cow position:chr7:9193347-9193086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):28, 59

               
               
               Conread position:591-848
               
               
               Cow position:chr7:28544073-28544327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):131, 33

               
               
               Conread position:591-848
               
               
               Cow position:chr7:32079351-32079602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):131, 35

               
               
               Conread position:591-848
               
               
               Cow position:chr7:49648262-49648508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):135, 33

               
               
               Conread position:591-848
               
               
               Cow position:chr7:65122240-65122483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):136, 16

               
               
               Conread position:591-855
               
               
               Cow position:chr7:19230614-19230355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):210, 64

               
               
               Conread position:591-855
               
               
               Cow position:chr7:34412377-34412120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):131, 117

               
               
               Conread position:591-857
               
               
               Cow position:chr7:58351065-58350806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:182
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):28, 166

               
               
               Conread position:591-862
               
               
               Cow position:chr7:53988950-53989215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):62, 33

               
               
               Conread position:591-866
               
               
               Cow position:chr7:39518196-39518452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):131, 77

               
               
               Conread position:591-866
               
               
               Cow position:chr7:60153340-60153620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):34, 97

               
               
               Conread position:591-867
               
               
               Cow position:chr7:6608115-6608400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):35, 102

               
               
               Conread position:591-867
               
               
               Cow position:chr7:32711079-32710815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:591-867
               
               
               Cow position:chr7:38060532-38060256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):139, 123

               
               
               Conread position:591-873
               
               
               Cow position:chr7:52718737-52718463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):131, 33

               
               
               Conread position:591-874
               
               
               Cow position:chr7:64364629-64364351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):130, 32

               
               
               Conread position:591-875
               
               
               Cow position:chr7:12408338-12408066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):169, 35

               
               
               Conread position:591-875
               
               
               Cow position:chr7:20176808-20176530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):29, 39

               
               
               Conread position:591-875
               
               
               Cow position:chr7:38082053-38082334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-875
               
               
               Cow position:chr7:40074573-40074859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):106, 11

               
               
               Conread position:591-875
               
               
               Cow position:chr7:41464370-41464644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):37, 73

               
               
               Conread position:591-875
               
               
               Cow position:chr7:44986548-44986831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):131, 117

               
               
               Conread position:591-875
               
               
               Cow position:chr7:58923293-58923576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:206
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):35, 116

               
               
               Conread position:591-876
               
               
               Cow position:chr7:37361780-37362054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:591-878
               
               
               Cow position:chr7:52784902-52784623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):136, 33

               
               
               Conread position:591-883
               
               
               Cow position:chr7:27283580-27283860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-896
               
               
               Cow position:chr7:40710009-40710323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:230
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):75, 288

               
               
               Conread position:591-899
               
               
               Cow position:chr7:8785863-8786157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:207
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):237, 32

               
               
               Conread position:591-929
               
               
               Cow position:chr7:17967220-17966897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):106, 33

               
               
               Conread position:591-929
               
               
               Cow position:chr7:18188324-18188000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):129, 33

               
               
               Conread position:591-930
               
               
               Cow position:chr7:31094451-31094102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):86, 26

               
               
               Conread position:591-935
               
               
               Cow position:chr7:1761615-1761966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:249
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):36, 98

               
               
               Conread position:591-935
               
               
               Cow position:chr7:43908104-43908430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):88, 32

               
               
               Conread position:591-935
               
               
               Cow position:chr7:54013258-54013613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:591-936
               
               
               Cow position:chr7:56820674-56820352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-937
               
               
               Cow position:chr7:11176809-11176498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):31, 55

               
               
               Conread position:591-937
               
               
               Cow position:chr7:13593663-13594012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 126

               
               
               Conread position:591-937
               
               
               Cow position:chr7:14536386-14536051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 126

               
               
               Conread position:591-937
               
               
               Cow position:chr7:20537260-20537592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):111, 33

               
               
               Conread position:591-937
               
               
               Cow position:chr7:20968332-20968661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):270, 32

               
               
               Conread position:591-937
               
               
               Cow position:chr7:34433382-34433042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:239
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):132, 68

               
               
               Conread position:591-938
               
               
               Cow position:chr7:26838553-26838890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):316, 129

               
               
               Conread position:591-938
               
               
               Cow position:chr7:37394214-37394537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-938
               
               
               Cow position:chr7:37952080-37952434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:239
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):131, 52

               
               
               Conread position:591-938
               
               
               Cow position:chr7:40067556-40067918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:249
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):261, 119

               
               
               Conread position:591-939
               
               
               Cow position:chr7:5199653-5199319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:245
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):134, 32

               
               
               Conread position:591-939
               
               
               Cow position:chr7:62603080-62603421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:243
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):46, 116

               
               
               Conread position:591-940
               
               
               Cow position:chr7:4720334-4719986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:243
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):55, 32

               
               
               Conread position:591-940
               
               
               Cow position:chr7:23636605-23636950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):258, 34

               
               
               Conread position:591-940
               
               
               Cow position:chr7:49417501-49417846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):321, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr7:11960314-11960632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:591-941
               
               
               Cow position:chr7:28916984-28917342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:248
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):17, 33

               
               
               Conread position:591-941
               
               
               Cow position:chr7:34084349-34084013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):83, 77

               
               
               Conread position:591-941
               
               
               Cow position:chr7:35286743-35286405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:244
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):35, 113

               
               
               Conread position:591-941
               
               
               Cow position:chr7:39415806-39416147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr7:41315537-41315184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr7:46051552-46051901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:240
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):131, 77

               
               
               Conread position:591-941
               
               
               Cow position:chr7:47775765-47776105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:234
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):37, 58

               
               
               Conread position:591-941
               
               
               Cow position:chr7:51019680-51020021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:241
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):35, 16

               
               
               Conread position:591-941
               
               
               Cow position:chr7:59688433-59688777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:251
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:591-941
               
               
               Cow position:chr7:62733081-62733431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:250
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):131, 104

               
               
               Conread position:591-941
               
               
               Cow position:chr7:66748627-66748291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:245
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):253, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr7:68050999-68051352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):134, 32

               
               
               Conread position:591-942
               
               
               Cow position:chr7:20168449-20168788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-944
               
               
               Cow position:chr7:10369282-10368937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:230
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):177, 73

               
               
               Conread position:591-945
               
               
               Cow position:chr7:43109635-43109291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:246
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):32, 105

               
               
               Conread position:591-947
               
               
               Cow position:chr7:48667323-48667649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):132, 16

               
               
               Conread position:591-949
               
               
               Cow position:chr7:6706193-6706551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:243
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):35, 108

               
               
               Conread position:591-949
               
               
               Cow position:chr7:8821374-8821720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:238
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):131, 26

               
               
               Conread position:591-949
               
               
               Cow position:chr7:21166350-21165992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 125

               
               
               Conread position:591-949
               
               
               Cow position:chr7:24827854-24827493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:239
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):132, 51

               
               
               Conread position:591-949
               
               
               Cow position:chr7:32283814-32284173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 116

               
               
               Conread position:591-949
               
               
               Cow position:chr7:34428469-34428828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 108

               
               
               Conread position:591-949
               
               
               Cow position:chr7:44596802-44596457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):316, 32

               
               
               Conread position:591-949
               
               
               Cow position:chr7:47513790-47513438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 32

               
               
               Conread position:591-949
               
               
               Cow position:chr7:47547303-47547654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 79

               
               
               Conread position:591-949
               
               
               Cow position:chr7:51039320-51039680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 213

               
               
               Conread position:591-950
               
               
               Cow position:chr7:3026826-3026465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:248
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):38, 110

               
               
               Conread position:591-950
               
               
               Cow position:chr7:4129884-4129537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):139, 27

               
               
               Conread position:591-950
               
               
               Cow position:chr7:40321383-40321728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:251
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):97, 116

               
               
               Conread position:591-950
               
               
               Cow position:chr7:55085553-55085918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:250
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):141, 106

               
               
               Conread position:591-951
               
               
               Cow position:chr7:11066372-11066722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 136

               
               
               Conread position:591-951
               
               
               Cow position:chr7:18388504-18388144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 107

               
               
               Conread position:591-951
               
               
               Cow position:chr7:33280092-33279735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:253
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):35, 60

               
               
               Conread position:591-951
               
               
               Cow position:chr7:42223052-42222692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 83

               
               
               Conread position:591-951
               
               
               Cow position:chr7:50859910-50860249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):134, 28

               
               
               Conread position:591-951
               
               
               Cow position:chr7:53763687-53763339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 33

               
               
               Conread position:591-952
               
               
               Cow position:chr7:48020318-48020677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 33

               
               
               Conread position:591-955
               
               
               Cow position:chr7:2897058-2897400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:252
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):29, 121

               
               
               Conread position:591-955
               
               
               Cow position:chr7:29479423-29479775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 33

               
               
               Conread position:591-956
               
               
               Cow position:chr7:50900790-50900417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:259
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):30, 58

               
               
               Conread position:591-956
               
               
               Cow position:chr7:63749577-63749223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-958
               
               
               Cow position:chr7:8777099-8777465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):97, 238

               
               
               Conread position:591-958
               
               
               Cow position:chr7:14076371-14076030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):37, 54

               
               
               Conread position:591-958
               
               
               Cow position:chr7:22651929-22651547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:261
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):17, 116

               
               
               Conread position:591-958
               
               
               Cow position:chr7:39444703-39444364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:253
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:591-959
               
               
               Cow position:chr7:11958533-11958180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:260
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-959
               
               
               Cow position:chr7:14174517-14174183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:262
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):296, 32

               
               
               Conread position:591-959
               
               
               Cow position:chr7:15559589-15559941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-959
               
               
               Cow position:chr7:16022195-16022550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 33

               
               
               Conread position:591-959
               
               
               Cow position:chr7:20051567-20051210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:247
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):257, 58

               
               
               Conread position:591-959
               
               
               Cow position:chr7:31694730-31694370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:253
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):243, 32

               
               
               Conread position:591-959
               
               
               Cow position:chr7:32945971-32946327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:252
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):350, 32

               
               
               Conread position:591-959
               
               
               Cow position:chr7:36533929-36534283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:238
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):184, 32

               
               
               Conread position:591-959
               
               
               Cow position:chr7:39158574-39158946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):118, 58

               
               
               Conread position:591-959
               
               
               Cow position:chr7:39160078-39160440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:250
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):119, 61

               
               
               Conread position:591-959
               
               
               Cow position:chr7:39167362-39167718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:246
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):36, 69

               
               
               Conread position:591-959
               
               
               Cow position:chr7:46818597-46818238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 33

               
               
               Conread position:591-960
               
               
               Cow position:chr7:39538118-39538487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:246
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):35, 95

               
               
               Conread position:591-960
               
               
               Cow position:chr7:48714749-48715124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 33

               
               
               Conread position:591-960
               
               
               Cow position:chr7:53053504-53053146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):303, 32

               
               
               Conread position:592-697
               
               
               Cow position:chr7:8809683-8809788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:85
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:592-700
               
               
               Cow position:chr7:31881575-31881682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:90
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:592-743
               
               
               Cow position:chr7:35652181-35652026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):30, 124

               
               
               Conread position:592-760
               
               
               Cow position:chr7:43411277-43411440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:592-807
               
               
               Cow position:chr7:39155007-39155224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):35, 102

               
               
               Conread position:592-808
               
               
               Cow position:chr7:38025721-38025935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):28, 79

               
               
               Conread position:592-812
               
               
               Cow position:chr7:3283262-3283474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:592-812
               
               
               Cow position:chr7:3311742-3311954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:592-819
               
               
               Cow position:chr7:45927259-45927043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):134, 31

               
               
               Conread position:592-820
               
               
               Cow position:chr7:25960362-25960589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):37, 53

               
               
               Conread position:592-827
               
               
               Cow position:chr7:20304-20539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):74, 32

               
               
               Conread position:592-831
               
               
               Cow position:chr7:37142466-37142239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):34, 62

               
               
               Conread position:592-835
               
               
               Cow position:chr7:8272558-8272801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):120, 31

               
               
               Conread position:592-840
               
               
               Cow position:chr7:21565656-21565421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):128, 15

               
               
               Conread position:592-848
               
               
               Cow position:chr7:21122360-21122108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):38, 97

               
               
               Conread position:592-853
               
               
               Cow position:chr7:6041875-6042128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):161, 31

               
               
               Conread position:592-853
               
               
               Cow position:chr7:47830385-47830130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):105, 32

               
               
               Conread position:592-875
               
               
               Cow position:chr7:3256455-3256167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:196
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):101, 31

               
               
               Conread position:592-875
               
               
               Cow position:chr7:32915009-32915293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):163, 5

               
               
               Conread position:592-898
               
               
               Cow position:chr7:43881976-43882280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:210
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):34, 104

               
               
               Conread position:592-899
               
               
               Cow position:chr7:1558634-1558943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):134, 103

               
               
               Conread position:592-922
               
               
               Cow position:chr7:44496662-44496346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):34, 56

               
               
               Conread position:592-928
               
               
               Cow position:chr7:4582830-4582503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:228
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:592-929
               
               
               Cow position:chr7:3336653-3336332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:234
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):104, 31

               
               
               Conread position:592-929
               
               
               Cow position:chr7:15755551-15755215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:236
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):110, 31

               
               
               Conread position:592-929
               
               
               Cow position:chr7:29302453-29302125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):33, 48

               
               
               Conread position:592-937
               
               
               Cow position:chr7:23568838-23568491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:244
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):112, 31

               
               
               Conread position:592-937
               
               
               Cow position:chr7:32093148-32093490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:231
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):177, 117

               
               
               Conread position:592-940
               
               
               Cow position:chr7:13067057-13067400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:243
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):34, 67

               
               
               Conread position:592-940
               
               
               Cow position:chr7:50066214-50065877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):118, 31

               
               
               Conread position:592-941
               
               
               Cow position:chr7:2579344-2578995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 137

               
               
               Conread position:592-941
               
               
               Cow position:chr7:17713574-17713221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):257, 31

               
               
               Conread position:592-941
               
               
               Cow position:chr7:18857086-18856747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):30, 52

               
               
               Conread position:592-941
               
               
               Cow position:chr7:23664195-23663856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):34, 116

               
               
               Conread position:592-941
               
               
               Cow position:chr7:25415297-25415638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):132, 69

               
               
               Conread position:592-941
               
               
               Cow position:chr7:27990781-27990437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):244, 33

               
               
               Conread position:592-941
               
               
               Cow position:chr7:48358904-48359237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):138, 105

               
               
               Conread position:592-941
               
               
               Cow position:chr7:63378288-63378639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:234
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):36, 93

               
               
               Conread position:592-945
               
               
               Cow position:chr7:32791596-32791935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):29, 109

               
               
               Conread position:592-945
               
               
               Cow position:chr7:33697854-33698198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):120, 32

               
               
               Conread position:592-948
               
               
               Cow position:chr7:14481959-14482314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):10, 110

               
               
               Conread position:592-948
               
               
               Cow position:chr7:59691971-59692318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):34, 66

               
               
               Conread position:592-949
               
               
               Cow position:chr7:5052660-5052317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:238
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):34, 53

               
               
               Conread position:592-949
               
               
               Cow position:chr7:9781829-9781472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 107

               
               
               Conread position:592-949
               
               
               Cow position:chr7:22357587-22357239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):34, 105

               
               
               Conread position:592-949
               
               
               Cow position:chr7:30156056-30155698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 114

               
               
               Conread position:592-949
               
               
               Cow position:chr7:36717563-36717216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:239
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):35, 53

               
               
               Conread position:592-949
               
               
               Cow position:chr7:43894726-43895084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:246
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):34, 74

               
               
               Conread position:592-950
               
               
               Cow position:chr7:39939636-39939988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:233
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):34, 81

               
               
               Conread position:592-950
               
               
               Cow position:chr7:64228998-64228640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 99

               
               
               Conread position:592-955
               
               
               Cow position:chr7:4452502-4452859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:254
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):104, 33

               
               
               Conread position:592-955
               
               
               Cow position:chr7:18544477-18544133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):347, 37

               
               
               Conread position:592-959
               
               
               Cow position:chr7:25263269-25263632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 138

               
               
               Conread position:592-959
               
               
               Cow position:chr7:39149839-39150212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):121, 324

               
               
               Conread position:592-960
               
               
               Cow position:chr7:9145582-9145201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:256
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):112, 278

               
               
               Conread position:593-738
               
               
               Cow position:chr7:7553363-7553217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):125, 102

               
               
               Conread position:593-752
               
               
               Cow position:chr7:24718632-24718476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):33, 95

               
               
               Conread position:593-765
               
               
               Cow position:chr7:58427977-58428147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):109, 51

               
               
               Conread position:593-786
               
               
               Cow position:chr7:40335938-40336129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):128, 79

               
               
               Conread position:593-840
               
               
               Cow position:chr7:40189454-40189693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):129, 33

               
               
               Conread position:593-848
               
               
               Cow position:chr7:19981948-19981695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):26, 110

               
               
               Conread position:593-867
               
               
               Cow position:chr7:9800253-9800525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):129, 30

               
               
               Conread position:593-871
               
               
               Cow position:chr7:38696747-38697016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:593-878
               
               
               Cow position:chr7:41745575-41745285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):35, 223

               
               
               Conread position:593-882
               
               
               Cow position:chr7:48406597-48406313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:209
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):129, 113

               
               
               Conread position:593-899
               
               
               Cow position:chr7:42636880-42637165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):294, 30

               
               
               Conread position:593-910
               
               
               Cow position:chr7:9146539-9146859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):33, 53

               
               
               Conread position:593-927
               
               
               Cow position:chr7:14005774-14006112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):33, 124

               
               
               Conread position:593-927
               
               
               Cow position:chr7:32316795-32317120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):34, 14

               
               
               Conread position:593-937
               
               
               Cow position:chr7:10044-10384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:231
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):107, 30

               
               
               Conread position:593-939
               
               
               Cow position:chr7:18508631-18508306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):118, 30

               
               
               Conread position:593-940
               
               
               Cow position:chr7:49751026-49751369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):129, 30

               
               
               Conread position:593-941
               
               
               Cow position:chr7:40263748-40263431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):130, 30

               
               
               Conread position:593-948
               
               
               Cow position:chr7:37697701-37698056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 53

               
               
               Conread position:593-948
               
               
               Cow position:chr7:40425417-40425061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 120

               
               
               Conread position:593-949
               
               
               Cow position:chr7:15616073-15616439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):26, 206

               
               
               Conread position:593-949
               
               
               Cow position:chr7:39103537-39103190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:226
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):27, 115

               
               
               Conread position:593-949
               
               
               Cow position:chr7:39169804-39170167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):34, 114

               
               
               Conread position:593-949
               
               
               Cow position:chr7:58967168-58967519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 78

               
               
               Conread position:593-949
               
               
               Cow position:chr7:63112877-63112528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:248
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):33, 9

               
               
               Conread position:593-951
               
               
               Cow position:chr7:249602-249252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:250
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):131, 69

               
               
               Conread position:593-951
               
               
               Cow position:chr7:40008717-40009079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 284

               
               
               Conread position:593-952
               
               
               Cow position:chr7:53579494-53579136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 93

               
               
               Conread position:593-955
               
               
               Cow position:chr7:13963098-13963464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:257
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):29, 191

               
               
               Conread position:593-955
               
               
               Cow position:chr7:40952962-40952594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:260
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):109, 30

               
               
               Conread position:593-959
               
               
               Cow position:chr7:24220569-24220910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 77

               
               
               Conread position:593-959
               
               
               Cow position:chr7:39161615-39161967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):35, 70

               
               
               Conread position:593-959
               
               
               Cow position:chr7:64573164-64572804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):30, 54

               
               
               Conread position:594-751
               
               
               Cow position:chr7:2896662-2896821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):25, 114

               
               
               Conread position:594-941
               
               
               Cow position:chr7:36665232-36665568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):265, 29

               
               
               Conread position:594-950
               
               
               Cow position:chr7:11783532-11783175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:249
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):30, 129

               
               
               Conread position:594-959
               
               
               Cow position:chr7:29280112-29279761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:253
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):161, 19

               
               
               Conread position:595-753
               
               
               Cow position:chr7:12212701-12212543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):120, 89

               
               
               Conread position:595-804
               
               
               Cow position:chr7:45592942-45593146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):127, 22

               
               
               Conread position:595-898
               
               
               Cow position:chr7:65315118-65315426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:210
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):14, 77

               
               
               Conread position:595-937
               
               
               Cow position:chr7:55688296-55687945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:244
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):73, 14

               
               
               Conread position:595-940
               
               
               Cow position:chr7:33393216-33393548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:236
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):28, 50

               
               
               Conread position:595-941
               
               
               Cow position:chr7:39145852-39145501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:234
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):28, 50

               
               
               Conread position:595-949
               
               
               Cow position:chr7:16667486-16667822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):69, 30

               
               
               Conread position:595-950
               
               
               Cow position:chr7:29300855-29300527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):128, 28

               
               
               Conread position:596-805
               
               
               Cow position:chr7:9074957-9075160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):126, 88

               
               
               Conread position:596-806
               
               
               Cow position:chr7:51638665-51638457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):94, 26

               
               
               Conread position:596-842
               
               
               Cow position:chr7:11869937-11869694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:179
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):106, 119

               
               
               Conread position:596-848
               
               
               Cow position:chr7:26631912-26631661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):127, 99

               
               
               Conread position:596-855
               
               
               Cow position:chr7:61823952-61823692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):114, 25

               
               
               Conread position:596-875
               
               
               Cow position:chr7:147314-147593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:194
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):113, 27

               
               
               Conread position:596-945
               
               
               Cow position:chr7:30276639-30276983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:237
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):127, 27

               
               
               Conread position:596-951
               
               
               Cow position:chr7:41293846-41293498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 56

               
               
               Conread position:596-951
               
               
               Cow position:chr7:46857057-46856717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:246
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:596-958
               
               
               Cow position:chr7:31171049-31170702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 27

               
               
               Conread position:596-959
               
               
               Cow position:chr7:19466351-19466003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 103

               
               
               Conread position:596-960
               
               
               Cow position:chr7:60547773-60547410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:259
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):5, 118

               
               
               Conread position:597-848
               
               
               Cow position:chr7:40303364-40303105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):23, 107

               
               
               Conread position:597-872
               
               
               Cow position:chr7:6154890-6155152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:597-874
               
               
               Cow position:chr7:1792558-1792268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):29, 83

               
               
               Conread position:597-948
               
               
               Cow position:chr7:27079530-27079874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:597-951
               
               
               Cow position:chr7:51910038-51910363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):10, 27

               
               
               Conread position:597-959
               
               
               Cow position:chr7:4892769-4893104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):125, 63

               
               
               Conread position:598-941
               
               
               Cow position:chr7:60483522-60483191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:236
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):124, 25

               
               
               Conread position:598-948
               
               
               Cow position:chr7:43333737-43334086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):25, 75

               
               
               Conread position:599-809
               
               
               Cow position:chr7:46105980-46105770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):153, 96

               
               
               Conread position:599-941
               
               
               Cow position:chr7:36996280-36996599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:601-910
               
               
               Cow position:chr7:39472610-39472301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):53, 22

               
               
               Conread position:601-949
               
               
               Cow position:chr7:57829132-57829478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):18, 44

               
               
               Conread position:602-736
               
               
               Cow position:chr7:68932215-68932347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):118, 22

               
               
               Conread position:602-949
               
               
               Cow position:chr7:67873094-67873445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 119

               
               
               Conread position:603-944
               
               
               Cow position:chr7:20219926-20219598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):219, 26

               
               
               Conread position:604-860
               
               
               Cow position:chr7:33989867-33990115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):11, 21

               
               
               Conread position:604-929
               
               
               Cow position:chr7:37568946-37569281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:604-937
               
               
               Cow position:chr7:52680752-52681088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):120, 110

               
               
               Conread position:604-945
               
               
               Cow position:chr7:58867529-58867879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:228
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):95, 232

               
               
               Conread position:604-948
               
               
               Cow position:chr7:15534162-15533835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):119, 19

               
               
               Conread position:604-959
               
               
               Cow position:chr7:10074926-10075285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:244
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):70, 42

               
               
               Conread position:604-959
               
               
               Cow position:chr7:39427763-39428117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):150, 91

               
               
               Conread position:606-797
               
               
               Cow position:chr7:51673666-51673479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:607-937
               
               
               Cow position:chr7:25860283-25859965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):12, 66

               
               
               Conread position:607-941
               
               
               Cow position:chr7:61778758-61779094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):94, 296

               
               
               Conread position:607-944
               
               
               Cow position:chr7:33514800-33515137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):90, 117

               
               
               Conread position:607-947
               
               
               Cow position:chr7:14450254-14450573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:242
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):252, 17

               
               
               Conread position:607-954
               
               
               Cow position:chr7:21009025-21008668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:250
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):116, 16

               
               
               Conread position:608-935
               
               
               Cow position:chr7:65623629-65623306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):323, 28

               
               
               Conread position:609-937
               
               
               Cow position:chr7:8658429-8658751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 14

               
               
               Conread position:610-930
               
               
               Cow position:chr7:40308600-40308287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 90

               
               
               Conread position:612-765
               
               
               Cow position:chr7:9430314-9430162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):7, 83

               
               
               Conread position:613-860
               
               
               Cow position:chr7:36774285-36774531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):109, 53

               
               
               Conread position:613-935
               
               
               Cow position:chr7:69132871-69133193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):91, 147

               
               
               Conread position:613-945
               
               
               Cow position:chr7:37435164-37435491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):117, 11

               
               
               Conread position:613-955
               
               
               Cow position:chr7:8110331-8109990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:229
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):247, 101

               
               
               Conread position:614-947
               
               
               Cow position:chr7:23456904-23456576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):109, 94

               
               
               Conread position:614-959
               
               
               Cow position:chr7:68857665-68857324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 21

               
               
               Conread position:615-950
               
               
               Cow position:chr7:39094004-39093673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 9

               
               
               Conread position:615-959
               
               
               Cow position:chr7:15354822-15354479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:215
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):216, 68

               
               
               Conread position:616-936
               
               
               Cow position:chr7:60732718-60732394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):92, 79

               
               
               Conread position:618-875
               
               
               Cow position:chr7:50857872-50858130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):67, 91

               
               
               Conread position:618-930
               
               
               Cow position:chr7:37777895-37777587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):169, 77

               
               
               Conread position:618-941
               
               
               Cow position:chr7:35300496-35300180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):169, 77

               
               
               Conread position:618-948
               
               
               Cow position:chr7:535781-535472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:226
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:618-949
               
               
               Cow position:chr7:1721042-1720716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):98, 43

               
               
               Conread position:618-959
               
               
               Cow position:chr7:54513486-54513146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:245
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):81, 97

               
               
               Conread position:619-948
               
               
               Cow position:chr7:29682523-29682200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 27

               
               
               Conread position:619-949
               
               
               Cow position:chr7:54054513-54054846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:236
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):111, 9

               
               
               Conread position:620-785
               
               
               Cow position:chr7:2290057-2289896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):5, 39

               
               
               Conread position:620-936
               
               
               Cow position:chr7:20411603-20411287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 65

               
               
               Conread position:621-875
               
               
               Cow position:chr7:24460885-24461129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:621-940
               
               
               Cow position:chr7:30017590-30017282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):100, 33

               
               
               Conread position:621-945
               
               
               Cow position:chr7:10884819-10885143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:226
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):92, 5

               
               
               Conread position:624-934
               
               
               Cow position:chr7:9161738-9161436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):143, 76

               
               
               Conread position:624-941
               
               
               Cow position:chr7:9433937-9434230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:628-842
               
               
               Cow position:chr7:6058058-6058273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):74, 42

               
               
               Conread position:628-950
               
               
               Cow position:chr7:27062710-27063025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):94, 66

               
               
               Conread position:629-933
               
               
               Cow position:chr7:428848-428554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):94, 81

               
               
               Conread position:630-941
               
               
               Cow position:chr7:36856479-36856776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:631-923
               
               
               Cow position:chr7:1269609-1269327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:192
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):218, 75

               
               
               Conread position:631-945
               
               
               Cow position:chr7:43940431-43940733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):162, 65

               
               
               Conread position:633-842
               
               
               Cow position:chr7:29121840-29122045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):41, 36

               
               
               Conread position:633-949
               
               
               Cow position:chr7:39131552-39131255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:633-951
               
               
               Cow position:chr7:40484260-40484569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:216
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):118, 64

               
               
               Conread position:633-951
               
               
               Cow position:chr7:56615601-56615925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):72, 314

               
               
               Conread position:634-951
               
               
               Cow position:chr7:168729-168407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:224
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):96, 80

               
               
               Conread position:634-951
               
               
               Cow position:chr7:65988927-65988601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):149, 72

               
               
               Conread position:634-954
               
               
               Cow position:chr7:33719973-33720289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):220, 76

               
               
               Conread position:634-958
               
               
               Cow position:chr7:41615049-41614721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):67, 196

               
               
               Conread position:636-941
               
               
               Cow position:chr7:41111942-41111636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):81, 70

               
               
               Conread position:638-854
               
               
               Cow position:chr7:37466452-37466670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):66, 87

               
               
               Conread position:639-951
               
               
               Cow position:chr7:44208895-44209206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):77, 66

               
               
               Conread position:640-960
               
               
               Cow position:chr7:146658-146968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):37, 23

               
               
               Conread position:643-939
               
               
               Cow position:chr7:7535482-7535774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):62, 202

               
               
               Conread position:643-959
               
               
               Cow position:chr7:21268068-21267752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:215
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):9, 73

               
               
               Conread position:649-949
               
               
               Cow position:chr7:12468816-12469102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):29, 16

               
               
               Conread position:650-880
               
               
               Cow position:chr7:41103447-41103674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):80, 38

               
               
               Conread position:650-904
               
               
               Cow position:chr7:56886554-56886308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):73, 52

               
               
               Conread position:650-927
               
               
               Cow position:chr7:11549620-11549895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):75, 56

               
               
               Conread position:650-933
               
               
               Cow position:chr7:39129650-39129368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):37, 7

               
               
               Conread position:650-938
               
               
               Cow position:chr7:62394964-62395248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):65, 52

               
               
               Conread position:650-941
               
               
               Cow position:chr7:38429756-38429476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):94, 59

               
               
               Conread position:650-943
               
               
               Cow position:chr7:32774216-32774495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):288, 39

               
               
               Conread position:650-958
               
               
               Cow position:chr7:3159770-3160055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:650-959
               
               
               Cow position:chr7:38361276-38360976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:210
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):80, 42

               
               
               Conread position:650-960
               
               
               Cow position:chr7:51644603-51644901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:203
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):62, 181

               
               
               Conread position:652-939
               
               
               Cow position:chr7:39635375-39635097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):78, 45

               
               
               Conread position:652-941
               
               
               Cow position:chr7:39838922-39838622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):70, 62

               
               
               Conread position:652-960
               
               
               Cow position:chr7:33913926-33914229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):78, 53

               
               
               Conread position:653-941
               
               
               Cow position:chr7:11077208-11077494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:194
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):60, 107

               
               
               Conread position:653-951
               
               
               Cow position:chr7:63121460-63121162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):48, 101

               
               
               Conread position:654-958
               
               
               Cow position:chr7:32693068-32692768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:201
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):76, 18

               
               
               Conread position:655-959
               
               
               Cow position:chr7:42335293-42335578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:224
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):99, 17

               
               
               Conread position:656-944
               
               
               Cow position:chr7:10081740-10081462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:658-916
               
               
               Cow position:chr7:35642620-35642367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):59, 39

               
               
               Conread position:659-937
               
               
               Cow position:chr7:29505077-29505349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):67, 47

               
               
               Conread position:662-941
               
               
               Cow position:chr7:62542625-62542906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):112, 248

               
               
               Conread position:663-941
               
               
               Cow position:chr7:8089129-8089403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):50, 122

               
               
               Conread position:663-948
               
               
               Cow position:chr7:39100057-39099766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):53, 214

               
               
               Conread position:663-951
               
               
               Cow position:chr7:54367470-54367747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):60, 8

               
               
               Conread position:664-949
               
               
               Cow position:chr7:25785806-25786090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):40, 30

               
               
               Conread position:665-869
               
               
               Cow position:chr7:5242062-5242263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:673-929
               
               
               Cow position:chr7:6822951-6823207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):39, 29

               
               
               Conread position:673-951
               
               
               Cow position:chr7:50166005-50166279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):39, 15

               
               
               Conread position:674-938
               
               
               Cow position:chr7:41347054-41346791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):56, 39

               
               
               Conread position:674-941
               
               
               Cow position:chr7:23464240-23464504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):56, 20

               
               
               Conread position:674-960
               
               
               Cow position:chr7:28441157-28441434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):56, 12

               
               
               Conread position:675-940
               
               
               Cow position:chr7:37498216-37497948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):49, 39

               
               
               Conread position:675-951
               
               
               Cow position:chr7:15548011-15548281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):37, 11

               
               
               Conread position:676-929
               
               
               Cow position:chr7:14316922-14317168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:676-949
               
               
               Cow position:chr7:25464547-25464818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):29, 20

               
               
               Conread position:676-959
               
               
               Cow position:chr7:9070442-9070712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):47, 29

               
               
               Conread position:677-937
               
               
               Cow position:chr7:23818871-23819129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):35, 45

               
               
               Conread position:678-894
               
               
               Cow position:chr7:49636234-49636014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):52, 31

               
               
               Conread position:678-894
               
               
               Cow position:chr7:49745439-49745659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):52, 31

               
               
               Conread position:678-957
               
               
               Cow position:chr7:39947263-39946992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):227, 40

               
               
               Conread position:679-950
               
               
               Cow position:chr7:23491612-23491875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):33, 99

               
               
               Conread position:679-952
               
               
               Cow position:chr7:55316214-55315953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):43, 26

               
               
               Conread position:680-896
               
               
               Cow position:chr7:19414466-19414252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):182, 26

               
               
               Conread position:687-937
               
               
               Cow position:chr7:9175467-9175714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):35, 27

               
               
               Conread position:690-958
               
               
               Cow position:chr7:53673799-53673531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):19, 33

               
               
               Conread position:693-930
               
               
               Cow position:chr7:3431368-3431133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):31, 9

               
               
               Conread position:693-937
               
               
               Cow position:chr7:6116369-6116130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):37, 21

               
               
               Conread position:693-959
               
               
               Cow position:chr7:53652977-53653254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:694-941
               
               
               Cow position:chr7:6469619-6469867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):29, 13

               
               
               Conread position:694-949
               
               
               Cow position:chr7:63300195-63300448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):5, 76

               
               
               Conread position:694-950
               
               
               Cow position:chr7:33370391-33370641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):30, 15

               
               
               Conread position:694-955
               
               
               Cow position:chr7:11487677-11487423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):18, 91

               
               
               Conread position:696-951
               
               
               Cow position:chr7:26909760-26909514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:697-941
               
               
               Cow position:chr7:23557599-23557357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):31, 9

               
               
               Conread position:701-949
               
               
               Cow position:chr7:53653758-53653519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):22, 145

               
               
               Conread position:702-945
               
               
               Cow position:chr7:10415129-10414896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):155, 0

               
               
               Conread position:702-958
               
               
               Cow position:chr7:9077805-9077551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):21, 12

               
               
               Conread position:703-872
               
               
               Cow position:chr7:63085754-63085924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:703-958
               
               
               Cow position:chr7:23677931-23678186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):29, 74

               
               
               Conread position:704-959
               
               
               Cow position:chr7:65615776-65616029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:708-941
               
               
               Cow position:chr7:38458386-38458626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):15, 6

               
               
               Conread position:708-959
               
               
               Cow position:chr7:58330819-58330564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):14, 146

               
               
               Conread position:709-941
               
               
               Cow position:chr7:6044125-6043896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):14, 6

               
               
               Conread position:709-941
               
               
               Cow position:chr7:26871980-26871749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):14, 137

               
               
               Conread position:709-955
               
               
               Cow position:chr7:8387402-8387157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):21, 6

               
               
               Conread position:710-941
               
               
               Cow position:chr7:11796890-11796662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):13, 150

               
               
               Conread position:710-941
               
               
               Cow position:chr7:54108850-54108627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):151, 11

               
               
               Conread position:710-959
               
               
               Cow position:chr7:9816010-9816261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):20, 98

               
               
               Conread position:711-941
               
               
               Cow position:chr7:17750833-17750600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):12, 166

               
               
               Conread position:711-945
               
               
               Cow position:chr7:43084890-43085123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):227, 62

               
               
               Conread position:714-951
               
               
               Cow position:chr7:8289378-8289608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):16, 62

               
               
               Conread position:714-951
               
               
               Cow position:chr7:35088673-35088913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:714-959
               
               
               Cow position:chr7:26791523-26791772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:715-949
               
               
               Cow position:chr7:24630857-24631092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):15, 110

               
               
               Conread position:715-951
               
               
               Cow position:chr7:47512287-47512512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):7, 42

               
               
               Conread position:716-941
               
               
               Cow position:chr7:12495101-12494880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:716-951
               
               
               Cow position:chr7:11995165-11994929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):155, 6

               
               
               Conread position:719-951
               
               
               Cow position:chr7:40305231-40305005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:721-939
               
               
               Cow position:chr7:31523569-31523785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):147, 0

               
               
               Conread position:721-941
               
               
               Cow position:chr7:4138732-4138520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:725-918
               
               
               Cow position:chr7:46882768-46882961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):42, 122

               
               
               Conread position:725-930
               
               
               Cow position:chr7:8303591-8303386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:725-959
               
               
               Cow position:chr7:18971363-18971128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):127, 220

               
               
               Conread position:726-951
               
               
               Cow position:chr7:17000754-17000980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:726-960
               
               
               Cow position:chr7:51685043-51685274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):179, 0

               
               
               Conread position:726-960
               
               
               Cow position:chr7:58800198-58800433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):211, 81

               
               
               Conread position:729-896
               
               
               Cow position:chr7:68540568-68540401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):35, 47

               
               
               Conread position:729-949
               
               
               Cow position:chr7:29474702-29474906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:729-959
               
               
               Cow position:chr7:32324233-32324455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):210, 119

               
               
               Conread position:731-949
               
               
               Cow position:chr7:43356198-43356415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):150, 118

               
               
               Conread position:733-949
               
               
               Cow position:chr7:38347812-38347597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:734-940
               
               
               Cow position:chr7:6821082-6821287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:734-949
               
               
               Cow position:chr7:8318608-8318384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:734-956
               
               
               Cow position:chr7:40414960-40414746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:737-959
               
               
               Cow position:chr7:46963779-46964001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:738-941
               
               
               Cow position:chr7:32549366-32549167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):60, 18

               
               
               Conread position:740-944
               
               
               Cow position:chr7:44574265-44574464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:740-955
               
               
               Cow position:chr7:63772092-63772306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:741-924
               
               
               Cow position:chr7:35754718-35754899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:744-960
               
               
               Cow position:chr7:12918530-12918322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):90, 25

               
               
               Conread position:745-940
               
               
               Cow position:chr7:11054599-11054794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):83, 138

               
               
               Conread position:745-941
               
               
               Cow position:chr7:23671800-23671994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:747-937
               
               
               Cow position:chr7:10384927-10385118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):28, 108

               
               
               Conread position:747-937
               
               
               Cow position:chr7:39022160-39021970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:747-941
               
               
               Cow position:chr7:43450591-43450784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):173, 0

               
               
               Conread position:747-949
               
               
               Cow position:chr7:32900631-32900834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):21, 29

               
               
               Conread position:747-950
               
               
               Cow position:chr7:10945397-10945600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:748-929
               
               
               Cow position:chr7:15650796-15650614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:748-935
               
               
               Cow position:chr7:50442843-50442660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:748-959
               
               
               Cow position:chr7:48508497-48508708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:748-959
               
               
               Cow position:chr7:61005948-61006159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:749-949
               
               
               Cow position:chr7:53996352-53996546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):155, 0

               
               
               Conread position:754-950
               
               
               Cow position:chr7:8293095-8292892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):40, 163

               
               
               Conread position:757-937
               
               
               Cow position:chr7:10438388-10438564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:757-945
               
               
               Cow position:chr7:10559922-10559737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):183, 119

               
               
               Conread position:757-959
               
               
               Cow position:chr7:9068540-9068337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):68, 184

               
               
               Conread position:757-959
               
               
               Cow position:chr7:25087307-25087500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:758-941
               
               
               Cow position:chr7:20469675-20469857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:764-944
               
               
               Cow position:chr7:53791523-53791350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:768-948
               
               
               Cow position:chr7:31074505-31074326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:770-949
               
               
               Cow position:chr7:28109653-28109830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):87, 53

               
               
               Conread position:771-937
               
               
               Cow position:chr7:53433691-53433859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):47, 64

               
               
               Conread position:772-950
               
               
               Cow position:chr7:17772244-17772065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:773-929
               
               
               Cow position:chr7:32920525-32920370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:773-941
               
               
               Cow position:chr7:10944865-10945034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:773-941
               
               
               Cow position:chr7:44942633-44942797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):127, 87

               
               
               Conread position:773-945
               
               
               Cow position:chr7:37651572-37651745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:773-948
               
               
               Cow position:chr7:67099409-67099584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:773-951
               
               
               Cow position:chr7:12330150-12329975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:773-951
               
               
               Cow position:chr7:26309593-26309415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:773-958
               
               
               Cow position:chr7:18958465-18958282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:773-958
               
               
               Cow position:chr7:35779818-35779997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):170, 84

               
               
               Conread position:773-960
               
               
               Cow position:chr7:13491960-13491779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:773-960
               
               
               Cow position:chr7:30011908-30012089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:774-927
               
               
               Cow position:chr7:4060342-4060499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):80, 63

               
               
               Conread position:774-929
               
               
               Cow position:chr7:8032520-8032671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):127, 81

               
               
               Conread position:774-929
               
               
               Cow position:chr7:40336313-40336467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:774-929
               
               
               Cow position:chr7:44993675-44993829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):57, 47

               
               
               Conread position:774-930
               
               
               Cow position:chr7:21228472-21228318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):121, 75

               
               
               Conread position:774-930
               
               
               Cow position:chr7:40310985-40310830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:774-936
               
               
               Cow position:chr7:58329825-58329668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:774-941
               
               
               Cow position:chr7:41122190-41122029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:774-941
               
               
               Cow position:chr7:42460743-42460908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:774-941
               
               
               Cow position:chr7:55499012-55498848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:774-948
               
               
               Cow position:chr7:34216286-34216450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:774-950
               
               
               Cow position:chr7:5914308-5914478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):60, 73

               
               
               Conread position:774-950
               
               
               Cow position:chr7:11784967-11784793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):168, 83

               
               
               Conread position:774-951
               
               
               Cow position:chr7:48616298-48616111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:774-956
               
               
               Cow position:chr7:27290422-27290240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:774-959
               
               
               Cow position:chr7:519448-519264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):71, 95

               
               
               Conread position:774-959
               
               
               Cow position:chr7:11511801-11511977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):51, 44

               
               
               Conread position:774-959
               
               
               Cow position:chr7:40688019-40688202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:775-931
               
               
               Cow position:chr7:11945961-11946111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:775-932
               
               
               Cow position:chr7:8234957-8235114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:775-932
               
               
               Cow position:chr7:32813521-32813678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:775-939
               
               
               Cow position:chr7:43457601-43457432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:775-944
               
               
               Cow position:chr7:31885671-31885839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:775-944
               
               
               Cow position:chr7:42943387-42943549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:775-945
               
               
               Cow position:chr7:7616853-7617023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):76, 37

               
               
               Conread position:775-947
               
               
               Cow position:chr7:8523702-8523535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:775-947
               
               
               Cow position:chr7:8809883-8810055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):97, 169

               
               
               Conread position:775-949
               
               
               Cow position:chr7:49068763-49068589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:775-951
               
               
               Cow position:chr7:53834513-53834337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:775-955
               
               
               Cow position:chr7:13606531-13606714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:775-955
               
               
               Cow position:chr7:49942053-49941877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):130, 45

               
               
               Conread position:775-955
               
               
               Cow position:chr7:53442662-53442478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):35, 135

               
               
               Conread position:775-958
               
               
               Cow position:chr7:63968116-63967925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:776-941
               
               
               Cow position:chr7:58615344-58615505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:777-948
               
               
               Cow position:chr7:12913912-12913741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:779-956
               
               
               Cow position:chr7:35793157-35793332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):47, 81

               
               
               Conread position:780-945
               
               
               Cow position:chr7:23609460-23609626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:780-945
               
               
               Cow position:chr7:53862595-53862752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:780-956
               
               
               Cow position:chr7:53221757-53221579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:780-960
               
               
               Cow position:chr7:47523300-47523472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:781-950
               
               
               Cow position:chr7:39514317-39514485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:781-950
               
               
               Cow position:chr7:39516433-39516265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:781-951
               
               
               Cow position:chr7:12484383-12484553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:782-928
               
               
               Cow position:chr7:28047655-28047801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:782-944
               
               
               Cow position:chr7:14191661-14191501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:782-951
               
               
               Cow position:chr7:40672108-40672277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):59, 72

               
               
               Conread position:782-955
               
               
               Cow position:chr7:64385027-64384854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):163, 33

               
               
               Conread position:782-959
               
               
               Cow position:chr7:35096940-35096762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):166, 0

               
               
               Conread position:782-959
               
               
               Cow position:chr7:38901692-38901514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):161, 70

               
               
               Conread position:782-960
               
               
               Cow position:chr7:8888377-8888555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-958
               
               
               Cow position:chr7:45070211-45070038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):69, 116

               
               
               Conread position:784-949
               
               
               Cow position:chr7:5343695-5343534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:784-951
               
               
               Cow position:chr7:5992376-5992543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):80, 26

               
               
               Conread position:784-951
               
               
               Cow position:chr7:23552877-23552714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:784-959
               
               
               Cow position:chr7:16574687-16574861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):57, 89

               
               
               Conread position:787-947
               
               
               Cow position:chr7:35925660-35925818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:787-948
               
               
               Cow position:chr7:10466649-10466493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:787-955
               
               
               Cow position:chr7:16285487-16285321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:788-941
               
               
               Cow position:chr7:19652342-19652197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:788-941
               
               
               Cow position:chr7:43077493-43077646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:789-951
               
               
               Cow position:chr7:32823965-32823803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:790-930
               
               
               Cow position:chr7:35651637-35651496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:790-940
               
               
               Cow position:chr7:40520518-40520369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:790-945
               
               
               Cow position:chr7:9128965-9128810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):151, 62

               
               
               Conread position:790-950
               
               
               Cow position:chr7:30290852-30290694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:790-950
               
               
               Cow position:chr7:52591910-52591749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):149, 0

               
               
               Conread position:790-951
               
               
               Cow position:chr7:11019372-11019216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):15, 73

               
               
               Conread position:790-951
               
               
               Cow position:chr7:21174906-21175074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:792-941
               
               
               Cow position:chr7:11151375-11151228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:794-959
               
               
               Cow position:chr7:9238912-9238747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:794-960
               
               
               Cow position:chr7:14497378-14497542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:796-941
               
               
               Cow position:chr7:40361750-40361894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:797-955
               
               
               Cow position:chr7:7462019-7461861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:800-948
               
               
               Cow position:chr7:9744842-9744694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:805-950
               
               
               Cow position:chr7:12342888-12342743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:108
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:811-941
               
               
               Cow position:chr7:9093666-9093537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:812-960
               
               
               Cow position:chr7:14496508-14496357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:817-960
               
               
               Cow position:chr7:47047225-47047088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:111-760
               
               
               Cow position:chr8:5515097-5515742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:650
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):528, 0

               
               
               Conread position:529-937
               
               
               Cow position:chr8:834208-834619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:273
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):32, 5

               
               
               Conread position:530-949
               
               
               Cow position:chr8:59642697-59642270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:282
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):62, 18

               
               
               Conread position:538-848
               
               
               Cow position:chr8:43027839-43027537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):178, 34

               
               
               Conread position:547-865
               
               
               Cow position:chr8:43168205-43167891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):40, 7

               
               
               Conread position:547-937
               
               
               Cow position:chr8:12779064-12778692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:262
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):38, 10

               
               
               Conread position:555-951
               
               
               Cow position:chr8:23030256-23030648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:274
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):167, 14

               
               
               Conread position:557-839
               
               
               Cow position:chr8:51694977-51694703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):65, 6

               
               
               Conread position:561-872
               
               
               Cow position:chr8:58875899-58876214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):7, 28

               
               
               Conread position:562-927
               
               
               Cow position:chr8:1999451-1999828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 7

               
               
               Conread position:562-949
               
               
               Cow position:chr8:18831567-18831965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 7

               
               
               Conread position:562-956
               
               
               Cow position:chr8:46952357-46952741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:270
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):13, 6

               
               
               Conread position:564-720
               
               
               Cow position:chr8:44882781-44882939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):12, 137

               
               
               Conread position:565-953
               
               
               Cow position:chr8:29150034-29149640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:265
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):13, 155

               
               
               Conread position:566-711
               
               
               Cow position:chr8:44437606-44437751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:566-753
               
               
               Cow position:chr8:14919123-14919309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):27, 133

               
               
               Conread position:566-846
               
               
               Cow position:chr8:669729-669447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):118, 137

               
               
               Conread position:566-867
               
               
               Cow position:chr8:20339123-20339414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):11, 110

               
               
               Conread position:566-916
               
               
               Cow position:chr8:18049440-18049780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):20, 93

               
               
               Conread position:566-916
               
               
               Cow position:chr8:29765093-29765453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:566-936
               
               
               Cow position:chr8:29030257-29029873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:265
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):103, 19

               
               
               Conread position:566-941
               
               
               Cow position:chr8:21826912-21826531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 243

               
               
               Conread position:566-941
               
               
               Cow position:chr8:22755859-22756254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:261
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):104, 58

               
               
               Conread position:566-941
               
               
               Cow position:chr8:38780550-38780931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:267
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):27, 41

               
               
               Conread position:566-951
               
               
               Cow position:chr8:11278279-11277885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:279
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):27, 160

               
               
               Conread position:566-951
               
               
               Cow position:chr8:47284226-47283847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:261
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):21, 92

               
               
               Conread position:566-954
               
               
               Cow position:chr8:8924508-8924119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 19

               
               
               Conread position:566-958
               
               
               Cow position:chr8:58183471-58183080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:262
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):27, 41

               
               
               Conread position:566-959
               
               
               Cow position:chr8:35563173-35563566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:264
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):140, 19

               
               
               Conread position:568-918
               
               
               Cow position:chr8:1666217-1665885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:233
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):119, 17

               
               
               Conread position:568-941
               
               
               Cow position:chr8:45878879-45879237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:255
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):7, 129

               
               
               Conread position:568-941
               
               
               Cow position:chr8:45925461-45925819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:256
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):7, 129

               
               
               Conread position:569-879
               
               
               Cow position:chr8:36823357-36823055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):50, 18

               
               
               Conread position:569-884
               
               
               Cow position:chr8:33586056-33586365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):54, 134

               
               
               Conread position:569-939
               
               
               Cow position:chr8:8190223-8189850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 55

               
               
               Conread position:571-928
               
               
               Cow position:chr8:15395014-15394661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 40

               
               
               Conread position:572-886
               
               
               Cow position:chr8:11078716-11079017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):152, 129

               
               
               Conread position:573-921
               
               
               Cow position:chr8:21206732-21207072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:248
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):124, 17

               
               
               Conread position:573-938
               
               
               Cow position:chr8:935554-935913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 123

               
               
               Conread position:573-941
               
               
               Cow position:chr8:55884819-55885182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 50

               
               
               Conread position:574-855
               
               
               Cow position:chr8:642715-642450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):18, 43

               
               
               Conread position:574-930
               
               
               Cow position:chr8:13454767-13454424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:251
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):52, 22

               
               
               Conread position:574-930
               
               
               Cow position:chr8:20091164-20091511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):156, 13

               
               
               Conread position:574-941
               
               
               Cow position:chr8:54302877-54303222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:252
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):234, 49

               
               
               Conread position:574-945
               
               
               Cow position:chr8:27608294-27608682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:256
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:574-951
               
               
               Cow position:chr8:37882188-37882585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:272
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):19, 138

               
               
               Conread position:574-959
               
               
               Cow position:chr8:1187763-1188140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 153

               
               
               Conread position:575-875
               
               
               Cow position:chr8:21077438-21077733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):23, 51

               
               
               Conread position:575-929
               
               
               Cow position:chr8:21212657-21212986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:249
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):233, 21

               
               
               Conread position:575-941
               
               
               Cow position:chr8:38711450-38711797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:257
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):12, 59

               
               
               Conread position:576-827
               
               
               Cow position:chr8:20683823-20684071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):56, 11

               
               
               Conread position:576-941
               
               
               Cow position:chr8:24371862-24371503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):98, 11

               
               
               Conread position:576-941
               
               
               Cow position:chr8:37310368-37310724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:230
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):192, 11

               
               
               Conread position:576-941
               
               
               Cow position:chr8:46964569-46964948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 90

               
               
               Conread position:576-942
               
               
               Cow position:chr8:32460953-32460594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:232
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):154, 11

               
               
               Conread position:576-949
               
               
               Cow position:chr8:53383248-53383613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:268
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):13, 51

               
               
               Conread position:576-959
               
               
               Cow position:chr8:48513153-48512798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:261
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:577-717
               
               
               Cow position:chr8:31253662-31253801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):15, 126

               
               
               Conread position:577-752
               
               
               Cow position:chr8:37147970-37148146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):15, 131

               
               
               Conread position:577-761
               
               
               Cow position:chr8:45690053-45689866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):15, 68

               
               
               Conread position:577-767
               
               
               Cow position:chr8:36398065-36397879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):15, 47

               
               
               Conread position:577-813
               
               
               Cow position:chr8:28294991-28294762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):15, 41

               
               
               Conread position:577-831
               
               
               Cow position:chr8:17103569-17103324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):15, 47

               
               
               Conread position:577-836
               
               
               Cow position:chr8:30893153-30892894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):15, 66

               
               
               Conread position:577-854
               
               
               Cow position:chr8:50937634-50937904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):15, 67

               
               
               Conread position:577-874
               
               
               Cow position:chr8:3891575-3891281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):45, 66

               
               
               Conread position:577-927
               
               
               Cow position:chr8:24872023-24871688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 147

               
               
               Conread position:577-929
               
               
               Cow position:chr8:2164052-2163723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:243
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):15, 111

               
               
               Conread position:577-937
               
               
               Cow position:chr8:58520141-58520491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):15, 52

               
               
               Conread position:577-941
               
               
               Cow position:chr8:53633380-53633029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:253
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):15, 267

               
               
               Conread position:577-948
               
               
               Cow position:chr8:15187105-15187467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):15, 94

               
               
               Conread position:577-956
               
               
               Cow position:chr8:20783414-20783037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 146

               
               
               Conread position:577-958
               
               
               Cow position:chr8:27730893-27731269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 58

               
               
               Conread position:577-959
               
               
               Cow position:chr8:35971701-35972076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 47

               
               
               Conread position:578-857
               
               
               Cow position:chr8:3704470-3704750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):26, 260

               
               
               Conread position:578-935
               
               
               Cow position:chr8:30244981-30244632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):28, 84

               
               
               Conread position:578-935
               
               
               Cow position:chr8:50311002-50310647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 129

               
               
               Conread position:578-949
               
               
               Cow position:chr8:34769353-34769716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:261
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):19, 35

               
               
               Conread position:579-941
               
               
               Cow position:chr8:38665380-38665749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:248
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):144, 22

               
               
               Conread position:580-866
               
               
               Cow position:chr8:50784581-50784871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):46, 5

               
               
               Conread position:581-719
               
               
               Cow position:chr8:39555836-39555973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):11, 45

               
               
               Conread position:581-751
               
               
               Cow position:chr8:5485022-5484846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:581-753
               
               
               Cow position:chr8:1834776-1834946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):11, 129

               
               
               Conread position:581-879
               
               
               Cow position:chr8:40888344-40888052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):11, 44

               
               
               Conread position:581-929
               
               
               Cow position:chr8:5934190-5933837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:239
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):41, 22

               
               
               Conread position:581-935
               
               
               Cow position:chr8:10456320-10456666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:238
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:581-935
               
               
               Cow position:chr8:23586101-23585757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:245
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):11, 190

               
               
               Conread position:581-941
               
               
               Cow position:chr8:10970686-10971045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:245
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:581-941
               
               
               Cow position:chr8:18730295-18730668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 129

               
               
               Conread position:581-941
               
               
               Cow position:chr8:26008735-26009094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 86

               
               
               Conread position:581-941
               
               
               Cow position:chr8:40280543-40280897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:581-945
               
               
               Cow position:chr8:54052164-54052511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:251
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):11, 44

               
               
               Conread position:581-948
               
               
               Cow position:chr8:24867887-24867529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:257
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:581-949
               
               
               Cow position:chr8:27138935-27138580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:255
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):11, 41

               
               
               Conread position:581-951
               
               
               Cow position:chr8:19284357-19284718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:253
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):6, 30

               
               
               Conread position:581-951
               
               
               Cow position:chr8:23018652-23018296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:258
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:581-956
               
               
               Cow position:chr8:1303760-1304132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:581-956
               
               
               Cow position:chr8:46480014-46479655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:252
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):22, 82

               
               
               Conread position:581-958
               
               
               Cow position:chr8:16060943-16061300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:262
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):11, 27

               
               
               Conread position:581-959
               
               
               Cow position:chr8:45687819-45687449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:259
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):11, 129

               
               
               Conread position:582-949
               
               
               Cow position:chr8:3579281-3578924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):44, 115

               
               
               Conread position:583-941
               
               
               Cow position:chr8:11964160-11964501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):141, 28

               
               
               Conread position:583-949
               
               
               Cow position:chr8:20563907-20563535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):38, 158

               
               
               Conread position:584-937
               
               
               Cow position:chr8:21858846-21858504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):184, 27

               
               
               Conread position:585-848
               
               
               Cow position:chr8:39630634-39630892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):137, 38

               
               
               Conread position:585-918
               
               
               Cow position:chr8:36249561-36249231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:240
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):40, 73

               
               
               Conread position:585-918
               
               
               Cow position:chr8:47328207-47328529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):38, 60

               
               
               Conread position:585-922
               
               
               Cow position:chr8:43858196-43857866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:234
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):34, 112

               
               
               Conread position:585-937
               
               
               Cow position:chr8:39807454-39807806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 33

               
               
               Conread position:585-940
               
               
               Cow position:chr8:20034049-20033708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:228
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):276, 38

               
               
               Conread position:585-941
               
               
               Cow position:chr8:35504376-35504011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:257
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):116, 39

               
               
               Conread position:585-944
               
               
               Cow position:chr8:6816810-6816461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:585-944
               
               
               Cow position:chr8:18377030-18376677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):169, 13

               
               
               Conread position:585-958
               
               
               Cow position:chr8:60746506-60746871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 84

               
               
               Conread position:585-959
               
               
               Cow position:chr8:2904554-2904181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):138, 11

               
               
               Conread position:586-843
               
               
               Cow position:chr8:29026775-29026522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):37, 123

               
               
               Conread position:586-851
               
               
               Cow position:chr8:53558746-53558486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):40, 7

               
               
               Conread position:586-950
               
               
               Cow position:chr8:61128845-61128482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:260
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):24, 129

               
               
               Conread position:586-955
               
               
               Cow position:chr8:28378895-28378542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 39

               
               
               Conread position:587-936
               
               
               Cow position:chr8:33640225-33640568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:229
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):134, 16

               
               
               Conread position:589-927
               
               
               Cow position:chr8:59766464-59766790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:590-930
               
               
               Cow position:chr8:19546650-19546992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:238
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):33, 108

               
               
               Conread position:591-704
               
               
               Cow position:chr8:53929717-53929604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:90
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:591-742
               
               
               Cow position:chr8:17669873-17669723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-742
               
               
               Cow position:chr8:34477985-34478134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-751
               
               
               Cow position:chr8:35932294-35932456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):35, 117

               
               
               Conread position:591-752
               
               
               Cow position:chr8:32295866-32295704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):28, 116

               
               
               Conread position:591-753
               
               
               Cow position:chr8:24364077-24363915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):35, 113

               
               
               Conread position:591-753
               
               
               Cow position:chr8:24832239-24832400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):106, 120

               
               
               Conread position:591-761
               
               
               Cow position:chr8:5450743-5450569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):30, 58

               
               
               Conread position:591-761
               
               
               Cow position:chr8:9517318-9517143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):14, 154

               
               
               Conread position:591-761
               
               
               Cow position:chr8:36648591-36648424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):35, 105

               
               
               Conread position:591-761
               
               
               Cow position:chr8:51480964-51480798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):131, 34

               
               
               Conread position:591-762
               
               
               Cow position:chr8:35966164-35965995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):131, 113

               
               
               Conread position:591-766
               
               
               Cow position:chr8:12303313-12303493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:591-766
               
               
               Cow position:chr8:55926068-55926238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):114, 32

               
               
               Conread position:591-767
               
               
               Cow position:chr8:10699595-10699426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):35, 82

               
               
               Conread position:591-770
               
               
               Cow position:chr8:11135392-11135221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):131, 97

               
               
               Conread position:591-798
               
               
               Cow position:chr8:21083427-21083221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):46, 117

               
               
               Conread position:591-807
               
               
               Cow position:chr8:41900775-41900565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):35, 106

               
               
               Conread position:591-809
               
               
               Cow position:chr8:10297869-10297656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-816
               
               
               Cow position:chr8:9917748-9917971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):163, 23

               
               
               Conread position:591-816
               
               
               Cow position:chr8:57208610-57208389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):219, 52

               
               
               Conread position:591-820
               
               
               Cow position:chr8:5225172-5224953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):110, 28

               
               
               Conread position:591-820
               
               
               Cow position:chr8:14947436-14947204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):28, 116

               
               
               Conread position:591-831
               
               
               Cow position:chr8:32988609-32988844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-831
               
               
               Cow position:chr8:49687354-49687115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):131, 124

               
               
               Conread position:591-838
               
               
               Cow position:chr8:57389153-57389393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-839
               
               
               Cow position:chr8:5979807-5980053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-840
               
               
               Cow position:chr8:6485067-6484819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):133, 32

               
               
               Conread position:591-842
               
               
               Cow position:chr8:10263297-10263051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):131, 33

               
               
               Conread position:591-842
               
               
               Cow position:chr8:28313856-28313608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-842
               
               
               Cow position:chr8:29625096-29624855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-842
               
               
               Cow position:chr8:37192235-37192478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-846
               
               
               Cow position:chr8:37122840-37123083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:591-846
               
               
               Cow position:chr8:45781795-45781554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:591-847
               
               
               Cow position:chr8:48955801-48956061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):18, 59

               
               
               Conread position:591-848
               
               
               Cow position:chr8:1472927-1473178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):107, 32

               
               
               Conread position:591-848
               
               
               Cow position:chr8:40143988-40143732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:188
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):37, 20

               
               
               Conread position:591-852
               
               
               Cow position:chr8:25591688-25591938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):131, 52

               
               
               Conread position:591-855
               
               
               Cow position:chr8:24390333-24390069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):177, 115

               
               
               Conread position:591-855
               
               
               Cow position:chr8:53429636-53429904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):30, 78

               
               
               Conread position:591-859
               
               
               Cow position:chr8:35990916-35991180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-860
               
               
               Cow position:chr8:9131058-9130796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):112, 12

               
               
               Conread position:591-860
               
               
               Cow position:chr8:13374413-13374677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):131, 31

               
               
               Conread position:591-865
               
               
               Cow position:chr8:4924434-4924703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):132, 27

               
               
               Conread position:591-866
               
               
               Cow position:chr8:580213-579943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):83, 78

               
               
               Conread position:591-866
               
               
               Cow position:chr8:32093744-32094011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-869
               
               
               Cow position:chr8:33974426-33974698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):106, 32

               
               
               Conread position:591-875
               
               
               Cow position:chr8:20836990-20837264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):131, 107

               
               
               Conread position:591-875
               
               
               Cow position:chr8:21382827-21382546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):131, 33

               
               
               Conread position:591-875
               
               
               Cow position:chr8:39174380-39174095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:201
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-875
               
               
               Cow position:chr8:47461734-47462006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):163, 114

               
               
               Conread position:591-875
               
               
               Cow position:chr8:50708918-50709199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-882
               
               
               Cow position:chr8:47665039-47664750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:214
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):114, 33

               
               
               Conread position:591-894
               
               
               Cow position:chr8:19011929-19011637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):131, 33

               
               
               Conread position:591-896
               
               
               Cow position:chr8:45447236-45446937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):110, 27

               
               
               Conread position:591-903
               
               
               Cow position:chr8:11606200-11606504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):263, 33

               
               
               Conread position:591-904
               
               
               Cow position:chr8:53338794-53338490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):113, 33

               
               
               Conread position:591-912
               
               
               Cow position:chr8:35580770-35580455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-927
               
               
               Cow position:chr8:41627254-41626917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:230
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):35, 108

               
               
               Conread position:591-929
               
               
               Cow position:chr8:6073949-6073622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:237
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):129, 32

               
               
               Conread position:591-929
               
               
               Cow position:chr8:43903631-43903971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):133, 59

               
               
               Conread position:591-930
               
               
               Cow position:chr8:8097401-8097066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 14

               
               
               Conread position:591-930
               
               
               Cow position:chr8:9641223-9641557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):35, 67

               
               
               Conread position:591-930
               
               
               Cow position:chr8:20150691-20150362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:229
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):32, 45

               
               
               Conread position:591-930
               
               
               Cow position:chr8:24471516-24471858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):131, 16

               
               
               Conread position:591-930
               
               
               Cow position:chr8:55360432-55360757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:591-933
               
               
               Cow position:chr8:36375643-36375320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:244
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):113, 35

               
               
               Conread position:591-937
               
               
               Cow position:chr8:3446233-3445891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:242
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):83, 33

               
               
               Conread position:591-937
               
               
               Cow position:chr8:12795677-12796031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:237
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):28, 126

               
               
               Conread position:591-937
               
               
               Cow position:chr8:37347595-37347243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 127

               
               
               Conread position:591-938
               
               
               Cow position:chr8:31297133-31297473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-939
               
               
               Cow position:chr8:38572408-38572062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 32

               
               
               Conread position:591-940
               
               
               Cow position:chr8:33406978-33406646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-940
               
               
               Cow position:chr8:54437148-54436801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):38, 60

               
               
               Conread position:591-941
               
               
               Cow position:chr8:586637-586976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 14

               
               
               Conread position:591-941
               
               
               Cow position:chr8:4500357-4500698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr8:20102906-20102553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:246
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):141, 77

               
               
               Conread position:591-941
               
               
               Cow position:chr8:24328981-24328637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):231, 55

               
               
               Conread position:591-941
               
               
               Cow position:chr8:32133140-32133474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:243
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):132, 11

               
               
               Conread position:591-941
               
               
               Cow position:chr8:39181903-39181564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):35, 101

               
               
               Conread position:591-941
               
               
               Cow position:chr8:43687408-43687767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 242

               
               
               Conread position:591-941
               
               
               Cow position:chr8:46235569-46235916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:250
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):281, 32

               
               
               Conread position:591-941
               
               
               Cow position:chr8:55716626-55716963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:248
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):119, 35

               
               
               Conread position:591-941
               
               
               Cow position:chr8:55897939-55897608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):139, 32

               
               
               Conread position:591-944
               
               
               Cow position:chr8:1297378-1297723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:252
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):139, 33

               
               
               Conread position:591-944
               
               
               Cow position:chr8:19642336-19642680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 104

               
               
               Conread position:591-945
               
               
               Cow position:chr8:1011846-1012176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):142, 32

               
               
               Conread position:591-947
               
               
               Cow position:chr8:25388008-25388371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):265, 32

               
               
               Conread position:591-948
               
               
               Cow position:chr8:17199569-17199213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 54

               
               
               Conread position:591-949
               
               
               Cow position:chr8:2774651-2775011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):231, 32

               
               
               Conread position:591-949
               
               
               Cow position:chr8:5893809-5894145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:252
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):135, 32

               
               
               Conread position:591-949
               
               
               Cow position:chr8:20926775-20926408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 123

               
               
               Conread position:591-949
               
               
               Cow position:chr8:39066078-39066447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):35, 59

               
               
               Conread position:591-949
               
               
               Cow position:chr8:42145908-42145548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 26

               
               
               Conread position:591-949
               
               
               Cow position:chr8:47342600-47342957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:249
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):35, 98

               
               
               Conread position:591-950
               
               
               Cow position:chr8:23179678-23179312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:259
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):141, 32

               
               
               Conread position:591-950
               
               
               Cow position:chr8:24498113-24498469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:240
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):41, 93

               
               
               Conread position:591-950
               
               
               Cow position:chr8:37391491-37391138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:259
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):110, 32

               
               
               Conread position:591-950
               
               
               Cow position:chr8:48528097-48527746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:256
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):108, 33

               
               
               Conread position:591-951
               
               
               Cow position:chr8:15426619-15426970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:252
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):285, 33

               
               
               Conread position:591-951
               
               
               Cow position:chr8:17180160-17179819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:259
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):131, 55

               
               
               Conread position:591-951
               
               
               Cow position:chr8:21220020-21220375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:240
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):36, 82

               
               
               Conread position:591-951
               
               
               Cow position:chr8:24513279-24512924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:244
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):131, 11

               
               
               Conread position:591-951
               
               
               Cow position:chr8:25349578-25349922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:249
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-951
               
               
               Cow position:chr8:32621126-32620759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 32

               
               
               Conread position:591-951
               
               
               Cow position:chr8:37292220-37291866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 33

               
               
               Conread position:591-952
               
               
               Cow position:chr8:8668334-8667964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 19

               
               
               Conread position:591-952
               
               
               Cow position:chr8:59250598-59250944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:249
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-955
               
               
               Cow position:chr8:6724470-6724127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):116, 16

               
               
               Conread position:591-955
               
               
               Cow position:chr8:32332623-32332247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 115

               
               
               Conread position:591-956
               
               
               Cow position:chr8:6233032-6232675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 33

               
               
               Conread position:591-956
               
               
               Cow position:chr8:10942869-10942516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:246
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):33, 57

               
               
               Conread position:591-956
               
               
               Cow position:chr8:26625740-26626094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:591-959
               
               
               Cow position:chr8:11612413-11612776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 34

               
               
               Conread position:591-959
               
               
               Cow position:chr8:16413944-16413581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):258, 104

               
               
               Conread position:591-959
               
               
               Cow position:chr8:23111199-23110820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:245
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):155, 20

               
               
               Conread position:591-959
               
               
               Cow position:chr8:37571839-37571474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 116

               
               
               Conread position:591-959
               
               
               Cow position:chr8:43112970-43112622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:251
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):139, 33

               
               
               Conread position:591-959
               
               
               Cow position:chr8:47136142-47135792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:248
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):140, 33

               
               
               Conread position:591-959
               
               
               Cow position:chr8:59131536-59131168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):32, 54

               
               
               Conread position:591-960
               
               
               Cow position:chr8:27661727-27662087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:242
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):74, 36

               
               
               Conread position:592-736
               
               
               Cow position:chr8:1327300-1327439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):130, 25

               
               
               Conread position:592-751
               
               
               Cow position:chr8:36465073-36465229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):130, 116

               
               
               Conread position:592-767
               
               
               Cow position:chr8:42607411-42607240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:592-854
               
               
               Cow position:chr8:21222064-21222318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):29, 57

               
               
               Conread position:592-860
               
               
               Cow position:chr8:4940443-4940187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):34, 44

               
               
               Conread position:592-861
               
               
               Cow position:chr8:15479563-15479293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):33, 131

               
               
               Conread position:592-867
               
               
               Cow position:chr8:16972661-16972388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:184
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):28, 118

               
               
               Conread position:592-876
               
               
               Cow position:chr8:1394095-1394376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):101, 63

               
               
               Conread position:592-916
               
               
               Cow position:chr8:59043235-59042911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):34, 105

               
               
               Conread position:592-925
               
               
               Cow position:chr8:15972619-15972293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:592-929
               
               
               Cow position:chr8:47550069-47549747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:220
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):34, 98

               
               
               Conread position:592-935
               
               
               Cow position:chr8:3015340-3015686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):115, 31

               
               
               Conread position:592-941
               
               
               Cow position:chr8:9942660-9942313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 106

               
               
               Conread position:592-941
               
               
               Cow position:chr8:30418912-30419256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):36, 75

               
               
               Conread position:592-941
               
               
               Cow position:chr8:52925850-52925522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:236
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):131, 31

               
               
               Conread position:592-945
               
               
               Cow position:chr8:1023831-1024174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 116

               
               
               Conread position:592-947
               
               
               Cow position:chr8:23136876-23136520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):132, 105

               
               
               Conread position:592-948
               
               
               Cow position:chr8:12058584-12058941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 98

               
               
               Conread position:592-948
               
               
               Cow position:chr8:20212642-20212281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:242
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):31, 128

               
               
               Conread position:592-948
               
               
               Cow position:chr8:47752048-47751693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:241
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):34, 105

               
               
               Conread position:592-949
               
               
               Cow position:chr8:1252820-1253184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):31, 23

               
               
               Conread position:592-949
               
               
               Cow position:chr8:16296888-16296547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):30, 108

               
               
               Conread position:592-949
               
               
               Cow position:chr8:31776054-31776413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:243
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):34, 119

               
               
               Conread position:592-949
               
               
               Cow position:chr8:35456976-35456621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 55

               
               
               Conread position:592-949
               
               
               Cow position:chr8:38356984-38356636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):27, 107

               
               
               Conread position:592-949
               
               
               Cow position:chr8:47890131-47890472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):154, 54

               
               
               Conread position:592-951
               
               
               Cow position:chr8:10337157-10336823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:250
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:592-951
               
               
               Cow position:chr8:45287416-45287064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:250
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):276, 31

               
               
               Conread position:592-954
               
               
               Cow position:chr8:9510022-9509672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:243
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):176, 32

               
               
               Conread position:592-955
               
               
               Cow position:chr8:8987076-8986701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:261
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):139, 31

               
               
               Conread position:592-959
               
               
               Cow position:chr8:3976089-3976459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:253
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):27, 122

               
               
               Conread position:592-959
               
               
               Cow position:chr8:18017384-18017747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:245
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):85, 78

               
               
               Conread position:593-765
               
               
               Cow position:chr8:28412752-28412578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):34, 125

               
               
               Conread position:593-766
               
               
               Cow position:chr8:59438412-59438242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):129, 31

               
               
               Conread position:593-767
               
               
               Cow position:chr8:21961116-21961286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):133, 100

               
               
               Conread position:593-831
               
               
               Cow position:chr8:554318-554082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):129, 30

               
               
               Conread position:593-873
               
               
               Cow position:chr8:18207266-18206999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):129, 31

               
               
               Conread position:593-879
               
               
               Cow position:chr8:38681750-38682029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):112, 30

               
               
               Conread position:593-929
               
               
               Cow position:chr8:676467-676114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:241
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):26, 52

               
               
               Conread position:593-929
               
               
               Cow position:chr8:57406633-57406966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):137, 28

               
               
               Conread position:593-930
               
               
               Cow position:chr8:40032945-40032604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):282, 32

               
               
               Conread position:593-935
               
               
               Cow position:chr8:30324183-30324521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):34, 42

               
               
               Conread position:593-937
               
               
               Cow position:chr8:19995863-19995525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):232, 30

               
               
               Conread position:593-939
               
               
               Cow position:chr8:42794446-42794105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:248
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):130, 30

               
               
               Conread position:593-941
               
               
               Cow position:chr8:948414-948738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:235
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):130, 30

               
               
               Conread position:593-941
               
               
               Cow position:chr8:22273728-22274073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 118

               
               
               Conread position:593-949
               
               
               Cow position:chr8:21224201-21223864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):33, 52

               
               
               Conread position:593-949
               
               
               Cow position:chr8:42762563-42762215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):348, 30

               
               
               Conread position:593-951
               
               
               Cow position:chr8:538048-537691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 69

               
               
               Conread position:593-951
               
               
               Cow position:chr8:1620860-1620502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 66

               
               
               Conread position:593-951
               
               
               Cow position:chr8:33125372-33125712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):133, 56

               
               
               Conread position:593-952
               
               
               Cow position:chr8:37334040-37334395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:250
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):133, 31

               
               
               Conread position:593-958
               
               
               Cow position:chr8:39592456-39592820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 52

               
               
               Conread position:593-959
               
               
               Cow position:chr8:18869758-18870111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:242
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):53, 38

               
               
               Conread position:593-959
               
               
               Cow position:chr8:43439478-43439833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:247
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):129, 32

               
               
               Conread position:593-960
               
               
               Cow position:chr8:38358297-38358647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):32, 53

               
               
               Conread position:594-753
               
               
               Cow position:chr8:56581336-56581182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):118, 30

               
               
               Conread position:594-896
               
               
               Cow position:chr8:9315777-9316071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):32, 71

               
               
               Conread position:594-916
               
               
               Cow position:chr8:16487440-16487110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:229
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):32, 114

               
               
               Conread position:594-941
               
               
               Cow position:chr8:41905747-41905410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:246
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):262, 13

               
               
               Conread position:594-941
               
               
               Cow position:chr8:41914655-41914318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:246
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):262, 13

               
               
               Conread position:594-948
               
               
               Cow position:chr8:48775685-48776037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:238
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):32, 106

               
               
               Conread position:594-949
               
               
               Cow position:chr8:21222505-21222849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:245
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):26, 103

               
               
               Conread position:594-950
               
               
               Cow position:chr8:61537972-61537630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):111, 29

               
               
               Conread position:594-960
               
               
               Cow position:chr8:57218671-57219021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):14, 70

               
               
               Conread position:595-827
               
               
               Cow position:chr8:1936716-1936946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:595-872
               
               
               Cow position:chr8:2814492-2814768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):58, 29

               
               
               Conread position:595-875
               
               
               Cow position:chr8:45127829-45127555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):130, 29

               
               
               Conread position:595-941
               
               
               Cow position:chr8:38893879-38894229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):113, 28

               
               
               Conread position:595-948
               
               
               Cow position:chr8:37167615-37167963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:245
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):38, 53

               
               
               Conread position:596-860
               
               
               Cow position:chr8:7149824-7149569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):25, 56

               
               
               Conread position:596-926
               
               
               Cow position:chr8:18081410-18081723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):51, 27

               
               
               Conread position:596-935
               
               
               Cow position:chr8:26651165-26651492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:233
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):116, 11

               
               
               Conread position:596-944
               
               
               Cow position:chr8:51661731-51661384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):24, 101

               
               
               Conread position:596-948
               
               
               Cow position:chr8:2897747-2897384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):122, 27

               
               
               Conread position:596-949
               
               
               Cow position:chr8:1114925-1114593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):25, 54

               
               
               Conread position:596-951
               
               
               Cow position:chr8:20107913-20107574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:596-959
               
               
               Cow position:chr8:8324003-8323637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 114

               
               
               Conread position:596-959
               
               
               Cow position:chr8:37636119-37635768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:596-960
               
               
               Cow position:chr8:37298349-37298709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:260
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):128, 50

               
               
               Conread position:597-842
               
               
               Cow position:chr8:37862450-37862685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:597-893
               
               
               Cow position:chr8:20306856-20307140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):183, 27

               
               
               Conread position:597-922
               
               
               Cow position:chr8:60126724-60127037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:221
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):125, 97

               
               
               Conread position:598-753
               
               
               Cow position:chr8:10802292-10802139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):111, 57

               
               
               Conread position:598-753
               
               
               Cow position:chr8:19975943-19975788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):124, 32

               
               
               Conread position:598-813
               
               
               Cow position:chr8:35211050-35210848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:599-844
               
               
               Cow position:chr8:20657496-20657246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):23, 11

               
               
               Conread position:599-862
               
               
               Cow position:chr8:13723284-13723540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:599-951
               
               
               Cow position:chr8:3673250-3673609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:248
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):27, 49

               
               
               Conread position:601-875
               
               
               Cow position:chr8:5866952-5867228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):104, 22

               
               
               Conread position:601-889
               
               
               Cow position:chr8:4649012-4648729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):119, 22

               
               
               Conread position:601-959
               
               
               Cow position:chr8:58058617-58058970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:241
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):119, 22

               
               
               Conread position:602-941
               
               
               Cow position:chr8:6193846-6194192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:602-951
               
               
               Cow position:chr8:34799549-34799914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:602-959
               
               
               Cow position:chr8:35827930-35827574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 45

               
               
               Conread position:603-941
               
               
               Cow position:chr8:28228125-28228449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):15, 60

               
               
               Conread position:604-941
               
               
               Cow position:chr8:17046883-17046549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:230
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):164, 103

               
               
               Conread position:604-954
               
               
               Cow position:chr8:38851977-38852317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:238
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):100, 20

               
               
               Conread position:604-959
               
               
               Cow position:chr8:28321853-28322200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:245
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):113, 32

               
               
               Conread position:604-959
               
               
               Cow position:chr8:44449718-44449377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:247
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):225, 19

               
               
               Conread position:605-820
               
               
               Cow position:chr8:299820-300036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):21, 42

               
               
               Conread position:605-878
               
               
               Cow position:chr8:20157889-20157610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:605-959
               
               
               Cow position:chr8:54031753-54032100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 172

               
               
               Conread position:607-743
               
               
               Cow position:chr8:55719447-55719311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):125, 99

               
               
               Conread position:607-930
               
               
               Cow position:chr8:5661947-5662269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):123, 84

               
               
               Conread position:607-936
               
               
               Cow position:chr8:54147546-54147874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:213
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):101, 16

               
               
               Conread position:607-940
               
               
               Cow position:chr8:58417581-58417888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:228
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):123, 16

               
               
               Conread position:607-945
               
               
               Cow position:chr8:19475204-19474866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:229
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):76, 17

               
               
               Conread position:608-820
               
               
               Cow position:chr8:43227855-43228065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:608-941
               
               
               Cow position:chr8:12213896-12214209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:610-939
               
               
               Cow position:chr8:17232479-17232143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):89, 102

               
               
               Conread position:610-941
               
               
               Cow position:chr8:6224550-6224232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):114, 13

               
               
               Conread position:611-929
               
               
               Cow position:chr8:37119961-37119640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):93, 38

               
               
               Conread position:611-949
               
               
               Cow position:chr8:19204559-19204225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 45

               
               
               Conread position:612-941
               
               
               Cow position:chr8:18728670-18728993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):16, 36

               
               
               Conread position:613-927
               
               
               Cow position:chr8:36768361-36768674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 89

               
               
               Conread position:613-951
               
               
               Cow position:chr8:15922379-15922043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):245, 93

               
               
               Conread position:613-959
               
               
               Cow position:chr8:53606631-53606291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:234
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:614-955
               
               
               Cow position:chr8:54177824-54177487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 10

               
               
               Conread position:615-894
               
               
               Cow position:chr8:9652566-9652830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):108, 10

               
               
               Conread position:616-956
               
               
               Cow position:chr8:9401814-9402152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:236
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):105, 8

               
               
               Conread position:617-807
               
               
               Cow position:chr8:30012348-30012155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):77, 167

               
               
               Conread position:618-855
               
               
               Cow position:chr8:3922823-3922589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):113, 87

               
               
               Conread position:618-955
               
               
               Cow position:chr8:61067183-61067508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:227
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):10, 55

               
               
               Conread position:619-767
               
               
               Cow position:chr8:32967680-32967827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:619-941
               
               
               Cow position:chr8:27955258-27954942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):111, 27

               
               
               Conread position:619-959
               
               
               Cow position:chr8:46874447-46874776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):105, 90

               
               
               Conread position:620-939
               
               
               Cow position:chr8:52657067-52657367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:620-958
               
               
               Cow position:chr8:31985159-31985484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:234
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):82, 29

               
               
               Conread position:621-941
               
               
               Cow position:chr8:41722287-41721981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):175, 49

               
               
               Conread position:623-875
               
               
               Cow position:chr8:49659027-49659274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:623-949
               
               
               Cow position:chr8:55901130-55900806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):72, 153

               
               
               Conread position:625-938
               
               
               Cow position:chr8:16144027-16144340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 81

               
               
               Conread position:625-941
               
               
               Cow position:chr8:50735723-50736043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):117, 38

               
               
               Conread position:626-886
               
               
               Cow position:chr8:22183612-22183874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):78, 128

               
               
               Conread position:627-941
               
               
               Cow position:chr8:51208674-51209002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):44, 61

               
               
               Conread position:628-874
               
               
               Cow position:chr8:17167468-17167714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):69, 44

               
               
               Conread position:628-875
               
               
               Cow position:chr8:40579510-40579266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):94, 74

               
               
               Conread position:628-951
               
               
               Cow position:chr8:6661508-6661185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):96, 91

               
               
               Conread position:628-958
               
               
               Cow position:chr8:20052052-20052379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):73, 87

               
               
               Conread position:629-842
               
               
               Cow position:chr8:55871799-55871582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):82, 66

               
               
               Conread position:629-942
               
               
               Cow position:chr8:49305841-49305537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:219
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:629-959
               
               
               Cow position:chr8:52197556-52197227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 68

               
               
               Conread position:630-941
               
               
               Cow position:chr8:53552582-53552879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):92, 76

               
               
               Conread position:630-949
               
               
               Cow position:chr8:4203950-4203633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):85, 66

               
               
               Conread position:631-929
               
               
               Cow position:chr8:61567470-61567174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):43, 38

               
               
               Conread position:631-949
               
               
               Cow position:chr8:18290205-18289900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):203, 5

               
               
               Conread position:631-957
               
               
               Cow position:chr8:46082072-46082391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):91, 84

               
               
               Conread position:633-958
               
               
               Cow position:chr8:47412828-47413151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):90, 60

               
               
               Conread position:636-849
               
               
               Cow position:chr8:4552842-4552627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:636-951
               
               
               Cow position:chr8:6910250-6909940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):174, 73

               
               
               Conread position:636-959
               
               
               Cow position:chr8:2524713-2525036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):9, 80

               
               
               Conread position:637-951
               
               
               Cow position:chr8:43942646-43942951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):137, 27

               
               
               Conread position:640-935
               
               
               Cow position:chr8:4524998-4525280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):128, 62

               
               
               Conread position:640-945
               
               
               Cow position:chr8:25271741-25272046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):24, 17

               
               
               Conread position:641-935
               
               
               Cow position:chr8:6756251-6755955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):89, 48

               
               
               Conread position:642-941
               
               
               Cow position:chr8:43940984-43940687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):41, 28

               
               
               Conread position:643-944
               
               
               Cow position:chr8:39487720-39487425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):16, 64

               
               
               Conread position:650-929
               
               
               Cow position:chr8:16505419-16505686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):80, 16

               
               
               Conread position:650-935
               
               
               Cow position:chr8:24125902-24126173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:650-941
               
               
               Cow position:chr8:4992483-4992760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:650-941
               
               
               Cow position:chr8:26305940-26305653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):80, 11

               
               
               Conread position:650-941
               
               
               Cow position:chr8:61157313-61157021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):47, 131

               
               
               Conread position:650-959
               
               
               Cow position:chr8:45859732-45860042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):80, 63

               
               
               Conread position:651-929
               
               
               Cow position:chr8:36493376-36493653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):79, 38

               
               
               Conread position:651-937
               
               
               Cow position:chr8:55974891-55974609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):79, 63

               
               
               Conread position:651-944
               
               
               Cow position:chr8:32130161-32130443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):73, 35

               
               
               Conread position:651-948
               
               
               Cow position:chr8:20851349-20851051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):67, 43

               
               
               Conread position:652-948
               
               
               Cow position:chr8:6616866-6616563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):72, 54

               
               
               Conread position:653-933
               
               
               Cow position:chr8:21911565-21911845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:196
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):211, 56

               
               
               Conread position:653-941
               
               
               Cow position:chr8:47169869-47170155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):70, 44

               
               
               Conread position:654-939
               
               
               Cow position:chr8:8916027-8915747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):79, 42

               
               
               Conread position:654-941
               
               
               Cow position:chr8:29958330-29958608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):59, 119

               
               
               Conread position:654-959
               
               
               Cow position:chr8:26284927-26284626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):69, 47

               
               
               Conread position:655-949
               
               
               Cow position:chr8:7204822-7204535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):179, 41

               
               
               Conread position:655-951
               
               
               Cow position:chr8:51523940-51524227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:656-929
               
               
               Cow position:chr8:41219257-41219527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):67, 14

               
               
               Conread position:657-940
               
               
               Cow position:chr8:53746647-53746363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:657-951
               
               
               Cow position:chr8:522500-522204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):29, 67

               
               
               Conread position:658-941
               
               
               Cow position:chr8:3662623-3662333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):72, 46

               
               
               Conread position:658-941
               
               
               Cow position:chr8:26315563-26315294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):16, 10

               
               
               Conread position:660-949
               
               
               Cow position:chr8:4334105-4333821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):155, 55

               
               
               Conread position:662-958
               
               
               Cow position:chr8:24237014-24237320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):197, 45

               
               
               Conread position:664-944
               
               
               Cow position:chr8:4656193-4655929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:664-951
               
               
               Cow position:chr8:32278412-32278126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):53, 38

               
               
               Conread position:664-951
               
               
               Cow position:chr8:38478873-38479161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):94, 7

               
               
               Conread position:665-951
               
               
               Cow position:chr8:21600386-21600673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):65, 42

               
               
               Conread position:666-941
               
               
               Cow position:chr8:61845617-61845339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):38, 189

               
               
               Conread position:670-959
               
               
               Cow position:chr8:36299948-36299661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):52, 17

               
               
               Conread position:673-890
               
               
               Cow position:chr8:25751925-25751711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):190, 95

               
               
               Conread position:673-896
               
               
               Cow position:chr8:43163757-43163544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):49, 35

               
               
               Conread position:673-945
               
               
               Cow position:chr8:55454617-55454876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:673-949
               
               
               Cow position:chr8:55247646-55247377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):33, 45

               
               
               Conread position:673-950
               
               
               Cow position:chr8:5437708-5437980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):39, 24

               
               
               Conread position:673-951
               
               
               Cow position:chr8:55089904-55089636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:188
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):58, 37

               
               
               Conread position:673-955
               
               
               Cow position:chr8:52772877-52773160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):30, 42

               
               
               Conread position:673-959
               
               
               Cow position:chr8:36531656-36531374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):173, 29

               
               
               Conread position:673-960
               
               
               Cow position:chr8:6665604-6665311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:208
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):57, 21

               
               
               Conread position:676-923
               
               
               Cow position:chr8:17247178-17247410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:676-941
               
               
               Cow position:chr8:46743365-46743105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):29, 39

               
               
               Conread position:676-944
               
               
               Cow position:chr8:9168867-9168600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):54, 32

               
               
               Conread position:677-941
               
               
               Cow position:chr8:5468142-5467873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):46, 37

               
               
               Conread position:678-941
               
               
               Cow position:chr8:55070664-55070923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):16, 193

               
               
               Conread position:679-937
               
               
               Cow position:chr8:11863904-11864157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:679-941
               
               
               Cow position:chr8:23608949-23608676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:679-945
               
               
               Cow position:chr8:22593115-22592851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):84, 37

               
               
               Conread position:679-949
               
               
               Cow position:chr8:4593425-4593156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):51, 31

               
               
               Conread position:680-930
               
               
               Cow position:chr8:51581195-51580944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):51, 17

               
               
               Conread position:680-959
               
               
               Cow position:chr8:10262159-10261884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):36, 22

               
               
               Conread position:681-941
               
               
               Cow position:chr8:9655530-9655783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):49, 29

               
               
               Conread position:681-941
               
               
               Cow position:chr8:18091277-18091535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):49, 16

               
               
               Conread position:681-948
               
               
               Cow position:chr8:37559085-37559340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:184
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):34, 21

               
               
               Conread position:683-928
               
               
               Cow position:chr8:38816350-38816591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):22, 133

               
               
               Conread position:684-929
               
               
               Cow position:chr8:58598596-58598835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):39, 18

               
               
               Conread position:684-944
               
               
               Cow position:chr8:24870851-24870593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):46, 19

               
               
               Conread position:696-927
               
               
               Cow position:chr8:34060193-34059966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):27, 12

               
               
               Conread position:697-950
               
               
               Cow position:chr8:39590204-39590456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:702-945
               
               
               Cow position:chr8:52308470-52308226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):15, 152

               
               
               Conread position:702-959
               
               
               Cow position:chr8:5937390-5937651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):28, 157

               
               
               Conread position:704-951
               
               
               Cow position:chr8:3887308-3887550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):26, 11

               
               
               Conread position:705-951
               
               
               Cow position:chr8:51501308-51501067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):43, 32

               
               
               Conread position:706-937
               
               
               Cow position:chr8:1526760-1526535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):24, 53

               
               
               Conread position:706-948
               
               
               Cow position:chr8:2615602-2615353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:706-949
               
               
               Cow position:chr8:5962626-5962868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):15, 63

               
               
               Conread position:706-951
               
               
               Cow position:chr8:43104317-43104064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):24, 63

               
               
               Conread position:706-958
               
               
               Cow position:chr8:3423533-3423274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:707-945
               
               
               Cow position:chr8:28209960-28210200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):23, 70

               
               
               Conread position:707-959
               
               
               Cow position:chr8:20327872-20327625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):23, 105

               
               
               Conread position:708-937
               
               
               Cow position:chr8:54061877-54062103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):22, 157

               
               
               Conread position:708-955
               
               
               Cow position:chr8:38860541-38860795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):22, 6

               
               
               Conread position:709-867
               
               
               Cow position:chr8:36489849-36490008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:709-935
               
               
               Cow position:chr8:20409668-20409892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):33, 113

               
               
               Conread position:709-949
               
               
               Cow position:chr8:25554851-25554609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):7, 230

               
               
               Conread position:709-949
               
               
               Cow position:chr8:34820337-34820097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:710-941
               
               
               Cow position:chr8:20582707-20582475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:710-944
               
               
               Cow position:chr8:11124582-11124353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):8, 64

               
               
               Conread position:710-944
               
               
               Cow position:chr8:38643534-38643295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):20, 142

               
               
               Conread position:710-949
               
               
               Cow position:chr8:48675025-48675263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:710-954
               
               
               Cow position:chr8:58393543-58393779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):13, 148

               
               
               Conread position:710-959
               
               
               Cow position:chr8:1832720-1832473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):16, 12

               
               
               Conread position:711-936
               
               
               Cow position:chr8:47410064-47410287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):12, 147

               
               
               Conread position:711-941
               
               
               Cow position:chr8:42112842-42112606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):134, 203

               
               
               Conread position:711-944
               
               
               Cow position:chr8:52870164-52870394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):13, 72

               
               
               Conread position:711-951
               
               
               Cow position:chr8:24905449-24905701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):139, 10

               
               
               Conread position:711-958
               
               
               Cow position:chr8:20105891-20105640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):19, 41

               
               
               Conread position:712-951
               
               
               Cow position:chr8:32457771-32458008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):20, 58

               
               
               Conread position:713-948
               
               
               Cow position:chr8:24309228-24309465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):163, 0

               
               
               Conread position:715-941
               
               
               Cow position:chr8:4959154-4958928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):16, 137

               
               
               Conread position:715-950
               
               
               Cow position:chr8:3914578-3914817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):126, 162

               
               
               Conread position:717-951
               
               
               Cow position:chr8:5477863-5477633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):6, 145

               
               
               Conread position:718-944
               
               
               Cow position:chr8:48174020-48173790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):12, 161

               
               
               Conread position:719-959
               
               
               Cow position:chr8:41888373-41888600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:724-949
               
               
               Cow position:chr8:24406645-24406424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:725-932
               
               
               Cow position:chr8:37636574-37636369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:725-949
               
               
               Cow position:chr8:56850179-56849957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):191, 0

               
               
               Conread position:726-949
               
               
               Cow position:chr8:35497682-35497468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:726-949
               
               
               Cow position:chr8:39352877-39352659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:729-941
               
               
               Cow position:chr8:53587316-53587113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):167, 40

               
               
               Conread position:729-942
               
               
               Cow position:chr8:35817118-35816905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):208, 117

               
               
               Conread position:730-949
               
               
               Cow position:chr8:48645465-48645684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:731-941
               
               
               Cow position:chr8:43101464-43101253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):12, 95

               
               
               Conread position:731-959
               
               
               Cow position:chr8:5173282-5173055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):215, 129

               
               
               Conread position:731-959
               
               
               Cow position:chr8:32303931-32304165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):123, 216

               
               
               Conread position:733-955
               
               
               Cow position:chr8:2376016-2375793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):217, 0

               
               
               Conread position:734-941
               
               
               Cow position:chr8:34402301-34402506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):184, 0

               
               
               Conread position:737-941
               
               
               Cow position:chr8:13478995-13479198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):55, 170

               
               
               Conread position:738-941
               
               
               Cow position:chr8:11216845-11216648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:738-945
               
               
               Cow position:chr8:19378261-19378470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:738-948
               
               
               Cow position:chr8:24419267-24419069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:739-957
               
               
               Cow position:chr8:49542894-49543110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):195, 11

               
               
               Conread position:740-951
               
               
               Cow position:chr8:8773066-8772854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):111, 64

               
               
               Conread position:740-959
               
               
               Cow position:chr8:55725756-55725539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:741-936
               
               
               Cow position:chr8:3423018-3423211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:741-937
               
               
               Cow position:chr8:25640088-25639899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:741-944
               
               
               Cow position:chr8:5484560-5484357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:741-948
               
               
               Cow position:chr8:8112750-8112956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):33, 122

               
               
               Conread position:742-951
               
               
               Cow position:chr8:47057650-47057443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:742-959
               
               
               Cow position:chr8:6795396-6795613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):102, 25

               
               
               Conread position:743-949
               
               
               Cow position:chr8:31308616-31308822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:743-949
               
               
               Cow position:chr8:38863146-38863352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):66, 108

               
               
               Conread position:743-950
               
               
               Cow position:chr8:3056855-3057062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:745-951
               
               
               Cow position:chr8:61848710-61848507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:747-951
               
               
               Cow position:chr8:42378878-42378676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:747-958
               
               
               Cow position:chr8:34035696-34035899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):153, 60

               
               
               Conread position:747-959
               
               
               Cow position:chr8:5665675-5665458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:747-960
               
               
               Cow position:chr8:39350769-39350558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):185, 0

               
               
               Conread position:748-944
               
               
               Cow position:chr8:37148330-37148526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:748-951
               
               
               Cow position:chr8:8509713-8509914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:748-959
               
               
               Cow position:chr8:51443681-51443467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:752-941
               
               
               Cow position:chr8:35452598-35452783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:756-941
               
               
               Cow position:chr8:5672126-5671945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):109, 38

               
               
               Conread position:757-951
               
               
               Cow position:chr8:10293406-10293218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:773-948
               
               
               Cow position:chr8:20897390-20897565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:773-949
               
               
               Cow position:chr8:26961219-26961395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):61, 52

               
               
               Conread position:773-950
               
               
               Cow position:chr8:690235-690060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):159, 79

               
               
               Conread position:773-950
               
               
               Cow position:chr8:36034923-36034748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):100, 77

               
               
               Conread position:773-951
               
               
               Cow position:chr8:27033816-27033990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):166, 127

               
               
               Conread position:773-955
               
               
               Cow position:chr8:38996700-38996881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):168, 106

               
               
               Conread position:773-959
               
               
               Cow position:chr8:34092808-34093000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):78, 157

               
               
               Conread position:774-929
               
               
               Cow position:chr8:8283254-8283099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:774-937
               
               
               Cow position:chr8:13922684-13922845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:774-941
               
               
               Cow position:chr8:3762194-3762360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:774-941
               
               
               Cow position:chr8:55063980-55064145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):57, 52

               
               
               Conread position:774-948
               
               
               Cow position:chr8:10832388-10832212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:774-949
               
               
               Cow position:chr8:24363592-24363419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:774-949
               
               
               Cow position:chr8:36054208-36054384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:774-949
               
               
               Cow position:chr8:38993779-38993948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):117, 31

               
               
               Conread position:774-949
               
               
               Cow position:chr8:48182548-48182722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:774-950
               
               
               Cow position:chr8:19784904-19785078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):60, 95

               
               
               Conread position:774-958
               
               
               Cow position:chr8:22600048-22599862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):82, 59

               
               
               Conread position:774-958
               
               
               Cow position:chr8:37437306-37437125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:774-959
               
               
               Cow position:chr8:39968236-39968055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:774-960
               
               
               Cow position:chr8:38811348-38811529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:775-930
               
               
               Cow position:chr8:53624780-53624624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:775-941
               
               
               Cow position:chr8:38790002-38790167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):65, 15

               
               
               Conread position:775-944
               
               
               Cow position:chr8:28383040-28382871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:775-949
               
               
               Cow position:chr8:54239612-54239782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:775-950
               
               
               Cow position:chr8:39556176-39556350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:775-951
               
               
               Cow position:chr8:1651637-1651814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):167, 0

               
               
               Conread position:775-951
               
               
               Cow position:chr8:5385636-5385462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:775-951
               
               
               Cow position:chr8:8767091-8766913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:775-951
               
               
               Cow position:chr8:26881781-26881607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:775-959
               
               
               Cow position:chr8:30868685-30868501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:775-960
               
               
               Cow position:chr8:34556211-34556395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):28, 98

               
               
               Conread position:775-960
               
               
               Cow position:chr8:57388844-57389024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:776-918
               
               
               Cow position:chr8:38658416-38658274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:776-937
               
               
               Cow position:chr8:6675242-6675400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:776-951
               
               
               Cow position:chr8:24488526-24488701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):78, 156

               
               
               Conread position:776-955
               
               
               Cow position:chr8:31767986-31767814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:776-957
               
               
               Cow position:chr8:22428530-22428347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):54, 42

               
               
               Conread position:776-960
               
               
               Cow position:chr8:54306402-54306584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):170, 92

               
               
               Conread position:777-938
               
               
               Cow position:chr8:45167584-45167423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:777-950
               
               
               Cow position:chr8:50281925-50282100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):157, 0

               
               
               Conread position:780-941
               
               
               Cow position:chr8:5730084-5730240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:780-945
               
               
               Cow position:chr8:50403910-50403744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):24, 58

               
               
               Conread position:780-946
               
               
               Cow position:chr8:11003748-11003581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:780-951
               
               
               Cow position:chr8:31902634-31902467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):159, 72

               
               
               Conread position:782-940
               
               
               Cow position:chr8:1367723-1367882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):59, 129

               
               
               Conread position:782-940
               
               
               Cow position:chr8:16216113-16216268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:782-941
               
               
               Cow position:chr8:6477901-6478055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:782-941
               
               
               Cow position:chr8:38461647-38461492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:782-941
               
               
               Cow position:chr8:40161157-40160997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):59, 13

               
               
               Conread position:782-944
               
               
               Cow position:chr8:9814947-9815106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):66, 124

               
               
               Conread position:782-945
               
               
               Cow position:chr8:43052023-43052188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:782-951
               
               
               Cow position:chr8:57943127-57942959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):71, 85

               
               
               Conread position:782-955
               
               
               Cow position:chr8:19223605-19223437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):56, 67

               
               
               Conread position:782-959
               
               
               Cow position:chr8:6184185-6184009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):150, 0

               
               
               Conread position:782-959
               
               
               Cow position:chr8:22223597-22223421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):165, 99

               
               
               Conread position:782-959
               
               
               Cow position:chr8:40743166-40742987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):78, 60

               
               
               Conread position:783-958
               
               
               Cow position:chr8:39358056-39357877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):69, 51

               
               
               Conread position:784-949
               
               
               Cow position:chr8:12105603-12105767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:784-959
               
               
               Cow position:chr8:38800219-38800390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):156, 39

               
               
               Conread position:787-951
               
               
               Cow position:chr8:61739614-61739457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:787-959
               
               
               Cow position:chr8:51511798-51511629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:788-960
               
               
               Cow position:chr8:9582625-9582799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):52, 66

               
               
               Conread position:789-941
               
               
               Cow position:chr8:19985426-19985578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):51, 59

               
               
               Conread position:789-951
               
               
               Cow position:chr8:20112492-20112655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):60, 110

               
               
               Conread position:789-951
               
               
               Cow position:chr8:48210914-48210753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):51, 64

               
               
               Conread position:789-960
               
               
               Cow position:chr8:60200039-60199868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):151, 63

               
               
               Conread position:790-950
               
               
               Cow position:chr8:2968638-2968798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:791-941
               
               
               Cow position:chr8:4897016-4897166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:791-951
               
               
               Cow position:chr8:28509390-28509236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:791-959
               
               
               Cow position:chr8:50024902-50024734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):157, 115

               
               
               Conread position:796-959
               
               
               Cow position:chr8:59092817-59092655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:797-941
               
               
               Cow position:chr8:41466358-41466211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:797-948
               
               
               Cow position:chr8:25083243-25083393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):146, 0

               
               
               Conread position:801-930
               
               
               Cow position:chr8:36912463-36912334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:97
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:802-941
               
               
               Cow position:chr8:10194138-10194277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:807-955
               
               
               Cow position:chr8:11555371-11555230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):136, 50

               
               
               Conread position:811-949
               
               
               Cow position:chr8:42758637-42758499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:828-951
               
               
               Cow position:chr8:45352151-45352026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:98
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:831-940
               
               
               Cow position:chr8:23370219-23370111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:88
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:834-951
               
               
               Cow position:chr8:37683675-37683792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:91
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-208
               
               
               Cow position:chr9:50656846-50656632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:537-842
               
               
               Cow position:chr9:49292908-49293217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):24, 96

               
               
               Conread position:542-936
               
               
               Cow position:chr9:25805054-25804663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:263
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):23, 31

               
               
               Conread position:550-862
               
               
               Cow position:chr9:63746025-63745721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):25, 12

               
               
               Conread position:554-952
               
               
               Cow position:chr9:17395947-17396348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:258
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):170, 41

               
               
               Conread position:555-951
               
               
               Cow position:chr9:6397574-6397966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 33

               
               
               Conread position:566-713
               
               
               Cow position:chr9:8546520-8546374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):11, 56

               
               
               Conread position:566-743
               
               
               Cow position:chr9:11198141-11198318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):11, 72

               
               
               Conread position:566-796
               
               
               Cow position:chr9:9416205-9416423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):60, 19

               
               
               Conread position:566-853
               
               
               Cow position:chr9:38961236-38961513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):46, 19

               
               
               Conread position:566-855
               
               
               Cow position:chr9:33697221-33696949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):156, 5

               
               
               Conread position:566-875
               
               
               Cow position:chr9:1973144-1972843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):28, 143

               
               
               Conread position:566-896
               
               
               Cow position:chr9:62357329-62357659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:213
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):26, 58

               
               
               Conread position:566-948
               
               
               Cow position:chr9:5433837-5433468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 287

               
               
               Conread position:566-959
               
               
               Cow position:chr9:44710027-44709646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 127

               
               
               Conread position:568-820
               
               
               Cow position:chr9:34468387-34468630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):24, 59

               
               
               Conread position:569-753
               
               
               Cow position:chr9:40604145-40603960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):18, 141

               
               
               Conread position:569-948
               
               
               Cow position:chr9:10118470-10118843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:244
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):255, 18

               
               
               Conread position:569-951
               
               
               Cow position:chr9:52131216-52130832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 16

               
               
               Conread position:569-959
               
               
               Cow position:chr9:12910208-12910588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):265, 26

               
               
               Conread position:574-853
               
               
               Cow position:chr9:60027389-60027112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):19, 50

               
               
               Conread position:574-927
               
               
               Cow position:chr9:38846155-38846497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):33, 42

               
               
               Conread position:574-933
               
               
               Cow position:chr9:3070225-3070579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):17, 125

               
               
               Conread position:574-940
               
               
               Cow position:chr9:54716423-54716784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:261
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):13, 34

               
               
               Conread position:574-955
               
               
               Cow position:chr9:30138320-30137938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:264
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):20, 51

               
               
               Conread position:574-957
               
               
               Cow position:chr9:5501049-5500677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:263
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):18, 50

               
               
               Conread position:575-855
               
               
               Cow position:chr9:26434870-26435144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):147, 79

               
               
               Conread position:576-798
               
               
               Cow position:chr9:38344080-38343860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):16, 48

               
               
               Conread position:576-807
               
               
               Cow position:chr9:1916473-1916248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:576-915
               
               
               Cow position:chr9:57896931-57897247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:221
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:576-929
               
               
               Cow position:chr9:29184943-29185298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 49

               
               
               Conread position:576-941
               
               
               Cow position:chr9:13670818-13670466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:256
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):128, 13

               
               
               Conread position:577-720
               
               
               Cow position:chr9:42998278-42998422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:577-751
               
               
               Cow position:chr9:14358351-14358180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):15, 119

               
               
               Conread position:577-792
               
               
               Cow position:chr9:3387880-3387665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):15, 140

               
               
               Conread position:577-795
               
               
               Cow position:chr9:35533762-35533980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):31, 131

               
               
               Conread position:577-848
               
               
               Cow position:chr9:49417176-49416907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):15, 125

               
               
               Conread position:577-855
               
               
               Cow position:chr9:64050367-64050648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):10, 114

               
               
               Conread position:577-867
               
               
               Cow position:chr9:28354707-28354418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 48

               
               
               Conread position:577-903
               
               
               Cow position:chr9:41513812-41513505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):50, 74

               
               
               Conread position:577-930
               
               
               Cow position:chr9:18252734-18253079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:238
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):29, 74

               
               
               Conread position:577-935
               
               
               Cow position:chr9:28726534-28726893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 8

               
               
               Conread position:577-935
               
               
               Cow position:chr9:32307048-32307398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:239
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):15, 48

               
               
               Conread position:577-935
               
               
               Cow position:chr9:42445793-42446150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 11

               
               
               Conread position:577-935
               
               
               Cow position:chr9:52578348-52578703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):11, 47

               
               
               Conread position:577-937
               
               
               Cow position:chr9:35167361-35167003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:256
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):15, 108

               
               
               Conread position:577-937
               
               
               Cow position:chr9:42498018-42497662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:253
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):11, 227

               
               
               Conread position:577-941
               
               
               Cow position:chr9:55256362-55256719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):15, 47

               
               
               Conread position:577-945
               
               
               Cow position:chr9:7409971-7409603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:264
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):15, 284

               
               
               Conread position:577-948
               
               
               Cow position:chr9:15215492-15215866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 142

               
               
               Conread position:577-949
               
               
               Cow position:chr9:33598170-33597795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:259
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):15, 122

               
               
               Conread position:577-950
               
               
               Cow position:chr9:44822113-44822501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:265
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):15, 97

               
               
               Conread position:577-959
               
               
               Cow position:chr9:18381048-18380678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:260
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):15, 67

               
               
               Conread position:577-959
               
               
               Cow position:chr9:28773310-28772955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:255
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):15, 47

               
               
               Conread position:578-763
               
               
               Cow position:chr9:29034843-29035031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):23, 31

               
               
               Conread position:578-860
               
               
               Cow position:chr9:5246041-5245761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):118, 7

               
               
               Conread position:578-877
               
               
               Cow position:chr9:31078897-31079182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):14, 27

               
               
               Conread position:578-951
               
               
               Cow position:chr9:11123296-11123659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 47

               
               
               Conread position:579-875
               
               
               Cow position:chr9:10308822-10309105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):95, 91

               
               
               Conread position:579-925
               
               
               Cow position:chr9:29006748-29006405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:244
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):13, 27

               
               
               Conread position:581-756
               
               
               Cow position:chr9:18002764-18002942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):11, 128

               
               
               Conread position:581-761
               
               
               Cow position:chr9:5532134-5531951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):11, 89

               
               
               Conread position:581-763
               
               
               Cow position:chr9:1712293-1712469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:581-831
               
               
               Cow position:chr9:8534500-8534753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):11, 95

               
               
               Conread position:581-848
               
               
               Cow position:chr9:55889992-55889735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):7, 68

               
               
               Conread position:581-859
               
               
               Cow position:chr9:45756541-45756273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):132, 41

               
               
               Conread position:581-866
               
               
               Cow position:chr9:55074945-55075225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):11, 130

               
               
               Conread position:581-874
               
               
               Cow position:chr9:7363210-7362922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):7, 83

               
               
               Conread position:581-875
               
               
               Cow position:chr9:31638456-31638764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):11, 126

               
               
               Conread position:581-875
               
               
               Cow position:chr9:33093139-33092851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):11, 89

               
               
               Conread position:581-875
               
               
               Cow position:chr9:36445808-36445509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):11, 50

               
               
               Conread position:581-930
               
               
               Cow position:chr9:9753204-9753561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:247
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):11, 119

               
               
               Conread position:581-940
               
               
               Cow position:chr9:41728440-41728091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 35

               
               
               Conread position:581-951
               
               
               Cow position:chr9:34286985-34286616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:581-951
               
               
               Cow position:chr9:54681687-54681341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:254
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):152, 26

               
               
               Conread position:582-941
               
               
               Cow position:chr9:1938312-1937933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:249
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):140, 43

               
               
               Conread position:584-957
               
               
               Cow position:chr9:19034522-19034164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:263
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):13, 111

               
               
               Conread position:585-699
               
               
               Cow position:chr9:42585444-42585564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:97
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:585-860
               
               
               Cow position:chr9:27029524-27029797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:196
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):37, 60

               
               
               Conread position:585-892
               
               
               Cow position:chr9:824140-823838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:217
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):40, 86

               
               
               Conread position:585-900
               
               
               Cow position:chr9:28948032-28947732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):233, 39

               
               
               Conread position:585-904
               
               
               Cow position:chr9:17740768-17741074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:585-922
               
               
               Cow position:chr9:23388498-23388831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):138, 38

               
               
               Conread position:585-936
               
               
               Cow position:chr9:6933894-6934246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 57

               
               
               Conread position:585-937
               
               
               Cow position:chr9:4267804-4268169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:261
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):138, 38

               
               
               Conread position:585-941
               
               
               Cow position:chr9:19555554-19555219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:249
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):24, 39

               
               
               Conread position:585-944
               
               
               Cow position:chr9:20942430-20942792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:249
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):112, 15

               
               
               Conread position:585-944
               
               
               Cow position:chr9:58447943-58448299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:245
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):145, 86

               
               
               Conread position:585-951
               
               
               Cow position:chr9:647955-647590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:253
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):38, 61

               
               
               Conread position:585-951
               
               
               Cow position:chr9:8723972-8723611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:250
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):54, 11

               
               
               Conread position:585-953
               
               
               Cow position:chr9:51620616-51620263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 29

               
               
               Conread position:586-753
               
               
               Cow position:chr9:4323979-4324142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:586-813
               
               
               Cow position:chr9:17928938-17928712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):115, 37

               
               
               Conread position:586-955
               
               
               Cow position:chr9:35128673-35128291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:250
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):119, 12

               
               
               Conread position:588-903
               
               
               Cow position:chr9:44833787-44834097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):28, 109

               
               
               Conread position:589-820
               
               
               Cow position:chr9:24873009-24872784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):7, 36

               
               
               Conread position:589-941
               
               
               Cow position:chr9:32019155-32019497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:249
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):31, 153

               
               
               Conread position:590-755
               
               
               Cow position:chr9:34000445-34000607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):29, 83

               
               
               Conread position:590-788
               
               
               Cow position:chr9:41853617-41853412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:590-950
               
               
               Cow position:chr9:25557140-25556800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:254
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):116, 33

               
               
               Conread position:591-704
               
               
               Cow position:chr9:32812518-32812405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):105, 33

               
               
               Conread position:591-706
               
               
               Cow position:chr9:41995884-41995768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:591-713
               
               
               Cow position:chr9:38875402-38875523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:591-736
               
               
               Cow position:chr9:32711104-32710961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):16, 116

               
               
               Conread position:591-742
               
               
               Cow position:chr9:1997312-1997163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):79, 16

               
               
               Conread position:591-752
               
               
               Cow position:chr9:10092212-10092378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):30, 105

               
               
               Conread position:591-752
               
               
               Cow position:chr9:25657683-25657525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):86, 79

               
               
               Conread position:591-752
               
               
               Cow position:chr9:58133852-58134004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:591-753
               
               
               Cow position:chr9:23027972-23027819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:591-759
               
               
               Cow position:chr9:8868967-8869134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):34, 65

               
               
               Conread position:591-760
               
               
               Cow position:chr9:30749411-30749581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):35, 120

               
               
               Conread position:591-786
               
               
               Cow position:chr9:50702942-50703129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):35, 77

               
               
               Conread position:591-792
               
               
               Cow position:chr9:1952095-1952294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-796
               
               
               Cow position:chr9:6225278-6225482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):31, 116

               
               
               Conread position:591-797
               
               
               Cow position:chr9:36827304-36827106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:591-803
               
               
               Cow position:chr9:4861562-4861349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):52, 32

               
               
               Conread position:591-805
               
               
               Cow position:chr9:35850073-35849867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:591-808
               
               
               Cow position:chr9:1950090-1949877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):131, 11

               
               
               Conread position:591-809
               
               
               Cow position:chr9:41789457-41789243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):131, 33

               
               
               Conread position:591-812
               
               
               Cow position:chr9:35203054-35202835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):106, 123

               
               
               Conread position:591-819
               
               
               Cow position:chr9:5509895-5509673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):131, 34

               
               
               Conread position:591-820
               
               
               Cow position:chr9:35904572-35904797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):131, 33

               
               
               Conread position:591-842
               
               
               Cow position:chr9:6879940-6879705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:591-842
               
               
               Cow position:chr9:19493289-19493540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:191
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):83, 32

               
               
               Conread position:591-842
               
               
               Cow position:chr9:46316612-46316855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:591-843
               
               
               Cow position:chr9:41679919-41679672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):133, 33

               
               
               Conread position:591-843
               
               
               Cow position:chr9:44914914-44915172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):111, 93

               
               
               Conread position:591-846
               
               
               Cow position:chr9:50076232-50075986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):131, 105

               
               
               Conread position:591-848
               
               
               Cow position:chr9:55321811-55321557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):111, 33

               
               
               Conread position:591-852
               
               
               Cow position:chr9:32371587-32371835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):134, 32

               
               
               Conread position:591-854
               
               
               Cow position:chr9:5763460-5763716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-855
               
               
               Cow position:chr9:43443970-43443717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):224, 54

               
               
               Conread position:591-855
               
               
               Cow position:chr9:43871153-43870888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:188
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:591-855
               
               
               Cow position:chr9:55084123-55084388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):33, 41

               
               
               Conread position:591-860
               
               
               Cow position:chr9:61997425-61997695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):130, 92

               
               
               Conread position:591-866
               
               
               Cow position:chr9:14796599-14796868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):35, 48

               
               
               Conread position:591-870
               
               
               Cow position:chr9:50139459-50139183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):28, 42

               
               
               Conread position:591-872
               
               
               Cow position:chr9:17411006-17411297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):44, 126

               
               
               Conread position:591-872
               
               
               Cow position:chr9:62668426-62668146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):29, 65

               
               
               Conread position:591-874
               
               
               Cow position:chr9:9461481-9461760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):111, 124

               
               
               Conread position:591-874
               
               
               Cow position:chr9:37678061-37677788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):30, 53

               
               
               Conread position:591-874
               
               
               Cow position:chr9:54528685-54528407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):131, 21

               
               
               Conread position:591-874
               
               
               Cow position:chr9:62442464-62442184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):177, 21

               
               
               Conread position:591-875
               
               
               Cow position:chr9:1520560-1520846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):40, 118

               
               
               Conread position:591-875
               
               
               Cow position:chr9:8563011-8562715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):108, 32

               
               
               Conread position:591-875
               
               
               Cow position:chr9:9654138-9654414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-875
               
               
               Cow position:chr9:11319460-11319743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:204
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):133, 33

               
               
               Conread position:591-875
               
               
               Cow position:chr9:17518315-17518594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):29, 94

               
               
               Conread position:591-875
               
               
               Cow position:chr9:18216930-18217206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):139, 35

               
               
               Conread position:591-875
               
               
               Cow position:chr9:21888343-21888063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):28, 113

               
               
               Conread position:591-875
               
               
               Cow position:chr9:44467179-44467449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):198, 33

               
               
               Conread position:591-875
               
               
               Cow position:chr9:50080872-50081147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:591-875
               
               
               Cow position:chr9:50543250-50543534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:591-876
               
               
               Cow position:chr9:7634447-7634167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):131, 33

               
               
               Conread position:591-876
               
               
               Cow position:chr9:38614786-38615070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):35, 65

               
               
               Conread position:591-896
               
               
               Cow position:chr9:48106944-48107236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:210
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):132, 70

               
               
               Conread position:591-916
               
               
               Cow position:chr9:33119712-33120036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 32

               
               
               Conread position:591-927
               
               
               Cow position:chr9:55287724-55288045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:591-927
               
               
               Cow position:chr9:56773253-56772905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):174, 32

               
               
               Conread position:591-929
               
               
               Cow position:chr9:9815589-9815255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 91

               
               
               Conread position:591-929
               
               
               Cow position:chr9:10010978-10010654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 113

               
               
               Conread position:591-933
               
               
               Cow position:chr9:34957881-34958214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 32

               
               
               Conread position:591-935
               
               
               Cow position:chr9:12225808-12226149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 5

               
               
               Conread position:591-935
               
               
               Cow position:chr9:30124094-30123766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:243
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-935
               
               
               Cow position:chr9:33218778-33219121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:249
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):118, 32

               
               
               Conread position:591-936
               
               
               Cow position:chr9:8901050-8901394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 16

               
               
               Conread position:591-937
               
               
               Cow position:chr9:6192289-6192623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:242
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):195, 32

               
               
               Conread position:591-937
               
               
               Cow position:chr9:26086237-26085891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):38, 80

               
               
               Conread position:591-937
               
               
               Cow position:chr9:26403959-26403629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:241
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):105, 118

               
               
               Conread position:591-937
               
               
               Cow position:chr9:34689429-34689771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):131, 10

               
               
               Conread position:591-937
               
               
               Cow position:chr9:36490718-36491070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:239
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):115, 32

               
               
               Conread position:591-937
               
               
               Cow position:chr9:48628201-48627857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:245
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):139, 32

               
               
               Conread position:591-937
               
               
               Cow position:chr9:49764829-49764479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:244
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):176, 33

               
               
               Conread position:591-937
               
               
               Cow position:chr9:55118253-55117916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):127, 33

               
               
               Conread position:591-937
               
               
               Cow position:chr9:56065722-56065400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):134, 46

               
               
               Conread position:591-941
               
               
               Cow position:chr9:1751508-1751159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 37

               
               
               Conread position:591-941
               
               
               Cow position:chr9:4340996-4341326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:244
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-941
               
               
               Cow position:chr9:5327428-5327092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):139, 9

               
               
               Conread position:591-941
               
               
               Cow position:chr9:6340522-6340856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:230
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):35, 54

               
               
               Conread position:591-941
               
               
               Cow position:chr9:7866239-7865901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):36, 101

               
               
               Conread position:591-941
               
               
               Cow position:chr9:9443423-9443772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):65, 121

               
               
               Conread position:591-941
               
               
               Cow position:chr9:24887372-24887035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:591-941
               
               
               Cow position:chr9:26440626-26440984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):35, 239

               
               
               Conread position:591-941
               
               
               Cow position:chr9:45141431-45141766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 20

               
               
               Conread position:591-941
               
               
               Cow position:chr9:52484743-52485084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):35, 83

               
               
               Conread position:591-944
               
               
               Cow position:chr9:8547989-8547636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:239
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):48, 105

               
               
               Conread position:591-945
               
               
               Cow position:chr9:1729499-1729861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:252
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):34, 59

               
               
               Conread position:591-945
               
               
               Cow position:chr9:53138957-53139309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:242
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):35, 107

               
               
               Conread position:591-946
               
               
               Cow position:chr9:33940781-33940422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:244
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):33, 117

               
               
               Conread position:591-948
               
               
               Cow position:chr9:14974756-14975108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:252
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):35, 16

               
               
               Conread position:591-949
               
               
               Cow position:chr9:9552261-9551910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):131, 31

               
               
               Conread position:591-949
               
               
               Cow position:chr9:11168904-11168567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:252
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):131, 113

               
               
               Conread position:591-949
               
               
               Cow position:chr9:22638277-22637921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:246
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):35, 69

               
               
               Conread position:591-949
               
               
               Cow position:chr9:43623430-43623087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):35, 54

               
               
               Conread position:591-949
               
               
               Cow position:chr9:52407343-52406992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 133

               
               
               Conread position:591-950
               
               
               Cow position:chr9:10144302-10144661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:248
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):23, 29

               
               
               Conread position:591-950
               
               
               Cow position:chr9:16300392-16300752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:253
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):94, 64

               
               
               Conread position:591-951
               
               
               Cow position:chr9:8920172-8919825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):108, 182

               
               
               Conread position:591-951
               
               
               Cow position:chr9:9403002-9403351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:252
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):198, 32

               
               
               Conread position:591-951
               
               
               Cow position:chr9:21459984-21460334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:252
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):122, 32

               
               
               Conread position:591-951
               
               
               Cow position:chr9:58614663-58614317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):20, 119

               
               
               Conread position:591-951
               
               
               Cow position:chr9:61544822-61544483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:256
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):129, 18

               
               
               Conread position:591-952
               
               
               Cow position:chr9:56032155-56032498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:247
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:591-954
               
               
               Cow position:chr9:20406808-20406471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:250
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):348, 70

               
               
               Conread position:591-955
               
               
               Cow position:chr9:20900948-20901302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):25, 103

               
               
               Conread position:591-957
               
               
               Cow position:chr9:47869177-47868839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:245
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):126, 33

               
               
               Conread position:591-958
               
               
               Cow position:chr9:6338972-6338606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):35, 54

               
               
               Conread position:591-958
               
               
               Cow position:chr9:13994360-13993975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:256
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):35, 373

               
               
               Conread position:591-958
               
               
               Cow position:chr9:15805751-15806112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 45

               
               
               Conread position:591-959
               
               
               Cow position:chr9:6840181-6839800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 39

               
               
               Conread position:591-959
               
               
               Cow position:chr9:9723710-9724065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:255
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):54, 34

               
               
               Conread position:591-959
               
               
               Cow position:chr9:43048452-43048804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):28, 106

               
               
               Conread position:591-960
               
               
               Cow position:chr9:8998530-8998165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 33

               
               
               Conread position:591-960
               
               
               Cow position:chr9:26057266-26057619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:261
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):28, 121

               
               
               Conread position:591-960
               
               
               Cow position:chr9:34901942-34902289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:246
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):131, 31

               
               
               Conread position:591-960
               
               
               Cow position:chr9:40215417-40215058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 114

               
               
               Conread position:591-960
               
               
               Cow position:chr9:53762871-53762506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 32

               
               
               Conread position:592-766
               
               
               Cow position:chr9:31270952-31270782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):131, 31

               
               
               Conread position:592-773
               
               
               Cow position:chr9:54997854-54998034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):75, 116

               
               
               Conread position:592-812
               
               
               Cow position:chr9:9823333-9823550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:592-832
               
               
               Cow position:chr9:5209753-5209516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:592-867
               
               
               Cow position:chr9:3738049-3738323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):113, 31

               
               
               Conread position:592-867
               
               
               Cow position:chr9:60110411-60110151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):130, 43

               
               
               Conread position:592-870
               
               
               Cow position:chr9:37069396-37069662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):175, 101

               
               
               Conread position:592-875
               
               
               Cow position:chr9:9405878-9406162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):49, 31

               
               
               Conread position:592-918
               
               
               Cow position:chr9:17676948-17677260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):130, 45

               
               
               Conread position:592-935
               
               
               Cow position:chr9:8937317-8936984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):268, 59

               
               
               Conread position:592-937
               
               
               Cow position:chr9:47906107-47906451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):109, 78

               
               
               Conread position:592-937
               
               
               Cow position:chr9:64106080-64105737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):60, 31

               
               
               Conread position:592-941
               
               
               Cow position:chr9:13169493-13169835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 14

               
               
               Conread position:592-941
               
               
               Cow position:chr9:61303176-61302833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 31

               
               
               Conread position:592-944
               
               
               Cow position:chr9:47445854-47446181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:247
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):262, 98

               
               
               Conread position:592-944
               
               
               Cow position:chr9:61022783-61022446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):339, 31

               
               
               Conread position:592-949
               
               
               Cow position:chr9:15982909-15983253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:236
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):33, 97

               
               
               Conread position:592-949
               
               
               Cow position:chr9:20091214-20090881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:252
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):130, 27

               
               
               Conread position:592-949
               
               
               Cow position:chr9:20318405-20318752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:240
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):31, 53

               
               
               Conread position:592-949
               
               
               Cow position:chr9:21030485-21030126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:245
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):33, 113

               
               
               Conread position:592-949
               
               
               Cow position:chr9:43207204-43207556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):34, 104

               
               
               Conread position:592-949
               
               
               Cow position:chr9:52689452-52689792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:250
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):35, 53

               
               
               Conread position:592-949
               
               
               Cow position:chr9:53257884-53258234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:235
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):35, 82

               
               
               Conread position:592-950
               
               
               Cow position:chr9:30477608-30477951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):61, 32

               
               
               Conread position:592-950
               
               
               Cow position:chr9:38793186-38792835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 34

               
               
               Conread position:592-951
               
               
               Cow position:chr9:11299518-11299852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:255
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):130, 31

               
               
               Conread position:592-951
               
               
               Cow position:chr9:19067950-19067589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:259
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):131, 31

               
               
               Conread position:592-951
               
               
               Cow position:chr9:47500034-47500381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:251
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):34, 53

               
               
               Conread position:592-958
               
               
               Cow position:chr9:6617818-6618189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:232
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):215, 125

               
               
               Conread position:592-958
               
               
               Cow position:chr9:16811487-16811848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:244
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):325, 106

               
               
               Conread position:592-958
               
               
               Cow position:chr9:31626318-31625945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:259
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):138, 20

               
               
               Conread position:592-958
               
               
               Cow position:chr9:32676855-32676488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:252
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):27, 116

               
               
               Conread position:592-959
               
               
               Cow position:chr9:40543149-40543504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:247
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):34, 44

               
               
               Conread position:592-959
               
               
               Cow position:chr9:41416527-41416142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:592-959
               
               
               Cow position:chr9:50977073-50977445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:265
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):24, 56

               
               
               Conread position:592-960
               
               
               Cow position:chr9:52505134-52505502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):34, 106

               
               
               Conread position:592-960
               
               
               Cow position:chr9:58979570-58979213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:262
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):134, 33

               
               
               Conread position:593-704
               
               
               Cow position:chr9:8525008-8524897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):87, 30

               
               
               Conread position:593-716
               
               
               Cow position:chr9:22227911-22228033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:97
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:593-754
               
               
               Cow position:chr9:36999889-37000047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):129, 49

               
               
               Conread position:593-754
               
               
               Cow position:chr9:50667596-50667435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):77, 116

               
               
               Conread position:593-809
               
               
               Cow position:chr9:54611063-54611276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):100, 62

               
               
               Conread position:593-841
               
               
               Cow position:chr9:30652534-30652782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):111, 31

               
               
               Conread position:593-855
               
               
               Cow position:chr9:35105609-35105877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:197
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):28, 59

               
               
               Conread position:593-866
               
               
               Cow position:chr9:4646155-4646421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):59, 116

               
               
               Conread position:593-875
               
               
               Cow position:chr9:22696395-22696116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:198
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):31, 79

               
               
               Conread position:593-903
               
               
               Cow position:chr9:56011665-56011371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):133, 69

               
               
               Conread position:593-928
               
               
               Cow position:chr9:62151273-62150954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:223
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:593-929
               
               
               Cow position:chr9:22443450-22443781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 114

               
               
               Conread position:593-936
               
               
               Cow position:chr9:22151913-22152247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:239
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):109, 14

               
               
               Conread position:593-939
               
               
               Cow position:chr9:20848103-20847778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):129, 30

               
               
               Conread position:593-941
               
               
               Cow position:chr9:5226996-5227330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):33, 172

               
               
               Conread position:593-941
               
               
               Cow position:chr9:20681231-20681572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):33, 101

               
               
               Conread position:593-941
               
               
               Cow position:chr9:34374760-34375097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:243
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):80, 30

               
               
               Conread position:593-945
               
               
               Cow position:chr9:60394879-60395223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:240
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):175, 30

               
               
               Conread position:593-948
               
               
               Cow position:chr9:22433760-22434102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):45, 34

               
               
               Conread position:593-949
               
               
               Cow position:chr9:25964656-25965018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):34, 114

               
               
               Conread position:593-949
               
               
               Cow position:chr9:42062284-42061915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:250
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):62, 75

               
               
               Conread position:593-950
               
               
               Cow position:chr9:54677403-54677076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:247
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):268, 33

               
               
               Conread position:593-951
               
               
               Cow position:chr9:29825208-29824837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:247
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):156, 31

               
               
               Conread position:593-951
               
               
               Cow position:chr9:31347126-31346770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:246
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):119, 32

               
               
               Conread position:593-951
               
               
               Cow position:chr9:35027994-35028348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 70

               
               
               Conread position:593-951
               
               
               Cow position:chr9:45285359-45285721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:252
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):111, 19

               
               
               Conread position:593-958
               
               
               Cow position:chr9:34697125-34697489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:258
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):33, 111

               
               
               Conread position:593-959
               
               
               Cow position:chr9:12428338-12428691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:250
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):33, 58

               
               
               Conread position:593-959
               
               
               Cow position:chr9:16121340-16120985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):85, 34

               
               
               Conread position:594-736
               
               
               Cow position:chr9:35305947-35306086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):32, 13

               
               
               Conread position:594-807
               
               
               Cow position:chr9:47472864-47472647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):32, 187

               
               
               Conread position:594-816
               
               
               Cow position:chr9:11313339-11313558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):26, 111

               
               
               Conread position:594-827
               
               
               Cow position:chr9:6089269-6089030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):29, 74

               
               
               Conread position:594-866
               
               
               Cow position:chr9:64155689-64155949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):73, 29

               
               
               Conread position:594-904
               
               
               Cow position:chr9:64091855-64091554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):115, 30

               
               
               Conread position:594-933
               
               
               Cow position:chr9:61739089-61738759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):105, 52

               
               
               Conread position:594-941
               
               
               Cow position:chr9:6851897-6852221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):128, 116

               
               
               Conread position:594-949
               
               
               Cow position:chr9:4512658-4512299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:243
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):32, 51

               
               
               Conread position:594-949
               
               
               Cow position:chr9:26477387-26477034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 68

               
               
               Conread position:594-958
               
               
               Cow position:chr9:26279006-26279359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 29

               
               
               Conread position:595-935
               
               
               Cow position:chr9:50202739-50202390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):173, 29

               
               
               Conread position:595-959
               
               
               Cow position:chr9:10650133-10650475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:259
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):31, 55

               
               
               Conread position:596-715
               
               
               Cow position:chr9:24997352-24997469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:596-899
               
               
               Cow position:chr9:51204889-51204594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):77, 27

               
               
               Conread position:596-916
               
               
               Cow position:chr9:64559715-64560030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):130, 108

               
               
               Conread position:596-937
               
               
               Cow position:chr9:51720733-51721053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:596-941
               
               
               Cow position:chr9:31557560-31557899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):116, 65

               
               
               Conread position:596-948
               
               
               Cow position:chr9:37017053-37016724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:247
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):109, 50

               
               
               Conread position:596-950
               
               
               Cow position:chr9:5263669-5263325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:249
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):106, 27

               
               
               Conread position:596-951
               
               
               Cow position:chr9:17871935-17872286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 112

               
               
               Conread position:596-951
               
               
               Cow position:chr9:31216257-31215899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):23, 98

               
               
               Conread position:596-956
               
               
               Cow position:chr9:20579437-20579772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:250
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):96, 27

               
               
               Conread position:596-959
               
               
               Cow position:chr9:48564251-48563893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:254
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):134, 67

               
               
               Conread position:596-960
               
               
               Cow position:chr9:5456005-5456359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:249
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):26, 109

               
               
               Conread position:597-848
               
               
               Cow position:chr9:17310387-17310641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):22, 132

               
               
               Conread position:597-860
               
               
               Cow position:chr9:5594668-5594410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):134, 66

               
               
               Conread position:597-941
               
               
               Cow position:chr9:12281137-12280803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 50

               
               
               Conread position:597-941
               
               
               Cow position:chr9:56087900-56088248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):100, 110

               
               
               Conread position:598-929
               
               
               Cow position:chr9:1755975-1756309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:236
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):25, 94

               
               
               Conread position:598-939
               
               
               Cow position:chr9:17799796-17799467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):124, 25

               
               
               Conread position:598-949
               
               
               Cow position:chr9:49374356-49374004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):21, 54

               
               
               Conread position:599-828
               
               
               Cow position:chr9:22114469-22114697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):221, 24

               
               
               Conread position:599-960
               
               
               Cow position:chr9:47590814-47591173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:246
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):27, 76

               
               
               Conread position:600-937
               
               
               Cow position:chr9:64637707-64637386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):248, 16

               
               
               Conread position:601-951
               
               
               Cow position:chr9:28747360-28747700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):341, 23

               
               
               Conread position:602-949
               
               
               Cow position:chr9:20321942-20322270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:241
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):299, 64

               
               
               Conread position:603-932
               
               
               Cow position:chr9:30402258-30402590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 310

               
               
               Conread position:603-939
               
               
               Cow position:chr9:36843949-36843615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):148, 99

               
               
               Conread position:604-819
               
               
               Cow position:chr9:35375589-35375375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):98, 106

               
               
               Conread position:604-929
               
               
               Cow position:chr9:39211768-39211453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):93, 103

               
               
               Conread position:604-936
               
               
               Cow position:chr9:63784766-63785074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:604-941
               
               
               Cow position:chr9:9573493-9573150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:239
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):119, 90

               
               
               Conread position:604-941
               
               
               Cow position:chr9:27356081-27355748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):100, 21

               
               
               Conread position:604-941
               
               
               Cow position:chr9:27358867-27358534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):100, 21

               
               
               Conread position:604-949
               
               
               Cow position:chr9:10905653-10905998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):18, 11

               
               
               Conread position:604-949
               
               
               Cow position:chr9:36410195-36410529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):23, 103

               
               
               Conread position:604-950
               
               
               Cow position:chr9:44388846-44389175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:224
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):22, 41

               
               
               Conread position:604-951
               
               
               Cow position:chr9:39011318-39011649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:241
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):338, 7

               
               
               Conread position:604-959
               
               
               Cow position:chr9:11303917-11304281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:253
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):21, 69

               
               
               Conread position:604-959
               
               
               Cow position:chr9:40302968-40303323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:242
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):97, 111

               
               
               Conread position:605-949
               
               
               Cow position:chr9:22318506-22318183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:234
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):97, 19

               
               
               Conread position:606-940
               
               
               Cow position:chr9:61457786-61457454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):64, 101

               
               
               Conread position:606-952
               
               
               Cow position:chr9:27279468-27279125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 91

               
               
               Conread position:607-930
               
               
               Cow position:chr9:63153661-63153973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:221
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):205, 52

               
               
               Conread position:607-933
               
               
               Cow position:chr9:5836317-5835988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:234
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):45, 16

               
               
               Conread position:607-939
               
               
               Cow position:chr9:59013176-59013506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):101, 18

               
               
               Conread position:607-941
               
               
               Cow position:chr9:26344811-26345132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:232
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):116, 16

               
               
               Conread position:607-941
               
               
               Cow position:chr9:32238539-32238202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:220
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):70, 63

               
               
               Conread position:607-955
               
               
               Cow position:chr9:52267599-52267946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):253, 16

               
               
               Conread position:608-855
               
               
               Cow position:chr9:19714232-19713993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:608-952
               
               
               Cow position:chr9:43757694-43757363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:244
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):115, 15

               
               
               Conread position:608-959
               
               
               Cow position:chr9:11310020-11309670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):233, 245

               
               
               Conread position:609-941
               
               
               Cow position:chr9:33114501-33114169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:232
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):123, 17

               
               
               Conread position:613-927
               
               
               Cow position:chr9:18215764-18216068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):117, 74

               
               
               Conread position:614-846
               
               
               Cow position:chr9:1867604-1867373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):13, 93

               
               
               Conread position:614-903
               
               
               Cow position:chr9:41394504-41394782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:617-941
               
               
               Cow position:chr9:18426064-18425741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):88, 9

               
               
               Conread position:618-843
               
               
               Cow position:chr9:26310650-26310431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):106, 28

               
               
               Conread position:618-856
               
               
               Cow position:chr9:48727219-48727451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):149, 40

               
               
               Conread position:618-874
               
               
               Cow position:chr9:15225151-15225403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):109, 87

               
               
               Conread position:618-875
               
               
               Cow position:chr9:28686539-28686278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):74, 43

               
               
               Conread position:618-928
               
               
               Cow position:chr9:3186275-3185972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:216
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):103, 77

               
               
               Conread position:618-940
               
               
               Cow position:chr9:4262945-4263258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:618-940
               
               
               Cow position:chr9:34284095-34283786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:618-941
               
               
               Cow position:chr9:22408891-22408587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:224
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):174, 38

               
               
               Conread position:618-959
               
               
               Cow position:chr9:38624482-38624811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:240
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):21, 37

               
               
               Conread position:618-959
               
               
               Cow position:chr9:48730575-48730241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 40

               
               
               Conread position:619-856
               
               
               Cow position:chr9:5219022-5219260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):33, 28

               
               
               Conread position:619-860
               
               
               Cow position:chr9:52839740-52839971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:619-937
               
               
               Cow position:chr9:7953046-7952736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):111, 41

               
               
               Conread position:619-949
               
               
               Cow position:chr9:8628776-8629091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):104, 17

               
               
               Conread position:620-937
               
               
               Cow position:chr9:41283158-41282846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:620-941
               
               
               Cow position:chr9:62724682-62724372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:222
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):102, 118

               
               
               Conread position:620-951
               
               
               Cow position:chr9:32669802-32670126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 49

               
               
               Conread position:621-878
               
               
               Cow position:chr9:6596090-6596340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):101, 67

               
               
               Conread position:621-941
               
               
               Cow position:chr9:1877863-1878168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:621-957
               
               
               Cow position:chr9:20816007-20815678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:227
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):112, 63

               
               
               Conread position:624-857
               
               
               Cow position:chr9:10819691-10819917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:624-936
               
               
               Cow position:chr9:60081047-60080728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):106, 78

               
               
               Conread position:624-945
               
               
               Cow position:chr9:32348680-32348997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):232, 63

               
               
               Conread position:624-948
               
               
               Cow position:chr9:29091936-29091594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):106, 86

               
               
               Conread position:624-949
               
               
               Cow position:chr9:3573611-3573286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:222
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):27, 85

               
               
               Conread position:625-831
               
               
               Cow position:chr9:41486100-41486305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):80, 70

               
               
               Conread position:625-949
               
               
               Cow position:chr9:11969328-11969008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):116, 73

               
               
               Conread position:627-945
               
               
               Cow position:chr9:51566356-51566672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 57

               
               
               Conread position:627-949
               
               
               Cow position:chr9:40507466-40507771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):103, 60

               
               
               Conread position:628-853
               
               
               Cow position:chr9:39681477-39681254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):94, 78

               
               
               Conread position:628-929
               
               
               Cow position:chr9:32853502-32853817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:210
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):69, 293

               
               
               Conread position:628-938
               
               
               Cow position:chr9:32815779-32815485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):206, 67

               
               
               Conread position:628-944
               
               
               Cow position:chr9:34410258-34410566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:223
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):42, 47

               
               
               Conread position:629-941
               
               
               Cow position:chr9:6189235-6189533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:214
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):197, 79

               
               
               Conread position:629-941
               
               
               Cow position:chr9:31359737-31359434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):101, 73

               
               
               Conread position:629-951
               
               
               Cow position:chr9:40005612-40005297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):78, 73

               
               
               Conread position:630-925
               
               
               Cow position:chr9:55438289-55438586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):63, 226

               
               
               Conread position:630-945
               
               
               Cow position:chr9:44396795-44396485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):17, 41

               
               
               Conread position:630-958
               
               
               Cow position:chr9:13743797-13744121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:228
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):100, 54

               
               
               Conread position:631-944
               
               
               Cow position:chr9:37934102-37934412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):99, 66

               
               
               Conread position:632-950
               
               
               Cow position:chr9:8636803-8636499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):42, 66

               
               
               Conread position:633-957
               
               
               Cow position:chr9:5899829-5900140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):130, 75

               
               
               Conread position:636-960
               
               
               Cow position:chr9:4630234-4629923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):94, 73

               
               
               Conread position:648-937
               
               
               Cow position:chr9:45171101-45171389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):74, 222

               
               
               Conread position:649-929
               
               
               Cow position:chr9:38645226-38645507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):239, 146

               
               
               Conread position:650-921
               
               
               Cow position:chr9:46930574-46930310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):22, 50

               
               
               Conread position:650-935
               
               
               Cow position:chr9:54493253-54492974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):62, 8

               
               
               Conread position:650-937
               
               
               Cow position:chr9:38941316-38941603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):54, 61

               
               
               Conread position:650-941
               
               
               Cow position:chr9:33584567-33584854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):55, 88

               
               
               Conread position:650-941
               
               
               Cow position:chr9:53109368-53109081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):73, 64

               
               
               Conread position:650-945
               
               
               Cow position:chr9:39709960-39709679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):204, 46

               
               
               Conread position:650-949
               
               
               Cow position:chr9:28917364-28917663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):37, 66

               
               
               Conread position:650-952
               
               
               Cow position:chr9:25583946-25583650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):81, 55

               
               
               Conread position:651-941
               
               
               Cow position:chr9:45728893-45728607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):73, 55

               
               
               Conread position:651-941
               
               
               Cow position:chr9:50310659-50310933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):208, 19

               
               
               Conread position:651-949
               
               
               Cow position:chr9:50125479-50125778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):71, 53

               
               
               Conread position:652-941
               
               
               Cow position:chr9:23955870-23956147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:652-941
               
               
               Cow position:chr9:41785334-41785051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):51, 181

               
               
               Conread position:652-949
               
               
               Cow position:chr9:21938740-21939022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:652-959
               
               
               Cow position:chr9:23788551-23788240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:210
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):72, 57

               
               
               Conread position:653-959
               
               
               Cow position:chr9:52511227-52510929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):21, 17

               
               
               Conread position:654-941
               
               
               Cow position:chr9:20755644-20755929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):58, 140

               
               
               Conread position:654-949
               
               
               Cow position:chr9:9311972-9311681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):76, 54

               
               
               Conread position:654-958
               
               
               Cow position:chr9:60399300-60399002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):110, 11

               
               
               Conread position:655-860
               
               
               Cow position:chr9:28379080-28378876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):19, 43

               
               
               Conread position:657-945
               
               
               Cow position:chr9:52754748-52755026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:658-874
               
               
               Cow position:chr9:18827947-18828160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):66, 39

               
               
               Conread position:659-946
               
               
               Cow position:chr9:49863444-49863732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:189
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):71, 50

               
               
               Conread position:663-949
               
               
               Cow position:chr9:35547374-35547087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):34, 53

               
               
               Conread position:663-951
               
               
               Cow position:chr9:35844910-35845201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):11, 6

               
               
               Conread position:664-941
               
               
               Cow position:chr9:3356654-3356927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):66, 32

               
               
               Conread position:664-954
               
               
               Cow position:chr9:28263619-28263333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):78, 32

               
               
               Conread position:665-941
               
               
               Cow position:chr9:9460076-9459819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):115, 32

               
               
               Conread position:665-941
               
               
               Cow position:chr9:59997930-59998200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:188
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):16, 46

               
               
               Conread position:666-949
               
               
               Cow position:chr9:45445264-45444981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):122, 26

               
               
               Conread position:666-949
               
               
               Cow position:chr9:56262009-56262287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):65, 30

               
               
               Conread position:667-950
               
               
               Cow position:chr9:35832517-35832794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):65, 176

               
               
               Conread position:672-954
               
               
               Cow position:chr9:34278962-34279242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):30, 11

               
               
               Conread position:673-927
               
               
               Cow position:chr9:5469955-5469713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):105, 29

               
               
               Conread position:673-927
               
               
               Cow position:chr9:29194930-29195188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):50, 17

               
               
               Conread position:673-940
               
               
               Cow position:chr9:5342159-5342415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:673-941
               
               
               Cow position:chr9:17840582-17840849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):57, 185

               
               
               Conread position:673-955
               
               
               Cow position:chr9:8834037-8834316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):32, 42

               
               
               Conread position:673-959
               
               
               Cow position:chr9:6954154-6954441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):50, 35

               
               
               Conread position:674-952
               
               
               Cow position:chr9:26102815-26102549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):260, 35

               
               
               Conread position:675-935
               
               
               Cow position:chr9:5163893-5164150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):55, 31

               
               
               Conread position:675-936
               
               
               Cow position:chr9:33823210-33822952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):48, 8

               
               
               Conread position:675-941
               
               
               Cow position:chr9:58662329-58662073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:676-941
               
               
               Cow position:chr9:35188176-35188445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):50, 21

               
               
               Conread position:678-941
               
               
               Cow position:chr9:34024789-34024529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):47, 19

               
               
               Conread position:678-951
               
               
               Cow position:chr9:5110947-5110676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):44, 7

               
               
               Conread position:680-935
               
               
               Cow position:chr9:33542142-33541887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):50, 17

               
               
               Conread position:680-951
               
               
               Cow position:chr9:50382239-50382500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):43, 77

               
               
               Conread position:681-941
               
               
               Cow position:chr9:9686329-9686588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):207, 25

               
               
               Conread position:682-937
               
               
               Cow position:chr9:7805879-7806120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):48, 25

               
               
               Conread position:682-948
               
               
               Cow position:chr9:62145143-62144874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):17, 28

               
               
               Conread position:682-957
               
               
               Cow position:chr9:33838227-33838490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):40, 24

               
               
               Conread position:683-853
               
               
               Cow position:chr9:5666149-5665981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:690-945
               
               
               Cow position:chr9:47517273-47517023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):40, 7

               
               
               Conread position:696-949
               
               
               Cow position:chr9:32387912-32388163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):10, 14

               
               
               Conread position:696-959
               
               
               Cow position:chr9:52030548-52030288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):138, 10

               
               
               Conread position:698-941
               
               
               Cow position:chr9:58452008-58452240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):135, 107

               
               
               Conread position:701-939
               
               
               Cow position:chr9:63170042-63169801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:706-941
               
               
               Cow position:chr9:47214482-47214720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:706-949
               
               
               Cow position:chr9:17276826-17277070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:707-945
               
               
               Cow position:chr9:45749503-45749258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):23, 151

               
               
               Conread position:708-941
               
               
               Cow position:chr9:52763698-52763923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):5, 137

               
               
               Conread position:708-945
               
               
               Cow position:chr9:44758873-44759101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:709-927
               
               
               Cow position:chr9:31513879-31514091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):16, 72

               
               
               Conread position:709-949
               
               
               Cow position:chr9:12681174-12680935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):21, 80

               
               
               Conread position:709-949
               
               
               Cow position:chr9:13945666-13945424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:709-959
               
               
               Cow position:chr9:28156753-28156512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):21, 107

               
               
               Conread position:709-959
               
               
               Cow position:chr9:55494926-55495179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):25, 202

               
               
               Conread position:710-925
               
               
               Cow position:chr9:58368938-58369147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):21, 59

               
               
               Conread position:710-930
               
               
               Cow position:chr9:54986096-54986320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:710-935
               
               
               Cow position:chr9:41964675-41964897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):6, 94

               
               
               Conread position:710-948
               
               
               Cow position:chr9:20451569-20451807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):12, 140

               
               
               Conread position:710-952
               
               
               Cow position:chr9:36628175-36627944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):58, 5

               
               
               Conread position:710-960
               
               
               Cow position:chr9:5104344-5104598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):13, 81

               
               
               Conread position:711-933
               
               
               Cow position:chr9:55529853-55529641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):19, 53

               
               
               Conread position:711-941
               
               
               Cow position:chr9:48017039-48016819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):19, 137

               
               
               Conread position:712-941
               
               
               Cow position:chr9:37199184-37198957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):11, 141

               
               
               Conread position:714-941
               
               
               Cow position:chr9:4241461-4241237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):9, 148

               
               
               Conread position:714-949
               
               
               Cow position:chr9:35049528-35049302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):8, 74

               
               
               Conread position:714-949
               
               
               Cow position:chr9:57131550-57131320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):8, 133

               
               
               Conread position:714-951
               
               
               Cow position:chr9:14738304-14738072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):9, 151

               
               
               Conread position:717-959
               
               
               Cow position:chr9:32661974-32662224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):7, 27

               
               
               Conread position:717-960
               
               
               Cow position:chr9:63700721-63700954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):13, 91

               
               
               Conread position:722-958
               
               
               Cow position:chr9:25375690-25375920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:724-945
               
               
               Cow position:chr9:27345540-27345763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):147, 117

               
               
               Conread position:725-937
               
               
               Cow position:chr9:11098413-11098617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:725-949
               
               
               Cow position:chr9:7611749-7611965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:726-928
               
               
               Cow position:chr9:53124131-53123929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:726-933
               
               
               Cow position:chr9:22165671-22165879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):125, 112

               
               
               Conread position:726-938
               
               
               Cow position:chr9:39149121-39148915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:726-948
               
               
               Cow position:chr9:16121565-16121353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:728-927
               
               
               Cow position:chr9:48115719-48115527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:729-951
               
               
               Cow position:chr9:34484634-34484409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:730-948
               
               
               Cow position:chr9:29984502-29984284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:730-949
               
               
               Cow position:chr9:41644712-41644931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):97, 92

               
               
               Conread position:730-959
               
               
               Cow position:chr9:8613173-8613401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):62, 108

               
               
               Conread position:732-960
               
               
               Cow position:chr9:43680156-43679929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):202, 149

               
               
               Conread position:735-933
               
               
               Cow position:chr9:7101475-7101272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):124, 74

               
               
               Conread position:737-936
               
               
               Cow position:chr9:34707281-34707475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:737-950
               
               
               Cow position:chr9:31344576-31344789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):164, 173

               
               
               Conread position:738-932
               
               
               Cow position:chr9:37955141-37955335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:740-948
               
               
               Cow position:chr9:6447136-6446928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):140, 173

               
               
               Conread position:741-919
               
               
               Cow position:chr9:49984014-49984192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:741-937
               
               
               Cow position:chr9:5220783-5220982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):171, 0

               
               
               Conread position:741-947
               
               
               Cow position:chr9:55807659-55807459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):9, 36

               
               
               Conread position:741-949
               
               
               Cow position:chr9:1884103-1884319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:741-952
               
               
               Cow position:chr9:61286788-61286580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):97, 6

               
               
               Conread position:741-954
               
               
               Cow position:chr9:35466495-35466713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:741-957
               
               
               Cow position:chr9:9557713-9557495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):100, 77

               
               
               Conread position:742-938
               
               
               Cow position:chr9:13993791-13993596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:742-944
               
               
               Cow position:chr9:40603694-40603494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:745-941
               
               
               Cow position:chr9:12773713-12773524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:745-945
               
               
               Cow position:chr9:19718317-19718508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:747-945
               
               
               Cow position:chr9:34276189-34276387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:747-955
               
               
               Cow position:chr9:3847423-3847211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:747-960
               
               
               Cow position:chr9:35403604-35403391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):153, 124

               
               
               Conread position:747-960
               
               
               Cow position:chr9:36458020-36457806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):111, 116

               
               
               Conread position:749-946
               
               
               Cow position:chr9:40984524-40984329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:750-937
               
               
               Cow position:chr9:24079320-24079139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:751-937
               
               
               Cow position:chr9:48900818-48901001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):8, 156

               
               
               Conread position:754-930
               
               
               Cow position:chr9:14357429-14357253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:758-957
               
               
               Cow position:chr9:32052286-32052090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):138, 110

               
               
               Conread position:773-937
               
               
               Cow position:chr9:21292413-21292573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:773-947
               
               
               Cow position:chr9:16216976-16216801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):22, 104

               
               
               Conread position:773-948
               
               
               Cow position:chr9:17769313-17769145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:773-949
               
               
               Cow position:chr9:34760369-34760543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:773-950
               
               
               Cow position:chr9:12786478-12786657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):166, 0

               
               
               Conread position:773-951
               
               
               Cow position:chr9:9392872-9392692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:773-952
               
               
               Cow position:chr9:8573388-8573201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):57, 141

               
               
               Conread position:773-955
               
               
               Cow position:chr9:11447813-11447991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):128, 69

               
               
               Conread position:773-959
               
               
               Cow position:chr9:8645261-8645078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):152, 0

               
               
               Conread position:774-933
               
               
               Cow position:chr9:18163361-18163519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:774-937
               
               
               Cow position:chr9:36634501-36634338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:774-938
               
               
               Cow position:chr9:16115614-16115772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:774-939
               
               
               Cow position:chr9:45740148-45740312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:774-941
               
               
               Cow position:chr9:11380652-11380815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:774-941
               
               
               Cow position:chr9:12337896-12337730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:774-943
               
               
               Cow position:chr9:2037435-2037264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:774-948
               
               
               Cow position:chr9:7543265-7543433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):21, 78

               
               
               Conread position:774-949
               
               
               Cow position:chr9:11873310-11873473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:774-949
               
               
               Cow position:chr9:20828900-20828726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:774-949
               
               
               Cow position:chr9:62136120-62136296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):172, 0

               
               
               Conread position:774-951
               
               
               Cow position:chr9:44918286-44918460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):131, 72

               
               
               Conread position:774-957
               
               
               Cow position:chr9:26394355-26394534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:774-959
               
               
               Cow position:chr9:8468051-8467871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:774-959
               
               
               Cow position:chr9:35295684-35295508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:774-959
               
               
               Cow position:chr9:61019368-61019553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:775-929
               
               
               Cow position:chr9:1712713-1712866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:775-929
               
               
               Cow position:chr9:28342658-28342813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:775-937
               
               
               Cow position:chr9:46344929-46344759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:775-939
               
               
               Cow position:chr9:34265088-34264915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):93, 141

               
               
               Conread position:775-941
               
               
               Cow position:chr9:53323792-53323957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:775-945
               
               
               Cow position:chr9:27495230-27495057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):50, 111

               
               
               Conread position:775-945
               
               
               Cow position:chr9:27813213-27813046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:775-945
               
               
               Cow position:chr9:54598666-54598499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:775-951
               
               
               Cow position:chr9:14519387-14519554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:775-951
               
               
               Cow position:chr9:17785573-17785750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):161, 0

               
               
               Conread position:775-951
               
               
               Cow position:chr9:28315422-28315243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:775-951
               
               
               Cow position:chr9:34423614-34423439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):168, 0

               
               
               Conread position:775-951
               
               
               Cow position:chr9:59897586-59897416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:775-959
               
               
               Cow position:chr9:12355779-12355597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):81, 132

               
               
               Conread position:775-959
               
               
               Cow position:chr9:23840401-23840592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):83, 176

               
               
               Conread position:775-959
               
               
               Cow position:chr9:48046532-48046348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):25, 169

               
               
               Conread position:775-959
               
               
               Cow position:chr9:53631930-53632114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:776-941
               
               
               Cow position:chr9:35932822-35932984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:776-951
               
               
               Cow position:chr9:5068834-5068657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:776-960
               
               
               Cow position:chr9:9091113-9091296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):156, 0

               
               
               Conread position:776-960
               
               
               Cow position:chr9:51891238-51891063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:777-937
               
               
               Cow position:chr9:5772686-5772846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:777-938
               
               
               Cow position:chr9:63185704-63185864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:777-959
               
               
               Cow position:chr9:37286820-37286641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):123, 11

               
               
               Conread position:780-928
               
               
               Cow position:chr9:11199949-11200097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:780-958
               
               
               Cow position:chr9:60741196-60741372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):159, 46

               
               
               Conread position:781-949
               
               
               Cow position:chr9:2397794-2397632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:782-941
               
               
               Cow position:chr9:13722152-13722311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:782-941
               
               
               Cow position:chr9:59586297-59586145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:782-944
               
               
               Cow position:chr9:47510584-47510743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:782-945
               
               
               Cow position:chr9:37950911-37951074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:782-949
               
               
               Cow position:chr9:151854-151688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:782-959
               
               
               Cow position:chr9:19656990-19657164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):164, 73

               
               
               Conread position:782-959
               
               
               Cow position:chr9:41470112-41470288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):161, 0

               
               
               Conread position:783-941
               
               
               Cow position:chr9:48367542-48367699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:784-946
               
               
               Cow position:chr9:30665004-30665175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:784-959
               
               
               Cow position:chr9:26715239-26715067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):79, 20

               
               
               Conread position:787-941
               
               
               Cow position:chr9:30194992-30194841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:787-951
               
               
               Cow position:chr9:45711019-45711183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):114, 123

               
               
               Conread position:788-941
               
               
               Cow position:chr9:16826215-16826372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:789-946
               
               
               Cow position:chr9:20355846-20355693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:790-935
               
               
               Cow position:chr9:4244406-4244260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:790-949
               
               
               Cow position:chr9:44527096-44526931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:790-960
               
               
               Cow position:chr9:8537286-8537117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:790-960
               
               
               Cow position:chr9:51609253-51609088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):148, 62

               
               
               Conread position:793-945
               
               
               Cow position:chr9:43345713-43345561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:793-959
               
               
               Cow position:chr9:45170406-45170572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:795-949
               
               
               Cow position:chr9:20394342-20394492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):105, 66

               
               
               Conread position:796-956
               
               
               Cow position:chr9:26578230-26578395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:802-940
               
               
               Cow position:chr9:12495183-12495045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:828-944
               
               
               Cow position:chr9:52651549-52651665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:295-935
               
               
               Cow position:chrX:29937673-29938314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:646
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):331, 357

               
               
               Conread position:494-949
               
               
               Cow position:chrX:870390-869946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:297
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):34, 59

               
               
               Conread position:536-925
               
               
               Cow position:chrX:34222539-34222926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:264
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):18, 22

               
               
               Conread position:537-760
               
               
               Cow position:chrX:36961471-36961689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):24, 18

               
               
               Conread position:546-941
               
               
               Cow position:chrX:5017573-5017188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:273
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):178, 8

               
               
               Conread position:547-944
               
               
               Cow position:chrX:37955673-37956076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:277
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):152, 7

               
               
               Conread position:547-949
               
               
               Cow position:chrX:27442720-27442302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:280
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):30, 7

               
               
               Conread position:549-762
               
               
               Cow position:chrX:47209187-47209396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):103, 30

               
               
               Conread position:559-950
               
               
               Cow position:chrX:27705432-27705823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 10

               
               
               Conread position:560-941
               
               
               Cow position:chrX:10866018-10865642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:247
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):32, 143

               
               
               Conread position:565-941
               
               
               Cow position:chrX:27394161-27393790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):312, 22

               
               
               Conread position:565-960
               
               
               Cow position:chrX:17231587-17231984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 87

               
               
               Conread position:566-700
               
               
               Cow position:chrX:30832992-30832859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):27, 59

               
               
               Conread position:566-766
               
               
               Cow position:chrX:7718708-7718903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):27, 62

               
               
               Conread position:566-816
               
               
               Cow position:chrX:27680255-27680502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):26, 58

               
               
               Conread position:566-842
               
               
               Cow position:chrX:7571760-7572037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:200
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):26, 57

               
               
               Conread position:566-874
               
               
               Cow position:chrX:878519-878222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):152, 27

               
               
               Conread position:566-875
               
               
               Cow position:chrX:43730361-43730061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):37, 31

               
               
               Conread position:566-941
               
               
               Cow position:chrX:31250243-31250618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 140

               
               
               Conread position:566-949
               
               
               Cow position:chrX:33000757-33001134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 62

               
               
               Conread position:566-955
               
               
               Cow position:chrX:7178758-7179126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:266
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):27, 43

               
               
               Conread position:566-955
               
               
               Cow position:chrX:33466467-33466865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:283
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):26, 68

               
               
               Conread position:566-957
               
               
               Cow position:chrX:6407402-6407786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 62

               
               
               Conread position:566-959
               
               
               Cow position:chrX:15147334-15146950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:270
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):17, 136

               
               
               Conread position:566-959
               
               
               Cow position:chrX:31949077-31948688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 37

               
               
               Conread position:569-764
               
               
               Cow position:chrX:41198961-41199158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):23, 100

               
               
               Conread position:569-842
               
               
               Cow position:chrX:47481660-47481926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):59, 134

               
               
               Conread position:569-903
               
               
               Cow position:chrX:34662992-34662656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:234
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):24, 122

               
               
               Conread position:569-921
               
               
               Cow position:chrX:41068579-41068928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:241
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):24, 51

               
               
               Conread position:569-935
               
               
               Cow position:chrX:842015-842378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:252
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):22, 144

               
               
               Conread position:569-949
               
               
               Cow position:chrX:42381243-42380875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 82

               
               
               Conread position:571-865
               
               
               Cow position:chrX:38728598-38728887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):21, 140

               
               
               Conread position:573-944
               
               
               Cow position:chrX:15231795-15231428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):29, 38

               
               
               Conread position:574-736
               
               
               Cow position:chrX:23497807-23497643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):19, 54

               
               
               Conread position:574-748
               
               
               Cow position:chrX:35969221-35969050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):95, 19

               
               
               Conread position:574-829
               
               
               Cow position:chrX:44836852-44837093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):148, 28

               
               
               Conread position:574-842
               
               
               Cow position:chrX:1514543-1514289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):18, 97

               
               
               Conread position:574-941
               
               
               Cow position:chrX:34313891-34314249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 52

               
               
               Conread position:574-959
               
               
               Cow position:chrX:28013582-28013193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:256
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):150, 19

               
               
               Conread position:574-960
               
               
               Cow position:chrX:34532386-34532756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:263
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):148, 44

               
               
               Conread position:575-772
               
               
               Cow position:chrX:28845700-28845892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):117, 13

               
               
               Conread position:575-927
               
               
               Cow position:chrX:35273221-35273586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:247
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):17, 49

               
               
               Conread position:576-812
               
               
               Cow position:chrX:21566272-21566507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):67, 14

               
               
               Conread position:576-847
               
               
               Cow position:chrX:17541829-17542094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):19, 50

               
               
               Conread position:576-848
               
               
               Cow position:chrX:37119459-37119728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):14, 53

               
               
               Conread position:576-867
               
               
               Cow position:chrX:20697737-20697456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):46, 11

               
               
               Conread position:576-875
               
               
               Cow position:chrX:13382195-13382488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):17, 127

               
               
               Conread position:576-896
               
               
               Cow position:chrX:8797121-8797436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):146, 11

               
               
               Conread position:576-929
               
               
               Cow position:chrX:27227989-27228345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 135

               
               
               Conread position:576-932
               
               
               Cow position:chrX:8730953-8731313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 197

               
               
               Conread position:576-936
               
               
               Cow position:chrX:37781244-37780889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 47

               
               
               Conread position:576-948
               
               
               Cow position:chrX:9201416-9201778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 48

               
               
               Conread position:576-948
               
               
               Cow position:chrX:26492876-26493243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):157, 11

               
               
               Conread position:576-948
               
               
               Cow position:chrX:45976786-45977159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:253
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):17, 199

               
               
               Conread position:576-949
               
               
               Cow position:chrX:11655962-11656314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:576-951
               
               
               Cow position:chrX:41870941-41871294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:254
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):147, 11

               
               
               Conread position:576-959
               
               
               Cow position:chrX:32420088-32420456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 15

               
               
               Conread position:577-720
               
               
               Cow position:chrX:35284486-35284632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:577-752
               
               
               Cow position:chrX:42994483-42994653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):15, 66

               
               
               Conread position:577-753
               
               
               Cow position:chrX:29509577-29509397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:577-803
               
               
               Cow position:chrX:24105493-24105718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):15, 85

               
               
               Conread position:577-831
               
               
               Cow position:chrX:11856295-11856549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:187
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):11, 88

               
               
               Conread position:577-841
               
               
               Cow position:chrX:39558480-39558220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):145, 16

               
               
               Conread position:577-846
               
               
               Cow position:chrX:19273856-19273573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):15, 48

               
               
               Conread position:577-874
               
               
               Cow position:chrX:4043984-4043705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):146, 46

               
               
               Conread position:577-893
               
               
               Cow position:chrX:24288056-24287753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):173, 46

               
               
               Conread position:577-911
               
               
               Cow position:chrX:13647918-13647586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):11, 47

               
               
               Conread position:577-929
               
               
               Cow position:chrX:7336695-7337063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):15, 111

               
               
               Conread position:577-930
               
               
               Cow position:chrX:32820895-32821257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 131

               
               
               Conread position:577-934
               
               
               Cow position:chrX:31436345-31436690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 47

               
               
               Conread position:577-941
               
               
               Cow position:chrX:40557814-40557430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:262
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):15, 47

               
               
               Conread position:577-942
               
               
               Cow position:chrX:31442955-31442610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:254
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):15, 73

               
               
               Conread position:577-945
               
               
               Cow position:chrX:27509153-27508792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 59

               
               
               Conread position:577-949
               
               
               Cow position:chrX:15545758-15546117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 90

               
               
               Conread position:577-949
               
               
               Cow position:chrX:42492648-42492285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:260
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):15, 84

               
               
               Conread position:577-950
               
               
               Cow position:chrX:38963973-38964334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 35

               
               
               Conread position:577-960
               
               
               Cow position:chrX:20887779-20887402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:266
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):15, 79

               
               
               Conread position:578-950
               
               
               Cow position:chrX:20168425-20168792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 127

               
               
               Conread position:579-766
               
               
               Cow position:chrX:41992176-41991991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):40, 108

               
               
               Conread position:579-937
               
               
               Cow position:chrX:44396888-44397235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:249
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):13, 45

               
               
               Conread position:580-700
               
               
               Cow position:chrX:20790792-20790911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:580-752
               
               
               Cow position:chrX:40647858-40648026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):142, 22

               
               
               Conread position:580-857
               
               
               Cow position:chrX:29120916-29121192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):12, 46

               
               
               Conread position:580-926
               
               
               Cow position:chrX:28878300-28877953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:248
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):15, 33

               
               
               Conread position:581-860
               
               
               Cow position:chrX:42873263-42873533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):7, 23

               
               
               Conread position:581-866
               
               
               Cow position:chrX:33639842-33640129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):5, 66

               
               
               Conread position:581-922
               
               
               Cow position:chrX:22821922-22822264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:239
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):11, 44

               
               
               Conread position:581-929
               
               
               Cow position:chrX:10831622-10831265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 44

               
               
               Conread position:581-931
               
               
               Cow position:chrX:5680063-5679712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):123, 79

               
               
               Conread position:581-937
               
               
               Cow position:chrX:21986421-21986077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:581-940
               
               
               Cow position:chrX:36393476-36393114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:247
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):11, 163

               
               
               Conread position:581-941
               
               
               Cow position:chrX:24365956-24365594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 230

               
               
               Conread position:581-945
               
               
               Cow position:chrX:46032851-46032495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:238
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):22, 15

               
               
               Conread position:581-946
               
               
               Cow position:chrX:10252309-10251969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):178, 43

               
               
               Conread position:581-949
               
               
               Cow position:chrX:25816029-25815664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:259
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):11, 44

               
               
               Conread position:581-951
               
               
               Cow position:chrX:36975820-36976192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 88

               
               
               Conread position:581-954
               
               
               Cow position:chrX:22482814-22482447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):89, 42

               
               
               Conread position:581-955
               
               
               Cow position:chrX:36355986-36356347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 44

               
               
               Conread position:581-956
               
               
               Cow position:chrX:21593158-21593535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:266
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):11, 122

               
               
               Conread position:581-959
               
               
               Cow position:chrX:48236687-48237063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:261
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):11, 46

               
               
               Conread position:584-866
               
               
               Cow position:chrX:33493653-33493929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):138, 39

               
               
               Conread position:584-941
               
               
               Cow position:chrX:38094648-38094298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 194

               
               
               Conread position:585-752
               
               
               Cow position:chrX:17497961-17498125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):117, 39

               
               
               Conread position:585-805
               
               
               Cow position:chrX:42171420-42171201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):142, 38

               
               
               Conread position:585-820
               
               
               Cow position:chrX:15814963-15815191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:178
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:585-842
               
               
               Cow position:chrX:36067893-36068145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):137, 19

               
               
               Conread position:585-930
               
               
               Cow position:chrX:20151722-20152065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:243
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):42, 173

               
               
               Conread position:585-930
               
               
               Cow position:chrX:34543662-34544003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 82

               
               
               Conread position:585-930
               
               
               Cow position:chrX:45875267-45875607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):41, 110

               
               
               Conread position:585-933
               
               
               Cow position:chrX:1616168-1615838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:243
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):139, 39

               
               
               Conread position:585-938
               
               
               Cow position:chrX:48262482-48262830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):38, 112

               
               
               Conread position:585-958
               
               
               Cow position:chrX:41027033-41027408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 40

               
               
               Conread position:585-960
               
               
               Cow position:chrX:32020246-32019885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:256
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):41, 113

               
               
               Conread position:586-941
               
               
               Cow position:chrX:33855356-33854998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:253
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):112, 37

               
               
               Conread position:586-941
               
               
               Cow position:chrX:45430140-45429803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):13, 38

               
               
               Conread position:588-807
               
               
               Cow position:chrX:44873682-44873466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):38, 115

               
               
               Conread position:588-867
               
               
               Cow position:chrX:6265718-6265444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):133, 23

               
               
               Conread position:591-707
               
               
               Cow position:chrX:14003759-14003644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-750
               
               
               Cow position:chrX:41743793-41743952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):135, 124

               
               
               Conread position:591-751
               
               
               Cow position:chrX:34270283-34270441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):135, 79

               
               
               Conread position:591-751
               
               
               Cow position:chrX:42874863-42875022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):32, 117

               
               
               Conread position:591-752
               
               
               Cow position:chrX:6234571-6234410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):131, 123

               
               
               Conread position:591-761
               
               
               Cow position:chrX:35681220-35681391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):28, 115

               
               
               Conread position:591-767
               
               
               Cow position:chrX:14924881-14925057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):35, 118

               
               
               Conread position:591-767
               
               
               Cow position:chrX:26876001-26875826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):127, 32

               
               
               Conread position:591-793
               
               
               Cow position:chrX:19003182-19003374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-795
               
               
               Cow position:chrX:13785481-13785280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):129, 32

               
               
               Conread position:591-798
               
               
               Cow position:chrX:16055093-16055293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):28, 80

               
               
               Conread position:591-802
               
               
               Cow position:chrX:12405505-12405291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):34, 82

               
               
               Conread position:591-806
               
               
               Cow position:chrX:40809568-40809787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:591-807
               
               
               Cow position:chrX:2467765-2467979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):31, 81

               
               
               Conread position:591-809
               
               
               Cow position:chrX:26440897-26440688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:591-812
               
               
               Cow position:chrX:7646138-7646351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-823
               
               
               Cow position:chrX:35224178-35224407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):11, 18

               
               
               Conread position:591-829
               
               
               Cow position:chrX:45005512-45005741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):31, 50

               
               
               Conread position:591-829
               
               
               Cow position:chrX:45403948-45403708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):35, 117

               
               
               Conread position:591-831
               
               
               Cow position:chrX:21004564-21004802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):131, 35

               
               
               Conread position:591-835
               
               
               Cow position:chrX:8925583-8925822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:591-840
               
               
               Cow position:chrX:41884532-41884284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-842
               
               
               Cow position:chrX:7161942-7162186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-843
               
               
               Cow position:chrX:11939045-11938802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-846
               
               
               Cow position:chrX:27772079-27771834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):131, 33

               
               
               Conread position:591-848
               
               
               Cow position:chrX:10412103-10411848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-854
               
               
               Cow position:chrX:22454210-22453957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):35, 11

               
               
               Conread position:591-860
               
               
               Cow position:chrX:5679684-5679424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):131, 79

               
               
               Conread position:591-861
               
               
               Cow position:chrX:11073306-11073043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):106, 16

               
               
               Conread position:591-867
               
               
               Cow position:chrX:37836470-37836733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):131, 105

               
               
               Conread position:591-872
               
               
               Cow position:chrX:9416811-9416524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):100, 32

               
               
               Conread position:591-873
               
               
               Cow position:chrX:6278620-6278337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 133

               
               
               Conread position:591-874
               
               
               Cow position:chrX:46433368-46433652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:201
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):29, 123

               
               
               Conread position:591-875
               
               
               Cow position:chrX:616380-616095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:201
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):114, 32

               
               
               Conread position:591-875
               
               
               Cow position:chrX:619122-618847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):129, 32

               
               
               Conread position:591-875
               
               
               Cow position:chrX:9365793-9365511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):144, 33

               
               
               Conread position:591-875
               
               
               Cow position:chrX:11085175-11084900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):131, 93

               
               
               Conread position:591-875
               
               
               Cow position:chrX:17725856-17726137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):131, 33

               
               
               Conread position:591-875
               
               
               Cow position:chrX:27516410-27516683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):132, 104

               
               
               Conread position:591-875
               
               
               Cow position:chrX:29680378-29680103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):177, 33

               
               
               Conread position:591-875
               
               
               Cow position:chrX:34401880-34402168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):215, 32

               
               
               Conread position:591-877
               
               
               Cow position:chrX:6260276-6259985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:198
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):52, 128

               
               
               Conread position:591-878
               
               
               Cow position:chrX:28134232-28134504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):74, 25

               
               
               Conread position:591-879
               
               
               Cow position:chrX:38006882-38006605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-884
               
               
               Cow position:chrX:14599415-14599704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):115, 33

               
               
               Conread position:591-896
               
               
               Cow position:chrX:31252300-31252591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-903
               
               
               Cow position:chrX:34502804-34503118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):263, 33

               
               
               Conread position:591-903
               
               
               Cow position:chrX:47046633-47046323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):29, 86

               
               
               Conread position:591-916
               
               
               Cow position:chrX:1055511-1055178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:232
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):35, 53

               
               
               Conread position:591-918
               
               
               Cow position:chrX:27946177-27945848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:231
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):35, 120

               
               
               Conread position:591-918
               
               
               Cow position:chrX:47484386-47484057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:230
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):28, 101

               
               
               Conread position:591-921
               
               
               Cow position:chrX:46771086-46770754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):36, 101

               
               
               Conread position:591-922
               
               
               Cow position:chrX:31294675-31294360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):269, 32

               
               
               Conread position:591-923
               
               
               Cow position:chrX:35542777-35543094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:234
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-925
               
               
               Cow position:chrX:12309503-12309173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 16

               
               
               Conread position:591-927
               
               
               Cow position:chrX:47344180-47344513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):34, 10

               
               
               Conread position:591-928
               
               
               Cow position:chrX:4768626-4768943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:234
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):88, 32

               
               
               Conread position:591-928
               
               
               Cow position:chrX:29544996-29544671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:244
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):58, 86

               
               
               Conread position:591-932
               
               
               Cow position:chrX:34238602-34238942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:240
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):31, 56

               
               
               Conread position:591-933
               
               
               Cow position:chrX:40685449-40685109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 32

               
               
               Conread position:591-935
               
               
               Cow position:chrX:4279229-4278896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:237
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):135, 47

               
               
               Conread position:591-936
               
               
               Cow position:chrX:29601948-29601606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 33

               
               
               Conread position:591-936
               
               
               Cow position:chrX:40269370-40269731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:591-937
               
               
               Cow position:chrX:1176097-1175766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):139, 33

               
               
               Conread position:591-937
               
               
               Cow position:chrX:1499547-1499878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):34, 80

               
               
               Conread position:591-937
               
               
               Cow position:chrX:9635299-9634968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):235, 32

               
               
               Conread position:591-937
               
               
               Cow position:chrX:15007268-15006935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:238
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:591-937
               
               
               Cow position:chrX:17794867-17795203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:235
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):106, 22

               
               
               Conread position:591-937
               
               
               Cow position:chrX:22074682-22075019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:246
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-937
               
               
               Cow position:chrX:27145505-27145823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:591-938
               
               
               Cow position:chrX:16541792-16541431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:237
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):35, 180

               
               
               Conread position:591-938
               
               
               Cow position:chrX:35268764-35269081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:241
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):299, 33

               
               
               Conread position:591-939
               
               
               Cow position:chrX:5118620-5118272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-940
               
               
               Cow position:chrX:29542337-29542001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:240
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):134, 33

               
               
               Conread position:591-940
               
               
               Cow position:chrX:47186439-47186099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:228
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):48, 80

               
               
               Conread position:591-941
               
               
               Cow position:chrX:3654490-3654831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):175, 34

               
               
               Conread position:591-941
               
               
               Cow position:chrX:5638283-5637951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:239
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):213, 33

               
               
               Conread position:591-941
               
               
               Cow position:chrX:6413926-6414260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):26, 107

               
               
               Conread position:591-941
               
               
               Cow position:chrX:7351181-7351529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:247
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):35, 114

               
               
               Conread position:591-941
               
               
               Cow position:chrX:13912961-13913303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):119, 32

               
               
               Conread position:591-941
               
               
               Cow position:chrX:21663194-21663523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):35, 54

               
               
               Conread position:591-941
               
               
               Cow position:chrX:34441570-34441225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 124

               
               
               Conread position:591-941
               
               
               Cow position:chrX:38218593-38218941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 35

               
               
               Conread position:591-941
               
               
               Cow position:chrX:38853080-38853439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-941
               
               
               Cow position:chrX:40320287-40320636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:244
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):35, 92

               
               
               Conread position:591-941
               
               
               Cow position:chrX:42247303-42246953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 43

               
               
               Conread position:591-941
               
               
               Cow position:chrX:47248903-47248569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):15, 33

               
               
               Conread position:591-941
               
               
               Cow position:chrX:47280050-47279708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):111, 33

               
               
               Conread position:591-944
               
               
               Cow position:chrX:4512116-4512476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:233
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):106, 252

               
               
               Conread position:591-944
               
               
               Cow position:chrX:36283231-36283571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 110

               
               
               Conread position:591-944
               
               
               Cow position:chrX:38549334-38549678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 35

               
               
               Conread position:591-947
               
               
               Cow position:chrX:41790562-41790193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:249
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):139, 38

               
               
               Conread position:591-948
               
               
               Cow position:chrX:11633560-11633918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 123

               
               
               Conread position:591-948
               
               
               Cow position:chrX:30962992-30962640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 111

               
               
               Conread position:591-948
               
               
               Cow position:chrX:31729325-31729673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):349, 42

               
               
               Conread position:591-948
               
               
               Cow position:chrX:32330040-32330406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:251
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):35, 50

               
               
               Conread position:591-948
               
               
               Cow position:chrX:38935167-38935515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):35, 54

               
               
               Conread position:591-949
               
               
               Cow position:chrX:11844365-11844000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:246
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):36, 71

               
               
               Conread position:591-949
               
               
               Cow position:chrX:18111272-18111615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):35, 54

               
               
               Conread position:591-949
               
               
               Cow position:chrX:21642596-21642245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:239
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:591-949
               
               
               Cow position:chrX:22921198-22921557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:245
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):35, 109

               
               
               Conread position:591-949
               
               
               Cow position:chrX:46546995-46546637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):34, 60

               
               
               Conread position:591-950
               
               
               Cow position:chrX:6488458-6488802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:240
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):74, 113

               
               
               Conread position:591-950
               
               
               Cow position:chrX:12979945-12979598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-950
               
               
               Cow position:chrX:23514133-23513765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:266
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):131, 33

               
               
               Conread position:591-950
               
               
               Cow position:chrX:27432032-27431687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 32

               
               
               Conread position:591-950
               
               
               Cow position:chrX:34315407-34315764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:250
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):135, 28

               
               
               Conread position:591-950
               
               
               Cow position:chrX:34505165-34504816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:247
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):108, 32

               
               
               Conread position:591-950
               
               
               Cow position:chrX:37489608-37489967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 64

               
               
               Conread position:591-950
               
               
               Cow position:chrX:43115033-43115386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:248
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):16, 33

               
               
               Conread position:591-951
               
               
               Cow position:chrX:4399011-4399356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 32

               
               
               Conread position:591-951
               
               
               Cow position:chrX:4403196-4403557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 72

               
               
               Conread position:591-951
               
               
               Cow position:chrX:13177583-13177246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:256
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):149, 28

               
               
               Conread position:591-951
               
               
               Cow position:chrX:16762648-16763007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:250
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):38, 71

               
               
               Conread position:591-951
               
               
               Cow position:chrX:18204581-18204228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:242
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):38, 105

               
               
               Conread position:591-951
               
               
               Cow position:chrX:20584206-20584549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 32

               
               
               Conread position:591-951
               
               
               Cow position:chrX:23122272-23122629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):100, 243

               
               
               Conread position:591-951
               
               
               Cow position:chrX:25207961-25207623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:249
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):35, 94

               
               
               Conread position:591-951
               
               
               Cow position:chrX:29723623-29723989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 109

               
               
               Conread position:591-951
               
               
               Cow position:chrX:46532624-46532252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:252
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:591-954
               
               
               Cow position:chrX:7695630-7696001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:260
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):80, 118

               
               
               Conread position:591-956
               
               
               Cow position:chrX:8869520-8869157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 32

               
               
               Conread position:591-958
               
               
               Cow position:chrX:7721871-7722219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:252
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):62, 32

               
               
               Conread position:591-958
               
               
               Cow position:chrX:20677254-20677611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):355, 14

               
               
               Conread position:591-958
               
               
               Cow position:chrX:45110541-45110894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:248
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):175, 16

               
               
               Conread position:591-959
               
               
               Cow position:chrX:3579826-3580191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 80

               
               
               Conread position:591-959
               
               
               Cow position:chrX:18485680-18486049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):86, 52

               
               
               Conread position:591-959
               
               
               Cow position:chrX:27446572-27446927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:259
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):29, 120

               
               
               Conread position:592-716
               
               
               Cow position:chrX:35609871-35609993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:592-742
               
               
               Cow position:chrX:38439361-38439511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):107, 31

               
               
               Conread position:592-745
               
               
               Cow position:chrX:44053141-44053293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):53, 32

               
               
               Conread position:592-761
               
               
               Cow position:chrX:19015321-19015486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):110, 31

               
               
               Conread position:592-766
               
               
               Cow position:chrX:12018171-12018346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):13, 122

               
               
               Conread position:592-829
               
               
               Cow position:chrX:46722854-46722617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):34, 104

               
               
               Conread position:592-829
               
               
               Cow position:chrX:47301019-47300786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):30, 53

               
               
               Conread position:592-829
               
               
               Cow position:chrX:47302993-47302760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):31, 53

               
               
               Conread position:592-829
               
               
               Cow position:chrX:48652840-48652604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):30, 79

               
               
               Conread position:592-831
               
               
               Cow position:chrX:11082731-11082503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:592-886
               
               
               Cow position:chrX:27119582-27119862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):131, 69

               
               
               Conread position:592-918
               
               
               Cow position:chrX:21064166-21064487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):34, 53

               
               
               Conread position:592-921
               
               
               Cow position:chrX:47166003-47165676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):34, 49

               
               
               Conread position:592-929
               
               
               Cow position:chrX:15596924-15597244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:225
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):31, 66

               
               
               Conread position:592-930
               
               
               Cow position:chrX:44744934-44744605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):28, 105

               
               
               Conread position:592-930
               
               
               Cow position:chrX:48646717-48646392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:223
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):34, 73

               
               
               Conread position:592-937
               
               
               Cow position:chrX:26881685-26881338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 31

               
               
               Conread position:592-939
               
               
               Cow position:chrX:8917279-8917621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):132, 102

               
               
               Conread position:592-939
               
               
               Cow position:chrX:45968045-45968363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):176, 19

               
               
               Conread position:592-941
               
               
               Cow position:chrX:14884075-14883729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 31

               
               
               Conread position:592-941
               
               
               Cow position:chrX:44961632-44961983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):134, 5

               
               
               Conread position:592-942
               
               
               Cow position:chrX:34411727-34412077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 19

               
               
               Conread position:592-945
               
               
               Cow position:chrX:34554607-34554956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 117

               
               
               Conread position:592-947
               
               
               Cow position:chrX:151785-152139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:241
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):34, 95

               
               
               Conread position:592-948
               
               
               Cow position:chrX:4296945-4296589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):28, 111

               
               
               Conread position:592-948
               
               
               Cow position:chrX:36061038-36061395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:241
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):34, 252

               
               
               Conread position:592-949
               
               
               Cow position:chrX:23563910-23563554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 106

               
               
               Conread position:592-950
               
               
               Cow position:chrX:25035501-25035145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:245
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):37, 109

               
               
               Conread position:592-955
               
               
               Cow position:chrX:5919379-5919732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:254
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):131, 31

               
               
               Conread position:592-959
               
               
               Cow position:chrX:21672438-21672809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:262
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):131, 116

               
               
               Conread position:592-959
               
               
               Cow position:chrX:45598717-45598357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):133, 20

               
               
               Conread position:593-736
               
               
               Cow position:chrX:41167081-41166938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):134, 121

               
               
               Conread position:593-753
               
               
               Cow position:chrX:36723207-36723048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:593-826
               
               
               Cow position:chrX:27685131-27685363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):129, 115

               
               
               Conread position:593-842
               
               
               Cow position:chrX:37232297-37232537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:593-849
               
               
               Cow position:chrX:917480-917231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):129, 35

               
               
               Conread position:593-855
               
               
               Cow position:chrX:43527387-43527651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):26, 119

               
               
               Conread position:593-860
               
               
               Cow position:chrX:11717900-11717635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):109, 33

               
               
               Conread position:593-900
               
               
               Cow position:chrX:32171004-32170705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):30, 58

               
               
               Conread position:593-905
               
               
               Cow position:chrX:16416394-16416694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):33, 51

               
               
               Conread position:593-941
               
               
               Cow position:chrX:11614583-11614903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:237
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):129, 113

               
               
               Conread position:593-941
               
               
               Cow position:chrX:37072292-37072614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:593-941
               
               
               Cow position:chrX:40035558-40035214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 30

               
               
               Conread position:593-941
               
               
               Cow position:chrX:40826871-40826522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 119

               
               
               Conread position:593-941
               
               
               Cow position:chrX:48010482-48010833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:235
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):33, 115

               
               
               Conread position:593-944
               
               
               Cow position:chrX:4632968-4632623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 72

               
               
               Conread position:593-944
               
               
               Cow position:chrX:9425856-9425531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:245
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):129, 33

               
               
               Conread position:593-949
               
               
               Cow position:chrX:27174879-27175236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 121

               
               
               Conread position:593-951
               
               
               Cow position:chrX:24331662-24332015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:593-954
               
               
               Cow position:chrX:42855338-42855704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 25

               
               
               Conread position:593-955
               
               
               Cow position:chrX:44657079-44656721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:231
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):28, 145

               
               
               Conread position:593-956
               
               
               Cow position:chrX:20340004-20339653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 20

               
               
               Conread position:593-957
               
               
               Cow position:chrX:45502036-45502381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:252
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):109, 30

               
               
               Conread position:593-958
               
               
               Cow position:chrX:46291023-46291388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:250
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):208, 14

               
               
               Conread position:593-959
               
               
               Cow position:chrX:40480985-40480604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:263
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):217, 124

               
               
               Conread position:593-959
               
               
               Cow position:chrX:46587701-46588066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 126

               
               
               Conread position:593-960
               
               
               Cow position:chrX:43049945-43050317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:252
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):30, 67

               
               
               Conread position:594-938
               
               
               Cow position:chrX:46022673-46023000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:237
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):33, 54

               
               
               Conread position:594-939
               
               
               Cow position:chrX:47873454-47873110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):32, 103

               
               
               Conread position:594-949
               
               
               Cow position:chrX:34565168-34565521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):119, 30

               
               
               Conread position:594-955
               
               
               Cow position:chrX:6544141-6544489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:252
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):127, 29

               
               
               Conread position:594-959
               
               
               Cow position:chrX:35885845-35885485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 95

               
               
               Conread position:595-791
               
               
               Cow position:chrX:11589702-11589509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):127, 111

               
               
               Conread position:595-809
               
               
               Cow position:chrX:17662707-17662501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:595-937
               
               
               Cow position:chrX:42927933-42927606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:240
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:595-952
               
               
               Cow position:chrX:34792422-34792085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:250
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):159, 29

               
               
               Conread position:595-955
               
               
               Cow position:chrX:10829317-10829677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):14, 120

               
               
               Conread position:595-959
               
               
               Cow position:chrX:4269181-4268824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:251
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):31, 102

               
               
               Conread position:596-732
               
               
               Cow position:chrX:32747570-32747704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:596-816
               
               
               Cow position:chrX:43779960-43779743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):19, 12

               
               
               Conread position:596-848
               
               
               Cow position:chrX:45113504-45113757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):31, 111

               
               
               Conread position:596-854
               
               
               Cow position:chrX:29289467-29289720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):101, 46

               
               
               Conread position:596-863
               
               
               Cow position:chrX:7710656-7710388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):30, 116

               
               
               Conread position:596-903
               
               
               Cow position:chrX:28866112-28865814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):90, 28

               
               
               Conread position:596-904
               
               
               Cow position:chrX:4515571-4515879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):163, 38

               
               
               Conread position:596-933
               
               
               Cow position:chrX:18695036-18694702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:235
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):237, 30

               
               
               Conread position:596-937
               
               
               Cow position:chrX:14973854-14973533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):106, 115

               
               
               Conread position:596-937
               
               
               Cow position:chrX:29229896-29230231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):6, 28

               
               
               Conread position:596-941
               
               
               Cow position:chrX:5872204-5872560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 79

               
               
               Conread position:596-941
               
               
               Cow position:chrX:41122954-41123273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):134, 74

               
               
               Conread position:596-941
               
               
               Cow position:chrX:46072933-46072602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):126, 28

               
               
               Conread position:596-949
               
               
               Cow position:chrX:30338055-30337716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:241
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):252, 29

               
               
               Conread position:596-949
               
               
               Cow position:chrX:41879045-41878701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 29

               
               
               Conread position:596-951
               
               
               Cow position:chrX:22387356-22387005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:253
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):271, 108

               
               
               Conread position:596-958
               
               
               Cow position:chrX:9651138-9650787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 27

               
               
               Conread position:597-714
               
               
               Cow position:chrX:42461856-42461741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:93
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:597-829
               
               
               Cow position:chrX:48195152-48194918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):29, 127

               
               
               Conread position:597-835
               
               
               Cow position:chrX:26625782-26625548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):117, 26

               
               
               Conread position:597-874
               
               
               Cow position:chrX:42235640-42235361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):107, 29

               
               
               Conread position:597-948
               
               
               Cow position:chrX:30133434-30133089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 119

               
               
               Conread position:597-955
               
               
               Cow position:chrX:40175055-40175418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):133, 112

               
               
               Conread position:597-955
               
               
               Cow position:chrX:44054690-44055045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 101

               
               
               Conread position:597-960
               
               
               Cow position:chrX:41526633-41526287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:248
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:598-866
               
               
               Cow position:chrX:29194123-29194384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):224, 25

               
               
               Conread position:598-918
               
               
               Cow position:chrX:4992127-4991819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):13, 69

               
               
               Conread position:598-941
               
               
               Cow position:chrX:33654958-33654615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):22, 106

               
               
               Conread position:598-949
               
               
               Cow position:chrX:17949601-17949256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 99

               
               
               Conread position:599-852
               
               
               Cow position:chrX:48044622-48044376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):124, 12

               
               
               Conread position:601-707
               
               
               Cow position:chrX:32870556-32870450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:88
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):86, 22

               
               
               Conread position:601-838
               
               
               Cow position:chrX:37574743-37574966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:601-959
               
               
               Cow position:chrX:47657276-47657642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):121, 38

               
               
               Conread position:602-768
               
               
               Cow position:chrX:35848454-35848621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):102, 55

               
               
               Conread position:602-951
               
               
               Cow position:chrX:13923764-13924101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:232
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):121, 81

               
               
               Conread position:603-833
               
               
               Cow position:chrX:12203494-12203274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):24, 92

               
               
               Conread position:603-874
               
               
               Cow position:chrX:4746346-4746084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:603-891
               
               
               Cow position:chrX:6690363-6690083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):21, 48

               
               
               Conread position:603-911
               
               
               Cow position:chrX:169646-169343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):67, 43

               
               
               Conread position:604-819
               
               
               Cow position:chrX:48571100-48570881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:604-903
               
               
               Cow position:chrX:27301765-27302067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):126, 102

               
               
               Conread position:604-925
               
               
               Cow position:chrX:31515066-31515383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):86, 13

               
               
               Conread position:604-941
               
               
               Cow position:chrX:34376842-34377167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:606-875
               
               
               Cow position:chrX:23562533-23562798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):116, 7

               
               
               Conread position:607-832
               
               
               Cow position:chrX:47967496-47967727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):20, 229

               
               
               Conread position:607-875
               
               
               Cow position:chrX:16348672-16348408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):14, 149

               
               
               Conread position:607-941
               
               
               Cow position:chrX:12290624-12290946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:231
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):13, 40

               
               
               Conread position:607-959
               
               
               Cow position:chrX:44192546-44192197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:244
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):117, 39

               
               
               Conread position:608-950
               
               
               Cow position:chrX:21327802-21328151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 157

               
               
               Conread position:609-930
               
               
               Cow position:chrX:45448799-45449127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):115, 64

               
               
               Conread position:610-889
               
               
               Cow position:chrX:23113176-23113459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):14, 52

               
               
               Conread position:611-941
               
               
               Cow position:chrX:9252257-9251935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):223, 11

               
               
               Conread position:612-903
               
               
               Cow position:chrX:40283028-40283313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):111, 97

               
               
               Conread position:612-938
               
               
               Cow position:chrX:10516159-10516479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 12

               
               
               Conread position:612-959
               
               
               Cow position:chrX:14955862-14955522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):249, 72

               
               
               Conread position:613-864
               
               
               Cow position:chrX:29549644-29549400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):89, 109

               
               
               Conread position:613-875
               
               
               Cow position:chrX:37129172-37129432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):65, 36

               
               
               Conread position:613-944
               
               
               Cow position:chrX:12095870-12095540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 81

               
               
               Conread position:613-950
               
               
               Cow position:chrX:34837150-34836836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:237
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:614-941
               
               
               Cow position:chrX:38560462-38560778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):30, 9

               
               
               Conread position:614-950
               
               
               Cow position:chrX:161317-161638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):110, 70

               
               
               Conread position:615-945
               
               
               Cow position:chrX:27261093-27261422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 40

               
               
               Conread position:618-862
               
               
               Cow position:chrX:5900377-5900612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):104, 83

               
               
               Conread position:618-930
               
               
               Cow position:chrX:13868611-13868921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):108, 84

               
               
               Conread position:619-752
               
               
               Cow position:chrX:12115955-12116087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:619-879
               
               
               Cow position:chrX:38208633-38208378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:619-955
               
               
               Cow position:chrX:29050156-29050483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:238
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):96, 76

               
               
               Conread position:619-960
               
               
               Cow position:chrX:1466070-1466412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 76

               
               
               Conread position:621-894
               
               
               Cow position:chrX:33205053-33204787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:621-949
               
               
               Cow position:chrX:48071072-48071398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:218
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):101, 75

               
               
               Conread position:621-958
               
               
               Cow position:chrX:31489431-31489766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 63

               
               
               Conread position:622-941
               
               
               Cow position:chrX:4153124-4152816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:223
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):7, 74

               
               
               Conread position:622-952
               
               
               Cow position:chrX:41238439-41238123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):108, 39

               
               
               Conread position:622-960
               
               
               Cow position:chrX:8492993-8493315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):317, 20

               
               
               Conread position:623-949
               
               
               Cow position:chrX:35590844-35590522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):94, 72

               
               
               Conread position:624-866
               
               
               Cow position:chrX:36514980-36514739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):98, 78

               
               
               Conread position:624-939
               
               
               Cow position:chrX:6559531-6559230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:624-951
               
               
               Cow position:chrX:40680525-40680853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 92

               
               
               Conread position:624-959
               
               
               Cow position:chrX:20882023-20881714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):69, 46

               
               
               Conread position:625-828
               
               
               Cow position:chrX:18273143-18272941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):67, 90

               
               
               Conread position:627-894
               
               
               Cow position:chrX:16575040-16575294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:627-941
               
               
               Cow position:chrX:22115401-22115086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 82

               
               
               Conread position:628-959
               
               
               Cow position:chrX:22283750-22284086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:236
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):76, 56

               
               
               Conread position:630-937
               
               
               Cow position:chrX:39220000-39220312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):95, 35

               
               
               Conread position:631-941
               
               
               Cow position:chrX:36866092-36866401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:211
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):79, 66

               
               
               Conread position:637-941
               
               
               Cow position:chrX:48003774-48004074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):85, 60

               
               
               Conread position:638-918
               
               
               Cow position:chrX:19965474-19965190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):62, 82

               
               
               Conread position:641-955
               
               
               Cow position:chrX:13121861-13122188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):51, 133

               
               
               Conread position:643-959
               
               
               Cow position:chrX:27459789-27460114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):98, 53

               
               
               Conread position:646-949
               
               
               Cow position:chrX:46793810-46793514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):9, 22

               
               
               Conread position:647-957
               
               
               Cow position:chrX:7648464-7648170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):75, 48

               
               
               Conread position:649-950
               
               
               Cow position:chrX:13146920-13147221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):82, 47

               
               
               Conread position:650-941
               
               
               Cow position:chrX:27511367-27511644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):34, 58

               
               
               Conread position:650-949
               
               
               Cow position:chrX:27380293-27380596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):23, 46

               
               
               Conread position:650-950
               
               
               Cow position:chrX:25036927-25037229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:207
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):80, 56

               
               
               Conread position:650-951
               
               
               Cow position:chrX:2675017-2674715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):105, 42

               
               
               Conread position:652-932
               
               
               Cow position:chrX:1360028-1360301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):22, 18

               
               
               Conread position:652-941
               
               
               Cow position:chrX:296337-296620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):64, 104

               
               
               Conread position:652-950
               
               
               Cow position:chrX:5063195-5063473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):78, 18

               
               
               Conread position:652-951
               
               
               Cow position:chrX:38321445-38321144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):56, 206

               
               
               Conread position:652-958
               
               
               Cow position:chrX:30271-30580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):108, 70

               
               
               Conread position:653-948
               
               
               Cow position:chrX:19469563-19469279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):281, 41

               
               
               Conread position:653-956
               
               
               Cow position:chrX:40108573-40108269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):77, 36

               
               
               Conread position:654-876
               
               
               Cow position:chrX:32978133-32977922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:654-937
               
               
               Cow position:chrX:1088198-1087924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):32, 7

               
               
               Conread position:654-941
               
               
               Cow position:chrX:4109134-4109413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:655-948
               
               
               Cow position:chrX:44339379-44339086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):71, 119

               
               
               Conread position:655-950
               
               
               Cow position:chrX:5134420-5134711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):67, 42

               
               
               Conread position:656-941
               
               
               Cow position:chrX:35985764-35986043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):51, 41

               
               
               Conread position:658-945
               
               
               Cow position:chrX:18964876-18964602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):75, 15

               
               
               Conread position:661-930
               
               
               Cow position:chrX:47358260-47358531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):69, 5

               
               
               Conread position:661-937
               
               
               Cow position:chrX:22393035-22392764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):62, 48

               
               
               Conread position:661-941
               
               
               Cow position:chrX:44202094-44201817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):56, 5

               
               
               Conread position:661-941
               
               
               Cow position:chrX:48532267-48532542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):61, 5

               
               
               Conread position:661-949
               
               
               Cow position:chrX:44859910-44859626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):69, 5

               
               
               Conread position:661-949
               
               
               Cow position:chrX:44954445-44954730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):61, 5

               
               
               Conread position:661-949
               
               
               Cow position:chrX:48198694-48198412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):61, 5

               
               
               Conread position:661-951
               
               
               Cow position:chrX:47013450-47013163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):61, 5

               
               
               Conread position:661-951
               
               
               Cow position:chrX:48473860-48474150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):61, 5

               
               
               Conread position:661-959
               
               
               Cow position:chrX:45488871-45489167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):61, 5

               
               
               Conread position:663-958
               
               
               Cow position:chrX:36367989-36367689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):41, 59

               
               
               Conread position:664-951
               
               
               Cow position:chrX:24457599-24457309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:665-929
               
               
               Cow position:chrX:4645957-4645698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:666-959
               
               
               Cow position:chrX:34540635-34540928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):65, 49

               
               
               Conread position:666-960
               
               
               Cow position:chrX:6599828-6599527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):57, 48

               
               
               Conread position:668-937
               
               
               Cow position:chrX:27075092-27074827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):14, 37

               
               
               Conread position:671-940
               
               
               Cow position:chrX:35431283-35431014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):88, 51

               
               
               Conread position:672-949
               
               
               Cow position:chrX:43150382-43150667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):42, 103

               
               
               Conread position:673-937
               
               
               Cow position:chrX:24749050-24749311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):52, 34

               
               
               Conread position:673-941
               
               
               Cow position:chrX:42893880-42894150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):33, 184

               
               
               Conread position:673-951
               
               
               Cow position:chrX:19394515-19394794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):49, 24

               
               
               Conread position:673-951
               
               
               Cow position:chrX:48558710-48558985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):57, 24

               
               
               Conread position:673-952
               
               
               Cow position:chrX:11326137-11325866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):50, 24

               
               
               Conread position:674-942
               
               
               Cow position:chrX:28940210-28940473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):127, 12

               
               
               Conread position:675-941
               
               
               Cow position:chrX:17956660-17956917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:182
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):57, 31

               
               
               Conread position:676-929
               
               
               Cow position:chrX:12219118-12219362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:676-935
               
               
               Cow position:chrX:44796348-44796607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):54, 21

               
               
               Conread position:676-941
               
               
               Cow position:chrX:46722624-46722361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):46, 21

               
               
               Conread position:676-948
               
               
               Cow position:chrX:48194925-48194656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):54, 21

               
               
               Conread position:676-949
               
               
               Cow position:chrX:44090888-44091159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):54, 21

               
               
               Conread position:676-949
               
               
               Cow position:chrX:45005409-45005139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):46, 21

               
               
               Conread position:676-949
               
               
               Cow position:chrX:45254617-45254346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):46, 21

               
               
               Conread position:676-949
               
               
               Cow position:chrX:48397862-48397590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):46, 21

               
               
               Conread position:676-950
               
               
               Cow position:chrX:44591096-44590824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):54, 21

               
               
               Conread position:676-951
               
               
               Cow position:chrX:48574612-48574885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):46, 21

               
               
               Conread position:676-960
               
               
               Cow position:chrX:40532078-40531779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):186, 39

               
               
               Conread position:677-937
               
               
               Cow position:chrX:38642216-38642466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):46, 17

               
               
               Conread position:678-951
               
               
               Cow position:chrX:41941594-41941862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:200
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):222, 19

               
               
               Conread position:680-918
               
               
               Cow position:chrX:1397596-1397830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):159, 17

               
               
               Conread position:680-948
               
               
               Cow position:chrX:43152187-43151916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):50, 26

               
               
               Conread position:683-875
               
               
               Cow position:chrX:20743575-20743768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):19, 26

               
               
               Conread position:686-941
               
               
               Cow position:chrX:25846101-25845845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):31, 162

               
               
               Conread position:688-949
               
               
               Cow position:chrX:26843290-26843028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):35, 21

               
               
               Conread position:689-948
               
               
               Cow position:chrX:42836163-42836416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:693-941
               
               
               Cow position:chrX:42432529-42432286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):76, 16

               
               
               Conread position:694-948
               
               
               Cow position:chrX:47255430-47255684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):28, 12

               
               
               Conread position:695-941
               
               
               Cow position:chrX:40336894-40337139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):18, 28

               
               
               Conread position:696-941
               
               
               Cow position:chrX:32574300-32574549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):28, 187

               
               
               Conread position:696-959
               
               
               Cow position:chrX:16836303-16836046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):34, 74

               
               
               Conread position:697-950
               
               
               Cow position:chrX:16984625-16984871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):26, 128

               
               
               Conread position:699-955
               
               
               Cow position:chrX:42479820-42480068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):24, 15

               
               
               Conread position:708-949
               
               
               Cow position:chrX:24170735-24170489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):11, 106

               
               
               Conread position:708-959
               
               
               Cow position:chrX:27668962-27668716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:183
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):149, 0

               
               
               Conread position:709-939
               
               
               Cow position:chrX:2935953-2936179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):14, 144

               
               
               Conread position:709-949
               
               
               Cow position:chrX:26979793-26979555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):21, 90

               
               
               Conread position:709-950
               
               
               Cow position:chrX:23335976-23335738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):21, 55

               
               
               Conread position:710-914
               
               
               Cow position:chrX:11859540-11859335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):12, 89

               
               
               Conread position:710-937
               
               
               Cow position:chrX:47345325-47345554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):13, 6

               
               
               Conread position:710-938
               
               
               Cow position:chrX:29478721-29478947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):20, 58

               
               
               Conread position:710-941
               
               
               Cow position:chrX:3806678-3806907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):6, 144

               
               
               Conread position:710-941
               
               
               Cow position:chrX:17292951-17293184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):11, 137

               
               
               Conread position:710-941
               
               
               Cow position:chrX:38587846-38587617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):20, 196

               
               
               Conread position:710-947
               
               
               Cow position:chrX:35275983-35276220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):20, 34

               
               
               Conread position:710-954
               
               
               Cow position:chrX:39290356-39290599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):13, 133

               
               
               Conread position:711-944
               
               
               Cow position:chrX:44040179-44040408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):19, 54

               
               
               Conread position:714-958
               
               
               Cow position:chrX:34420735-34420980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):16, 160

               
               
               Conread position:716-950
               
               
               Cow position:chrX:38967891-38968132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):8, 30

               
               
               Conread position:716-952
               
               
               Cow position:chrX:17524381-17524145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):26, 69

               
               
               Conread position:717-941
               
               
               Cow position:chrX:32943072-32942852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):6, 190

               
               
               Conread position:721-949
               
               
               Cow position:chrX:25049273-25049045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):132, 127

               
               
               Conread position:722-937
               
               
               Cow position:chrX:38301819-38302038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):45, 54

               
               
               Conread position:723-959
               
               
               Cow position:chrX:29467767-29467537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:724-943
               
               
               Cow position:chrX:35392282-35392074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):216, 40

               
               
               Conread position:724-959
               
               
               Cow position:chrX:4328171-4327934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):195, 111

               
               
               Conread position:725-938
               
               
               Cow position:chrX:3494809-3494596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:725-941
               
               
               Cow position:chrX:20957251-20957465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):206, 0

               
               
               Conread position:725-949
               
               
               Cow position:chrX:36109603-36109378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:725-958
               
               
               Cow position:chrX:24336064-24335831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:726-903
               
               
               Cow position:chrX:39180219-39180043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:726-937
               
               
               Cow position:chrX:1122529-1122323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:726-948
               
               
               Cow position:chrX:42450000-42449778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):42, 50

               
               
               Conread position:729-938
               
               
               Cow position:chrX:19761771-19761974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:729-950
               
               
               Cow position:chrX:31479988-31480203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):113, 59

               
               
               Conread position:729-951
               
               
               Cow position:chrX:20583683-20583898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:729-960
               
               
               Cow position:chrX:20345470-20345698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:731-956
               
               
               Cow position:chrX:19018812-19018584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:731-959
               
               
               Cow position:chrX:5026275-5026496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):178, 119

               
               
               Conread position:731-959
               
               
               Cow position:chrX:45139913-45139685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:731-960
               
               
               Cow position:chrX:19717540-19717758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:732-941
               
               
               Cow position:chrX:28067870-28068079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:732-951
               
               
               Cow position:chrX:35658819-35659032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):93, 32

               
               
               Conread position:732-958
               
               
               Cow position:chrX:35285193-35285420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):208, 0

               
               
               Conread position:734-949
               
               
               Cow position:chrX:42050247-42050033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:738-951
               
               
               Cow position:chrX:16763901-16763691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):17, 114

               
               
               Conread position:740-941
               
               
               Cow position:chrX:23359083-23358889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:740-948
               
               
               Cow position:chrX:33020465-33020674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):200, 0

               
               
               Conread position:740-949
               
               
               Cow position:chrX:2314591-2314382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:740-959
               
               
               Cow position:chrX:32866903-32867115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:741-949
               
               
               Cow position:chrX:46909844-46910044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):27, 35

               
               
               Conread position:742-956
               
               
               Cow position:chrX:37749953-37749751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):26, 37

               
               
               Conread position:742-957
               
               
               Cow position:chrX:8642078-8642289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:745-950
               
               
               Cow position:chrX:18439029-18439234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:747-949
               
               
               Cow position:chrX:17498357-17498559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:749-958
               
               
               Cow position:chrX:30958766-30958976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):41, 8

               
               
               Conread position:751-950
               
               
               Cow position:chrX:31250856-31250657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:757-941
               
               
               Cow position:chrX:23471821-23471640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:757-941
               
               
               Cow position:chrX:46068714-46068536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:770-959
               
               
               Cow position:chrX:41010956-41011136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:771-941
               
               
               Cow position:chrX:6480537-6480367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:773-929
               
               
               Cow position:chrX:31986513-31986356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):22, 82

               
               
               Conread position:773-930
               
               
               Cow position:chrX:46533244-46533087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:773-933
               
               
               Cow position:chrX:10237852-10237693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:773-936
               
               
               Cow position:chrX:15100044-15100201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):68, 89

               
               
               Conread position:773-936
               
               
               Cow position:chrX:45759732-45759892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):122, 88

               
               
               Conread position:773-937
               
               
               Cow position:chrX:11653831-11653991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:773-941
               
               
               Cow position:chrX:16556156-16555995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:773-941
               
               
               Cow position:chrX:42875273-42875437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:773-949
               
               
               Cow position:chrX:597413-597242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:773-949
               
               
               Cow position:chrX:5915249-5915429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:773-951
               
               
               Cow position:chrX:32877314-32877141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:773-958
               
               
               Cow position:chrX:11454247-11454418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:773-959
               
               
               Cow position:chrX:26882019-26881834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):166, 0

               
               
               Conread position:773-959
               
               
               Cow position:chrX:41199285-41199469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):35, 87

               
               
               Conread position:774-936
               
               
               Cow position:chrX:35681629-35681790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):135, 76

               
               
               Conread position:774-939
               
               
               Cow position:chrX:22552917-22552753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:774-940
               
               
               Cow position:chrX:23497629-23497470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:774-941
               
               
               Cow position:chrX:1960363-1960197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:774-941
               
               
               Cow position:chrX:27270437-27270597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):38, 96

               
               
               Conread position:774-941
               
               
               Cow position:chrX:31983523-31983350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:774-941
               
               
               Cow position:chrX:48822280-48822114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:774-942
               
               
               Cow position:chrX:41858820-41858655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):62, 93

               
               
               Conread position:774-949
               
               
               Cow position:chrX:37867494-37867669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:774-950
               
               
               Cow position:chrX:37752044-37751874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:774-951
               
               
               Cow position:chrX:11589305-11589129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:774-951
               
               
               Cow position:chrX:44995560-44995739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:774-952
               
               
               Cow position:chrX:16323956-16323776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:774-953
               
               
               Cow position:chrX:8326966-8327141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):165, 0

               
               
               Conread position:774-955
               
               
               Cow position:chrX:41453364-41453545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):170, 83

               
               
               Conread position:774-955
               
               
               Cow position:chrX:44123317-44123492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):166, 75

               
               
               Conread position:774-958
               
               
               Cow position:chrX:34991426-34991606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:774-959
               
               
               Cow position:chrX:8759688-8759869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):56, 24

               
               
               Conread position:774-960
               
               
               Cow position:chrX:37867315-37867501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:775-936
               
               
               Cow position:chrX:40556396-40556240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):57, 98

               
               
               Conread position:775-937
               
               
               Cow position:chrX:34270624-34270785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):134, 105

               
               
               Conread position:775-938
               
               
               Cow position:chrX:13347336-13347494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:775-939
               
               
               Cow position:chrX:28106910-28107072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:775-941
               
               
               Cow position:chrX:42086890-42087054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:775-941
               
               
               Cow position:chrX:42760315-42760481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:775-944
               
               
               Cow position:chrX:16801200-16801036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:775-944
               
               
               Cow position:chrX:19203283-19203114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:775-944
               
               
               Cow position:chrX:47100534-47100363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:775-949
               
               
               Cow position:chrX:29451488-29451309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:775-950
               
               
               Cow position:chrX:39642559-39642391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:775-951
               
               
               Cow position:chrX:51838-51665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:775-951
               
               
               Cow position:chrX:10278933-10279113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):79, 142

               
               
               Conread position:775-951
               
               
               Cow position:chrX:14925335-14925513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):165, 0

               
               
               Conread position:775-955
               
               
               Cow position:chrX:35409815-35409994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:775-959
               
               
               Cow position:chrX:1938077-1938260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):164, 82

               
               
               Conread position:775-959
               
               
               Cow position:chrX:32215291-32215473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):171, 0

               
               
               Conread position:775-959
               
               
               Cow position:chrX:47855044-47855223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:775-960
               
               
               Cow position:chrX:1101620-1101799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):162, 69

               
               
               Conread position:775-960
               
               
               Cow position:chrX:11529406-11529585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:776-951
               
               
               Cow position:chrX:9451409-9451580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):92, 51

               
               
               Conread position:776-958
               
               
               Cow position:chrX:4559797-4559979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:777-949
               
               
               Cow position:chrX:14135743-14135911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):50, 54

               
               
               Conread position:777-950
               
               
               Cow position:chrX:45657878-45657698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:780-939
               
               
               Cow position:chrX:48574289-48574128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:780-941
               
               
               Cow position:chrX:41215390-41215551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:780-951
               
               
               Cow position:chrX:45044520-45044692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:780-960
               
               
               Cow position:chrX:41435481-41435294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:781-944
               
               
               Cow position:chrX:11674178-11674343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:782-933
               
               
               Cow position:chrX:11813143-11813294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:782-944
               
               
               Cow position:chrX:30789461-30789298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:782-945
               
               
               Cow position:chrX:33678403-33678238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:782-950
               
               
               Cow position:chrX:34398714-34398546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:782-955
               
               
               Cow position:chrX:10415183-10415009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):157, 0

               
               
               Conread position:782-958
               
               
               Cow position:chrX:19000196-19000372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:782-959
               
               
               Cow position:chrX:14951283-14951107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):59, 91

               
               
               Conread position:783-944
               
               
               Cow position:chrX:41454883-41454722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):122, 127

               
               
               Conread position:784-951
               
               
               Cow position:chrX:16770136-16770303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:784-951
               
               
               Cow position:chrX:34194009-34193842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:787-937
               
               
               Cow position:chrX:4486949-4486800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:787-959
               
               
               Cow position:chrX:42506874-42506700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:789-937
               
               
               Cow position:chrX:28167056-28167203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):111, 69

               
               
               Conread position:790-940
               
               
               Cow position:chrX:11602407-11602260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:790-940
               
               
               Cow position:chrX:37717800-37717949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:790-944
               
               
               Cow position:chrX:34108280-34108127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):50, 58

               
               
               Conread position:790-958
               
               
               Cow position:chrX:30672312-30672139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):68, 124

               
               
               Conread position:791-941
               
               
               Cow position:chrX:31279845-31279699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:791-949
               
               
               Cow position:chrX:11670765-11670923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:792-951
               
               
               Cow position:chrX:17929081-17929236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:793-956
               
               
               Cow position:chrX:42516049-42515886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:797-957
               
               
               Cow position:chrX:19356548-19356710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:798-951
               
               
               Cow position:chrX:1996366-1996213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:800-959
               
               
               Cow position:chrX:876759-876602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:805-959
               
               
               Cow position:chrX:10479842-10479998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:811-951
               
               
               Cow position:chrX:42159040-42159180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:818-951
               
               
               Cow position:chrX:38727032-38726905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):125, 39

               
               
               Conread position:827-955
               
               
               Cow position:chrX:23185223-23185094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:828-950
               
               
               Cow position:chrX:19162015-19161892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:96
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:835-943
               
               
               Cow position:chrX:15534089-15533980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:88
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):64, 0