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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8026N13.3
        

               
Conread position:
               
1-461
               

               
Cow position:
               
chr1:55324003-55323550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 31
               

               
Conread position:
               
1-782
               

               
Cow position:
               
chr1:89740705-89739977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
784
               

               
Alignm identity:
               
568
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
429, 81
               

               
Conread position:
               
1-798
               

               
Cow position:
               
chr1:20828402-20829198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
810
               

               
Alignm identity:
               
595
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 52
               

               
Conread position:
               
1-798
               

               
Cow position:
               
chr1:62925123-62925922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
806
               

               
Alignm identity:
               
590
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 52
               

               
Conread position:
               
2-797
               

               
Cow position:
               
chr1:79637418-79636627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
803
               

               
Alignm identity:
               
591
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
228, 319
               

               
Conread position:
               
2-798
               

               
Cow position:
               
chr1:31366569-31365770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
806
               

               
Alignm identity:
               
586
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 17
               

               
Conread position:
               
2-800
               

               
Cow position:
               
chr1:18244862-18244074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
809
               

               
Alignm identity:
               
603
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
310, 130
               

               
Conread position:
               
3-312
               

               
Cow position:
               
chr1:11863752-11863439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
26, 88
               

               
Conread position:
               
4-797
               

               
Cow position:
               
chr1:88130279-88131079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
807
               

               
Alignm identity:
               
582
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
466, 8
               

               
Conread position:
               
5-270
               

               
Cow position:
               
chr1:72079998-72080259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
5-329
               

               
Cow position:
               
chr1:73071501-73071178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
245, 0
               

               
Conread position:
               
5-601
               

               
Cow position:
               
chr1:69922947-69922354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 200
               

               
Conread position:
               
5-630
               

               
Cow position:
               
chr1:25549580-25550197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
627
               

               
Alignm identity:
               
443
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
571, 10
               

               
Conread position:
               
5-777
               

               
Cow position:
               
chr1:63606267-63605494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
776
               

               
Alignm identity:
               
567
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 37
               

               
Conread position:
               
5-797
               

               
Cow position:
               
chr1:79336278-79335496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
796
               

               
Alignm identity:
               
581
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 37
               

               
Conread position:
               
5-801
               

               
Cow position:
               
chr1:84987416-84986642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
813
               

               
Alignm identity:
               
503
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
37, 26
               

               
Conread position:
               
5-803
               

               
Cow position:
               
chr1:42735973-42736767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
802
               

               
Alignm identity:
               
577
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
572, 435
               

               
Conread position:
               
5-803
               

               
Cow position:
               
chr1:76546022-76545223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
807
               

               
Alignm identity:
               
584
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
481, 36
               

               
Conread position:
               
5-803
               

               
Cow position:
               
chr1:76623428-76622642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
802
               

               
Alignm identity:
               
579
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
574, 36
               

               
Conread position:
               
12-588
               

               
Cow position:
               
chr1:62806278-62805707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
565, 199
               

               
Conread position:
               
12-801
               

               
Cow position:
               
chr1:72187347-72186565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
793
               

               
Alignm identity:
               
579
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 18
               

               
Conread position:
               
17-757
               

               
Cow position:
               
chr1:102548733-102549513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
792
               

               
Alignm identity:
               
542
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 13
               

               
Conread position:
               
18-798
               

               
Cow position:
               
chr1:17942285-17941479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
813
               

               
Alignm identity:
               
543
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 665
               

               
Conread position:
               
21-798
               

               
Cow position:
               
chr1:39543303-39544078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
780
               

               
Alignm identity:
               
580
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
556, 451
               

               
Conread position:
               
22-298
               

               
Cow position:
               
chr1:30284059-30283794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
22-306
               

               
Cow position:
               
chr1:97560252-97560534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
193, 49
               

               
Conread position:
               
22-327
               

               
Cow position:
               
chr1:58223834-58224133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
104, 190
               

               
Conread position:
               
22-328
               

               
Cow position:
               
chr1:8027609-8027303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
189, 225
               

               
Conread position:
               
22-371
               

               
Cow position:
               
chr1:52172938-52172589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
22-395
               

               
Cow position:
               
chr1:30023657-30023285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 12
               

               
Conread position:
               
22-400
               

               
Cow position:
               
chr1:53198325-53198704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
212, 0
               

               
Conread position:
               
22-427
               

               
Cow position:
               
chr1:87449486-87449891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 83
               

               
Conread position:
               
22-464
               

               
Cow position:
               
chr1:31395956-31396388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 0
               

               
Conread position:
               
22-466
               

               
Cow position:
               
chr1:43019665-43020100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 28
               

               
Conread position:
               
22-566
               

               
Cow position:
               
chr1:6708557-6708019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 118
               

               
Conread position:
               
22-672
               

               
Cow position:
               
chr1:79921194-79920544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
653
               

               
Alignm identity:
               
470
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 205
               

               
Conread position:
               
22-788
               

               
Cow position:
               
chr1:56489380-56490139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
769
               

               
Alignm identity:
               
568
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
415, 189
               

               
Conread position:
               
22-793
               

               
Cow position:
               
chr1:67286051-67286789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
776
               

               
Alignm identity:
               
543
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
482, 52
               

               
Conread position:
               
22-797
               

               
Cow position:
               
chr1:33850793-33851585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
797
               

               
Alignm identity:
               
580
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 54
               

               
Conread position:
               
22-797
               

               
Cow position:
               
chr1:56162864-56163635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
780
               

               
Alignm identity:
               
560
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 117
               

               
Conread position:
               
22-797
               

               
Cow position:
               
chr1:79457433-79456664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
778
               

               
Alignm identity:
               
570
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
555, 19
               

               
Conread position:
               
22-797
               

               
Cow position:
               
chr1:80359632-80358872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
780
               

               
Alignm identity:
               
570
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 189
               

               
Conread position:
               
22-798
               

               
Cow position:
               
chr1:8553861-8554637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
778
               

               
Alignm identity:
               
562
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
555, 450
               

               
Conread position:
               
22-798
               

               
Cow position:
               
chr1:11292571-11291797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
779
               

               
Alignm identity:
               
564
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
490, 450
               

               
Conread position:
               
22-798
               

               
Cow position:
               
chr1:13449724-13450515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
798
               

               
Alignm identity:
               
575
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 214
               

               
Conread position:
               
22-798
               

               
Cow position:
               
chr1:17013195-17012430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
778
               

               
Alignm identity:
               
569
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
556, 35
               

               
Conread position:
               
22-798
               

               
Cow position:
               
chr1:17037018-17036248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
779
               

               
Alignm identity:
               
564
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
561, 189
               

               
Conread position:
               
22-798
               

               
Cow position:
               
chr1:18880851-18880084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
779
               

               
Alignm identity:
               
562
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 14
               

               
Conread position:
               
22-798
               

               
Cow position:
               
chr1:21086943-21087722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
787
               

               
Alignm identity:
               
565
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 73
               

               
Conread position:
               
22-798
               

               
Cow position:
               
chr1:40052892-40053664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
779
               

               
Alignm identity:
               
571
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
229, 189
               

               
Conread position:
               
22-798
               

               
Cow position:
               
chr1:40685152-40684382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
779
               

               
Alignm identity:
               
561
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
380, 189
               

               
Conread position:
               
22-798
               

               
Cow position:
               
chr1:56722665-56723463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
802
               

               
Alignm identity:
               
577
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 408
               

               
Conread position:
               
22-798
               

               
Cow position:
               
chr1:59210601-59209830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
778
               

               
Alignm identity:
               
561
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
558, 338
               

               
Conread position:
               
22-798
               

               
Cow position:
               
chr1:61308544-61309311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
779
               

               
Alignm identity:
               
580
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
326, 116
               

               
Conread position:
               
22-798
               

               
Cow position:
               
chr1:82564040-82564812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
778
               

               
Alignm identity:
               
570
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
557, 69
               

               
Conread position:
               
22-798
               

               
Cow position:
               
chr1:82652177-82652962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
794
               

               
Alignm identity:
               
568
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
448, 189
               

               
Conread position:
               
22-798
               

               
Cow position:
               
chr1:86548589-86547826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
778
               

               
Alignm identity:
               
567
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
557, 189
               

               
Conread position:
               
22-798
               

               
Cow position:
               
chr1:89425124-89425882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
778
               

               
Alignm identity:
               
555
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
555, 19
               

               
Conread position:
               
22-798
               

               
Cow position:
               
chr1:91719105-91718330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
782
               

               
Alignm identity:
               
575
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 433
               

               
Conread position:
               
22-798
               

               
Cow position:
               
chr1:91898542-91899305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
781
               

               
Alignm identity:
               
578
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 87
               

               
Conread position:
               
22-801
               

               
Cow position:
               
chr1:71563034-71562262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
785
               

               
Alignm identity:
               
580
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
516, 181
               

               
Conread position:
               
23-268
               

               
Cow position:
               
chr1:94659411-94659656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
174, 181
               

               
Conread position:
               
23-510
               

               
Cow position:
               
chr1:13253897-13253418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 183
               

               
Conread position:
               
23-784
               

               
Cow position:
               
chr1:33550457-33551212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
763
               

               
Alignm identity:
               
564
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
554, 309
               

               
Conread position:
               
23-790
               

               
Cow position:
               
chr1:76753115-76752353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
770
               

               
Alignm identity:
               
564
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 188
               

               
Conread position:
               
23-793
               

               
Cow position:
               
chr1:28872611-28873377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
772
               

               
Alignm identity:
               
573
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
554, 449
               

               
Conread position:
               
23-797
               

               
Cow position:
               
chr1:3386472-3385712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
777
               

               
Alignm identity:
               
560
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
554, 298
               

               
Conread position:
               
23-797
               

               
Cow position:
               
chr1:49974654-49973882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
778
               

               
Alignm identity:
               
566
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
367, 218
               

               
Conread position:
               
23-797
               

               
Cow position:
               
chr1:57367598-57366824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
777
               

               
Alignm identity:
               
553
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
560, 372
               

               
Conread position:
               
23-797
               

               
Cow position:
               
chr1:57567483-57568260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
779
               

               
Alignm identity:
               
567
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 450
               

               
Conread position:
               
23-797
               

               
Cow position:
               
chr1:62245116-62244339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
781
               

               
Alignm identity:
               
573
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 259
               

               
Conread position:
               
23-797
               

               
Cow position:
               
chr1:85781246-85780472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
778
               

               
Alignm identity:
               
559
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
212, 452
               

               
Conread position:
               
23-797
               

               
Cow position:
               
chr1:86699686-86698909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
780
               

               
Alignm identity:
               
563
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 328
               

               
Conread position:
               
23-798
               

               
Cow position:
               
chr1:22000418-21999649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
778
               

               
Alignm identity:
               
570
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
297, 83
               

               
Conread position:
               
23-803
               

               
Cow position:
               
chr1:56194397-56193616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
785
               

               
Alignm identity:
               
570
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 223
               

               
Conread position:
               
23-803
               

               
Cow position:
               
chr1:72980816-72981580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
782
               

               
Alignm identity:
               
566
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
554, 122
               

               
Conread position:
               
24-574
               

               
Cow position:
               
chr1:40513953-40513418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 76
               

               
Conread position:
               
26-779
               

               
Cow position:
               
chr1:84148952-84149708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
782
               

               
Alignm identity:
               
515
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 38
               

               
Conread position:
               
28-798
               

               
Cow position:
               
chr1:57656098-57656852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
774
               

               
Alignm identity:
               
565
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 219
               

               
Conread position:
               
29-340
               

               
Cow position:
               
chr1:99995553-99995242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
29-355
               

               
Cow position:
               
chr1:88759106-88759433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
29-798
               

               
Cow position:
               
chr1:85791238-85791995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
772
               

               
Alignm identity:
               
569
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 62
               

               
Conread position:
               
30-488
               

               
Cow position:
               
chr1:85881293-85881741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
433, 11
               

               
Conread position:
               
30-781
               

               
Cow position:
               
chr1:55276938-55276193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
754
               

               
Alignm identity:
               
563
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
547, 181
               

               
Conread position:
               
30-797
               

               
Cow position:
               
chr1:69402535-69403288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
772
               

               
Alignm identity:
               
558
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 11
               

               
Conread position:
               
31-647
               

               
Cow position:
               
chr1:77163324-77163922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
623
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 10
               

               
Conread position:
               
33-372
               

               
Cow position:
               
chr1:76552174-76552503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
9, 49
               

               
Conread position:
               
36-634
               

               
Cow position:
               
chr1:29950751-29950174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
606
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 21
               

               
Conread position:
               
37-797
               

               
Cow position:
               
chr1:88682839-88682115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
771
               

               
Alignm identity:
               
484
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
13, 27
               

               
Conread position:
               
37-798
               

               
Cow position:
               
chr1:97227155-97226403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
766
               

               
Alignm identity:
               
564
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 315
               

               
Conread position:
               
38-511
               

               
Cow position:
               
chr1:5501527-5501996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
38-715
               

               
Cow position:
               
chr1:86608755-86609429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
697
               

               
Alignm identity:
               
470
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 5
               

               
Conread position:
               
38-797
               

               
Cow position:
               
chr1:58335385-58336143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
763
               

               
Alignm identity:
               
553
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 207
               

               
Conread position:
               
38-797
               

               
Cow position:
               
chr1:93854070-93854829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
763
               

               
Alignm identity:
               
564
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 61
               

               
Conread position:
               
41-766
               

               
Cow position:
               
chr1:55775710-55776413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
727
               

               
Alignm identity:
               
527
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 44
               

               
Conread position:
               
41-797
               

               
Cow position:
               
chr1:1461773-1461024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
761
               

               
Alignm identity:
               
555
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
201, 48
               

               
Conread position:
               
41-798
               

               
Cow position:
               
chr1:8824618-8825358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
759
               

               
Alignm identity:
               
551
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
538, 42
               

               
Conread position:
               
41-801
               

               
Cow position:
               
chr1:100597830-100597060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
773
               

               
Alignm identity:
               
556
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
307, 291
               

               
Conread position:
               
41-803
               

               
Cow position:
               
chr1:102435476-102434724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
767
               

               
Alignm identity:
               
550
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
274, 418
               

               
Conread position:
               
43-797
               

               
Cow position:
               
chr1:25180477-25179722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
757
               

               
Alignm identity:
               
557
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
536, 430
               

               
Conread position:
               
47-677
               

               
Cow position:
               
chr1:101004909-101004287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
640
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
83, 16
               

               
Conread position:
               
56-510
               

               
Cow position:
               
chr1:67313496-67313939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
44, 132
               

               
Conread position:
               
56-801
               

               
Cow position:
               
chr1:63501027-63501763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
753
               

               
Alignm identity:
               
516
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 168
               

               
Conread position:
               
56-803
               

               
Cow position:
               
chr1:59933115-59933851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
762
               

               
Alignm identity:
               
515
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 11
               

               
Conread position:
               
58-801
               

               
Cow position:
               
chr1:85748495-85747793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
749
               

               
Alignm identity:
               
473
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
158, 5
               

               
Conread position:
               
60-799
               

               
Cow position:
               
chr1:61738914-61738210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
744
               

               
Alignm identity:
               
487
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 106
               

               
Conread position:
               
61-445
               

               
Cow position:
               
chr1:68219276-68218887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
155, 0
               

               
Conread position:
               
62-371
               

               
Cow position:
               
chr1:72119738-72120034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
62-648
               

               
Cow position:
               
chr1:85533823-85533256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 18
               

               
Conread position:
               
62-800
               

               
Cow position:
               
chr1:79552039-79552758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
752
               

               
Alignm identity:
               
452
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
44, 16
               

               
Conread position:
               
64-674
               

               
Cow position:
               
chr1:30767099-30766502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
615
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
21, 38
               

               
Conread position:
               
66-778
               

               
Cow position:
               
chr1:88396676-88395979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
725
               

               
Alignm identity:
               
464
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 78
               

               
Conread position:
               
67-400
               

               
Cow position:
               
chr1:20988347-20988670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
76, 81
               

               
Conread position:
               
67-403
               

               
Cow position:
               
chr1:67902847-67902508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
44, 35
               

               
Conread position:
               
67-789
               

               
Cow position:
               
chr1:18014612-18013888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
733
               

               
Alignm identity:
               
473
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 192
               

               
Conread position:
               
67-799
               

               
Cow position:
               
chr1:19993096-19992383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
735
               

               
Alignm identity:
               
476
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 201
               

               
Conread position:
               
67-801
               

               
Cow position:
               
chr1:62854251-62853529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
744
               

               
Alignm identity:
               
555
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 33
               

               
Conread position:
               
67-801
               

               
Cow position:
               
chr1:99021374-99020651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
744
               

               
Alignm identity:
               
482
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
324, 107
               

               
Conread position:
               
68-765
               

               
Cow position:
               
chr1:98661710-98661035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
709
               

               
Alignm identity:
               
469
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 31
               

               
Conread position:
               
72-798
               

               
Cow position:
               
chr1:33711641-33712372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
736
               

               
Alignm identity:
               
550
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 136
               

               
Conread position:
               
72-798
               

               
Cow position:
               
chr1:52233517-52232807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
550
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 66
               

               
Conread position:
               
72-798
               

               
Cow position:
               
chr1:101149424-101150141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
732
               

               
Alignm identity:
               
556
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 38
               

               
Conread position:
               
75-801
               

               
Cow position:
               
chr1:31331194-31330482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
735
               

               
Alignm identity:
               
474
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 34
               

               
Conread position:
               
75-801
               

               
Cow position:
               
chr1:34688937-34689652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
735
               

               
Alignm identity:
               
531
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 132
               

               
Conread position:
               
78-380
               

               
Cow position:
               
chr1:28722380-28722683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
8, 23
               

               
Conread position:
               
78-533
               

               
Cow position:
               
chr1:76703777-76703339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 0
               

               
Conread position:
               
78-746
               

               
Cow position:
               
chr1:69287965-69287313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
675
               

               
Alignm identity:
               
451
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 16
               

               
Conread position:
               
78-797
               

               
Cow position:
               
chr1:68607959-68607235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
726
               

               
Alignm identity:
               
533
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
371, 397
               

               
Conread position:
               
79-648
               

               
Cow position:
               
chr1:28276241-28276796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
575
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
391, 25
               

               
Conread position:
               
79-801
               

               
Cow position:
               
chr1:30027941-30027240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
729
               

               
Alignm identity:
               
516
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 35
               

               
Conread position:
               
81-739
               

               
Cow position:
               
chr1:21357003-21356391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
664
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
18, 128
               

               
Conread position:
               
82-357
               

               
Cow position:
               
chr1:29904464-29904199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
151, 97
               

               
Conread position:
               
82-801
               

               
Cow position:
               
chr1:80556444-80555772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
722
               

               
Alignm identity:
               
461
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 17
               

               
Conread position:
               
85-380
               

               
Cow position:
               
chr1:8330420-8330132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
147, 0
               

               
Conread position:
               
85-801
               

               
Cow position:
               
chr1:35156255-35155563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
728
               

               
Alignm identity:
               
452
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
100, 14
               

               
Conread position:
               
92-608
               

               
Cow position:
               
chr1:87968951-87969469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 51
               

               
Conread position:
               
92-801
               

               
Cow position:
               
chr1:5318371-5319054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
713
               

               
Alignm identity:
               
478
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 60
               

               
Conread position:
               
93-422
               

               
Cow position:
               
chr1:102555696-102556018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
122, 129
               

               
Conread position:
               
94-347
               

               
Cow position:
               
chr1:37420366-37420116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 0
               

               
Conread position:
               
94-788
               

               
Cow position:
               
chr1:89771071-89770386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
697
               

               
Alignm identity:
               
531
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 43
               

               
Conread position:
               
97-798
               

               
Cow position:
               
chr1:13645330-13646020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
712
               

               
Alignm identity:
               
523
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 317
               

               
Conread position:
               
97-798
               

               
Cow position:
               
chr1:28801818-28801092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
728
               

               
Alignm identity:
               
548
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 381
               

               
Conread position:
               
97-798
               

               
Cow position:
               
chr1:82919041-82918356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
703
               

               
Alignm identity:
               
538
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
482, 114
               

               
Conread position:
               
97-798
               

               
Cow position:
               
chr1:88634986-88635679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
703
               

               
Alignm identity:
               
531
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
482, 153
               

               
Conread position:
               
97-801
               

               
Cow position:
               
chr1:87244407-87245122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
723
               

               
Alignm identity:
               
538
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
435, 240
               

               
Conread position:
               
100-714
               

               
Cow position:
               
chr1:30058164-30058763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
625
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 62
               

               
Conread position:
               
100-757
               

               
Cow position:
               
chr1:21476020-21476659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
664
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
162, 97
               

               
Conread position:
               
100-786
               

               
Cow position:
               
chr1:56856156-56856846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
704
               

               
Alignm identity:
               
454
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 27
               

               
Conread position:
               
100-801
               

               
Cow position:
               
chr1:66686921-66686227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
714
               

               
Alignm identity:
               
466
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 55
               

               
Conread position:
               
102-760
               

               
Cow position:
               
chr1:72942429-72943089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
682
               

               
Alignm identity:
               
434
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
41, 19
               

               
Conread position:
               
102-797
               

               
Cow position:
               
chr1:30574741-30574071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
699
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 63
               

               
Conread position:
               
102-798
               

               
Cow position:
               
chr1:101858369-101857678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
700
               

               
Alignm identity:
               
532
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 198
               

               
Conread position:
               
105-798
               

               
Cow position:
               
chr1:69766088-69766771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
695
               

               
Alignm identity:
               
530
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
474, 106
               

               
Conread position:
               
106-798
               

               
Cow position:
               
chr1:45097342-45098003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
695
               

               
Alignm identity:
               
507
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 7
               

               
Conread position:
               
108-451
               

               
Cow position:
               
chr1:39686108-39686445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
35, 42
               

               
Conread position:
               
108-524
               

               
Cow position:
               
chr1:33134040-33133623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
26, 36
               

               
Conread position:
               
108-641
               

               
Cow position:
               
chr1:85775436-85775946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
64, 38
               

               
Conread position:
               
108-798
               

               
Cow position:
               
chr1:38414431-38415106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
693
               

               
Alignm identity:
               
541
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
431, 54
               

               
Conread position:
               
110-798
               

               
Cow position:
               
chr1:67835510-67834832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
693
               

               
Alignm identity:
               
518
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 29
               

               
Conread position:
               
115-797
               

               
Cow position:
               
chr1:18406572-18405890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
692
               

               
Alignm identity:
               
510
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 321
               

               
Conread position:
               
118-513
               

               
Cow position:
               
chr1:89809997-89809599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 229
               

               
Conread position:
               
118-553
               

               
Cow position:
               
chr1:40953340-40953762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 170
               

               
Conread position:
               
118-798
               

               
Cow position:
               
chr1:42290033-42290691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
685
               

               
Alignm identity:
               
524
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 66
               

               
Conread position:
               
118-798
               

               
Cow position:
               
chr1:69536532-69537205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
690
               

               
Alignm identity:
               
507
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 214
               

               
Conread position:
               
118-798
               

               
Cow position:
               
chr1:72656612-72657295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
689
               

               
Alignm identity:
               
516
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
280, 132
               

               
Conread position:
               
118-798
               

               
Cow position:
               
chr1:89900072-89899397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
683
               

               
Alignm identity:
               
525
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
410, 167
               

               
Conread position:
               
118-801
               

               
Cow position:
               
chr1:97123462-97124119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
686
               

               
Alignm identity:
               
500
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 87
               

               
Conread position:
               
122-801
               

               
Cow position:
               
chr1:25887498-25886851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
686
               

               
Alignm identity:
               
477
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 46
               

               
Conread position:
               
123-801
               

               
Cow position:
               
chr1:52918973-52918317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
683
               

               
Alignm identity:
               
473
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
239, 95
               

               
Conread position:
               
125-505
               

               
Cow position:
               
chr1:38387983-38387633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
362, 13
               

               
Conread position:
               
127-605
               

               
Cow position:
               
chr1:59674127-59674594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 115
               

               
Conread position:
               
136-534
               

               
Cow position:
               
chr1:78359845-78360226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
19, 12
               

               
Conread position:
               
137-798
               

               
Cow position:
               
chr1:87207775-87207120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
675
               

               
Alignm identity:
               
506
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 212
               

               
Conread position:
               
141-732
               

               
Cow position:
               
chr1:33387947-33388535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
611
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 26
               

               
Conread position:
               
146-729
               

               
Cow position:
               
chr1:33895335-33895920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
588
               

               
Alignm identity:
               
437
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 87
               

               
Conread position:
               
162-799
               

               
Cow position:
               
chr1:13879810-13880429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
643
               

               
Alignm identity:
               
452
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 84
               

               
Conread position:
               
162-801
               

               
Cow position:
               
chr1:74280504-74279873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
655
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
39, 43
               

               
Conread position:
               
167-797
               

               
Cow position:
               
chr1:56144652-56144030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
635
               

               
Alignm identity:
               
475
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 38
               

               
Conread position:
               
173-798
               

               
Cow position:
               
chr1:40307755-40308366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
630
               

               
Alignm identity:
               
474
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 31
               

               
Conread position:
               
191-801
               

               
Cow position:
               
chr1:38385572-38384992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
615
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
307, 52
               

               
Conread position:
               
212-803
               

               
Cow position:
               
chr1:52359556-52358965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
450
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 264
               

               
Conread position:
               
215-801
               

               
Cow position:
               
chr1:53046057-53045477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 262
               

               
Conread position:
               
221-423
               

               
Cow position:
               
chr1:99349286-99349084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
225-789
               

               
Cow position:
               
chr1:99374709-99375251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 26
               

               
Conread position:
               
226-409
               

               
Cow position:
               
chr1:29361745-29361928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
227-797
               

               
Cow position:
               
chr1:78289619-78290172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
573
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
356, 246
               

               
Conread position:
               
230-775
               

               
Cow position:
               
chr1:54366076-54365543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
349, 66
               

               
Conread position:
               
237-798
               

               
Cow position:
               
chr1:30283788-30283234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
342, 110
               

               
Conread position:
               
240-503
               

               
Cow position:
               
chr1:22864166-22863905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
240-705
               

               
Cow position:
               
chr1:98783805-98784265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 168
               

               
Conread position:
               
254-801
               

               
Cow position:
               
chr1:82902724-82903260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 123
               

               
Conread position:
               
260-624
               

               
Cow position:
               
chr1:82407569-82407211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
317, 65
               

               
Conread position:
               
266-801
               

               
Cow position:
               
chr1:72136420-72136951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
313, 58
               

               
Conread position:
               
275-798
               

               
Cow position:
               
chr1:72080558-72081087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
303, 198
               

               
Conread position:
               
276-801
               

               
Cow position:
               
chr1:77112651-77112139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
302, 62
               

               
Conread position:
               
277-398
               

               
Cow position:
               
chr1:101725849-101725970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
278-801
               

               
Cow position:
               
chr1:79109086-79109583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
301, 52
               

               
Conread position:
               
281-801
               

               
Cow position:
               
chr1:82355520-82356026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 193
               

               
Conread position:
               
287-797
               

               
Cow position:
               
chr1:91893313-91892815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
298, 73
               

               
Conread position:
               
291-664
               

               
Cow position:
               
chr1:7144634-7144270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
289, 26
               

               
Conread position:
               
296-798
               

               
Cow position:
               
chr1:28710723-28711225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
283, 177
               

               
Conread position:
               
305-801
               

               
Cow position:
               
chr1:73009616-73010087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
26, 75
               

               
Conread position:
               
310-618
               

               
Cow position:
               
chr1:15347764-15347456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
267, 162
               

               
Conread position:
               
311-710
               

               
Cow position:
               
chr1:32836465-32836861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
123, 113
               

               
Conread position:
               
312-777
               

               
Cow position:
               
chr1:31126103-31125645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
89, 17
               

               
Conread position:
               
313-796
               

               
Cow position:
               
chr1:11863412-11862952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 84
               

               
Conread position:
               
317-700
               

               
Cow position:
               
chr1:23050668-23051047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
244, 121
               

               
Conread position:
               
318-504
               

               
Cow position:
               
chr1:79885003-79884816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
22, 156
               

               
Conread position:
               
318-804
               

               
Cow position:
               
chr1:37419916-37419458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
259, 26
               

               
Conread position:
               
319-708
               

               
Cow position:
               
chr1:44101913-44101532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
229, 15
               

               
Conread position:
               
322-785
               

               
Cow position:
               
chr1:99910784-99911254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 151
               

               
Conread position:
               
325-801
               

               
Cow position:
               
chr1:39482145-39481671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 103
               

               
Conread position:
               
330-763
               

               
Cow position:
               
chr1:15025739-15026159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
61, 17
               

               
Conread position:
               
330-782
               

               
Cow position:
               
chr1:12062357-12061904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 144
               

               
Conread position:
               
346-801
               

               
Cow position:
               
chr1:36919764-36920231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
84, 94
               

               
Conread position:
               
347-774
               

               
Cow position:
               
chr1:48245669-48246098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
232, 126
               

               
Conread position:
               
360-797
               

               
Cow position:
               
chr1:73071186-73070748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 113
               

               
Conread position:
               
388-797
               

               
Cow position:
               
chr1:82924278-82923871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 11
               

               
Conread position:
               
394-798
               

               
Cow position:
               
chr1:32342170-32341771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 80
               

               
Conread position:
               
395-798
               

               
Cow position:
               
chr1:28722778-28723182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 78
               

               
Conread position:
               
395-798
               

               
Cow position:
               
chr1:60339211-60339614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 78
               

               
Conread position:
               
397-798
               

               
Cow position:
               
chr1:29362204-29362605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 76
               

               
Conread position:
               
399-726
               

               
Cow position:
               
chr1:77117681-77117350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 74
               

               
Conread position:
               
410-734
               

               
Cow position:
               
chr1:20988873-20989200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 69
               

               
Conread position:
               
410-801
               

               
Cow position:
               
chr1:67901997-67901618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 44
               

               
Conread position:
               
410-803
               

               
Cow position:
               
chr1:78920023-78920416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
10, 17
               

               
Conread position:
               
412-803
               

               
Cow position:
               
chr1:94659615-94659997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 41
               

               
Conread position:
               
416-801
               

               
Cow position:
               
chr1:46835452-46835834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 53
               

               
Conread position:
               
441-801
               

               
Cow position:
               
chr1:87749989-87750332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
140, 32
               

               
Conread position:
               
442-786
               

               
Cow position:
               
chr1:100274809-100274472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
91, 31
               

               
Conread position:
               
443-797
               

               
Cow position:
               
chr1:58884114-58883759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 30
               

               
Conread position:
               
443-798
               

               
Cow position:
               
chr1:40574169-40574522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 30
               

               
Conread position:
               
446-801
               

               
Cow position:
               
chr1:89479278-89479616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 27
               

               
Conread position:
               
449-779
               

               
Cow position:
               
chr1:97056155-97055831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
16, 27
               

               
Conread position:
               
449-795
               

               
Cow position:
               
chr1:88270635-88270307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
130, 6
               

               
Conread position:
               
451-801
               

               
Cow position:
               
chr1:99349073-99348726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 10
               

               
Conread position:
               
454-665
               

               
Cow position:
               
chr1:38419334-38419554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
76, 65
               

               
Conread position:
               
458-798
               

               
Cow position:
               
chr1:31396659-31396999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 15
               

               
Conread position:
               
472-701
               

               
Cow position:
               
chr1:81927964-81927724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
58, 35
               

               
Conread position:
               
478-801
               

               
Cow position:
               
chr1:55323067-55322746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 30
               

               
Conread position:
               
482-793
               

               
Cow position:
               
chr1:85881995-85882305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 139
               

               
Conread position:
               
492-790
               

               
Cow position:
               
chr1:55157570-55157286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
197, 116
               

               
Conread position:
               
498-783
               

               
Cow position:
               
chr1:32661402-32661683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
79, 54
               

               
Conread position:
               
502-785
               

               
Cow position:
               
chr1:88737468-88737752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
43, 20
               

               
Conread position:
               
504-785
               

               
Cow position:
               
chr1:89258066-89257787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
37, 24
               

               
Conread position:
               
516-798
               

               
Cow position:
               
chr1:82913118-82912835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
530-794
               

               
Cow position:
               
chr1:95239409-95239674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
532-714
               

               
Cow position:
               
chr1:38387640-38387460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
47, 165
               

               
Conread position:
               
533-797
               

               
Cow position:
               
chr1:5501976-5502242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
545-782
               

               
Cow position:
               
chr1:97044645-97044418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
33, 20
               

               
Conread position:
               
547-701
               

               
Cow position:
               
chr1:60280456-60280301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
548-801
               

               
Cow position:
               
chr1:77655758-77656005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
29, 18
               

               
Conread position:
               
550-801
               

               
Cow position:
               
chr1:98865093-98864842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
29, 216
               

               
Conread position:
               
551-732
               

               
Cow position:
               
chr1:45023527-45023347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
29, 99
               

               
Conread position:
               
552-801
               

               
Cow position:
               
chr1:102556116-102556358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
27, 46
               

               
Conread position:
               
555-769
               

               
Cow position:
               
chr1:40953967-40954181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
578-801
               

               
Cow position:
               
chr1:44138256-44138037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
579-799
               

               
Cow position:
               
chr1:38396318-38396539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
48, 116
               

               
Conread position:
               
594-799
               

               
Cow position:
               
chr1:24650861-24651065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
33, 60
               

               
Conread position:
               
604-797
               

               
Cow position:
               
chr1:69922324-69922130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
190, 0
               

               
Conread position:
               
604-804
               

               
Cow position:
               
chr1:40513264-40513067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
607-803
               

               
Cow position:
               
chr1:65386445-65386643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
102, 110
               

               
Conread position:
               
615-801
               

               
Cow position:
               
chr1:69060621-69060797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
183, 49
               

               
Conread position:
               
623-798
               

               
Cow position:
               
chr1:9382411-9382239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
628-801
               

               
Cow position:
               
chr1:21720027-21720200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
628-801
               

               
Cow position:
               
chr1:94253056-94253230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
635-798
               

               
Cow position:
               
chr1:59674595-59674758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
636-797
               

               
Cow position:
               
chr1:67314667-67314830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
11, 112
               

               
Conread position:
               
639-798
               

               
Cow position:
               
chr1:18027620-18027461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
639-798
               

               
Cow position:
               
chr1:53198699-53198858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
641-800
               

               
Cow position:
               
chr1:42870091-42869932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
642-801
               

               
Cow position:
               
chr1:72039196-72039037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
653-801
               

               
Cow position:
               
chr1:87516120-87515972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
674-797
               

               
Cow position:
               
chr1:30534840-30534716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
675-789
               

               
Cow position:
               
chr1:5355312-5355426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
682-798
               

               
Cow position:
               
chr1:57424646-57424530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
2-281
               

               
Cow position:
               
chr10:54127012-54127275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
2-485
               

               
Cow position:
               
chr10:10581205-10581691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 53
               

               
Conread position:
               
2-611
               

               
Cow position:
               
chr10:19839691-19840298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
620
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 84
               

               
Conread position:
               
2-615
               

               
Cow position:
               
chr10:60489210-60489803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
617
               

               
Alignm identity:
               
439
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 68
               

               
Conread position:
               
2-800
               

               
Cow position:
               
chr10:24299304-24298527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
804
               

               
Alignm identity:
               
584
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 41
               

               
Conread position:
               
2-801
               

               
Cow position:
               
chr10:38546672-38545890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
803
               

               
Alignm identity:
               
566
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
577, 22
               

               
Conread position:
               
2-804
               

               
Cow position:
               
chr10:46190926-46191695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
808
               

               
Alignm identity:
               
561
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 51
               

               
Conread position:
               
4-514
               

               
Cow position:
               
chr10:37060469-37060971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
324, 0
               

               
Conread position:
               
12-436
               

               
Cow position:
               
chr10:21382261-21382687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
54, 5
               

               
Conread position:
               
12-804
               

               
Cow position:
               
chr10:21901642-21900879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
808
               

               
Alignm identity:
               
519
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 18
               

               
Conread position:
               
20-798
               

               
Cow position:
               
chr10:39817789-39817031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
781
               

               
Alignm identity:
               
569
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
510, 84
               

               
Conread position:
               
21-590
               

               
Cow position:
               
chr10:29847055-29846485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 452
               

               
Conread position:
               
21-797
               

               
Cow position:
               
chr10:38345808-38345030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
782
               

               
Alignm identity:
               
564
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 22
               

               
Conread position:
               
21-798
               

               
Cow position:
               
chr10:4192657-4191894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
786
               

               
Alignm identity:
               
567
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 301
               

               
Conread position:
               
21-798
               

               
Cow position:
               
chr10:47906338-47907110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
780
               

               
Alignm identity:
               
570
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 155
               

               
Conread position:
               
22-373
               

               
Cow position:
               
chr10:21466812-21467163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
189, 214
               

               
Conread position:
               
22-466
               

               
Cow position:
               
chr10:55092671-55093111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 86
               

               
Conread position:
               
22-797
               

               
Cow position:
               
chr10:51953045-51952290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
778
               

               
Alignm identity:
               
560
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
557, 320
               

               
Conread position:
               
22-798
               

               
Cow position:
               
chr10:281063-280289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
778
               

               
Alignm identity:
               
566
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
551, 434
               

               
Conread position:
               
22-798
               

               
Cow position:
               
chr10:14803392-14804168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
781
               

               
Alignm identity:
               
580
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
441, 203
               

               
Conread position:
               
22-798
               

               
Cow position:
               
chr10:21401108-21400339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
778
               

               
Alignm identity:
               
575
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
557, 69
               

               
Conread position:
               
22-798
               

               
Cow position:
               
chr10:21741192-21740420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
779
               

               
Alignm identity:
               
567
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 131
               

               
Conread position:
               
22-798
               

               
Cow position:
               
chr10:32577858-32578620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
780
               

               
Alignm identity:
               
571
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 325
               

               
Conread position:
               
22-798
               

               
Cow position:
               
chr10:39179350-39180115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
778
               

               
Alignm identity:
               
564
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
331, 189
               

               
Conread position:
               
22-798
               

               
Cow position:
               
chr10:41157013-41157779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
778
               

               
Alignm identity:
               
565
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
557, 189
               

               
Conread position:
               
22-798
               

               
Cow position:
               
chr10:41566669-41567434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
780
               

               
Alignm identity:
               
570
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 68
               

               
Conread position:
               
22-798
               

               
Cow position:
               
chr10:41876480-41877250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
779
               

               
Alignm identity:
               
570
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 140
               

               
Conread position:
               
22-800
               

               
Cow position:
               
chr10:11686098-11685337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
780
               

               
Alignm identity:
               
570
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
557, 68
               

               
Conread position:
               
23-763
               

               
Cow position:
               
chr10:38538932-38538196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
746
               

               
Alignm identity:
               
533
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
556, 234
               

               
Conread position:
               
23-784
               

               
Cow position:
               
chr10:62409293-62408539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
763
               

               
Alignm identity:
               
553
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
554, 30
               

               
Conread position:
               
23-797
               

               
Cow position:
               
chr10:22100801-22101562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
777
               

               
Alignm identity:
               
558
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
556, 76
               

               
Conread position:
               
23-797
               

               
Cow position:
               
chr10:32650299-32651065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
777
               

               
Alignm identity:
               
584
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
556, 188
               

               
Conread position:
               
23-797
               

               
Cow position:
               
chr10:39041747-39040970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
781
               

               
Alignm identity:
               
564
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
450, 353
               

               
Conread position:
               
23-797
               

               
Cow position:
               
chr10:57990405-57989662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
776
               

               
Alignm identity:
               
556
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
771, 78
               

               
Conread position:
               
23-801
               

               
Cow position:
               
chr10:37769384-37770158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
782
               

               
Alignm identity:
               
571
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
554, 83
               

               
Conread position:
               
23-803
               

               
Cow position:
               
chr10:8289527-8290317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
798
               

               
Alignm identity:
               
574
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 377
               

               
Conread position:
               
27-337
               

               
Cow position:
               
chr10:58377994-58377700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
39, 25
               

               
Conread position:
               
28-777
               

               
Cow position:
               
chr10:41352193-41351449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
766
               

               
Alignm identity:
               
529
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 25
               

               
Conread position:
               
29-801
               

               
Cow position:
               
chr10:57559983-57559201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
789
               

               
Alignm identity:
               
573
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
303, 221
               

               
Conread position:
               
37-545
               

               
Cow position:
               
chr10:58664150-58664658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
20, 10
               

               
Conread position:
               
38-323
               

               
Cow position:
               
chr10:19715471-19715188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
38-723
               

               
Cow position:
               
chr10:19143766-19143081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
690
               

               
Alignm identity:
               
508
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 206
               

               
Conread position:
               
38-784
               

               
Cow position:
               
chr10:7283106-7282369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
748
               

               
Alignm identity:
               
548
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
539, 68
               

               
Conread position:
               
41-593
               

               
Cow position:
               
chr10:42747679-42748217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
557
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 28
               

               
Conread position:
               
41-797
               

               
Cow position:
               
chr10:123894-124642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
760
               

               
Alignm identity:
               
559
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
298, 170
               

               
Conread position:
               
41-797
               

               
Cow position:
               
chr10:1375113-1375865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
761
               

               
Alignm identity:
               
563
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
538, 97
               

               
Conread position:
               
41-797
               

               
Cow position:
               
chr10:19511190-19511938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
759
               

               
Alignm identity:
               
547
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
538, 27
               

               
Conread position:
               
41-797
               

               
Cow position:
               
chr10:21486495-21487247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
760
               

               
Alignm identity:
               
553
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
536, 41
               

               
Conread position:
               
41-804
               

               
Cow position:
               
chr10:42109310-42110050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
775
               

               
Alignm identity:
               
512
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 28
               

               
Conread position:
               
44-801
               

               
Cow position:
               
chr10:14859567-14860299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
761
               

               
Alignm identity:
               
532
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
533, 32
               

               
Conread position:
               
51-248
               

               
Cow position:
               
chr10:183129-183329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
55-801
               

               
Cow position:
               
chr10:34685487-34686229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
749
               

               
Alignm identity:
               
547
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
522, 63
               

               
Conread position:
               
62-801
               

               
Cow position:
               
chr10:38846977-38847676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
741
               

               
Alignm identity:
               
521
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
520, 28
               

               
Conread position:
               
67-443
               

               
Cow position:
               
chr10:34318651-34318289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
73, 31
               

               
Conread position:
               
67-798
               

               
Cow position:
               
chr10:3543966-3543258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
740
               

               
Alignm identity:
               
500
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
214, 45
               

               
Conread position:
               
69-646
               

               
Cow position:
               
chr10:4499321-4499861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
72-801
               

               
Cow position:
               
chr10:25497960-25498687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
734
               

               
Alignm identity:
               
554
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 181
               

               
Conread position:
               
75-667
               

               
Cow position:
               
chr10:28116824-28116235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
606
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 105
               

               
Conread position:
               
75-672
               

               
Cow position:
               
chr10:54059736-54059150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 33
               

               
Conread position:
               
76-801
               

               
Cow position:
               
chr10:53363600-53364296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
746
               

               
Alignm identity:
               
476
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
9, 44
               

               
Conread position:
               
82-799
               

               
Cow position:
               
chr10:32063766-32064487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
736
               

               
Alignm identity:
               
491
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 142
               

               
Conread position:
               
87-797
               

               
Cow position:
               
chr10:25359024-25359731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
714
               

               
Alignm identity:
               
530
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 46
               

               
Conread position:
               
92-798
               

               
Cow position:
               
chr10:62216234-62216939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
709
               

               
Alignm identity:
               
544
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
487, 152
               

               
Conread position:
               
93-694
               

               
Cow position:
               
chr10:276221-276817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
604
               

               
Alignm identity:
               
461
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 158
               

               
Conread position:
               
93-798
               

               
Cow position:
               
chr10:25565610-25564926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
707
               

               
Alignm identity:
               
523
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
486, 11
               

               
Conread position:
               
94-799
               

               
Cow position:
               
chr10:24978505-24977806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
711
               

               
Alignm identity:
               
486
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 229
               

               
Conread position:
               
97-801
               

               
Cow position:
               
chr10:29695879-29696566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
706
               

               
Alignm identity:
               
534
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
480, 118
               

               
Conread position:
               
100-336
               

               
Cow position:
               
chr10:15862655-15862428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
101-786
               

               
Cow position:
               
chr10:41389909-41389225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
698
               

               
Alignm identity:
               
454
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
370, 61
               

               
Conread position:
               
109-785
               

               
Cow position:
               
chr10:13837994-13838687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
702
               

               
Alignm identity:
               
447
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 128
               

               
Conread position:
               
113-498
               

               
Cow position:
               
chr10:31523502-31523856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
329, 73
               

               
Conread position:
               
115-452
               

               
Cow position:
               
chr10:58596156-58596484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
13, 61
               

               
Conread position:
               
118-801
               

               
Cow position:
               
chr10:62777995-62778683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
690
               

               
Alignm identity:
               
534
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 358
               

               
Conread position:
               
119-794
               

               
Cow position:
               
chr10:10478476-10477808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
695
               

               
Alignm identity:
               
504
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
442, 84
               

               
Conread position:
               
123-392
               

               
Cow position:
               
chr10:49310198-49310463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
215, 36
               

               
Conread position:
               
128-778
               

               
Cow position:
               
chr10:57575291-57575926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
664
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
22, 17
               

               
Conread position:
               
137-458
               

               
Cow position:
               
chr10:61297003-61297319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
137-513
               

               
Cow position:
               
chr10:42628347-42628706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
149-770
               

               
Cow position:
               
chr10:58860995-58860382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
633
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 12
               

               
Conread position:
               
149-772
               

               
Cow position:
               
chr10:21076047-21076662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
627
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 197
               

               
Conread position:
               
160-728
               

               
Cow position:
               
chr10:29633162-29632601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
425, 11
               

               
Conread position:
               
171-780
               

               
Cow position:
               
chr10:16475471-16476071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
614
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 136
               

               
Conread position:
               
188-487
               

               
Cow position:
               
chr10:64303254-64302949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
70, 291
               

               
Conread position:
               
202-546
               

               
Cow position:
               
chr10:55288860-55288521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
195, 51
               

               
Conread position:
               
217-796
               

               
Cow position:
               
chr10:31771856-31771288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
590
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
113, 14
               

               
Conread position:
               
218-366
               

               
Cow position:
               
chr10:50018305-50018159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
24, 103
               

               
Conread position:
               
224-751
               

               
Cow position:
               
chr10:24314068-24313551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 36
               

               
Conread position:
               
244-766
               

               
Cow position:
               
chr10:3381732-3382231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
323, 92
               

               
Conread position:
               
245-798
               

               
Cow position:
               
chr10:19496496-19495954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
557
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 25
               

               
Conread position:
               
250-801
               

               
Cow position:
               
chr10:40460524-40461075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
283, 75
               

               
Conread position:
               
265-793
               

               
Cow position:
               
chr10:13366053-13365543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 207
               

               
Conread position:
               
278-799
               

               
Cow position:
               
chr10:184078-184607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
301, 51
               

               
Conread position:
               
278-799
               

               
Cow position:
               
chr10:63841126-63841633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
228, 60
               

               
Conread position:
               
284-517
               

               
Cow position:
               
chr10:31537146-31537378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
13, 54
               

               
Conread position:
               
299-544
               

               
Cow position:
               
chr10:65307957-65308201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 0
               

               
Conread position:
               
305-778
               

               
Cow position:
               
chr10:63979585-63980053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
13, 121
               

               
Conread position:
               
308-797
               

               
Cow position:
               
chr10:14928491-14928952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
89, 79
               

               
Conread position:
               
319-801
               

               
Cow position:
               
chr10:44294697-44295169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 18
               

               
Conread position:
               
322-801
               

               
Cow position:
               
chr10:15862278-15861804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
257, 106
               

               
Conread position:
               
324-757
               

               
Cow position:
               
chr10:39904784-39905232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 149
               

               
Conread position:
               
326-800
               

               
Cow position:
               
chr10:46694518-46694044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 83
               

               
Conread position:
               
330-648
               

               
Cow position:
               
chr10:66176036-66175727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
251, 83
               

               
Conread position:
               
334-801
               

               
Cow position:
               
chr10:10415299-10415729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
245, 69
               

               
Conread position:
               
346-798
               

               
Cow position:
               
chr10:39854134-39853678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
233, 127
               

               
Conread position:
               
347-781
               

               
Cow position:
               
chr10:38404626-38404193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 92
               

               
Conread position:
               
350-609
               

               
Cow position:
               
chr10:22842665-22842916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
188, 128
               

               
Conread position:
               
360-801
               

               
Cow position:
               
chr10:14951795-14952204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
168, 10
               

               
Conread position:
               
368-803
               

               
Cow position:
               
chr10:16925437-16925874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 106
               

               
Conread position:
               
369-778
               

               
Cow position:
               
chr10:58377687-58377295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
61, 111
               

               
Conread position:
               
375-513
               

               
Cow position:
               
chr10:28932436-28932301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
402-797
               

               
Cow position:
               
chr10:2123326-2122930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 71
               

               
Conread position:
               
417-804
               

               
Cow position:
               
chr10:34318338-34317957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 14
               

               
Conread position:
               
443-668
               

               
Cow position:
               
chr10:54979903-54979681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
80, 30
               

               
Conread position:
               
445-798
               

               
Cow position:
               
chr10:40152475-40152122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 28
               

               
Conread position:
               
448-801
               

               
Cow position:
               
chr10:11820315-11820666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 31
               

               
Conread position:
               
449-799
               

               
Cow position:
               
chr10:40751634-40751980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 25
               

               
Conread position:
               
449-801
               

               
Cow position:
               
chr10:49310489-49310821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 24
               

               
Conread position:
               
465-723
               

               
Cow position:
               
chr10:55093241-55093496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 8
               

               
Conread position:
               
466-667
               

               
Cow position:
               
chr10:39445139-39444939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
112, 7
               

               
Conread position:
               
472-597
               

               
Cow position:
               
chr10:25454595-25454721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
472-801
               

               
Cow position:
               
chr10:51208545-51208872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
20, 100
               

               
Conread position:
               
482-801
               

               
Cow position:
               
chr10:6260780-6260464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 19
               

               
Conread position:
               
492-797
               

               
Cow position:
               
chr10:10581817-10582135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
498-800
               

               
Cow position:
               
chr10:20371938-20371644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 16
               

               
Conread position:
               
502-798
               

               
Cow position:
               
chr10:19758386-19758680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 141
               

               
Conread position:
               
505-801
               

               
Cow position:
               
chr10:33346639-33346935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 60
               

               
Conread position:
               
508-714
               

               
Cow position:
               
chr10:28931984-28931777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
532-779
               

               
Cow position:
               
chr10:23431873-23432124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
13, 238
               

               
Conread position:
               
532-801
               

               
Cow position:
               
chr10:8328209-8327936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 190
               

               
Conread position:
               
534-800
               

               
Cow position:
               
chr10:20396793-20397041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
11, 44
               

               
Conread position:
               
546-799
               

               
Cow position:
               
chr10:38526983-38527235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
80, 153
               

               
Conread position:
               
552-799
               

               
Cow position:
               
chr10:42748215-42748462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
27, 128
               

               
Conread position:
               
578-801
               

               
Cow position:
               
chr10:42628735-42628958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
579-771
               

               
Cow position:
               
chr10:1367206-1367393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
579-801
               

               
Cow position:
               
chr10:31537379-31537599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
580-799
               

               
Cow position:
               
chr10:31523913-31524131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
581-760
               

               
Cow position:
               
chr10:64289171-64288989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
90, 32
               

               
Conread position:
               
589-798
               

               
Cow position:
               
chr10:19802679-19802885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 53
               

               
Conread position:
               
591-801
               

               
Cow position:
               
chr10:47157073-47157283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 181
               

               
Conread position:
               
591-801
               

               
Cow position:
               
chr10:60192256-60192466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
150, 169
               

               
Conread position:
               
599-798
               

               
Cow position:
               
chr10:39880916-39880714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
52, 101
               

               
Conread position:
               
636-797
               

               
Cow position:
               
chr10:29846481-29846320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
158, 151
               

               
Conread position:
               
637-801
               

               
Cow position:
               
chr10:22842921-22843083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
644-804
               

               
Cow position:
               
chr10:19497138-19496974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
657-801
               

               
Cow position:
               
chr10:54979280-54979138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
668-798
               

               
Cow position:
               
chr10:56064875-56065005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
686-803
               

               
Cow position:
               
chr10:68599073-68598956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
697-798
               

               
Cow position:
               
chr10:24061575-24061474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
102
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-378
               

               
Cow position:
               
chr11:9220835-9220466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 83
               

               
Conread position:
               
1-704
               

               
Cow position:
               
chr11:31877359-31878041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
714
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
14, 53
               

               
Conread position:
               
1-757
               

               
Cow position:
               
chr11:44496398-44495666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
762
               

               
Alignm identity:
               
518
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
508, 10
               

               
Conread position:
               
1-800
               

               
Cow position:
               
chr11:8262516-8261732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
802
               

               
Alignm identity:
               
593
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
414, 29
               

               
Conread position:
               
2-325
               

               
Cow position:
               
chr11:24677249-24677555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
269, 74
               

               
Conread position:
               
2-403
               

               
Cow position:
               
chr11:12092943-12093329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
370, 66
               

               
Conread position:
               
2-514
               

               
Cow position:
               
chr11:76375280-76374794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
492, 34
               

               
Conread position:
               
2-798
               

               
Cow position:
               
chr11:53288287-53287486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
811
               

               
Alignm identity:
               
582
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 59
               

               
Conread position:
               
2-798
               

               
Cow position:
               
chr11:54208805-54209582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
800
               

               
Alignm identity:
               
575
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
507, 9
               

               
Conread position:
               
2-803
               

               
Cow position:
               
chr11:29669451-29668654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
806
               

               
Alignm identity:
               
587
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 105
               

               
Conread position:
               
4-804
               

               
Cow position:
               
chr11:42428514-42429311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
811
               

               
Alignm identity:
               
556
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 65
               

               
Conread position:
               
5-285
               

               
Cow position:
               
chr11:81853412-81853130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
23, 48
               

               
Conread position:
               
5-797
               

               
Cow position:
               
chr11:11987297-11988077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
797
               

               
Alignm identity:
               
584
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
230, 429
               

               
Conread position:
               
6-798
               

               
Cow position:
               
chr11:17108507-17107716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
800
               

               
Alignm identity:
               
549
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 44
               

               
Conread position:
               
12-797
               

               
Cow position:
               
chr11:58133543-58134357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
819
               

               
Alignm identity:
               
592
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 331
               

               
Conread position:
               
17-803
               

               
Cow position:
               
chr11:72110770-72109988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
794
               

               
Alignm identity:
               
581
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 26
               

               
Conread position:
               
21-713
               

               
Cow position:
               
chr11:13581787-13581101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
708
               

               
Alignm identity:
               
465
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 20
               

               
Conread position:
               
21-800
               

               
Cow position:
               
chr11:28062888-28063648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
782
               

               
Alignm identity:
               
576
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
495, 69
               

               
Conread position:
               
22-261
               

               
Cow position:
               
chr11:9607466-9607236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
22-267
               

               
Cow position:
               
chr11:39799078-39798833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
189, 214
               

               
Conread position:
               
22-329
               

               
Cow position:
               
chr11:45110332-45110635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
179, 148
               

               
Conread position:
               
22-506
               

               
Cow position:
               
chr11:11126123-11126592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
9, 36
               

               
Conread position:
               
22-556
               

               
Cow position:
               
chr11:9736750-9736225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 0
               

               
Conread position:
               
22-797
               

               
Cow position:
               
chr11:37477920-37477149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
782
               

               
Alignm identity:
               
577
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 80
               

               
Conread position:
               
22-798
               

               
Cow position:
               
chr11:3492210-3492981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
782
               

               
Alignm identity:
               
579
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 193
               

               
Conread position:
               
22-798
               

               
Cow position:
               
chr11:4041864-4041106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
779
               

               
Alignm identity:
               
566
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 35
               

               
Conread position:
               
22-798
               

               
Cow position:
               
chr11:15982841-15983594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
779
               

               
Alignm identity:
               
564
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
517, 189
               

               
Conread position:
               
22-798
               

               
Cow position:
               
chr11:19065061-19064279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
784
               

               
Alignm identity:
               
577
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 456
               

               
Conread position:
               
22-798
               

               
Cow position:
               
chr11:20921551-20920775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
780
               

               
Alignm identity:
               
578
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 214
               

               
Conread position:
               
22-798
               

               
Cow position:
               
chr11:28230547-28229787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
779
               

               
Alignm identity:
               
572
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
557, 189
               

               
Conread position:
               
22-798
               

               
Cow position:
               
chr11:32450064-32450837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
778
               

               
Alignm identity:
               
577
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
555, 25
               

               
Conread position:
               
22-798
               

               
Cow position:
               
chr11:36744982-36744210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
779
               

               
Alignm identity:
               
568
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 205
               

               
Conread position:
               
22-798
               

               
Cow position:
               
chr11:67449690-67450468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
786
               

               
Alignm identity:
               
578
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
253, 189
               

               
Conread position:
               
22-798
               

               
Cow position:
               
chr11:67847370-67846601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
779
               

               
Alignm identity:
               
576
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 69
               

               
Conread position:
               
23-313
               

               
Cow position:
               
chr11:53432573-53432283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
23-711
               

               
Cow position:
               
chr11:28072944-28073614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
711
               

               
Alignm identity:
               
456
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
84, 154
               

               
Conread position:
               
23-779
               

               
Cow position:
               
chr11:19103290-19102535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
758
               

               
Alignm identity:
               
549
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
554, 333
               

               
Conread position:
               
23-783
               

               
Cow position:
               
chr11:37093866-37093106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
763
               

               
Alignm identity:
               
556
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
554, 447
               

               
Conread position:
               
23-797
               

               
Cow position:
               
chr11:10846647-10847412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
777
               

               
Alignm identity:
               
570
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
554, 51
               

               
Conread position:
               
23-797
               

               
Cow position:
               
chr11:12359223-12358455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
777
               

               
Alignm identity:
               
571
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
560, 152
               

               
Conread position:
               
23-797
               

               
Cow position:
               
chr11:23876500-23877272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
777
               

               
Alignm identity:
               
562
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
473, 450
               

               
Conread position:
               
23-797
               

               
Cow position:
               
chr11:24392523-24393287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
777
               

               
Alignm identity:
               
554
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
556, 45
               

               
Conread position:
               
23-797
               

               
Cow position:
               
chr11:41171490-41170722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
777
               

               
Alignm identity:
               
564
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
556, 45
               

               
Conread position:
               
23-797
               

               
Cow position:
               
chr11:71328842-71329614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
780
               

               
Alignm identity:
               
578
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 126
               

               
Conread position:
               
27-375
               

               
Cow position:
               
chr11:21440828-21441160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
39, 20
               

               
Conread position:
               
27-690
               

               
Cow position:
               
chr11:24242647-24243320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
684
               

               
Alignm identity:
               
443
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 45
               

               
Conread position:
               
27-784
               

               
Cow position:
               
chr11:33044919-33044164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
770
               

               
Alignm identity:
               
505
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 25
               

               
Conread position:
               
27-798
               

               
Cow position:
               
chr11:52418593-52419358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
775
               

               
Alignm identity:
               
564
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 184
               

               
Conread position:
               
28-798
               

               
Cow position:
               
chr11:1496859-1496104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
774
               

               
Alignm identity:
               
565
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 177
               

               
Conread position:
               
34-618
               

               
Cow position:
               
chr11:3892071-3891476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
610
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
55, 20
               

               
Conread position:
               
38-784
               

               
Cow position:
               
chr11:28055383-28054644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
749
               

               
Alignm identity:
               
535
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 167
               

               
Conread position:
               
38-797
               

               
Cow position:
               
chr11:4028340-4027594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
762
               

               
Alignm identity:
               
538
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 392
               

               
Conread position:
               
38-797
               

               
Cow position:
               
chr11:26125717-26124961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
763
               

               
Alignm identity:
               
562
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
465, 283
               

               
Conread position:
               
38-797
               

               
Cow position:
               
chr11:38836206-38835461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
763
               

               
Alignm identity:
               
543
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
485, 435
               

               
Conread position:
               
38-797
               

               
Cow position:
               
chr11:43515422-43514660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
766
               

               
Alignm identity:
               
563
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 211
               

               
Conread position:
               
41-797
               

               
Cow position:
               
chr11:85394595-85393841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
759
               

               
Alignm identity:
               
564
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
538, 387
               

               
Conread position:
               
41-798
               

               
Cow position:
               
chr11:57628835-57628076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
762
               

               
Alignm identity:
               
561
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 433
               

               
Conread position:
               
42-779
               

               
Cow position:
               
chr11:77729310-77728569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
747
               

               
Alignm identity:
               
536
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 48
               

               
Conread position:
               
47-618
               

               
Cow position:
               
chr11:9581320-9580747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
584
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
41, 17
               

               
Conread position:
               
51-351
               

               
Cow position:
               
chr11:17925341-17925042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
6, 127
               

               
Conread position:
               
53-798
               

               
Cow position:
               
chr11:8243930-8244674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
766
               

               
Alignm identity:
               
546
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 277
               

               
Conread position:
               
55-801
               

               
Cow position:
               
chr11:9660165-9659414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
760
               

               
Alignm identity:
               
554
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
524, 63
               

               
Conread position:
               
59-762
               

               
Cow position:
               
chr11:9158177-9157499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
705
               

               
Alignm identity:
               
518
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
518, 33
               

               
Conread position:
               
60-797
               

               
Cow position:
               
chr11:44158000-44157283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
742
               

               
Alignm identity:
               
534
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 20
               

               
Conread position:
               
67-500
               

               
Cow position:
               
chr11:7687155-7687589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 32
               

               
Conread position:
               
67-801
               

               
Cow position:
               
chr11:44895751-44895030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
755
               

               
Alignm identity:
               
490
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
432, 63
               

               
Conread position:
               
68-378
               

               
Cow position:
               
chr11:9977487-9977178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
43, 28
               

               
Conread position:
               
68-412
               

               
Cow position:
               
chr11:52462337-52462692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
262, 0
               

               
Conread position:
               
68-517
               

               
Cow position:
               
chr11:49076419-49076001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
69-743
               

               
Cow position:
               
chr11:10210717-10210048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
688
               

               
Alignm identity:
               
498
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 106
               

               
Conread position:
               
72-681
               

               
Cow position:
               
chr11:15998134-15998746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
619
               

               
Alignm identity:
               
448
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 296
               

               
Conread position:
               
78-661
               

               
Cow position:
               
chr11:81552969-81552401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
32, 21
               

               
Conread position:
               
78-761
               

               
Cow position:
               
chr11:43731676-43732337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
688
               

               
Alignm identity:
               
474
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 167
               

               
Conread position:
               
79-615
               

               
Cow position:
               
chr11:1076674-1077211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
556
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
48, 22
               

               
Conread position:
               
85-327
               

               
Cow position:
               
chr11:44507431-44507669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
147, 0
               

               
Conread position:
               
85-404
               

               
Cow position:
               
chr11:65162277-65161961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
28, 20
               

               
Conread position:
               
86-488
               

               
Cow position:
               
chr11:19220506-19220106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
34, 19
               

               
Conread position:
               
91-445
               

               
Cow position:
               
chr11:40777467-40777113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 74
               

               
Conread position:
               
92-800
               

               
Cow position:
               
chr11:29234376-29233693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
713
               

               
Alignm identity:
               
478
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 126
               
92-801UCSC Genome Browser

               
Conread position:
               

               

               
Cow position:
               
chr11:87127108-87127811 (view  custom track)
               

               
Alignm length:
               
718
               

               
Alignm identity:
               
476
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 142
               
93-351UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:
chr11:66725777-66726022 (view  custom track)

               
               
               
Alignm length:
259

               
               
               
Alignm identity:
185

               
               
               
Alignm E-value:
8e-34

               
               
               
Alignm gaps (pig, cow):
14, 0
97-797UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:
chr11:34020179-34020860 (view  custom track)

               
               
               
Alignm length:
705

               
               
               
Alignm identity:
527

               
               
               
Alignm E-value:
0

               
               
               
Alignm gaps (pig, cow):
480, 147

               
               
               Conread position:99-797
               
               
               Cow position:chr11:8887878-8887188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:701
               
               
               Alignm identity:539
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):478, 304

               
               
               Conread position:100-743
               
               
               Cow position:chr11:45547788-45548388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:649
               
               
               Alignm identity:411
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):174, 62

               
               
               Conread position:100-794
               
               
               Cow position:chr11:75494472-75493778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:708
               
               
               Alignm identity:420
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):80, 40

               
               
               Conread position:101-513
               
               
               Cow position:chr11:30184014-30183605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:265
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):45, 7

               
               
               Conread position:101-778
               
               
               Cow position:chr11:50068008-50067345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:686
               
               
               Alignm identity:404
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):49, 44

               
               
               Conread position:101-796
               
               
               Cow position:chr11:49838828-49839494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:701
               
               
               Alignm identity:438
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):113, 99

               
               
               Conread position:102-738
               
               
               Cow position:chr11:3254010-3253390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:645
               
               
               Alignm identity:396
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):112, 100

               
               
               Conread position:104-334
               
               
               Cow position:chr11:3786042-3786270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):46, 36

               
               
               Conread position:104-389
               
               
               Cow position:chr11:33195335-33195057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):219, 0

               
               
               Conread position:104-798
               
               
               Cow position:chr11:63660307-63659618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:699
               
               
               Alignm identity:511
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 100

               
               
               Conread position:105-677
               
               
               Cow position:chr11:35257297-35256747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:578
               
               
               Alignm identity:366
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):88, 16

               
               
               Conread position:108-648
               
               
               Cow position:chr11:10218272-10217749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:542
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):469, 146

               
               
               Conread position:109-508
               
               
               Cow position:chr11:31414952-31414560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:110-607
               
               
               Cow position:chr11:49064459-49064951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 42

               
               
               Conread position:111-602
               
               
               Cow position:chr11:32071396-32071877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 127

               
               
               Conread position:111-756
               
               
               Cow position:chr11:30125950-30125335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:647
               
               
               Alignm identity:467
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):466, 84

               
               
               Conread position:112-456
               
               
               Cow position:chr11:43009513-43009854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:225
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):143, 30

               
               
               Conread position:112-728
               
               
               Cow position:chr11:21882813-21882207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:398
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):87, 31

               
               
               Conread position:114-770
               
               
               Cow position:chr11:14730229-14729581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:666
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 62

               
               
               Conread position:118-798
               
               
               Cow position:chr11:25526868-25527528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:687
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 201

               
               
               Conread position:125-798
               
               
               Cow position:chr11:21466381-21467047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:675
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):452, 90

               
               
               Conread position:128-472
               
               
               Cow position:chr11:7073162-7072831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:240
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:132-750
               
               
               Cow position:chr11:44861222-44860607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:466
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 73

               
               
               Conread position:132-798
               
               
               Cow position:chr11:37492339-37491676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:677
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 73

               
               
               Conread position:132-801
               
               
               Cow position:chr11:30304572-30305218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):447, 83

               
               
               Conread position:137-801
               
               
               Cow position:chr11:17220895-17220242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:676
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):196, 74

               
               
               Conread position:157-480
               
               
               Cow position:chr11:17280905-17280593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:231
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):15, 87

               
               
               Conread position:167-774
               
               
               Cow position:chr11:36761435-36762030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 56

               
               
               Conread position:169-769
               
               
               Cow position:chr11:26566372-26565780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 63

               
               
               Conread position:189-798
               
               
               Cow position:chr11:12351701-12351095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:474
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):335, 171

               
               
               Conread position:220-761
               
               
               Cow position:chr11:32272309-32271783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:544
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):360, 7

               
               
               Conread position:221-619
               
               
               Cow position:chr11:28050387-28050003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 27

               
               
               Conread position:225-720
               
               
               Cow position:chr11:35130905-35131384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:323
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):16, 27

               
               
               Conread position:231-804
               
               
               Cow position:chr11:35228614-35228062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:585
               
               
               Alignm identity:365
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):24, 33

               
               
               Conread position:234-798
               
               
               Cow position:chr11:75919828-75920372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):345, 102

               
               
               Conread position:240-558
               
               
               Cow position:chr11:77235175-77235495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 10

               
               
               Conread position:250-800
               
               
               Cow position:chr11:44230555-44231085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:554
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):330, 82

               
               
               Conread position:266-788
               
               
               Cow position:chr11:7113040-7113554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):309, 99

               
               
               Conread position:270-797
               
               
               Cow position:chr11:4271424-4270891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:540
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):309, 59

               
               
               Conread position:274-642
               
               
               Cow position:chr11:49040188-49039833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:248
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):66, 108

               
               
               Conread position:274-798
               
               
               Cow position:chr11:9607128-9606608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:529
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):277, 200

               
               
               Conread position:281-798
               
               
               Cow position:chr11:39833208-39833722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:530
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):264, 42

               
               
               Conread position:291-798
               
               
               Cow position:chr11:61401573-61401081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):288, 36

               
               
               Conread position:318-798
               
               
               Cow position:chr11:45110851-45111339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 158

               
               
               Conread position:320-711
               
               
               Cow position:chr11:20688174-20688545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:257
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):90, 24

               
               
               Conread position:327-797
               
               
               Cow position:chr11:73465613-73465146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:298
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):12, 82

               
               
               Conread position:335-801
               
               
               Cow position:chr11:8282586-8283048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 52

               
               
               Conread position:341-714
               
               
               Cow position:chr11:10049638-10050006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):238, 54

               
               
               Conread position:346-737
               
               
               Cow position:chr11:81853104-81852723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 114

               
               
               Conread position:360-678
               
               
               Cow position:chr11:13067478-13067172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:214
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):219, 118

               
               
               Conread position:360-678
               
               
               Cow position:chr11:13162526-13162832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):219, 113

               
               
               Conread position:363-794
               
               
               Cow position:chr11:10089871-10090302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 65

               
               
               Conread position:389-804
               
               
               Cow position:chr11:66726027-66726451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 84

               
               
               Conread position:395-558
               
               
               Cow position:chr11:46962849-46962692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:407-794
               
               
               Cow position:chr11:5343638-5343251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 66

               
               
               Conread position:410-801
               
               
               Cow position:chr11:37065541-37065145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 63

               
               
               Conread position:414-641
               
               
               Cow position:chr11:62216512-62216290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):163, 58

               
               
               Conread position:415-723
               
               
               Cow position:chr11:65161971-65161663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):164, 58

               
               
               Conread position:419-766
               
               
               Cow position:chr11:30186893-30187227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:242
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):109, 9

               
               
               Conread position:421-698
               
               
               Cow position:chr11:32684882-32685154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 54

               
               
               Conread position:443-798
               
               
               Cow position:chr11:64045613-64045968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 30

               
               
               Conread position:448-754
               
               
               Cow position:chr11:47761310-47761017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):69, 25

               
               
               Conread position:450-800
               
               
               Cow position:chr11:40776920-40776568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 23

               
               
               Conread position:458-617
               
               
               Cow position:chr11:33195069-33194910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):81, 13

               
               
               Conread position:463-678
               
               
               Cow position:chr11:7688249-7688460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):116, 26

               
               
               Conread position:466-801
               
               
               Cow position:chr11:75874148-75873810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):119, 42

               
               
               Conread position:467-801
               
               
               Cow position:chr11:45655633-45655961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:238
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):63, 11

               
               
               Conread position:469-776
               
               
               Cow position:chr11:67867664-67867365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):12, 59

               
               
               Conread position:484-800
               
               
               Cow position:chr11:31414267-31413961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 32

               
               
               Conread position:489-798
               
               
               Cow position:chr11:73476968-73477278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:492-719
               
               
               Cow position:chr11:50837650-50837877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):36, 52

               
               
               Conread position:497-764
               
               
               Cow position:chr11:17280628-17280362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 51

               
               
               Conread position:498-733
               
               
               Cow position:chr11:3240317-3240550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):35, 131

               
               
               Conread position:498-784
               
               
               Cow position:chr11:52886822-52886547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 43

               
               
               Conread position:510-641
               
               
               Cow position:chr11:59370669-59370537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):67, 30

               
               
               Conread position:510-801
               
               
               Cow position:chr11:48084794-48085083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:210
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):22, 17

               
               
               Conread position:540-797
               
               
               Cow position:chr11:8519704-8519958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 141

               
               
               Conread position:543-801
               
               
               Cow position:chr11:43009896-43010154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):35, 99

               
               
               Conread position:550-781
               
               
               Cow position:chr11:9734926-9734694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 142

               
               
               Conread position:554-798
               
               
               Cow position:chr11:38505877-38505635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 11

               
               
               Conread position:563-773
               
               
               Cow position:chr11:18073687-18073471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):16, 127

               
               
               Conread position:591-801
               
               
               Cow position:chr11:4065471-4065256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:597-797
               
               
               Cow position:chr11:38132368-38132167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):56, 126

               
               
               Conread position:599-778
               
               
               Cow position:chr11:30183533-30183363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):174, 36

               
               
               Conread position:599-798
               
               
               Cow position:chr11:12093328-12093528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:162
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 0

               
               
               Conread position:603-798
               
               
               Cow position:chr11:33194778-33194583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:156
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:606-781
               
               
               Cow position:chr11:77235493-77235668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:150
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:608-797
               
               
               Cow position:chr11:53432286-53432096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):186, 0

               
               
               Conread position:612-803
               
               
               Cow position:chr11:9220336-9220144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:159
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 0

               
               
               Conread position:623-801
               
               
               Cow position:chr11:7316668-7316843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:146
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:629-798
               
               
               Cow position:chr11:31925969-31926141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):52, 36

               
               
               Conread position:657-798
               
               
               Cow position:chr11:76374371-76374231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:680-800
               
               
               Cow position:chr11:59369460-59369580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:689-798
               
               
               Cow position:chr11:8267681-8267572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:698-798
               
               
               Cow position:chr11:256317-256217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:83
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-798
               
               
               Cow position:chr12:2282010-2282803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:803
               
               
               Alignm identity:571
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 66

               
               
               Conread position:4-793
               
               
               Cow position:chr12:20998652-20997881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:793
               
               
               Alignm identity:554
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):257, 29

               
               
               Conread position:5-803
               
               
               Cow position:chr12:22206275-22205484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:802
               
               
               Alignm identity:576
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):572, 52

               
               
               Conread position:19-797
               
               
               Cow position:chr12:8678640-8677864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:783
               
               
               Alignm identity:561
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):564, 310

               
               
               Conread position:22-293
               
               
               Cow position:chr12:21883506-21883779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):84, 201

               
               
               Conread position:22-714
               
               
               Cow position:chr12:21207179-21207867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:694
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):555, 312

               
               
               Conread position:22-797
               
               
               Cow position:chr12:21426187-21426951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:580
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):557, 69

               
               
               Conread position:22-798
               
               
               Cow position:chr12:3360395-3361161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:557
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):557, 277

               
               
               Conread position:22-798
               
               
               Cow position:chr12:21255167-21254399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:782
               
               
               Alignm identity:562
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 83

               
               
               Conread position:22-798
               
               
               Cow position:chr12:32653029-32653801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:780
               
               
               Alignm identity:567
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 214

               
               
               Conread position:22-798
               
               
               Cow position:chr12:37558041-37558813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:779
               
               
               Alignm identity:569
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):557, 312

               
               
               Conread position:22-798
               
               
               Cow position:chr12:43031892-43031128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:779
               
               
               Alignm identity:561
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 134

               
               
               Conread position:22-804
               
               
               Cow position:chr12:15951763-15951002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:791
               
               
               Alignm identity:544
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):510, 68

               
               
               Conread position:23-797
               
               
               Cow position:chr12:1401977-1402747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:552
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):554, 13

               
               
               Conread position:23-797
               
               
               Cow position:chr12:6407159-6406394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:779
               
               
               Alignm identity:562
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):322, 126

               
               
               Conread position:23-797
               
               
               Cow position:chr12:11097724-11098499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:779
               
               
               Alignm identity:573
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):367, 357

               
               
               Conread position:26-797
               
               
               Cow position:chr12:21499607-21500358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:784
               
               
               Alignm identity:519
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 26

               
               
               Conread position:30-710
               
               
               Cow position:chr12:26141303-26141983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:684
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 206

               
               
               Conread position:38-797
               
               
               Cow position:chr12:27933444-27932688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:762
               
               
               Alignm identity:561
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):541, 68

               
               
               Conread position:38-801
               
               
               Cow position:chr12:252559-251796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:770
               
               
               Alignm identity:538
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):197, 139

               
               
               Conread position:38-803
               
               
               Cow position:chr12:25101566-25100797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:774
               
               
               Alignm identity:562
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 292

               
               
               Conread position:53-797
               
               
               Cow position:chr12:42860302-42859570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:541
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):526, 349

               
               
               Conread position:54-656
               
               
               Cow position:chr12:17617399-17616791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:381
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):40, 159

               
               
               Conread position:57-485
               
               
               Cow position:chr12:21197349-21197770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 189

               
               
               Conread position:68-378
               
               
               Cow position:chr12:34855636-34855327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):20, 260

               
               
               Conread position:68-747
               
               
               Cow position:chr12:1137124-1137779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 67

               
               
               Conread position:68-755
               
               
               Cow position:chr12:17975075-17975751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:699
               
               
               Alignm identity:433
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):184, 13

               
               
               Conread position:70-378
               
               
               Cow position:chr12:3630722-3631015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:70-399
               
               
               Cow position:chr12:2840055-2839737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:228
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):43, 36

               
               
               Conread position:70-698
               
               
               Cow position:chr12:347387-347986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:643
               
               
               Alignm identity:423
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):18, 13

               
               
               Conread position:72-803
               
               
               Cow position:chr12:21901488-21902200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:740
               
               
               Alignm identity:550
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 20

               
               
               Conread position:82-782
               
               
               Cow position:chr12:14693207-14693864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:451
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):68, 19

               
               
               Conread position:86-786
               
               
               Cow position:chr12:16293471-16294175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:476
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 16

               
               
               Conread position:97-347
               
               
               Cow position:chr12:26947710-26947451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):115, 207

               
               
               Conread position:97-798
               
               
               Cow position:chr12:22332176-22332881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 85

               
               
               Conread position:100-426
               
               
               Cow position:chr12:22255337-22255649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):210, 34

               
               
               Conread position:100-803
               
               
               Cow position:chr12:21941339-21942029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:520
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):309, 222

               
               
               Conread position:108-798
               
               
               Cow position:chr12:8310754-8311438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:693
               
               
               Alignm identity:517
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 10

               
               
               Conread position:115-798
               
               
               Cow position:chr12:2373-3056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:686
               
               
               Alignm identity:524
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):462, 357

               
               
               Conread position:116-708
               
               
               Cow position:chr12:10483620-10484198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:401
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 89

               
               
               Conread position:118-688
               
               
               Cow position:chr12:16326316-16326845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:578
               
               
               Alignm identity:379
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):150, 100

               
               
               Conread position:123-509
               
               
               Cow position:chr12:22026341-22026719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:251
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:128-525
               
               
               Cow position:chr12:48404638-48405027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:128-798
               
               
               Cow position:chr12:14663022-14662376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:672
               
               
               Alignm identity:475
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):452, 116

               
               
               Conread position:145-781
               
               
               Cow position:chr12:17128708-17128082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:647
               
               
               Alignm identity:408
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):5, 121

               
               
               Conread position:148-801
               
               
               Cow position:chr12:28766408-28765757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:659
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 116

               
               
               Conread position:166-334
               
               
               Cow position:chr12:42420784-42420616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):34, 38

               
               
               Conread position:172-798
               
               
               Cow position:chr12:45261238-45261880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:649
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 14

               
               
               Conread position:198-616
               
               
               Cow position:chr12:14216006-14216420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:266
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):203, 57

               
               
               Conread position:228-784
               
               
               Cow position:chr12:16841427-16840885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:564
               
               
               Alignm identity:349
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):200, 63

               
               
               Conread position:245-431
               
               
               Cow position:chr12:601346-601164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):157, 0

               
               
               Conread position:272-702
               
               
               Cow position:chr12:8982681-8982263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):305, 52

               
               
               Conread position:318-471
               
               
               Cow position:chr12:42420343-42420190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:318-798
               
               
               Cow position:chr12:26947202-26946733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 13

               
               
               Conread position:368-784
               
               
               Cow position:chr12:3632427-3632021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:281
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):69, 65

               
               
               Conread position:445-784
               
               
               Cow position:chr12:34854886-34854561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):91, 32

               
               
               Conread position:448-804
               
               
               Cow position:chr12:18500943-18501295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 186

               
               
               Conread position:493-775
               
               
               Cow position:chr12:2838903-2838621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 216

               
               
               Conread position:503-710
               
               
               Cow position:chr12:48405232-48405441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:519-803
               
               
               Cow position:chr12:21197935-21198221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 277

               
               
               Conread position:541-798
               
               
               Cow position:chr12:33986161-33986419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:585-709
               
               
               Cow position:chr12:48211761-48211643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:596-798
               
               
               Cow position:chr12:5861209-5861410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:167
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 79

               
               
               Conread position:602-798
               
               
               Cow position:chr12:23240065-23240260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:668-804
               
               
               Cow position:chr12:1868660-1868793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:683-798
               
               
               Cow position:chr12:31544920-31545035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:95
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:694-798
               
               
               Cow position:chr12:4157530-4157634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-800
               
               
               Cow position:chr13:34187435-34186649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:803
               
               
               Alignm identity:600
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):540, 89

               
               
               Conread position:2-640
               
               
               Cow position:chr13:48356577-48357183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:649
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 50

               
               
               Conread position:2-779
               
               
               Cow position:chr13:6668889-6668106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:786
               
               
               Alignm identity:562
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 17

               
               
               Conread position:2-797
               
               
               Cow position:chr13:15521270-15520479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:799
               
               
               Alignm identity:583
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):388, 17

               
               
               Conread position:2-798
               
               
               Cow position:chr13:49972935-49973720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:809
               
               
               Alignm identity:577
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 51

               
               
               Conread position:2-800
               
               
               Cow position:chr13:20543114-20542337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:800
               
               
               Alignm identity:589
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):290, 28

               
               
               Conread position:2-804
               
               
               Cow position:chr13:54283844-54284612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:807
               
               
               Alignm identity:599
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 29

               
               
               Conread position:5-642
               
               
               Cow position:chr13:30302316-30302944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:639
               
               
               Alignm identity:454
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 37

               
               
               Conread position:5-797
               
               
               Cow position:chr13:4940329-4941124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:798
               
               
               Alignm identity:578
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 376

               
               
               Conread position:5-797
               
               
               Cow position:chr13:34043118-34042333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:795
               
               
               Alignm identity:573
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):574, 40

               
               
               Conread position:5-797
               
               
               Cow position:chr13:35756479-35757277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:806
               
               
               Alignm identity:595
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 11

               
               
               Conread position:5-798
               
               
               Cow position:chr13:3655063-3654288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:799
               
               
               Alignm identity:571
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 237

               
               
               Conread position:12-430
               
               
               Cow position:chr13:35029779-35030180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:246
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):11, 79

               
               
               Conread position:12-797
               
               
               Cow position:chr13:1593902-1593119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:790
               
               
               Alignm identity:586
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 14

               
               
               Conread position:20-503
               
               
               Cow position:chr13:19187607-19187131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:306
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):25, 16

               
               
               Conread position:22-563
               
               
               Cow position:chr13:32544216-32544742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:543
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):533, 19

               
               
               Conread position:22-595
               
               
               Cow position:chr13:34868032-34868606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 211

               
               
               Conread position:22-798
               
               
               Cow position:chr13:2297530-2296775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:781
               
               
               Alignm identity:549
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 68

               
               
               Conread position:22-798
               
               
               Cow position:chr13:2389535-2388782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:785
               
               
               Alignm identity:562
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 298

               
               
               Conread position:22-798
               
               
               Cow position:chr13:17307746-17308511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:779
               
               
               Alignm identity:568
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 84

               
               
               Conread position:22-798
               
               
               Cow position:chr13:21840935-21840158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:780
               
               
               Alignm identity:581
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 225

               
               
               Conread position:22-798
               
               
               Cow position:chr13:31734811-31734049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:559
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):557, 189

               
               
               Conread position:22-798
               
               
               Cow position:chr13:34326398-34325639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:781
               
               
               Alignm identity:580
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):433, 123

               
               
               Conread position:22-801
               
               
               Cow position:chr13:4872339-4873115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:783
               
               
               Alignm identity:579
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 206

               
               
               Conread position:23-421
               
               
               Cow position:chr13:15542728-15543125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:23-493
               
               
               Cow position:chr13:4481745-4482201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:23-756
               
               
               Cow position:chr13:33337060-33336349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:519
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 83

               
               
               Conread position:23-797
               
               
               Cow position:chr13:15925121-15924348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:777
               
               
               Alignm identity:565
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):554, 405

               
               
               Conread position:27-801
               
               
               Cow position:chr13:2305767-2306529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:787
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 28

               
               
               Conread position:28-797
               
               
               Cow position:chr13:50108734-50109498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:772
               
               
               Alignm identity:557
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):551, 121

               
               
               Conread position:30-323
               
               
               Cow position:chr13:53834041-53834334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:205
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):181, 206

               
               
               Conread position:38-803
               
               
               Cow position:chr13:32738531-32737779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:769
               
               
               Alignm identity:561
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):541, 147

               
               
               Conread position:41-798
               
               
               Cow position:chr13:32986764-32986021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:761
               
               
               Alignm identity:561
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):514, 121

               
               
               Conread position:43-798
               
               
               Cow position:chr13:31613053-31612300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:758
               
               
               Alignm identity:556
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):534, 189

               
               
               Conread position:50-714
               
               
               Cow position:chr13:30245445-30244781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:666
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):527, 421

               
               
               Conread position:55-798
               
               
               Cow position:chr13:33825446-33824699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:759
               
               
               Alignm identity:560
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 301

               
               
               Conread position:56-801
               
               
               Cow position:chr13:51457895-51458624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:768
               
               
               Alignm identity:475
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):38, 89

               
               
               Conread position:60-801
               
               
               Cow position:chr13:22186418-22185700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:474
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 196

               
               
               Conread position:67-383
               
               
               Cow position:chr13:34057571-34057254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):42, 84

               
               
               Conread position:69-526
               
               
               Cow position:chr13:46733036-46732595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:299
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):357, 172

               
               
               Conread position:69-723
               
               
               Cow position:chr13:23410686-23410045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:670
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 66

               
               
               Conread position:72-781
               
               
               Cow position:chr13:2909132-2908430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:535
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 47

               
               
               Conread position:74-520
               
               
               Cow position:chr13:21600918-21601359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:293
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):141, 7

               
               
               Conread position:87-800
               
               
               Cow position:chr13:34936465-34937186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:545
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 146

               
               
               Conread position:92-541
               
               
               Cow position:chr13:30237509-30237945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 94

               
               
               Conread position:97-607
               
               
               Cow position:chr13:2232009-2232505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):480, 146

               
               
               Conread position:97-794
               
               
               Cow position:chr13:3276495-3277186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:699
               
               
               Alignm identity:531
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):482, 153

               
               
               Conread position:97-798
               
               
               Cow position:chr13:30657625-30656941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:705
               
               
               Alignm identity:522
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 58

               
               
               Conread position:97-798
               
               
               Cow position:chr13:62328243-62327548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:703
               
               
               Alignm identity:534
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):482, 121

               
               
               Conread position:100-788
               
               
               Cow position:chr13:30140333-30141032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:711
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 85

               
               
               Conread position:100-801
               
               
               Cow position:chr13:31560532-31561226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:477
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 34

               
               
               Conread position:101-771
               
               
               Cow position:chr13:14392006-14392640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:679
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 31

               
               
               Conread position:105-720
               
               
               Cow position:chr13:24581761-24581157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 27

               
               
               Conread position:108-735
               
               
               Cow position:chr13:34209276-34208643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:649
               
               
               Alignm identity:396
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):53, 139

               
               
               Conread position:108-797
               
               
               Cow position:chr13:1559387-1560032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:696
               
               
               Alignm identity:432
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):106, 76

               
               
               Conread position:108-797
               
               
               Cow position:chr13:38442064-38441395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:699
               
               
               Alignm identity:437
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):43, 37

               
               
               Conread position:108-801
               
               
               Cow position:chr13:31831956-31832636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:695
               
               
               Alignm identity:527
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):471, 84

               
               
               Conread position:109-426
               
               
               Cow position:chr13:13046469-13046158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 22

               
               
               Conread position:110-797
               
               
               Cow position:chr13:58261465-58262142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:700
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 42

               
               
               Conread position:110-798
               
               
               Cow position:chr13:34912015-34911343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:691
               
               
               Alignm identity:515
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 95

               
               
               Conread position:118-797
               
               
               Cow position:chr13:33928189-33927551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:682
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):459, 31

               
               
               Conread position:118-798
               
               
               Cow position:chr13:34143302-34142622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:686
               
               
               Alignm identity:520
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 228

               
               
               Conread position:123-800
               
               
               Cow position:chr13:45647374-45648035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:693
               
               
               Alignm identity:433
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):12, 21

               
               
               Conread position:137-471
               
               
               Cow position:chr13:3058617-3058283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 208

               
               
               Conread position:161-754
               
               
               Cow position:chr13:60701866-60701306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:596
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):424, 89

               
               
               Conread position:169-797
               
               
               Cow position:chr13:9043919-9044536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:471
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):241, 63

               
               
               Conread position:171-798
               
               
               Cow position:chr13:34692573-34693201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):368, 109

               
               
               Conread position:179-772
               
               
               Cow position:chr13:19438368-19438943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 53

               
               
               Conread position:204-535
               
               
               Cow position:chr13:45468831-45469149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):10, 24

               
               
               Conread position:219-758
               
               
               Cow position:chr13:21130789-21131317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:544
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):218, 46

               
               
               Conread position:227-447
               
               
               Cow position:chr13:34027739-34027958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):89, 23

               
               
               Conread position:232-403
               
               
               Cow position:chr13:32525274-32525103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):158, 148

               
               
               Conread position:243-696
               
               
               Cow position:chr13:5718472-5718902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:307
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):49, 11

               
               
               Conread position:265-798
               
               
               Cow position:chr13:13324261-13324785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):314, 69

               
               
               Conread position:270-708
               
               
               Cow position:chr13:43801497-43801916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:283
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):229, 64

               
               
               Conread position:275-801
               
               
               Cow position:chr13:56730759-56730248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:529
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):260, 27

               
               
               Conread position:311-753
               
               
               Cow position:chr13:23003966-23003527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):268, 162

               
               
               Conread position:319-739
               
               
               Cow position:chr13:27748650-27748235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:277
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):91, 35

               
               
               Conread position:321-729
               
               
               Cow position:chr13:41312206-41311794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:261
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):34, 89

               
               
               Conread position:325-669
               
               
               Cow position:chr13:2583738-2583399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):16, 95

               
               
               Conread position:325-708
               
               
               Cow position:chr13:34387864-34387487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:258
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):84, 9

               
               
               Conread position:330-801
               
               
               Cow position:chr13:43852729-43852256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:299
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):249, 65

               
               
               Conread position:336-803
               
               
               Cow position:chr13:30063706-30064163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 101

               
               
               Conread position:383-612
               
               
               Cow position:chr13:15451863-15451649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):194, 89

               
               
               Conread position:392-798
               
               
               Cow position:chr13:35030178-35030587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 84

               
               
               Conread position:399-801
               
               
               Cow position:chr13:34767638-34767256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 59

               
               
               Conread position:402-794
               
               
               Cow position:chr13:3567425-3567826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 26

               
               
               Conread position:438-801
               
               
               Cow position:chr13:11764557-11764220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:253
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):140, 35

               
               
               Conread position:439-801
               
               
               Cow position:chr13:20324162-20324515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):35, 17

               
               
               Conread position:464-667
               
               
               Cow position:chr13:10114949-10114748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):75, 9

               
               
               Conread position:472-771
               
               
               Cow position:chr13:47230277-47229978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 15

               
               
               Conread position:487-789
               
               
               Cow position:chr13:28672910-28672608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):58, 43

               
               
               Conread position:493-804
               
               
               Cow position:chr13:16343484-16343176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 11

               
               
               Conread position:511-762
               
               
               Cow position:chr13:28706386-28706134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):19, 37

               
               
               Conread position:519-804
               
               
               Cow position:chr13:46732465-46732186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 67

               
               
               Conread position:531-797
               
               
               Cow position:chr13:4178883-4178615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:533-784
               
               
               Cow position:chr13:11224873-11224621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):30, 69

               
               
               Conread position:541-803
               
               
               Cow position:chr13:4483576-4483837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):253, 209

               
               
               Conread position:549-779
               
               
               Cow position:chr13:3338573-3338805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):34, 163

               
               
               Conread position:585-742
               
               
               Cow position:chr13:30237941-30238098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:590-798
               
               
               Cow position:chr13:60466165-60466373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:590-801
               
               
               Cow position:chr13:32524979-32524757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):37, 19

               
               
               Conread position:592-798
               
               
               Cow position:chr13:3058281-3058074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:620-801
               
               
               Cow position:chr13:9540215-9540035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):30, 58

               
               
               Conread position:620-803
               
               
               Cow position:chr13:32544917-32545102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):174, 0

               
               
               Conread position:625-798
               
               
               Cow position:chr13:34868603-34868778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:147
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):24, 94

               
               
               Conread position:637-798
               
               
               Cow position:chr13:676751-676912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:138
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:644-801
               
               
               Cow position:chr13:43850278-43850122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:671-801
               
               
               Cow position:chr13:15451647-15451519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:682-798
               
               
               Cow position:chr13:22765943-22766059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-339
               
               
               Cow position:chr14:44551175-44551509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 36

               
               
               Conread position:1-801
               
               
               Cow position:chr14:35388009-35387235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:804
               
               
               Alignm identity:581
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):295, 107

               
               
               Conread position:1-801
               
               
               Cow position:chr14:44225538-44226312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:802
               
               
               Alignm identity:582
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 89

               
               
               Conread position:2-513
               
               
               Cow position:chr14:45159981-45160495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 331

               
               
               Conread position:2-789
               
               
               Cow position:chr14:13272383-13273150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:790
               
               
               Alignm identity:560
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 34

               
               
               Conread position:2-798
               
               
               Cow position:chr14:38533177-38532380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:804
               
               
               Alignm identity:576
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):240, 39

               
               
               Conread position:2-798
               
               
               Cow position:chr14:44376555-44377349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:807
               
               
               Alignm identity:557
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 168

               
               
               Conread position:2-798
               
               
               Cow position:chr14:45916511-45917330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:827
               
               
               Alignm identity:570
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 56

               
               
               Conread position:12-797
               
               
               Cow position:chr14:28994729-28993942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:789
               
               
               Alignm identity:581
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 462

               
               
               Conread position:13-798
               
               
               Cow position:chr14:30597246-30596472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:798
               
               
               Alignm identity:563
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 91

               
               
               Conread position:17-798
               
               
               Cow position:chr14:50109712-50110478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:787
               
               
               Alignm identity:550
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 25

               
               
               Conread position:22-258
               
               
               Cow position:chr14:10561769-10562005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:22-258
               
               
               Cow position:chr14:33394666-33394430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:22-300
               
               
               Cow position:chr14:17241378-17241650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):189, 0

               
               
               Conread position:22-321
               
               
               Cow position:chr14:2283130-2283424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:205
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:22-324
               
               
               Cow position:chr14:50134053-50134349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:22-790
               
               
               Cow position:chr14:30585799-30585048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:770
               
               
               Alignm identity:562
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):557, 338

               
               
               Conread position:22-798
               
               
               Cow position:chr14:749714-750482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:575
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):557, 70

               
               
               Conread position:22-798
               
               
               Cow position:chr14:17492314-17491544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:779
               
               
               Alignm identity:576
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 84

               
               
               Conread position:22-798
               
               
               Cow position:chr14:45672906-45672133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:570
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):555, 189

               
               
               Conread position:23-797
               
               
               Cow position:chr14:5528205-5528974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:575
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 182

               
               
               Conread position:23-797
               
               
               Cow position:chr14:7471514-7472280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:555
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):367, 358

               
               
               Conread position:23-797
               
               
               Cow position:chr14:13302166-13302940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:782
               
               
               Alignm identity:571
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 60

               
               
               Conread position:23-797
               
               
               Cow position:chr14:20781597-20782368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:777
               
               
               Alignm identity:572
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):554, 218

               
               
               Conread position:23-797
               
               
               Cow position:chr14:48255174-48254393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:791
               
               
               Alignm identity:558
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):232, 293

               
               
               Conread position:26-288
               
               
               Cow position:chr14:38145791-38146042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):212, 27

               
               
               Conread position:27-801
               
               
               Cow position:chr14:43552558-43553336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:790
               
               
               Alignm identity:524
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 25

               
               
               Conread position:30-797
               
               
               Cow position:chr14:11155007-11154254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:772
               
               
               Alignm identity:569
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 11

               
               
               Conread position:30-798
               
               
               Cow position:chr14:17001901-17001147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:770
               
               
               Alignm identity:560
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):547, 11

               
               
               Conread position:30-798
               
               
               Cow position:chr14:45833312-45834066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:783
               
               
               Alignm identity:542
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 60

               
               
               Conread position:41-628
               
               
               Cow position:chr14:31607763-31607187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 11

               
               
               Conread position:41-793
               
               
               Cow position:chr14:16274141-16273389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:755
               
               
               Alignm identity:549
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):201, 432

               
               
               Conread position:41-797
               
               
               Cow position:chr14:17684559-17685308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:761
               
               
               Alignm identity:566
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 65

               
               
               Conread position:41-801
               
               
               Cow position:chr14:37223058-37223816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:762
               
               
               Alignm identity:576
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):532, 431

               
               
               Conread position:42-797
               
               
               Cow position:chr14:19329109-19328356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:758
               
               
               Alignm identity:557
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):537, 287

               
               
               Conread position:51-801
               
               
               Cow position:chr14:40338880-40339598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:754
               
               
               Alignm identity:550
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):386, 136

               
               
               Conread position:52-798
               
               
               Cow position:chr14:45205229-45205989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:770
               
               
               Alignm identity:540
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 45

               
               
               Conread position:52-799
               
               
               Cow position:chr14:35928343-35929085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:761
               
               
               Alignm identity:516
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 221

               
               
               Conread position:52-801
               
               
               Cow position:chr14:14309891-14309159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:765
               
               
               Alignm identity:527
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 21

               
               
               Conread position:58-504
               
               
               Cow position:chr14:47921199-47921623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:289
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:58-800
               
               
               Cow position:chr14:22032509-22031773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:551
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 147

               
               
               Conread position:59-798
               
               
               Cow position:chr14:44685221-44685955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:540
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 413

               
               
               Conread position:63-645
               
               
               Cow position:chr14:44261909-44261334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):244, 9

               
               
               Conread position:67-577
               
               
               Cow position:chr14:44580130-44580610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 41

               
               
               Conread position:67-798
               
               
               Cow position:chr14:22018584-22019305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:739
               
               
               Alignm identity:536
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 265

               
               
               Conread position:68-798
               
               
               Cow position:chr14:33394602-33393864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:535
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 76

               
               
               Conread position:68-798
               
               
               Cow position:chr14:47623756-47624465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:533
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 8

               
               
               Conread position:68-799
               
               
               Cow position:chr14:48150760-48150025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:765
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 37

               
               
               Conread position:69-799
               
               
               Cow position:chr14:40170495-40169789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:739
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 201

               
               
               Conread position:72-426
               
               
               Cow position:chr14:44780717-44780376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):189, 45

               
               
               Conread position:72-648
               
               
               Cow position:chr14:44783057-44782498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:581
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 45

               
               
               Conread position:76-726
               
               
               Cow position:chr14:21742793-21743443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:665
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 118

               
               
               Conread position:76-778
               
               
               Cow position:chr14:46083821-46084508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:708
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 51

               
               
               Conread position:79-648
               
               
               Cow position:chr14:11467795-11468348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):498, 11

               
               
               Conread position:80-798
               
               
               Cow position:chr14:23256552-23257271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:530
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 262

               
               
               Conread position:81-646
               
               
               Cow position:chr14:46669524-46670068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:354
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):47, 139

               
               
               Conread position:82-724
               
               
               Cow position:chr14:41755072-41755682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:645
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):268, 97

               
               
               Conread position:83-798
               
               
               Cow position:chr14:27993077-27992403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:475
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 80

               
               
               Conread position:90-329
               
               
               Cow position:chr14:15277652-15277407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):13, 46

               
               
               Conread position:90-530
               
               
               Cow position:chr14:41670938-41671376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:289
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):126, 18

               
               
               Conread position:93-679
               
               
               Cow position:chr14:45079745-45080313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:588
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):484, 159

               
               
               Conread position:97-369
               
               
               Cow position:chr14:41085595-41085328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:197
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):202, 0

               
               
               Conread position:97-783
               
               
               Cow position:chr14:23260717-23260030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 11

               
               
               Conread position:97-801
               
               
               Cow position:chr14:45712765-45712076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:711
               
               
               Alignm identity:529
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 10

               
               
               Conread position:98-324
               
               
               Cow position:chr14:1499967-1500193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):63, 17

               
               
               Conread position:100-801
               
               
               Cow position:chr14:47589094-47589782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:709
               
               
               Alignm identity:467
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):230, 20

               
               
               Conread position:101-650
               
               
               Cow position:chr14:145817-146363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:564
               
               
               Alignm identity:355
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):36, 40

               
               
               Conread position:101-789
               
               
               Cow position:chr14:47640368-47641042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:693
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 47

               
               
               Conread position:104-798
               
               
               Cow position:chr14:9044784-9045478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:696
               
               
               Alignm identity:517
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):475, 369

               
               
               Conread position:108-798
               
               
               Cow position:chr14:13660769-13660074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:704
               
               
               Alignm identity:523
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 308

               
               
               Conread position:110-400
               
               
               Cow position:chr14:34774827-34775109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:194
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):91, 37

               
               
               Conread position:110-797
               
               
               Cow position:chr14:41491088-41490388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:711
               
               
               Alignm identity:461
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 29

               
               
               Conread position:110-798
               
               
               Cow position:chr14:29048669-29047991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:691
               
               
               Alignm identity:523
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 87

               
               
               Conread position:112-800
               
               
               Cow position:chr14:23529765-23529096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:705
               
               
               Alignm identity:454
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):464, 65

               
               
               Conread position:118-800
               
               
               Cow position:chr14:44130161-44130827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 67

               
               
               Conread position:118-801
               
               
               Cow position:chr14:36967491-36968170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:686
               
               
               Alignm identity:522
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 249

               
               
               Conread position:119-801
               
               
               Cow position:chr14:45850462-45851137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:684
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):460, 206

               
               
               Conread position:122-798
               
               
               Cow position:chr14:23690989-23690317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:681
               
               
               Alignm identity:516
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 265

               
               
               Conread position:123-801
               
               
               Cow position:chr14:48406419-48405774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:683
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 52

               
               
               Conread position:125-801
               
               
               Cow position:chr14:44856185-44855512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:678
               
               
               Alignm identity:519
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):452, 303

               
               
               Conread position:136-801
               
               
               Cow position:chr14:13326858-13326230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:670
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 120

               
               
               Conread position:139-798
               
               
               Cow position:chr14:7831280-7830628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:662
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 46

               
               
               Conread position:140-378
               
               
               Cow position:chr14:13778119-13778357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:171
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:152-798
               
               
               Cow position:chr14:16920415-16919778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:648
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):427, 208

               
               
               Conread position:152-801
               
               
               Cow position:chr14:45767275-45767917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:653
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 66

               
               
               Conread position:170-726
               
               
               Cow position:chr14:36169763-36170315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:354
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):68, 82

               
               
               Conread position:174-798
               
               
               Cow position:chr14:44421847-44422466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):405, 141

               
               
               Conread position:198-798
               
               
               Cow position:chr14:42151638-42152235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):387, 6

               
               
               Conread position:221-801
               
               
               Cow position:chr14:43034540-43033979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):357, 29

               
               
               Conread position:228-801
               
               
               Cow position:chr14:12608555-12609095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 55

               
               
               Conread position:235-801
               
               
               Cow position:chr14:16845803-16846351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 30

               
               
               Conread position:260-800
               
               
               Cow position:chr14:47654126-47654654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 73

               
               
               Conread position:264-575
               
               
               Cow position:chr14:13622231-13621922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):277, 17

               
               
               Conread position:275-798
               
               
               Cow position:chr14:45303970-45303452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):304, 53

               
               
               Conread position:279-424
               
               
               Cow position:chr14:37414554-37414409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:291-793
               
               
               Cow position:chr14:45029707-45029217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:303-801
               
               
               Cow position:chr14:38816779-38816295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):242, 28

               
               
               Conread position:305-798
               
               
               Cow position:chr14:23901381-23900888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 168

               
               
               Conread position:310-798
               
               
               Cow position:chr14:2283764-2284251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 163

               
               
               Conread position:318-502
               
               
               Cow position:chr14:1500463-1500645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):11, 146

               
               
               Conread position:318-791
               
               
               Cow position:chr14:46464503-46464977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):261, 155

               
               
               Conread position:318-798
               
               
               Cow position:chr14:50134505-50134986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 92

               
               
               Conread position:319-797
               
               
               Cow position:chr14:15277144-15276668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):260, 109

               
               
               Conread position:321-801
               
               
               Cow position:chr14:30707232-30706776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 162

               
               
               Conread position:322-523
               
               
               Cow position:chr14:48824053-48824250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):63, 105

               
               
               Conread position:342-777
               
               
               Cow position:chr14:31887135-31887560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):235, 86

               
               
               Conread position:347-648
               
               
               Cow position:chr14:29265496-29265196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):230, 32

               
               
               Conread position:374-798
               
               
               Cow position:chr14:41085294-41084869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 99

               
               
               Conread position:375-797
               
               
               Cow position:chr14:13778456-13778867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 56

               
               
               Conread position:395-801
               
               
               Cow position:chr14:9102583-9102206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:284
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):135, 13

               
               
               Conread position:406-794
               
               
               Cow position:chr14:13864563-13864174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 67

               
               
               Conread position:416-801
               
               
               Cow position:chr14:41407352-41407731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 57

               
               
               Conread position:417-779
               
               
               Cow position:chr14:42123653-42123305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:257
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):162, 56

               
               
               Conread position:438-783
               
               
               Cow position:chr14:13480175-13479836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 35

               
               
               Conread position:443-801
               
               
               Cow position:chr14:37414331-37413973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 30

               
               
               Conread position:467-794
               
               
               Cow position:chr14:22242464-22242789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 6

               
               
               Conread position:470-798
               
               
               Cow position:chr14:44551465-44551794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 85

               
               
               Conread position:472-798
               
               
               Cow position:chr14:19619811-19620132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 32

               
               
               Conread position:482-803
               
               
               Cow position:chr14:5511415-5511741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 139

               
               
               Conread position:495-798
               
               
               Cow position:chr14:44287642-44287338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:498-801
               
               
               Cow position:chr14:34775142-34775439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 30

               
               
               Conread position:540-697
               
               
               Cow position:chr14:42198245-42198400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):39, 64

               
               
               Conread position:541-801
               
               
               Cow position:chr14:38146238-38146490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 118

               
               
               Conread position:543-801
               
               
               Cow position:chr14:38040539-38040791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):35, 49

               
               
               Conread position:556-801
               
               
               Cow position:chr14:32534076-32533845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):22, 34

               
               
               Conread position:556-801
               
               
               Cow position:chr14:45771105-45770864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:561-758
               
               
               Cow position:chr14:48824257-48824455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:156
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:578-797
               
               
               Cow position:chr14:45160790-45161009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):216, 50

               
               
               Conread position:578-798
               
               
               Cow position:chr14:5201389-5201169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:578-804
               
               
               Cow position:chr14:44580649-44580868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):179, 8

               
               
               Conread position:591-801
               
               
               Cow position:chr14:33675517-33675727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:167
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 5

               
               
               Conread position:593-798
               
               
               Cow position:chr14:13621442-13621235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:161
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:607-798
               
               
               Cow position:chr14:45565046-45565240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:153
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:617-797
               
               
               Cow position:chr14:12743337-12743156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):177, 0

               
               
               Conread position:642-798
               
               
               Cow position:chr14:29225654-29225499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):151, 0

               
               
               Conread position:673-798
               
               
               Cow position:chr14:43557223-43557348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:673-798
               
               
               Cow position:chr14:45080833-45080957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:103
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:1-241
               
               
               Cow position:chr15:52635288-52635523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:1-797
               
               
               Cow position:chr15:327534-328339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:826
               
               
               Alignm identity:551
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):435, 14

               
               
               Conread position:1-798
               
               
               Cow position:chr15:14583487-14582706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:811
               
               
               Alignm identity:571
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 18

               
               
               Conread position:2-313
               
               
               Cow position:chr15:6456409-6456719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:214
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:2-371
               
               
               Cow position:chr15:6387171-6386806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:2-378
               
               
               Cow position:chr15:2923638-2924011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):240, 88

               
               
               Conread position:2-432
               
               
               Cow position:chr15:21448198-21448609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:289
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):14, 53

               
               
               Conread position:2-509
               
               
               Cow position:chr15:370552-370031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 100

               
               
               Conread position:2-624
               
               
               Cow position:chr15:49676165-49676753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 75

               
               
               Conread position:2-654
               
               
               Cow position:chr15:10479565-10478927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:664
               
               
               Alignm identity:449
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 15

               
               
               Conread position:2-667
               
               
               Cow position:chr15:21816618-21815962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:670
               
               
               Alignm identity:466
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):379, 34

               
               
               Conread position:2-708
               
               
               Cow position:chr15:32723054-32722363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:476
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 30

               
               
               Conread position:2-710
               
               
               Cow position:chr15:32680433-32679731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 29

               
               
               Conread position:2-765
               
               
               Cow position:chr15:51799871-51800605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:769
               
               
               Alignm identity:535
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 52

               
               
               Conread position:2-797
               
               
               Cow position:chr15:4960776-4961541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:806
               
               
               Alignm identity:553
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 136

               
               
               Conread position:2-797
               
               
               Cow position:chr15:8098607-8099401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:804
               
               
               Alignm identity:579
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):290, 35

               
               
               Conread position:2-797
               
               
               Cow position:chr15:32692671-32693452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:811
               
               
               Alignm identity:570
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 28

               
               
               Conread position:2-798
               
               
               Cow position:chr15:2011215-2011995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:799
               
               
               Alignm identity:575
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):459, 34

               
               
               Conread position:2-798
               
               
               Cow position:chr15:53338182-53338937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:799
               
               
               Alignm identity:575
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):407, 66

               
               
               Conread position:2-799
               
               
               Cow position:chr15:35649076-35648321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:799
               
               
               Alignm identity:570
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):577, 54

               
               
               Conread position:2-801
               
               
               Cow position:chr15:36641757-36642531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:805
               
               
               Alignm identity:598
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 74

               
               
               Conread position:2-804
               
               
               Cow position:chr15:1763212-1764009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:808
               
               
               Alignm identity:571
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):228, 88

               
               
               Conread position:3-772
               
               
               Cow position:chr15:35734593-35735341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:771
               
               
               Alignm identity:567
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):576, 27

               
               
               Conread position:4-797
               
               
               Cow position:chr15:6156838-6156040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:805
               
               
               Alignm identity:565
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):347, 133

               
               
               Conread position:5-624
               
               
               Cow position:chr15:317206-316613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 37

               
               
               Conread position:5-784
               
               
               Cow position:chr15:42935839-42936613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:781
               
               
               Alignm identity:563
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):574, 154

               
               
               Conread position:12-355
               
               
               Cow position:chr15:38957895-38957550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):203, 40

               
               
               Conread position:12-798
               
               
               Cow position:chr15:17272249-17271483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:799
               
               
               Alignm identity:556
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 33

               
               
               Conread position:13-464
               
               
               Cow position:chr15:6594694-6594246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 84

               
               
               Conread position:13-798
               
               
               Cow position:chr15:689947-690703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:789
               
               
               Alignm identity:576
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 154

               
               
               Conread position:18-754
               
               
               Cow position:chr15:44827943-44828687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:754
               
               
               Alignm identity:524
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 192

               
               
               Conread position:19-784
               
               
               Cow position:chr15:17040114-17039358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:768
               
               
               Alignm identity:553
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 126

               
               
               Conread position:19-797
               
               
               Cow position:chr15:7836377-7837157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:785
               
               
               Alignm identity:577
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 24

               
               
               Conread position:20-798
               
               
               Cow position:chr15:50124798-50124028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:782
               
               
               Alignm identity:567
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 112

               
               
               Conread position:21-585
               
               
               Cow position:chr15:2593660-2593114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):556, 190

               
               
               Conread position:22-241
               
               
               Cow position:chr15:2640837-2641051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):189, 0

               
               
               Conread position:22-270
               
               
               Cow position:chr15:8673408-8673161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):221, 0

               
               
               Conread position:22-345
               
               
               Cow position:chr15:4143618-4143299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:22-400
               
               
               Cow position:chr15:7186898-7186522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):335, 241

               
               
               Conread position:22-485
               
               
               Cow position:chr15:32709686-32710145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 185

               
               
               Conread position:22-506
               
               
               Cow position:chr15:50144637-50145123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 345

               
               
               Conread position:22-584
               
               
               Cow position:chr15:11598973-11598414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:565
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 224

               
               
               Conread position:22-617
               
               
               Cow position:chr15:55347-55934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):332, 158

               
               
               Conread position:22-657
               
               
               Cow position:chr15:22204975-22204340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:638
               
               
               Alignm identity:456
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 205

               
               
               Conread position:22-663
               
               
               Cow position:chr15:13428187-13428818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:644
               
               
               Alignm identity:461
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 189

               
               
               Conread position:22-686
               
               
               Cow position:chr15:21878215-21877555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:667
               
               
               Alignm identity:474
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 205

               
               
               Conread position:22-738
               
               
               Cow position:chr15:22920274-22920979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:527
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):329, 25

               
               
               Conread position:22-794
               
               
               Cow position:chr15:7259766-7260535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:547
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 134

               
               
               Conread position:22-797
               
               
               Cow position:chr15:17081041-17080288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:559
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):557, 189

               
               
               Conread position:22-797
               
               
               Cow position:chr15:20748551-20749329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:781
               
               
               Alignm identity:579
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 455

               
               
               Conread position:22-798
               
               
               Cow position:chr15:1520008-1519236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:781
               
               
               Alignm identity:571
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 315

               
               
               Conread position:22-798
               
               
               Cow position:chr15:1781401-1782168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:779
               
               
               Alignm identity:567
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 180

               
               
               Conread position:22-798
               
               
               Cow position:chr15:2648515-2647742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:572
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):557, 77

               
               
               Conread position:22-798
               
               
               Cow position:chr15:6554714-6553943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:779
               
               
               Alignm identity:576
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 182

               
               
               Conread position:22-798
               
               
               Cow position:chr15:7544020-7544795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:781
               
               
               Alignm identity:569
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 63

               
               
               Conread position:22-798
               
               
               Cow position:chr15:18268836-18268073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:562
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):557, 152

               
               
               Conread position:23-532
               
               
               Cow position:chr15:44068938-44069440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:23-790
               
               
               Cow position:chr15:2075799-2076553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:769
               
               
               Alignm identity:548
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):550, 153

               
               
               Conread position:23-797
               
               
               Cow position:chr15:15347981-15347206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:777
               
               
               Alignm identity:570
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):556, 450

               
               
               Conread position:23-797
               
               
               Cow position:chr15:42490345-42491117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:779
               
               
               Alignm identity:559
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):315, 189

               
               
               Conread position:23-798
               
               
               Cow position:chr15:4764354-4765118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:551
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):315, 227

               
               
               Conread position:23-803
               
               
               Cow position:chr15:24294238-24295012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:784
               
               
               Alignm identity:574
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):554, 59

               
               
               Conread position:27-525
               
               
               Cow position:chr15:20080365-20079865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 34

               
               
               Conread position:28-798
               
               
               Cow position:chr15:28490988-28490227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:777
               
               
               Alignm identity:565
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):348, 183

               
               
               Conread position:30-801
               
               
               Cow position:chr15:2006688-2007450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:783
               
               
               Alignm identity:520
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 22

               
               
               Conread position:32-794
               
               
               Cow position:chr15:1771650-1772408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:764
               
               
               Alignm identity:565
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):546, 302

               
               
               Conread position:37-511
               
               
               Cow position:chr15:35754666-35754203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:38-270
               
               
               Cow position:chr15:21666865-21666633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:38-784
               
               
               Cow position:chr15:18575878-18576613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:751
               
               
               Alignm identity:551
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 69

               
               
               Conread position:38-803
               
               
               Cow position:chr15:4384429-4385188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:769
               
               
               Alignm identity:554
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):539, 434

               
               
               Conread position:38-803
               
               
               Cow position:chr15:4681380-4682151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:551
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 138

               
               
               Conread position:41-531
               
               
               Cow position:chr15:7933138-7933610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:41-755
               
               
               Cow position:chr15:525693-524979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):304, 20

               
               
               Conread position:41-784
               
               
               Cow position:chr15:18333665-18332929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:549
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):536, 65

               
               
               Conread position:41-797
               
               
               Cow position:chr15:12422006-12421252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:761
               
               
               Alignm identity:555
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 28

               
               
               Conread position:41-797
               
               
               Cow position:chr15:32495225-32494473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:759
               
               
               Alignm identity:541
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):538, 41

               
               
               Conread position:41-797
               
               
               Cow position:chr15:37391665-37392405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:761
               
               
               Alignm identity:559
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 164

               
               
               Conread position:41-797
               
               
               Cow position:chr15:51215750-51216502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:760
               
               
               Alignm identity:557
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 396

               
               
               Conread position:47-795
               
               
               Cow position:chr15:4794837-4795587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:765
               
               
               Alignm identity:549
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 215

               
               
               Conread position:53-797
               
               
               Cow position:chr15:31358073-31358799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:748
               
               
               Alignm identity:540
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 152

               
               
               Conread position:59-798
               
               
               Cow position:chr15:10887786-10888518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:741
               
               
               Alignm identity:516
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):515, 163

               
               
               Conread position:65-758
               
               
               Cow position:chr15:38979101-38979792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:696
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 34

               
               
               Conread position:67-789
               
               
               Cow position:chr15:4630728-4630015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 23

               
               
               Conread position:67-797
               
               
               Cow position:chr15:19738864-19738140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:736
               
               
               Alignm identity:540
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 39

               
               
               Conread position:67-798
               
               
               Cow position:chr15:7233503-7234216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:736
               
               
               Alignm identity:530
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 37

               
               
               Conread position:67-799
               
               
               Cow position:chr15:17787960-17787254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:737
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 34

               
               
               Conread position:67-804
               
               
               Cow position:chr15:1662582-1663289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:743
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):339, 28

               
               
               Conread position:68-746
               
               
               Cow position:chr15:29020927-29021597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:691
               
               
               Alignm identity:427
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):32, 69

               
               
               Conread position:69-801
               
               
               Cow position:chr15:12614255-12614979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:737
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 151

               
               
               Conread position:72-798
               
               
               Cow position:chr15:21960698-21961421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:560
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 333

               
               
               Conread position:73-798
               
               
               Cow position:chr15:17219668-17218964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:734
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 29

               
               
               Conread position:76-797
               
               
               Cow position:chr15:4649035-4649740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:526
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):503, 14

               
               
               Conread position:78-798
               
               
               Cow position:chr15:42321221-42320507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:529
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 258

               
               
               Conread position:79-798
               
               
               Cow position:chr15:443810-444522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:531
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):494, 132

               
               
               Conread position:81-801
               
               
               Cow position:chr15:40104650-40105379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:524
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 40

               
               
               Conread position:83-728
               
               
               Cow position:chr15:7789144-7788527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:649
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 52

               
               
               Conread position:85-801
               
               
               Cow position:chr15:24793258-24793963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:547
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 16

               
               
               Conread position:88-798
               
               
               Cow position:chr15:36970134-36970838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:529
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 8

               
               
               Conread position:91-757
               
               
               Cow position:chr15:3262196-3261543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:668
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):477, 115

               
               
               Conread position:91-798
               
               
               Cow position:chr15:17291662-17292351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:711
               
               
               Alignm identity:519
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 155

               
               
               Conread position:92-502
               
               
               Cow position:chr15:685373-685787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 49

               
               
               Conread position:93-367
               
               
               Cow position:chr15:1236613-1236889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):160, 50

               
               
               Conread position:97-511
               
               
               Cow position:chr15:10787876-10787469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):331, 146

               
               
               Conread position:97-532
               
               
               Cow position:chr15:6371625-6371204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:97-798
               
               
               Cow position:chr15:6077951-6078654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 47

               
               
               Conread position:97-798
               
               
               Cow position:chr15:6278038-6277346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:708
               
               
               Alignm identity:528
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):243, 18

               
               
               Conread position:97-798
               
               
               Cow position:chr15:8001034-8000320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:520
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 239

               
               
               Conread position:99-797
               
               
               Cow position:chr15:3038309-3037599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:516
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 16

               
               
               Conread position:100-630
               
               
               Cow position:chr15:45886028-45886535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:100-785
               
               
               Cow position:chr15:5955244-5954594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:695
               
               
               Alignm identity:445
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):216, 48

               
               
               Conread position:100-797
               
               
               Cow position:chr15:39439670-39438985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:449
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 45

               
               
               Conread position:100-801
               
               
               Cow position:chr15:7927849-7928537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:711
               
               
               Alignm identity:480
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 36

               
               
               Conread position:100-801
               
               
               Cow position:chr15:18023559-18022860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:467
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 161

               
               
               Conread position:101-333
               
               
               Cow position:chr15:53579114-53578881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):49, 44

               
               
               Conread position:101-423
               
               
               Cow position:chr15:3565255-3564934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):43, 49

               
               
               Conread position:103-794
               
               
               Cow position:chr15:4677724-4678386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:694
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 109

               
               
               Conread position:105-422
               
               
               Cow position:chr15:20837789-20838101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):49, 21

               
               
               Conread position:105-535
               
               
               Cow position:chr15:6781063-6780644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:274
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):112, 61

               
               
               Conread position:105-754
               
               
               Cow position:chr15:2677077-2676442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:664
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):238, 145

               
               
               Conread position:105-801
               
               
               Cow position:chr15:8407793-8408471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:706
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 66

               
               
               Conread position:108-519
               
               
               Cow position:chr15:5910939-5910523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:287
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):23, 36

               
               
               Conread position:108-647
               
               
               Cow position:chr15:3843594-3843064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:543
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 7

               
               
               Conread position:108-798
               
               
               Cow position:chr15:36648140-36648821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:693
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 13

               
               
               Conread position:113-333
               
               
               Cow position:chr15:16540548-16540763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):102, 86

               
               
               Conread position:113-798
               
               
               Cow position:chr15:4195678-4196377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:703
               
               
               Alignm identity:526
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 131

               
               
               Conread position:115-704
               
               
               Cow position:chr15:35578781-35578206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:370
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):100, 34

               
               
               Conread position:115-798
               
               
               Cow position:chr15:41365413-41366088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:686
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 235

               
               
               Conread position:116-488
               
               
               Cow position:chr15:35681425-35681069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:247
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):265, 85

               
               
               Conread position:118-378
               
               
               Cow position:chr15:6650812-6650564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):124, 132

               
               
               Conread position:118-798
               
               
               Cow position:chr15:35747528-35748207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:528
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 363

               
               
               Conread position:126-740
               
               
               Cow position:chr15:13481752-13481132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:637
               
               
               Alignm identity:392
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):31, 9

               
               
               Conread position:132-323
               
               
               Cow position:chr15:25789942-25789751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:135-798
               
               
               Cow position:chr15:4670675-4671342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:676
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):325, 109

               
               
               Conread position:137-798
               
               
               Cow position:chr15:7894946-7894318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:664
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 206

               
               
               Conread position:139-797
               
               
               Cow position:chr15:4921403-4922064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:669
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 16

               
               
               Conread position:139-798
               
               
               Cow position:chr15:23157574-23156929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:666
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 31

               
               
               Conread position:149-593
               
               
               Cow position:chr15:496337-496773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:284
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):197, 101

               
               
               Conread position:157-424
               
               
               Cow position:chr15:24715369-24715632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):80, 100

               
               
               Conread position:159-701
               
               
               Cow position:chr15:16506892-16507420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:550
               
               
               Alignm identity:354
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):78, 92

               
               
               Conread position:164-798
               
               
               Cow position:chr15:6472623-6472003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:637
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):414, 47

               
               
               Conread position:169-798
               
               
               Cow position:chr15:4733149-4733772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 115

               
               
               Conread position:169-799
               
               
               Cow position:chr15:20357979-20357373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:638
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 37

               
               
               Conread position:177-798
               
               
               Cow position:chr15:8749725-8750339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 229

               
               
               Conread position:221-665
               
               
               Cow position:chr15:1253652-1254077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:222-801
               
               
               Cow position:chr15:324286-324853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:584
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 23

               
               
               Conread position:228-796
               
               
               Cow position:chr15:13072609-13073171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:590
               
               
               Alignm identity:374
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):13, 28

               
               
               Conread position:236-493
               
               
               Cow position:chr15:5070898-5070651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):18, 32

               
               
               Conread position:238-481
               
               
               Cow position:chr15:6326815-6326582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:244-798
               
               
               Cow position:chr15:4170331-4169786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:556
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):288, 100

               
               
               Conread position:257-801
               
               
               Cow position:chr15:15266281-15265744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:558
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 163

               
               
               Conread position:262-797
               
               
               Cow position:chr15:21666368-21665833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 123

               
               
               Conread position:275-798
               
               
               Cow position:chr15:7523113-7522580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:541
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 214

               
               
               Conread position:275-801
               
               
               Cow position:chr15:36627255-36626754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:530
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 15

               
               
               Conread position:282-639
               
               
               Cow position:chr15:9428363-9428729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:252
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):178, 41

               
               
               Conread position:293-801
               
               
               Cow position:chr15:32733381-32732877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 118

               
               
               Conread position:294-548
               
               
               Cow position:chr15:13871175-13871428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 0

               
               
               Conread position:305-798
               
               
               Cow position:chr15:4811744-4812232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 43

               
               
               Conread position:308-798
               
               
               Cow position:chr15:29009267-29009753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 165

               
               
               Conread position:322-801
               
               
               Cow position:chr15:28216680-28216214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:298
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):33, 11

               
               
               Conread position:325-771
               
               
               Cow position:chr15:4109472-4109021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:295
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):66, 49

               
               
               Conread position:327-798
               
               
               Cow position:chr15:3010408-3009937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 146

               
               
               Conread position:327-798
               
               
               Cow position:chr15:3888314-3888793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 69

               
               
               Conread position:332-786
               
               
               Cow position:chr15:7306646-7307103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:285
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):69, 77

               
               
               Conread position:335-793
               
               
               Cow position:chr15:51671807-51672257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 93

               
               
               Conread position:348-800
               
               
               Cow position:chr15:32672337-32672798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:296
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):23, 134

               
               
               Conread position:357-801
               
               
               Cow position:chr15:16542144-16542583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 49

               
               
               Conread position:389-801
               
               
               Cow position:chr15:25789462-25789053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 31

               
               
               Conread position:396-798
               
               
               Cow position:chr15:1834948-1834547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 77

               
               
               Conread position:407-798
               
               
               Cow position:chr15:4143300-4142904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 66

               
               
               Conread position:441-611
               
               
               Cow position:chr15:6650368-6650536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):98, 32

               
               
               Conread position:443-798
               
               
               Cow position:chr15:7922082-7921729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 30

               
               
               Conread position:458-798
               
               
               Cow position:chr15:25186369-25186049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 15

               
               
               Conread position:460-801
               
               
               Cow position:chr15:24715806-24716135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 18

               
               
               Conread position:466-797
               
               
               Cow position:chr15:44069503-44069836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 32

               
               
               Conread position:471-801
               
               
               Cow position:chr15:11299227-11298901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):33, 11

               
               
               Conread position:478-612
               
               
               Cow position:chr15:32710315-32710450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:479-801
               
               
               Cow position:chr15:21448895-21449225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 119

               
               
               Conread position:483-797
               
               
               Cow position:chr15:35754000-35753685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 225

               
               
               Conread position:492-789
               
               
               Cow position:chr15:6621950-6622241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:215
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):38, 46

               
               
               Conread position:492-801
               
               
               Cow position:chr15:2802983-2802673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):85, 31

               
               
               Conread position:492-801
               
               
               Cow position:chr15:35680689-35680388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):86, 22

               
               
               Conread position:502-798
               
               
               Cow position:chr15:50146695-50146992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:504-801
               
               
               Cow position:chr15:1236939-1237235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 97

               
               
               Conread position:504-801
               
               
               Cow position:chr15:22151824-22152122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:217
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):43, 24

               
               
               Conread position:519-798
               
               
               Cow position:chr15:6593309-6593031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 91

               
               
               Conread position:530-801
               
               
               Cow position:chr15:6370133-6369863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 0

               
               
               Conread position:530-803
               
               
               Cow position:chr15:2924535-2924805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 22

               
               
               Conread position:532-797
               
               
               Cow position:chr15:7933996-7934243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):16, 80

               
               
               Conread position:532-801
               
               
               Cow position:chr15:370035-369773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 191

               
               
               Conread position:533-798
               
               
               Cow position:chr15:10787482-10787215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:533-800
               
               
               Cow position:chr15:686175-686441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 132

               
               
               Conread position:577-798
               
               
               Cow position:chr15:2589773-2589557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:168
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:577-798
               
               
               Cow position:chr15:2592134-2591918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:168
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:603-798
               
               
               Cow position:chr15:56206-56401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:155
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:608-801
               
               
               Cow position:chr15:498111-498302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:615-798
               
               
               Cow position:chr15:6650259-6650086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:628-801
               
               
               Cow position:chr15:12453160-12453332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:633-801
               
               
               Cow position:chr15:9429277-9429456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:637-798
               
               
               Cow position:chr15:316113-315946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):53, 17

               
               
               Conread position:644-798
               
               
               Cow position:chr15:21623458-21623609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:644-798
               
               
               Cow position:chr15:32710453-32710607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:135
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:653-798
               
               
               Cow position:chr15:1882736-1882592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:657-798
               
               
               Cow position:chr15:5068623-5068764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:677-801
               
               
               Cow position:chr15:5544585-5544709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-416
               
               
               Cow position:chr16:29031699-29032100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:2-498
               
               
               Cow position:chr16:49236335-49235850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 15

               
               
               Conread position:2-500
               
               
               Cow position:chr16:16687651-16688138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 53

               
               
               Conread position:2-623
               
               
               Cow position:chr16:18688346-18687734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):345, 176

               
               
               Conread position:2-625
               
               
               Cow position:chr16:1430002-1430616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:625
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):575, 34

               
               
               Conread position:2-737
               
               
               Cow position:chr16:36232818-36232110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:741
               
               
               Alignm identity:515
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 50

               
               
               Conread position:2-762
               
               
               Cow position:chr16:42051562-42050857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:762
               
               
               Alignm identity:544
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):575, 74

               
               
               Conread position:2-800
               
               
               Cow position:chr16:32934922-32935742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:839
               
               
               Alignm identity:563
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 179

               
               
               Conread position:2-801
               
               
               Cow position:chr16:25084401-25085190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:803
               
               
               Alignm identity:592
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):266, 88

               
               
               Conread position:3-798
               
               
               Cow position:chr16:5660626-5661416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:811
               
               
               Alignm identity:591
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 222

               
               
               Conread position:3-801
               
               
               Cow position:chr16:31593130-31592338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:801
               
               
               Alignm identity:582
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):387, 33

               
               
               Conread position:4-797
               
               
               Cow position:chr16:10204642-10203864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:799
               
               
               Alignm identity:577
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 378

               
               
               Conread position:5-784
               
               
               Cow position:chr16:15565527-15566296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:781
               
               
               Alignm identity:562
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):572, 94

               
               
               Conread position:12-797
               
               
               Cow position:chr16:12539139-12538359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:790
               
               
               Alignm identity:586
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 14

               
               
               Conread position:12-797
               
               
               Cow position:chr16:23253715-23252941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:788
               
               
               Alignm identity:575
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):567, 14

               
               
               Conread position:17-797
               
               
               Cow position:chr16:2728525-2727722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:810
               
               
               Alignm identity:582
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):419, 25

               
               
               Conread position:17-799
               
               
               Cow position:chr16:25157425-25156656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:787
               
               
               Alignm identity:581
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 92

               
               
               Conread position:20-801
               
               
               Cow position:chr16:9929353-9930108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:786
               
               
               Alignm identity:550
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 9

               
               
               Conread position:22-339
               
               
               Cow position:chr16:21185073-21185390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:217
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):193, 205

               
               
               Conread position:22-447
               
               
               Cow position:chr16:10376471-10376057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:251
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:22-636
               
               
               Cow position:chr16:32605617-32606233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 56

               
               
               Conread position:22-678
               
               
               Cow position:chr16:4303671-4303031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:658
               
               
               Alignm identity:453
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):557, 39

               
               
               Conread position:22-786
               
               
               Cow position:chr16:5918273-5919037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:771
               
               
               Alignm identity:570
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 209

               
               
               Conread position:22-798
               
               
               Cow position:chr16:31555-32304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:559
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):557, 99

               
               
               Conread position:22-798
               
               
               Cow position:chr16:28171568-28170797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:781
               
               
               Alignm identity:573
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 128

               
               
               Conread position:22-801
               
               
               Cow position:chr16:6942414-6943201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:789
               
               
               Alignm identity:576
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):551, 450

               
               
               Conread position:23-299
               
               
               Cow position:chr16:14666995-14666719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:189
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:23-442
               
               
               Cow position:chr16:9776930-9777342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:23-797
               
               
               Cow position:chr16:8817312-8816538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:570
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):512, 337

               
               
               Conread position:23-797
               
               
               Cow position:chr16:25440409-25441190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:788
               
               
               Alignm identity:572
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 45

               
               
               Conread position:23-797
               
               
               Cow position:chr16:25458681-25457899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:788
               
               
               Alignm identity:572
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 55

               
               
               Conread position:23-797
               
               
               Cow position:chr16:40297380-40296612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:777
               
               
               Alignm identity:560
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):556, 33

               
               
               Conread position:32-738
               
               
               Cow position:chr16:26518199-26517509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:469
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 15

               
               
               Conread position:33-568
               
               
               Cow position:chr16:9457327-9457841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:544
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 32

               
               
               Conread position:36-797
               
               
               Cow position:chr16:15183613-15184369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:765
               
               
               Alignm identity:564
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):354, 56

               
               
               Conread position:38-797
               
               
               Cow position:chr16:408224-407465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:765
               
               
               Alignm identity:551
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):539, 296

               
               
               Conread position:38-797
               
               
               Cow position:chr16:43898460-43897705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:764
               
               
               Alignm identity:548
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):301, 165

               
               
               Conread position:41-267
               
               
               Cow position:chr16:5589011-5589236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):7, 23

               
               
               Conread position:41-480
               
               
               Cow position:chr16:7676884-7676453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 164

               
               
               Conread position:41-554
               
               
               Cow position:chr16:24881876-24881369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 109

               
               
               Conread position:41-790
               
               
               Cow position:chr16:15491532-15492267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:752
               
               
               Alignm identity:543
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):538, 57

               
               
               Conread position:41-797
               
               
               Cow position:chr16:1568636-1567888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:759
               
               
               Alignm identity:554
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):542, 133

               
               
               Conread position:41-797
               
               
               Cow position:chr16:25340786-25341531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:759
               
               
               Alignm identity:563
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):538, 42

               
               
               Conread position:41-797
               
               
               Cow position:chr16:29045842-29046588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:759
               
               
               Alignm identity:552
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):538, 153

               
               
               Conread position:41-798
               
               
               Cow position:chr16:2484326-2483576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:760
               
               
               Alignm identity:546
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):536, 282

               
               
               Conread position:53-797
               
               
               Cow position:chr16:28472273-28471536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:753
               
               
               Alignm identity:541
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):589, 419

               
               
               Conread position:53-798
               
               
               Cow position:chr16:11051995-11052726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:750
               
               
               Alignm identity:560
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 29

               
               
               Conread position:55-296
               
               
               Cow position:chr16:39818448-39818692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:62-804
               
               
               Cow position:chr16:51685280-51686007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:752
               
               
               Alignm identity:516
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 183

               
               
               Conread position:67-403
               
               
               Cow position:chr16:27004216-27004540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):16, 35

               
               
               Conread position:67-509
               
               
               Cow position:chr16:44964887-44965329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:301
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):56, 137

               
               
               Conread position:67-514
               
               
               Cow position:chr16:29982111-29982565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:296
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):68, 157

               
               
               Conread position:68-801
               
               
               Cow position:chr16:23670743-23670065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:737
               
               
               Alignm identity:466
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):59, 22

               
               
               Conread position:68-801
               
               
               Cow position:chr16:49257732-49257014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:555
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 33

               
               
               Conread position:70-663
               
               
               Cow position:chr16:5888342-5888897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):278, 106

               
               
               Conread position:72-448
               
               
               Cow position:chr16:19714008-19713631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 268

               
               
               Conread position:78-701
               
               
               Cow position:chr16:40887416-40886791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:642
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 12

               
               
               Conread position:78-793
               
               
               Cow position:chr16:2239878-2239179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):469, 14

               
               
               Conread position:79-383
               
               
               Cow position:chr16:16029616-16029912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:79-398
               
               
               Cow position:chr16:14422566-14422883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):137, 17

               
               
               Conread position:82-339
               
               
               Cow position:chr16:15369295-15369542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):48, 9

               
               
               Conread position:83-797
               
               
               Cow position:chr16:26662609-26663315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:530
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 17

               
               
               Conread position:92-596
               
               
               Cow position:chr16:25152641-25153127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 86

               
               
               Conread position:92-608
               
               
               Cow position:chr16:29676443-29675934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 110

               
               
               Conread position:92-634
               
               
               Cow position:chr16:54647196-54647719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:543
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:99-798
               
               
               Cow position:chr16:20255438-20254745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:701
               
               
               Alignm identity:538
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):480, 161

               
               
               Conread position:100-731
               
               
               Cow position:chr16:55111975-55111344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:642
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 79

               
               
               Conread position:100-796
               
               
               Cow position:chr16:41559554-41560215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:701
               
               
               Alignm identity:478
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 47

               
               
               Conread position:105-797
               
               
               Cow position:chr16:13001988-13002667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:711
               
               
               Alignm identity:450
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):23, 34

               
               
               Conread position:108-526
               
               
               Cow position:chr16:55080474-55080064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:261
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):138, 110

               
               
               Conread position:108-604
               
               
               Cow position:chr16:14669171-14669663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:319
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):106, 194

               
               
               Conread position:108-659
               
               
               Cow position:chr16:56164685-56165228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:562
               
               
               Alignm identity:341
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):17, 112

               
               
               Conread position:110-390
               
               
               Cow position:chr16:49385012-49385285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):34, 40

               
               
               Conread position:110-777
               
               
               Cow position:chr16:10437137-10437788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:669
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):467, 207

               
               
               Conread position:113-801
               
               
               Cow position:chr16:42740533-42739856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:693
               
               
               Alignm identity:519
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 19

               
               
               Conread position:118-798
               
               
               Cow position:chr16:6549633-6548958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:682
               
               
               Alignm identity:529
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):461, 157

               
               
               Conread position:118-798
               
               
               Cow position:chr16:7905531-7906185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:682
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):461, 190

               
               
               Conread position:121-800
               
               
               Cow position:chr16:47562587-47563260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:692
               
               
               Alignm identity:473
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 52

               
               
               Conread position:125-798
               
               
               Cow position:chr16:36282291-36282963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:683
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 296

               
               
               Conread position:131-790
               
               
               Cow position:chr16:23982212-23982868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:661
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):446, 336

               
               
               Conread position:133-780
               
               
               Cow position:chr16:27734902-27734253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:651
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):444, 339

               
               
               Conread position:138-801
               
               
               Cow position:chr16:28438863-28438217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:669
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):441, 73

               
               
               Conread position:170-776
               
               
               Cow position:chr16:5295820-5296421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 127

               
               
               Conread position:221-798
               
               
               Cow position:chr16:2411979-2411403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):292, 207

               
               
               Conread position:225-796
               
               
               Cow position:chr16:42144398-42144955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:581
               
               
               Alignm identity:366
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):93, 133

               
               
               Conread position:233-801
               
               
               Cow position:chr16:10808166-10808719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 112

               
               
               Conread position:235-665
               
               
               Cow position:chr16:16276502-16276074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 195

               
               
               Conread position:262-798
               
               
               Cow position:chr16:25187673-25188208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:538
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):317, 211

               
               
               Conread position:264-797
               
               
               Cow position:chr16:836071-836595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:405
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):315, 17

               
               
               Conread position:266-798
               
               
               Cow position:chr16:36362312-36361796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:537
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):313, 70

               
               
               Conread position:275-794
               
               
               Cow position:chr16:56551173-56551682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):302, 161

               
               
               Conread position:281-462
               
               
               Cow position:chr16:56320888-56321069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):79, 74

               
               
               Conread position:281-739
               
               
               Cow position:chr16:5651802-5652243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):298, 163

               
               
               Conread position:281-801
               
               
               Cow position:chr16:39820689-39821199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:405
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):298, 55

               
               
               Conread position:292-430
               
               
               Cow position:chr16:50875243-50875103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:294-801
               
               
               Cow position:chr16:41758399-41757879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:528
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 40

               
               
               Conread position:296-727
               
               
               Cow position:chr16:11111870-11111447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):281, 42

               
               
               Conread position:298-598
               
               
               Cow position:chr16:29091916-29091621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):232, 160

               
               
               Conread position:305-773
               
               
               Cow position:chr16:11639006-11639482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:323
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):85, 75

               
               
               Conread position:318-798
               
               
               Cow position:chr16:34529413-34529887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):256, 155

               
               
               Conread position:324-699
               
               
               Cow position:chr16:26650528-26650895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):319, 45

               
               
               Conread position:325-797
               
               
               Cow position:chr16:5483416-5483889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 24

               
               
               Conread position:325-804
               
               
               Cow position:chr16:335396-335862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):332, 18

               
               
               Conread position:332-648
               
               
               Cow position:chr16:44388478-44388164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):245, 140

               
               
               Conread position:335-801
               
               
               Cow position:chr16:31376150-31375713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 11

               
               
               Conread position:346-506
               
               
               Cow position:chr16:4441989-4442149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):103, 128

               
               
               Conread position:347-797
               
               
               Cow position:chr16:14666714-14666263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):232, 126

               
               
               Conread position:360-801
               
               
               Cow position:chr16:24454455-24454007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:286
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):92, 78

               
               
               Conread position:409-798
               
               
               Cow position:chr16:16029965-16030350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 69

               
               
               Conread position:414-610
               
               
               Cow position:chr16:29032342-29032537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:155
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):163, 59

               
               
               Conread position:429-669
               
               
               Cow position:chr16:25932418-25932644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):148, 25

               
               
               Conread position:438-801
               
               
               Cow position:chr16:10566073-10565714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 17

               
               
               Conread position:449-718
               
               
               Cow position:chr16:38021317-38021586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):24, 84

               
               
               Conread position:464-801
               
               
               Cow position:chr16:29982681-29983005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:237
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):67, 9

               
               
               Conread position:465-799
               
               
               Cow position:chr16:9777317-9777651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 8

               
               
               Conread position:470-798
               
               
               Cow position:chr16:53045590-53045920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:471-801
               
               
               Cow position:chr16:33611841-33611508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 115

               
               
               Conread position:478-798
               
               
               Cow position:chr16:19713639-19713323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 121

               
               
               Conread position:482-800
               
               
               Cow position:chr16:44966420-44966734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 130

               
               
               Conread position:496-771
               
               
               Cow position:chr16:6966993-6967269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):82, 236

               
               
               Conread position:497-801
               
               
               Cow position:chr16:48681812-48681511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):38, 30

               
               
               Conread position:513-704
               
               
               Cow position:chr16:45797486-45797675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):72, 24

               
               
               Conread position:531-801
               
               
               Cow position:chr16:49235848-49235581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 34

               
               
               Conread position:566-798
               
               
               Cow position:chr16:31831965-31832198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:153
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:566-801
               
               
               Cow position:chr16:18500014-18499784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 32

               
               
               Conread position:589-801
               
               
               Cow position:chr16:30047850-30048063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):152, 43

               
               
               Conread position:595-801
               
               
               Cow position:chr16:52815124-52814923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:609-801
               
               
               Cow position:chr16:29033094-29033286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:155
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):125, 40

               
               
               Conread position:625-799
               
               
               Cow position:chr16:25153123-25153290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:629-801
               
               
               Cow position:chr16:48626631-48626801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):139, 86

               
               
               Conread position:663-804
               
               
               Cow position:chr16:16273403-16273263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:670-780
               
               
               Cow position:chr16:4302890-4302780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:671-801
               
               
               Cow position:chr16:29675939-29675810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:683-801
               
               
               Cow position:chr16:25257055-25257173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-797
               
               
               Cow position:chr17:13929035-13929812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:798
               
               
               Alignm identity:586
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):577, 34

               
               
               Conread position:5-797
               
               
               Cow position:chr17:18104329-18103541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:797
               
               
               Alignm identity:579
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 11

               
               
               Conread position:12-797
               
               
               Cow position:chr17:14893524-14894297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:795
               
               
               Alignm identity:558
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):246, 29

               
               
               Conread position:22-505
               
               
               Cow position:chr17:11782739-11783222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:22-538
               
               
               Cow position:chr17:2578934-2579440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):512, 19

               
               
               Conread position:22-679
               
               
               Cow position:chr17:22160284-22160941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:660
               
               
               Alignm identity:469
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 198

               
               
               Conread position:22-714
               
               
               Cow position:chr17:24780420-24781108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:694
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):555, 80

               
               
               Conread position:22-762
               
               
               Cow position:chr17:249297-250047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:768
               
               
               Alignm identity:525
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):450, 220

               
               
               Conread position:22-794
               
               
               Cow position:chr17:1383443-1382674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:775
               
               
               Alignm identity:576
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 205

               
               
               Conread position:22-797
               
               
               Cow position:chr17:9654081-9653312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:576
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):557, 308

               
               
               Conread position:22-797
               
               
               Cow position:chr17:19269977-19269222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:781
               
               
               Alignm identity:564
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 61

               
               
               Conread position:22-798
               
               
               Cow position:chr17:2249211-2248440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:780
               
               
               Alignm identity:575
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 69

               
               
               Conread position:22-798
               
               
               Cow position:chr17:8208478-8209250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:780
               
               
               Alignm identity:579
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 205

               
               
               Conread position:22-798
               
               
               Cow position:chr17:14217657-14216882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:780
               
               
               Alignm identity:562
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 451

               
               
               Conread position:22-798
               
               
               Cow position:chr17:20666352-20665582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:569
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):555, 69

               
               
               Conread position:22-798
               
               
               Cow position:chr17:43987888-43988677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:799
               
               
               Alignm identity:571
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 247

               
               
               Conread position:22-801
               
               
               Cow position:chr17:15143992-15143220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:790
               
               
               Alignm identity:565
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):261, 145

               
               
               Conread position:22-801
               
               
               Cow position:chr17:15157583-15156817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:782
               
               
               Alignm identity:568
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):326, 61

               
               
               Conread position:23-308
               
               
               Cow position:chr17:6119520-6119805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):102, 115

               
               
               Conread position:23-774
               
               
               Cow position:chr17:16860199-16859448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:766
               
               
               Alignm identity:540
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 34

               
               
               Conread position:24-798
               
               
               Cow position:chr17:4059476-4060243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:779
               
               
               Alignm identity:566
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 312

               
               
               Conread position:24-798
               
               
               Cow position:chr17:31768669-31767895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:775
               
               
               Alignm identity:148
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:29-798
               
               
               Cow position:chr17:2261492-2262246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:772
               
               
               Alignm identity:560
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):510, 182

               
               
               Conread position:30-508
               
               
               Cow position:chr17:40803770-40804250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 11

               
               
               Conread position:30-797
               
               
               Cow position:chr17:3643458-3642692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:771
               
               
               Alignm identity:562
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 11

               
               
               Conread position:30-798
               
               
               Cow position:chr17:24633333-24634098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:772
               
               
               Alignm identity:574
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 206

               
               
               Conread position:41-315
               
               
               Cow position:chr17:12670948-12670677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):23, 11

               
               
               Conread position:41-334
               
               
               Cow position:chr17:6259095-6259382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):51, 42

               
               
               Conread position:45-801
               
               
               Cow position:chr17:14326108-14325366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:765
               
               
               Alignm identity:569
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 278

               
               
               Conread position:53-633
               
               
               Cow position:chr17:15322230-15322788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):517, 270

               
               
               Conread position:57-649
               
               
               Cow position:chr17:35975498-35974915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:363
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):30, 93

               
               
               Conread position:64-697
               
               
               Cow position:chr17:14308895-14308270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:642
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 19

               
               
               Conread position:67-801
               
               
               Cow position:chr17:153038-152329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:518
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 41

               
               
               Conread position:68-797
               
               
               Cow position:chr17:11088306-11087580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:734
               
               
               Alignm identity:540
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 6

               
               
               Conread position:68-799
               
               
               Cow position:chr17:20401093-20401805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:516
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 38

               
               
               Conread position:69-332
               
               
               Cow position:chr17:31200651-31200387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):173, 0

               
               
               Conread position:69-702
               
               
               Cow position:chr17:4671630-4672231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:639
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):264, 23

               
               
               Conread position:69-797
               
               
               Cow position:chr17:16889548-16890266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:735
               
               
               Alignm identity:548
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):508, 23

               
               
               Conread position:69-801
               
               
               Cow position:chr17:4294812-4295490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:70-787
               
               
               Cow position:chr17:2587736-2588438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:737
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 284

               
               
               Conread position:70-801
               
               
               Cow position:chr17:4081067-4081775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:735
               
               
               Alignm identity:531
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 291

               
               
               Conread position:70-801
               
               
               Cow position:chr17:6002600-6001871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 33

               
               
               Conread position:72-334
               
               
               Cow position:chr17:22131356-22131622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:72-533
               
               
               Cow position:chr17:2146639-2147079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 36

               
               
               Conread position:75-798
               
               
               Cow position:chr17:228874-228164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:531
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):504, 114

               
               
               Conread position:78-797
               
               
               Cow position:chr17:25737088-25737807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:539
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):501, 239

               
               
               Conread position:85-798
               
               
               Cow position:chr17:23857616-23856890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:735
               
               
               Alignm identity:550
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 23

               
               
               Conread position:97-327
               
               
               Cow position:chr17:55237-55009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):22, 100

               
               
               Conread position:97-595
               
               
               Cow position:chr17:1284313-1283847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):481, 98

               
               
               Conread position:97-802
               
               
               Cow position:chr17:44853476-44852785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:518
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):283, 10

               
               
               Conread position:100-794
               
               
               Cow position:chr17:15435241-15435931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:696
               
               
               Alignm identity:526
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):483, 134

               
               
               Conread position:102-378
               
               
               Cow position:chr17:32024747-32024472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):222, 0

               
               
               Conread position:104-471
               
               
               Cow position:chr17:39933138-39933499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 0

               
               
               Conread position:107-571
               
               
               Cow position:chr17:28109549-28110004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 100

               
               
               Conread position:108-557
               
               
               Cow position:chr17:15370536-15370974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:108-730
               
               
               Cow position:chr17:18849172-18849774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:384
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):66, 44

               
               
               Conread position:108-740
               
               
               Cow position:chr17:12585180-12584568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:640
               
               
               Alignm identity:403
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):42, 37

               
               
               Conread position:108-798
               
               
               Cow position:chr17:22430024-22429344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:699
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 71

               
               
               Conread position:118-797
               
               
               Cow position:chr17:27345272-27345942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:683
               
               
               Alignm identity:520
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):384, 165

               
               
               Conread position:118-801
               
               
               Cow position:chr17:2286841-2287533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:697
               
               
               Alignm identity:521
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 338

               
               
               Conread position:123-803
               
               
               Cow position:chr17:13857305-13856623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:687
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 356

               
               
               Conread position:132-801
               
               
               Cow position:chr17:35591703-35592361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:672
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):445, 33

               
               
               Conread position:143-657
               
               
               Cow position:chr17:15381496-15381983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:337
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):79, 61

               
               
               Conread position:152-798
               
               
               Cow position:chr17:2173381-2174022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:651
               
               
               Alignm identity:476
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 10

               
               
               Conread position:156-798
               
               
               Cow position:chr17:20088253-20087603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:669
               
               
               Alignm identity:477
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 315

               
               
               Conread position:171-798
               
               
               Cow position:chr17:6089644-6089017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:631
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 65

               
               
               Conread position:177-797
               
               
               Cow position:chr17:15849923-15850541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:461
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 27

               
               
               Conread position:180-485
               
               
               Cow position:chr17:2737905-2738208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:185-798
               
               
               Cow position:chr17:1879623-1880238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:457
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 72

               
               
               Conread position:218-802
               
               
               Cow position:chr17:1658994-1658418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 39

               
               
               Conread position:219-801
               
               
               Cow position:chr17:42264094-42264648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:585
               
               
               Alignm identity:396
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):341, 25

               
               
               Conread position:224-797
               
               
               Cow position:chr17:14392473-14393065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:382
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):25, 106

               
               
               Conread position:232-763
               
               
               Cow position:chr17:4286676-4287187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 12

               
               
               Conread position:237-790
               
               
               Cow position:chr17:16418253-16417701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 20

               
               
               Conread position:241-798
               
               
               Cow position:chr17:23324856-23324310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:562
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 155

               
               
               Conread position:243-793
               
               
               Cow position:chr17:20183637-20183095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:554
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 111

               
               
               Conread position:266-798
               
               
               Cow position:chr17:1946588-1947113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 208

               
               
               Conread position:266-798
               
               
               Cow position:chr17:18185912-18185391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):311, 193

               
               
               Conread position:318-798
               
               
               Cow position:chr17:22131898-22132372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):261, 107

               
               
               Conread position:319-797
               
               
               Cow position:chr17:6259510-6259988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):260, 154

               
               
               Conread position:322-801
               
               
               Cow position:chr17:7944825-7944330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:314
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):79, 10

               
               
               Conread position:384-801
               
               
               Cow position:chr17:18027027-18026610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 89

               
               
               Conread position:392-772
               
               
               Cow position:chr17:2555861-2556240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 81

               
               
               Conread position:429-685
               
               
               Cow position:chr17:12670672-12670423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):141, 54

               
               
               Conread position:445-774
               
               
               Cow position:chr17:40834546-40834861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):226, 28

               
               
               Conread position:478-801
               
               
               Cow position:chr17:20812498-20812182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):79, 19

               
               
               Conread position:480-803
               
               
               Cow position:chr17:2579457-2579766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 42

               
               
               Conread position:482-801
               
               
               Cow position:chr17:15370873-15371194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 167

               
               
               Conread position:483-798
               
               
               Cow position:chr17:181191-181507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:501-739
               
               
               Cow position:chr17:39933504-39933742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):78, 169

               
               
               Conread position:506-801
               
               
               Cow position:chr17:31199792-31199517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:223
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):17, 106

               
               
               Conread position:511-801
               
               
               Cow position:chr17:18325135-18324851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:210
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):67, 37

               
               
               Conread position:512-803
               
               
               Cow position:chr17:16397505-16397796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):57, 128

               
               
               Conread position:524-800
               
               
               Cow position:chr17:2147045-2147319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:207
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):16, 28

               
               
               Conread position:530-803
               
               
               Cow position:chr17:40804691-40804968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:556-804
               
               
               Cow position:chr17:602523-602288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 88

               
               
               Conread position:578-750
               
               
               Cow position:chr17:26205883-26205711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:142
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:578-804
               
               
               Cow position:chr17:3709280-3709061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:588-739
               
               
               Cow position:chr17:6068568-6068714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:596-798
               
               
               Cow position:chr17:1283763-1283561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:166
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:620-798
               
               
               Cow position:chr17:43952596-43952419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:147
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:623-797
               
               
               Cow position:chr17:15323215-15323389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):171, 84

               
               
               Conread position:628-798
               
               
               Cow position:chr17:34156102-34156272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:143
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:632-801
               
               
               Cow position:chr17:22557600-22557769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):50, 68

               
               
               Conread position:638-768
               
               
               Cow position:chr17:36987687-36987557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:655-798
               
               
               Cow position:chr17:14041044-14040902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:665-771
               
               
               Cow position:chr17:602694-602800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:89
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:675-798
               
               
               Cow position:chr17:20073216-20073102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:2-270
               
               
               Cow position:chr18:29236335-29236603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:187
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-728
               
               
               Cow position:chr18:54024799-54024078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:737
               
               
               Alignm identity:521
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):378, 262

               
               
               Conread position:2-798
               
               
               Cow position:chr18:33335434-33336214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:799
               
               
               Alignm identity:580
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 88

               
               
               Conread position:4-671
               
               
               Cow position:chr18:16660439-16659793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:670
               
               
               Alignm identity:473
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):395, 131

               
               
               Conread position:4-797
               
               
               Cow position:chr18:51480398-51481191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:798
               
               
               Alignm identity:578
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):442, 330

               
               
               Conread position:19-793
               
               
               Cow position:chr18:28974325-28973556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:579
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 24

               
               
               Conread position:22-330
               
               
               Cow position:chr18:23746396-23746089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):189, 214

               
               
               Conread position:22-511
               
               
               Cow position:chr18:51660003-51660481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 81

               
               
               Conread position:22-604
               
               
               Cow position:chr18:44621334-44621917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 61

               
               
               Conread position:22-798
               
               
               Cow position:chr18:16078281-16079069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:796
               
               
               Alignm identity:573
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):465, 115

               
               
               Conread position:22-798
               
               
               Cow position:chr18:19351953-19352734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:788
               
               
               Alignm identity:585
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 233

               
               
               Conread position:22-798
               
               
               Cow position:chr18:33953994-33953223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:783
               
               
               Alignm identity:570
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 199

               
               
               Conread position:22-798
               
               
               Cow position:chr18:47741594-47742370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:569
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):551, 450

               
               
               Conread position:22-803
               
               
               Cow position:chr18:55089348-55088568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:783
               
               
               Alignm identity:571
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):555, 46

               
               
               Conread position:23-339
               
               
               Cow position:chr18:14129872-14130187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 0

               
               
               Conread position:23-797
               
               
               Cow position:chr18:16177029-16176266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:782
               
               
               Alignm identity:550
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 181

               
               
               Conread position:23-797
               
               
               Cow position:chr18:36507910-36508684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:777
               
               
               Alignm identity:573
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):554, 449

               
               
               Conread position:23-797
               
               
               Cow position:chr18:41841248-41840473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:777
               
               
               Alignm identity:579
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):554, 449

               
               
               Conread position:23-798
               
               
               Cow position:chr18:23797228-23797999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:777
               
               
               Alignm identity:569
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):556, 338

               
               
               Conread position:23-803
               
               
               Cow position:chr18:27838720-27837958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:785
               
               
               Alignm identity:561
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):328, 83

               
               
               Conread position:28-798
               
               
               Cow position:chr18:11275507-11274754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:773
               
               
               Alignm identity:568
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 184

               
               
               Conread position:30-462
               
               
               Cow position:chr18:37586079-37585648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 206

               
               
               Conread position:38-466
               
               
               Cow position:chr18:25349633-25350059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:38-797
               
               
               Cow position:chr18:37504658-37505415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:763
               
               
               Alignm identity:563
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):539, 188

               
               
               Conread position:53-357
               
               
               Cow position:chr18:54002111-54002403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:58-774
               
               
               Cow position:chr18:36643334-36642618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:453
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 10

               
               
               Conread position:67-798
               
               
               Cow position:chr18:32293394-32294110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:739
               
               
               Alignm identity:544
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 34

               
               
               Conread position:67-801
               
               
               Cow position:chr18:37599908-37599188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 14

               
               
               Conread position:67-801
               
               
               Cow position:chr18:46878347-46877654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:740
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 65

               
               
               Conread position:70-727
               
               
               Cow position:chr18:24577514-24576855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:674
               
               
               Alignm identity:407
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):80, 51

               
               
               Conread position:72-798
               
               
               Cow position:chr18:43147302-43146574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:565
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 360

               
               
               Conread position:78-520
               
               
               Cow position:chr18:22199326-22199758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:282
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):171, 5

               
               
               Conread position:78-794
               
               
               Cow position:chr18:54172211-54171516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:521
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 87

               
               
               Conread position:82-797
               
               
               Cow position:chr18:14415615-14416327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:535
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):497, 247

               
               
               Conread position:95-634
               
               
               Cow position:chr18:45958352-45958870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:540
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:97-797
               
               
               Cow position:chr18:23944720-23944023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:703
               
               
               Alignm identity:543
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):480, 330

               
               
               Conread position:97-798
               
               
               Cow position:chr18:33358516-33359217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:706
               
               
               Alignm identity:542
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 229

               
               
               Conread position:97-798
               
               
               Cow position:chr18:35335139-35335831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:524
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 34

               
               
               Conread position:97-801
               
               
               Cow position:chr18:39748241-39748932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:708
               
               
               Alignm identity:533
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):396, 18

               
               
               Conread position:99-798
               
               
               Cow position:chr18:48221532-48222230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:703
               
               
               Alignm identity:545
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):442, 63

               
               
               Conread position:101-513
               
               
               Cow position:chr18:48301684-48301286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:270
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):49, 45

               
               
               Conread position:101-575
               
               
               Cow position:chr18:40193280-40193746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:302
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):49, 41

               
               
               Conread position:101-642
               
               
               Cow position:chr18:29899982-29900501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 109

               
               
               Conread position:101-801
               
               
               Cow position:chr18:51237190-51237865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:445
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):42, 31

               
               
               Conread position:108-536
               
               
               Cow position:chr18:16306714-16307136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:273
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):44, 37

               
               
               Conread position:108-572
               
               
               Cow position:chr18:42695235-42695701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:300
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):108, 35

               
               
               Conread position:108-665
               
               
               Cow position:chr18:29069927-29070464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:561
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 110

               
               
               Conread position:108-794
               
               
               Cow position:chr18:51257647-51258331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:695
               
               
               Alignm identity:537
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):239, 26

               
               
               Conread position:109-729
               
               
               Cow position:chr18:18897176-18897776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 39

               
               
               Conread position:110-798
               
               
               Cow position:chr18:47719905-47719232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:695
               
               
               Alignm identity:521
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 230

               
               
               Conread position:115-794
               
               
               Cow position:chr18:51310256-51310931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:691
               
               
               Alignm identity:517
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 100

               
               
               Conread position:115-803
               
               
               Cow position:chr18:33268513-33269181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:692
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 61

               
               
               Conread position:116-798
               
               
               Cow position:chr18:22602157-22602839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:686
               
               
               Alignm identity:521
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 120

               
               
               Conread position:118-798
               
               
               Cow position:chr18:2020009-2019335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:520
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 126

               
               
               Conread position:122-798
               
               
               Cow position:chr18:1520804-1521497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:699
               
               
               Alignm identity:525
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 124

               
               
               Conread position:123-800
               
               
               Cow position:chr18:35802030-35801365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:688
               
               
               Alignm identity:422
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):11, 72

               
               
               Conread position:127-797
               
               
               Cow position:chr18:40478066-40478734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:677
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):281, 74

               
               
               Conread position:131-488
               
               
               Cow position:chr18:32651681-32652036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 211

               
               
               Conread position:136-610
               
               
               Cow position:chr18:17992871-17992401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):442, 175

               
               
               Conread position:139-566
               
               
               Cow position:chr18:27986722-27987146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 0

               
               
               Conread position:149-801
               
               
               Cow position:chr18:9187059-9186420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:657
               
               
               Alignm identity:448
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 76

               
               
               Conread position:152-466
               
               
               Cow position:chr18:19540164-19539855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 61

               
               
               Conread position:170-779
               
               
               Cow position:chr18:44601267-44601851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 55

               
               
               Conread position:170-801
               
               
               Cow position:chr18:17093932-17094555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:643
               
               
               Alignm identity:391
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):133, 90

               
               
               Conread position:188-780
               
               
               Cow position:chr18:16393897-16393312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:405
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):342, 62

               
               
               Conread position:204-797
               
               
               Cow position:chr18:16863836-16864406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):230, 14

               
               
               Conread position:220-751
               
               
               Cow position:chr18:29033981-29033443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:549
               
               
               Alignm identity:337
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):38, 85

               
               
               Conread position:221-797
               
               
               Cow position:chr18:40696010-40695439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:591
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 127

               
               
               Conread position:222-804
               
               
               Cow position:chr18:16877265-16877826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:585
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 32

               
               
               Conread position:226-466
               
               
               Cow position:chr18:51464691-51464457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:228-798
               
               
               Cow position:chr18:16533766-16534330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):313, 87

               
               
               Conread position:234-798
               
               
               Cow position:chr18:6869467-6868907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 87

               
               
               Conread position:235-697
               
               
               Cow position:chr18:43200854-43201305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 95

               
               
               Conread position:249-457
               
               
               Cow position:chr18:54269273-54269477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:255-798
               
               
               Cow position:chr18:53785649-53786189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:549
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 74

               
               
               Conread position:268-514
               
               
               Cow position:chr18:29763279-29763522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):159, 0

               
               
               Conread position:274-786
               
               
               Cow position:chr18:29048741-29048226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 74

               
               
               Conread position:275-798
               
               
               Cow position:chr18:29236647-29237160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):304, 106

               
               
               Conread position:277-798
               
               
               Cow position:chr18:51689458-51689976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):302, 59

               
               
               Conread position:288-801
               
               
               Cow position:chr18:2887181-2886667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 187

               
               
               Conread position:297-455
               
               
               Cow position:chr18:40345472-40345315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:307-636
               
               
               Cow position:chr18:22869616-22869944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):165, 0

               
               
               Conread position:311-798
               
               
               Cow position:chr18:54044836-54044371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):266, 116

               
               
               Conread position:318-622
               
               
               Cow position:chr18:35288402-35288714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 70

               
               
               Conread position:319-741
               
               
               Cow position:chr18:20832716-20833132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:281
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):41, 22

               
               
               Conread position:321-798
               
               
               Cow position:chr18:51341561-51342038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):258, 153

               
               
               Conread position:324-624
               
               
               Cow position:chr18:48452414-48452711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):30, 97

               
               
               Conread position:328-801
               
               
               Cow position:chr18:16385474-16385949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:319
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):43, 18

               
               
               Conread position:348-801
               
               
               Cow position:chr18:36258452-36258001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:310
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):133, 19

               
               
               Conread position:349-741
               
               
               Cow position:chr18:36484155-36484543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:261
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):18, 32

               
               
               Conread position:375-801
               
               
               Cow position:chr18:5980371-5980784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 85

               
               
               Conread position:384-783
               
               
               Cow position:chr18:14130326-14130722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 90

               
               
               Conread position:405-797
               
               
               Cow position:chr18:52650890-52651271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):389, 68

               
               
               Conread position:443-777
               
               
               Cow position:chr18:114391-114721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 31

               
               
               Conread position:455-714
               
               
               Cow position:chr18:25350673-25350933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 18

               
               
               Conread position:458-798
               
               
               Cow position:chr18:24040721-24040380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 15

               
               
               Conread position:460-642
               
               
               Cow position:chr18:8312276-8312457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):117, 18

               
               
               Conread position:462-798
               
               
               Cow position:chr18:51463059-51462727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:472-798
               
               
               Cow position:chr18:19539555-19539233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 56

               
               
               Conread position:473-801
               
               
               Cow position:chr18:54269611-54269929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:239
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):60, 30

               
               
               Conread position:477-726
               
               
               Cow position:chr18:32652250-32652499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 51

               
               
               Conread position:490-801
               
               
               Cow position:chr18:36211070-36210764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 20

               
               
               Conread position:516-801
               
               
               Cow position:chr18:16843267-16842986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:530-751
               
               
               Cow position:chr18:18089390-18089171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 205

               
               
               Conread position:545-801
               
               
               Cow position:chr18:19407278-19407018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):33, 57

               
               
               Conread position:546-797
               
               
               Cow position:chr18:54003616-54003872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 25

               
               
               Conread position:549-797
               
               
               Cow position:chr18:16722638-16722392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):30, 144

               
               
               Conread position:579-798
               
               
               Cow position:chr18:27987193-27987415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 199

               
               
               Conread position:594-798
               
               
               Cow position:chr18:17992273-17992069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:171
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:598-774
               
               
               Cow position:chr18:45958870-45959044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:615-786
               
               
               Cow position:chr18:29763539-29763705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:638-804
               
               
               Cow position:chr18:56462711-56462545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:137
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:656-798
               
               
               Cow position:chr18:24700905-24700761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:668-798
               
               
               Cow position:chr18:51629663-51629791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:2-270
               
               
               Cow position:chr19:544336-544062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:2-349
               
               
               Cow position:chr19:6552980-6553301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):27, 19

               
               
               Conread position:2-446
               
               
               Cow position:chr19:378313-377871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 29

               
               
               Conread position:2-666
               
               
               Cow position:chr19:33992-34640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:670
               
               
               Alignm identity:474
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 33

               
               
               Conread position:2-797
               
               
               Cow position:chr19:4385054-4385825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:800
               
               
               Alignm identity:570
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):543, 34

               
               
               Conread position:2-797
               
               
               Cow position:chr19:32223846-32223093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:799
               
               
               Alignm identity:553
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 29

               
               
               Conread position:2-799
               
               
               Cow position:chr19:76670-75911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:800
               
               
               Alignm identity:573
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):198, 97

               
               
               Conread position:4-727
               
               
               Cow position:chr19:261000-261728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:522
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 25

               
               
               Conread position:5-455
               
               
               Cow position:chr19:35376129-35376572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 47

               
               
               Conread position:12-797
               
               
               Cow position:chr19:39390099-39390864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:789
               
               
               Alignm identity:572
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):378, 14

               
               
               Conread position:22-461
               
               
               Cow position:chr19:685433-685862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 191

               
               
               Conread position:22-578
               
               
               Cow position:chr19:32193164-32193714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):263, 179

               
               
               Conread position:22-798
               
               
               Cow position:chr19:37487-38251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:779
               
               
               Alignm identity:562
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 190

               
               
               Conread position:22-798
               
               
               Cow position:chr19:772192-772955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:779
               
               
               Alignm identity:561
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):326, 73

               
               
               Conread position:22-798
               
               
               Cow position:chr19:7341652-7342424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:779
               
               
               Alignm identity:571
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):220, 289

               
               
               Conread position:22-798
               
               
               Cow position:chr19:28592870-28593619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:784
               
               
               Alignm identity:555
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):229, 71

               
               
               Conread position:22-798
               
               
               Cow position:chr19:32212480-32211717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:575
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):557, 189

               
               
               Conread position:22-798
               
               
               Cow position:chr19:43143299-43144072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:781
               
               
               Alignm identity:568
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 77

               
               
               Conread position:23-663
               
               
               Cow position:chr19:55078331-55078967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:642
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):554, 85

               
               
               Conread position:23-797
               
               
               Cow position:chr19:33941195-33941966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:573
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):554, 76

               
               
               Conread position:29-466
               
               
               Cow position:chr19:52152660-52152237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:36-784
               
               
               Cow position:chr19:28582040-28581317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:752
               
               
               Alignm identity:536
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):280, 47

               
               
               Conread position:38-798
               
               
               Cow position:chr19:40852834-40852082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:762
               
               
               Alignm identity:551
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):539, 434

               
               
               Conread position:41-320
               
               
               Cow position:chr19:33872843-33873117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:196
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):165, 0

               
               
               Conread position:41-797
               
               
               Cow position:chr19:171810-172566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:758
               
               
               Alignm identity:549
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):536, 431

               
               
               Conread position:41-797
               
               
               Cow position:chr19:203562-204317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:763
               
               
               Alignm identity:557
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 169

               
               
               Conread position:41-797
               
               
               Cow position:chr19:10672707-10671951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:758
               
               
               Alignm identity:566
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):536, 431

               
               
               Conread position:53-341
               
               
               Cow position:chr19:350964-350669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):51, 8

               
               
               Conread position:56-641
               
               
               Cow position:chr19:20125249-20125802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:405
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 26

               
               
               Conread position:57-759
               
               
               Cow position:chr19:32244294-32245001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:521
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 171

               
               
               Conread position:58-634
               
               
               Cow position:chr19:548013-548557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:581
               
               
               Alignm identity:376
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):50, 20

               
               
               Conread position:60-687
               
               
               Cow position:chr19:7405813-7405231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:399
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):6, 164

               
               
               Conread position:60-729
               
               
               Cow position:chr19:42299903-42299209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:699
               
               
               Alignm identity:454
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 373

               
               
               Conread position:67-690
               
               
               Cow position:chr19:359867-359260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 147

               
               
               Conread position:67-781
               
               
               Cow position:chr19:40888020-40887316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:522
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):222, 137

               
               
               Conread position:67-804
               
               
               Cow position:chr19:30754802-30755531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:750
               
               
               Alignm identity:515
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 55

               
               
               Conread position:69-341
               
               
               Cow position:chr19:36476991-36477254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:72-400
               
               
               Cow position:chr19:32238227-32237899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):26, 88

               
               
               Conread position:72-514
               
               
               Cow position:chr19:4252730-4252288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 258

               
               
               Conread position:78-784
               
               
               Cow position:chr19:32665169-32665867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:532
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 23

               
               
               Conread position:82-614
               
               
               Cow position:chr19:32183804-32183290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:534
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):495, 229

               
               
               Conread position:86-439
               
               
               Cow position:chr19:42649424-42649079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:236
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):9, 108

               
               
               Conread position:92-789
               
               
               Cow position:chr19:439996-439310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:702
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):238, 383

               
               
               Conread position:95-754
               
               
               Cow position:chr19:20111571-20110944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:665
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 246

               
               
               Conread position:97-604
               
               
               Cow position:chr19:29209222-29209721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 6

               
               
               Conread position:97-696
               
               
               Cow position:chr19:31341379-31341976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:618
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):342, 65

               
               
               Conread position:100-718
               
               
               Cow position:chr19:35978926-35979543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 124

               
               
               Conread position:101-624
               
               
               Cow position:chr19:33326373-33326891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:334
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):19, 110

               
               
               Conread position:105-647
               
               
               Cow position:chr19:5865177-5864635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:554
               
               
               Alignm identity:349
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):78, 106

               
               
               Conread position:108-513
               
               
               Cow position:chr19:1031779-1032169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 118

               
               
               Conread position:108-679
               
               
               Cow position:chr19:30371944-30372511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 10

               
               
               Conread position:108-797
               
               
               Cow position:chr19:36036033-36036690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:692
               
               
               Alignm identity:420
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):106, 114

               
               
               Conread position:109-794
               
               
               Cow position:chr19:416317-417012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:704
               
               
               Alignm identity:525
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 9

               
               
               Conread position:113-797
               
               
               Cow position:chr19:171071-170391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:691
               
               
               Alignm identity:495
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 5

               
               
               Conread position:118-572
               
               
               Cow position:chr19:4533067-4532625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 150

               
               
               Conread position:128-762
               
               
               Cow position:chr19:39688236-39688847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:638
               
               
               Alignm identity:471
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 76

               
               
               Conread position:137-784
               
               
               Cow position:chr19:7488008-7488655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:650
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):257, 267

               
               
               Conread position:169-801
               
               
               Cow position:chr19:7450270-7449670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:637
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 42

               
               
               Conread position:173-770
               
               
               Cow position:chr19:30743851-30744441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:373
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):32, 12

               
               
               Conread position:173-801
               
               
               Cow position:chr19:32202488-32203098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:634
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 34

               
               
               Conread position:196-801
               
               
               Cow position:chr19:893848-893256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:448
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):383, 59

               
               
               Conread position:205-538
               
               
               Cow position:chr19:561732-561412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:234
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):8, 28

               
               
               Conread position:224-798
               
               
               Cow position:chr19:39546413-39546967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 19

               
               
               Conread position:243-777
               
               
               Cow position:chr19:50598579-50599086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:540
               
               
               Alignm identity:342
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):164, 12

               
               
               Conread position:245-804
               
               
               Cow position:chr19:15953665-15954199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:562
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):286, 70

               
               
               Conread position:263-741
               
               
               Cow position:chr19:44759672-44760154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:304
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):40, 134

               
               
               Conread position:266-588
               
               
               Cow position:chr19:27052939-27052623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):311, 64

               
               
               Conread position:266-797
               
               
               Cow position:chr19:15041988-15042512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:540
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 69

               
               
               Conread position:279-664
               
               
               Cow position:chr19:543790-543404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 102

               
               
               Conread position:281-570
               
               
               Cow position:chr19:28376370-28376645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:296-801
               
               
               Cow position:chr19:42248669-42249162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 29

               
               
               Conread position:319-797
               
               
               Cow position:chr19:33873304-33873782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):260, 154

               
               
               Conread position:338-757
               
               
               Cow position:chr19:350387-349976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:345-799
               
               
               Cow position:chr19:6553516-6553956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):232, 83

               
               
               Conread position:348-702
               
               
               Cow position:chr19:32785705-32785355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):54, 62

               
               
               Conread position:360-697
               
               
               Cow position:chr19:7068399-7068715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):95, 27

               
               
               Conread position:375-623
               
               
               Cow position:chr19:18728790-18729031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):202, 73

               
               
               Conread position:389-689
               
               
               Cow position:chr19:32237733-32237440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 39

               
               
               Conread position:441-798
               
               
               Cow position:chr19:687065-687419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 25

               
               
               Conread position:459-798
               
               
               Cow position:chr19:52151814-52151474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 14

               
               
               Conread position:460-799
               
               
               Cow position:chr19:20104731-20105070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 13

               
               
               Conread position:472-801
               
               
               Cow position:chr19:377867-377554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):113, 28

               
               
               Conread position:479-662
               
               
               Cow position:chr19:27038119-27037940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):99, 27

               
               
               Conread position:479-777
               
               
               Cow position:chr19:2274338-2274043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 31

               
               
               Conread position:483-796
               
               
               Cow position:chr19:13114417-13114105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):58, 44

               
               
               Conread position:486-801
               
               
               Cow position:chr19:35376829-35377140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 205

               
               
               Conread position:491-797
               
               
               Cow position:chr19:18521756-18522060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:491-798
               
               
               Cow position:chr19:1032125-1032431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 49

               
               
               Conread position:498-778
               
               
               Cow position:chr19:30428041-30428320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):65, 16

               
               
               Conread position:529-801
               
               
               Cow position:chr19:17018551-17018811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):51, 37

               
               
               Conread position:530-801
               
               
               Cow position:chr19:680529-680259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):49, 35

               
               
               Conread position:531-801
               
               
               Cow position:chr19:352905-352632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:545-798
               
               
               Cow position:chr19:42649010-42648758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 195

               
               
               Conread position:599-801
               
               
               Cow position:chr19:28376641-28376845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:600-798
               
               
               Cow position:chr19:40817545-40817347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:152
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:602-743
               
               
               Cow position:chr19:4532624-4532483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:605-801
               
               
               Cow position:chr19:29209762-29209956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:161
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:614-797
               
               
               Cow position:chr19:5729000-5729185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:148
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:617-789
               
               
               Cow position:chr19:439286-439117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):147, 0

               
               
               Conread position:636-798
               
               
               Cow position:chr19:341416-341577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:137
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:653-803
               
               
               Cow position:chr19:4532418-4532278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:657-795
               
               
               Cow position:chr19:163215-163077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:663-801
               
               
               Cow position:chr19:42906-43044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:667-801
               
               
               Cow position:chr19:27052623-27052491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:681-798
               
               
               Cow position:chr19:5208411-5208528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-268
               
               
               Cow position:chr2:6879187-6879448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):13, 30

               
               
               Conread position:1-800
               
               
               Cow position:chr2:49603742-49604516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:806
               
               
               Alignm identity:545
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 55

               
               
               Conread position:1-800
               
               
               Cow position:chr2:78741155-78741933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:804
               
               
               Alignm identity:573
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):578, 11

               
               
               Conread position:1-801
               
               
               Cow position:chr2:2102430-2101669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:804
               
               
               Alignm identity:586
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):243, 77

               
               
               Conread position:2-261
               
               
               Cow position:chr2:34567681-34567416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):39, 46

               
               
               Conread position:2-461
               
               
               Cow position:chr2:36032051-36031609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 89

               
               
               Conread position:2-564
               
               
               Cow position:chr2:47604791-47604245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):264, 0

               
               
               Conread position:2-607
               
               
               Cow position:chr2:41149075-41149650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):531, 81

               
               
               Conread position:2-612
               
               
               Cow position:chr2:782720-782140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 89

               
               
               Conread position:2-645
               
               
               Cow position:chr2:10733819-10733196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:646
               
               
               Alignm identity:458
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):199, 141

               
               
               Conread position:2-677
               
               
               Cow position:chr2:32458999-32458332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:681
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 29

               
               
               Conread position:2-757
               
               
               Cow position:chr2:202645-201908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:768
               
               
               Alignm identity:552
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 52

               
               
               Conread position:2-776
               
               
               Cow position:chr2:56438704-56437956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:781
               
               
               Alignm identity:560
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):199, 35

               
               
               Conread position:2-797
               
               
               Cow position:chr2:22076804-22077585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:808
               
               
               Alignm identity:582
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 53

               
               
               Conread position:2-797
               
               
               Cow position:chr2:32654358-32655134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:799
               
               
               Alignm identity:590
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):575, 95

               
               
               Conread position:2-797
               
               
               Cow position:chr2:44936062-44935289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:798
               
               
               Alignm identity:593
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):577, 193

               
               
               Conread position:2-797
               
               
               Cow position:chr2:47810036-47810811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:800
               
               
               Alignm identity:580
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):577, 34

               
               
               Conread position:2-798
               
               
               Cow position:chr2:6959757-6960545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:801
               
               
               Alignm identity:583
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):398, 34

               
               
               Conread position:2-798
               
               
               Cow position:chr2:44992271-44991498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:798
               
               
               Alignm identity:575
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):575, 55

               
               
               Conread position:2-801
               
               
               Cow position:chr2:176522-175725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:811
               
               
               Alignm identity:566
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 43

               
               
               Conread position:2-803
               
               
               Cow position:chr2:2357447-2356663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:813
               
               
               Alignm identity:571
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):382, 48

               
               
               Conread position:2-804
               
               
               Cow position:chr2:1673633-1672863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:804
               
               
               Alignm identity:570
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):577, 17

               
               
               Conread position:2-804
               
               
               Cow position:chr2:16288263-16289029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:807
               
               
               Alignm identity:577
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):199, 82

               
               
               Conread position:5-798
               
               
               Cow position:chr2:65939436-65938652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:798
               
               
               Alignm identity:572
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 39

               
               
               Conread position:5-801
               
               
               Cow position:chr2:13046672-13045905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:798
               
               
               Alignm identity:565
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):574, 317

               
               
               Conread position:5-801
               
               
               Cow position:chr2:78761498-78762271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:799
               
               
               Alignm identity:581
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):534, 93

               
               
               Conread position:9-798
               
               
               Cow position:chr2:11160117-11159329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:792
               
               
               Alignm identity:540
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 124

               
               
               Conread position:15-705
               
               
               Cow position:chr2:53552207-53552873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:698
               
               
               Alignm identity:460
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 53

               
               
               Conread position:16-470
               
               
               Cow position:chr2:52651907-52652356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:297
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):38, 140

               
               
               Conread position:19-536
               
               
               Cow position:chr2:12225122-12224611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 24

               
               
               Conread position:19-798
               
               
               Cow position:chr2:81255828-81256603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:794
               
               
               Alignm identity:566
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 186

               
               
               Conread position:22-500
               
               
               Cow position:chr2:8117264-8117750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 19

               
               
               Conread position:22-569
               
               
               Cow position:chr2:67421810-67421276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:550
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):220, 69

               
               
               Conread position:22-695
               
               
               Cow position:chr2:26865516-26864860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:676
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 189

               
               
               Conread position:22-756
               
               
               Cow position:chr2:67015131-67014415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 47

               
               
               Conread position:22-794
               
               
               Cow position:chr2:57334229-57334990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:774
               
               
               Alignm identity:561
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):558, 80

               
               
               Conread position:22-798
               
               
               Cow position:chr2:213200-212423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:789
               
               
               Alignm identity:569
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):311, 70

               
               
               Conread position:22-798
               
               
               Cow position:chr2:2413767-2412998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:566
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):557, 135

               
               
               Conread position:22-798
               
               
               Cow position:chr2:3325544-3324766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:781
               
               
               Alignm identity:563
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 205

               
               
               Conread position:22-798
               
               
               Cow position:chr2:9906956-9907711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:572
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):557, 149

               
               
               Conread position:22-798
               
               
               Cow position:chr2:25031440-25030678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:576
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):555, 80

               
               
               Conread position:22-798
               
               
               Cow position:chr2:26920720-26921494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:779
               
               
               Alignm identity:567
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 86

               
               
               Conread position:22-798
               
               
               Cow position:chr2:39420619-39421377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:780
               
               
               Alignm identity:565
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 69

               
               
               Conread position:22-798
               
               
               Cow position:chr2:41656111-41656880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:780
               
               
               Alignm identity:565
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 118

               
               
               Conread position:22-798
               
               
               Cow position:chr2:44090329-44091099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:779
               
               
               Alignm identity:566
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):555, 189

               
               
               Conread position:22-798
               
               
               Cow position:chr2:47039381-47038616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:779
               
               
               Alignm identity:564
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 159

               
               
               Conread position:22-798
               
               
               Cow position:chr2:51991507-51990732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:779
               
               
               Alignm identity:578
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 205

               
               
               Conread position:22-798
               
               
               Cow position:chr2:52615494-52616270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:779
               
               
               Alignm identity:577
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):517, 450

               
               
               Conread position:22-798
               
               
               Cow position:chr2:57142664-57141888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:780
               
               
               Alignm identity:582
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 214

               
               
               Conread position:22-798
               
               
               Cow position:chr2:59414640-59413882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:574
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):558, 189

               
               
               Conread position:22-798
               
               
               Cow position:chr2:80956618-80955838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:787
               
               
               Alignm identity:577
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):222, 189

               
               
               Conread position:22-800
               
               
               Cow position:chr2:2380151-2380907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:780
               
               
               Alignm identity:559
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 211

               
               
               Conread position:22-801
               
               
               Cow position:chr2:63293543-63292764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:795
               
               
               Alignm identity:544
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 22

               
               
               Conread position:23-313
               
               
               Cow position:chr2:28792082-28792369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):69, 60

               
               
               Conread position:23-533
               
               
               Cow position:chr2:75676839-75676348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:327
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):34, 29

               
               
               Conread position:23-797
               
               
               Cow position:chr2:16899269-16900047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:781
               
               
               Alignm identity:566
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):322, 339

               
               
               Conread position:23-797
               
               
               Cow position:chr2:50984201-50983431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:580
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 124

               
               
               Conread position:23-797
               
               
               Cow position:chr2:53328775-53329544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:777
               
               
               Alignm identity:575
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):556, 306

               
               
               Conread position:23-798
               
               
               Cow position:chr2:52061697-52062465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:777
               
               
               Alignm identity:573
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):556, 59

               
               
               Conread position:23-801
               
               
               Cow position:chr2:10187198-10186430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:783
               
               
               Alignm identity:563
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 85

               
               
               Conread position:23-803
               
               
               Cow position:chr2:28746531-28747264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:786
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 11

               
               
               Conread position:24-797
               
               
               Cow position:chr2:10269631-10268862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:776
               
               
               Alignm identity:565
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):555, 12

               
               
               Conread position:29-450
               
               
               Cow position:chr2:27816803-27817227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 178

               
               
               Conread position:30-797
               
               
               Cow position:chr2:28651193-28650433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:771
               
               
               Alignm identity:549
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 11

               
               
               Conread position:33-798
               
               
               Cow position:chr2:41685547-41686314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:771
               
               
               Alignm identity:560
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 68

               
               
               Conread position:37-670
               
               
               Cow position:chr2:3729782-3730396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:641
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 15

               
               
               Conread position:38-328
               
               
               Cow position:chr2:36979141-36979432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):197, 0

               
               
               Conread position:38-456
               
               
               Cow position:chr2:24921385-24921802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 161

               
               
               Conread position:38-513
               
               
               Cow position:chr2:45214217-45213743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):434, 0

               
               
               Conread position:41-569
               
               
               Cow position:chr2:5519948-5519419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 98

               
               
               Conread position:41-714
               
               
               Cow position:chr2:24145322-24145984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:677
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 65

               
               
               Conread position:41-722
               
               
               Cow position:chr2:976223-975565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:689
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):460, 58

               
               
               Conread position:41-798
               
               
               Cow position:chr2:19009276-19010030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:760
               
               
               Alignm identity:546
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):536, 217

               
               
               Conread position:52-796
               
               
               Cow position:chr2:42334215-42333495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:758
               
               
               Alignm identity:524
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 52

               
               
               Conread position:55-759
               
               
               Cow position:chr2:85356710-85356019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:518
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 64

               
               
               Conread position:56-751
               
               
               Cow position:chr2:4235247-4235908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:700
               
               
               Alignm identity:467
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 57

               
               
               Conread position:60-801
               
               
               Cow position:chr2:77207740-77208442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 45

               
               
               Conread position:61-566
               
               
               Cow position:chr2:25889145-25888640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 23

               
               
               Conread position:63-641
               
               
               Cow position:chr2:38589249-38589797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:401
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):515, 187

               
               
               Conread position:65-640
               
               
               Cow position:chr2:47852050-47851490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:578
               
               
               Alignm identity:348
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):46, 131

               
               
               Conread position:67-475
               
               
               Cow position:chr2:40452592-40452999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:265
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):134, 23

               
               
               Conread position:67-713
               
               
               Cow position:chr2:43958703-43959322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:654
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 23

               
               
               Conread position:67-778
               
               
               Cow position:chr2:3748983-3749695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 95

               
               
               Conread position:67-801
               
               
               Cow position:chr2:15580919-15580187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:751
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 156

               
               
               Conread position:67-801
               
               
               Cow position:chr2:80516140-80516861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:762
               
               
               Alignm identity:532
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 49

               
               
               Conread position:69-235
               
               
               Cow position:chr2:7210500-7210666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):142, 153

               
               
               Conread position:69-467
               
               
               Cow position:chr2:51305826-51305440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 77

               
               
               Conread position:69-569
               
               
               Cow position:chr2:32388636-32389126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 82

               
               
               Conread position:69-799
               
               
               Cow position:chr2:11691271-11691976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:740
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 157

               
               
               Conread position:71-674
               
               
               Cow position:chr2:6877571-6878152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):257, 27

               
               
               Conread position:71-801
               
               
               Cow position:chr2:36990971-36991687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:735
               
               
               Alignm identity:477
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 25

               
               
               Conread position:72-372
               
               
               Cow position:chr2:2363224-2363526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):17, 185

               
               
               Conread position:72-798
               
               
               Cow position:chr2:44345793-44346513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:558
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 16

               
               
               Conread position:72-804
               
               
               Cow position:chr2:769313-768584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:750
               
               
               Alignm identity:523
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 159

               
               
               Conread position:75-797
               
               
               Cow position:chr2:42672307-42671590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:528
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):504, 57

               
               
               Conread position:76-664
               
               
               Cow position:chr2:20921697-20921127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 108

               
               
               Conread position:78-426
               
               
               Cow position:chr2:54736709-54737050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 28

               
               
               Conread position:78-702
               
               
               Cow position:chr2:52174219-52173624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):242, 21

               
               
               Conread position:78-743
               
               
               Cow position:chr2:80586187-80586850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:675
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 27

               
               
               Conread position:81-803
               
               
               Cow position:chr2:34475798-34475116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:446
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):30, 9

               
               
               Conread position:82-801
               
               
               Cow position:chr2:20904042-20903368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:726
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 22

               
               
               Conread position:83-674
               
               
               Cow position:chr2:52680522-52681096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):345, 18

               
               
               Conread position:85-330
               
               
               Cow position:chr2:28644303-28644052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):81, 167

               
               
               Conread position:85-720
               
               
               Cow position:chr2:54649712-54649102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:642
               
               
               Alignm identity:457
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 91

               
               
               Conread position:91-803
               
               
               Cow position:chr2:283601-282887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:526
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):486, 381

               
               
               Conread position:92-798
               
               
               Cow position:chr2:2185164-2184458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:709
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):259, 253

               
               
               Conread position:93-744
               
               
               Cow position:chr2:52655572-52656210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:655
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):422, 14

               
               
               Conread position:94-790
               
               
               Cow position:chr2:5871231-5870564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:702
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 68

               
               
               Conread position:96-801
               
               
               Cow position:chr2:82166714-82167410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:518
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):483, 221

               
               
               Conread position:97-797
               
               
               Cow position:chr2:10844238-10843553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:705
               
               
               Alignm identity:531
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 53

               
               
               Conread position:97-798
               
               
               Cow position:chr2:5481534-5480871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:702
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:99-798
               
               
               Cow position:chr2:53474041-53473363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:704
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 37

               
               
               Conread position:100-648
               
               
               Cow position:chr2:27611977-27611440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:348
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):35, 125

               
               
               Conread position:100-677
               
               
               Cow position:chr2:2532879-2532335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:581
               
               
               Alignm identity:354
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):29, 62

               
               
               Conread position:100-741
               
               
               Cow position:chr2:2079684-2080324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:660
               
               
               Alignm identity:410
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):43, 49

               
               
               Conread position:100-766
               
               
               Cow position:chr2:35352483-35353133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:675
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 50

               
               
               Conread position:100-796
               
               
               Cow position:chr2:75175459-75176140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:704
               
               
               Alignm identity:431
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):61, 71

               
               
               Conread position:101-357
               
               
               Cow position:chr2:15578550-15578298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):224, 39

               
               
               Conread position:101-610
               
               
               Cow position:chr2:43366819-43366322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:330
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):49, 7

               
               
               Conread position:101-729
               
               
               Cow position:chr2:20027895-20028520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:638
               
               
               Alignm identity:405
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 76

               
               
               Conread position:101-789
               
               
               Cow position:chr2:14560302-14560969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:695
               
               
               Alignm identity:477
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 95

               
               
               Conread position:102-515
               
               
               Cow position:chr2:66310014-66309610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:260
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):41, 30

               
               
               Conread position:102-743
               
               
               Cow position:chr2:46537031-46536405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:651
               
               
               Alignm identity:396
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):58, 41

               
               
               Conread position:102-801
               
               
               Cow position:chr2:1647273-1647965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:711
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):299, 25

               
               
               Conread position:108-568
               
               
               Cow position:chr2:67821006-67821452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:289
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):119, 127

               
               
               Conread position:108-800
               
               
               Cow position:chr2:28621729-28621028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 171

               
               
               Conread position:108-801
               
               
               Cow position:chr2:53374894-53375556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:703
               
               
               Alignm identity:431
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):91, 100

               
               
               Conread position:109-530
               
               
               Cow position:chr2:43363814-43364224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:277
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):11, 37

               
               
               Conread position:109-798
               
               
               Cow position:chr2:16077183-16076498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:696
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 38

               
               
               Conread position:110-798
               
               
               Cow position:chr2:5905737-5905065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):469, 364

               
               
               Conread position:113-465
               
               
               Cow position:chr2:75250887-75251221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):344, 43

               
               
               Conread position:116-801
               
               
               Cow position:chr2:22136782-22136125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:696
               
               
               Alignm identity:444
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):19, 63

               
               
               Conread position:116-801
               
               
               Cow position:chr2:50321415-50322083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:694
               
               
               Alignm identity:461
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 43

               
               
               Conread position:118-559
               
               
               Cow position:chr2:1491306-1490870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 217

               
               
               Conread position:118-798
               
               
               Cow position:chr2:52152733-52152065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:687
               
               
               Alignm identity:521
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 312

               
               
               Conread position:119-798
               
               
               Cow position:chr2:72922709-72922033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:681
               
               
               Alignm identity:521
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):460, 206

               
               
               Conread position:123-794
               
               
               Cow position:chr2:41171820-41172472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:674
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 136

               
               
               Conread position:128-801
               
               
               Cow position:chr2:72109386-72108744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:684
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 94

               
               
               Conread position:132-798
               
               
               Cow position:chr2:11969619-11968971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:669
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):446, 43

               
               
               Conread position:132-798
               
               
               Cow position:chr2:46945796-46946465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:677
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 213

               
               
               Conread position:135-300
               
               
               Cow position:chr2:44166208-44166044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):99, 85

               
               
               Conread position:139-797
               
               
               Cow position:chr2:50076744-50077394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:663
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 65

               
               
               Conread position:140-798
               
               
               Cow position:chr2:49471388-49472045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:661
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 22

               
               
               Conread position:152-798
               
               
               Cow position:chr2:422220-422865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:653
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):257, 325

               
               
               Conread position:152-801
               
               
               Cow position:chr2:6773009-6772371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:651
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):427, 127

               
               
               Conread position:168-613
               
               
               Cow position:chr2:38372017-38372444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:294
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):161, 92

               
               
               Conread position:172-726
               
               
               Cow position:chr2:67430246-67430770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):407, 46

               
               
               Conread position:181-577
               
               
               Cow position:chr2:3439571-3439961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:256
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):47, 38

               
               
               Conread position:202-800
               
               
               Cow position:chr2:24907891-24907301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:376
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):39, 14

               
               
               Conread position:221-801
               
               
               Cow position:chr2:13487924-13488488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:590
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 168

               
               
               Conread position:223-648
               
               
               Cow position:chr2:72682909-72682484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 191

               
               
               Conread position:250-798
               
               
               Cow position:chr2:10712180-10711638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 95

               
               
               Conread position:254-794
               
               
               Cow position:chr2:4405093-4404554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:542
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):323, 218

               
               
               Conread position:258-533
               
               
               Cow position:chr2:46465952-46465681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):11, 46

               
               
               Conread position:266-778
               
               
               Cow position:chr2:34565660-34565152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):309, 203

               
               
               Conread position:275-691
               
               
               Cow position:chr2:20876338-20875948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:280
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):270, 70

               
               
               Conread position:275-801
               
               
               Cow position:chr2:7901559-7902079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 42

               
               
               Conread position:275-801
               
               
               Cow position:chr2:20874876-20874379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:530
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 71

               
               
               Conread position:277-777
               
               
               Cow position:chr2:7210983-7211477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 61

               
               
               Conread position:278-797
               
               
               Cow position:chr2:26868555-26869065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 58

               
               
               Conread position:291-759
               
               
               Cow position:chr2:61130994-61130574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 34

               
               
               Conread position:294-801
               
               
               Cow position:chr2:45921947-45921461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):285, 39

               
               
               Conread position:295-774
               
               
               Cow position:chr2:10294429-10294912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):284, 16

               
               
               Conread position:296-780
               
               
               Cow position:chr2:24131109-24130626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:308
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):101, 63

               
               
               Conread position:298-616
               
               
               Cow position:chr2:50456513-50456210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):287, 45

               
               
               Conread position:300-689
               
               
               Cow position:chr2:46402957-46402578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:264
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):32, 119

               
               
               Conread position:305-623
               
               
               Cow position:chr2:324511-324198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):96, 33

               
               
               Conread position:305-798
               
               
               Cow position:chr2:5814104-5813587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 70

               
               
               Conread position:307-593
               
               
               Cow position:chr2:40245367-40245649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 65

               
               
               Conread position:307-801
               
               
               Cow position:chr2:50402581-50403062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 132

               
               
               Conread position:317-711
               
               
               Cow position:chr2:46740720-46740318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):81, 64

               
               
               Conread position:318-708
               
               
               Cow position:chr2:10730236-10729849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 51

               
               
               Conread position:318-777
               
               
               Cow position:chr2:36979699-36980152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):265, 69

               
               
               Conread position:318-797
               
               
               Cow position:chr2:28792565-28793049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 155

               
               
               Conread position:321-801
               
               
               Cow position:chr2:28643797-28643332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):258, 152

               
               
               Conread position:323-797
               
               
               Cow position:chr2:44106768-44106311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):231, 42

               
               
               Conread position:335-798
               
               
               Cow position:chr2:6755979-6755518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:297
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):176, 75

               
               
               Conread position:336-798
               
               
               Cow position:chr2:1490638-1490178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):18, 60

               
               
               Conread position:351-801
               
               
               Cow position:chr2:290479-290032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):229, 122

               
               
               Conread position:352-708
               
               
               Cow position:chr2:73191291-73191630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):298, 77

               
               
               Conread position:352-804
               
               
               Cow position:chr2:15578222-15577767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 124

               
               
               Conread position:367-624
               
               
               Cow position:chr2:34618104-34618357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):210, 42

               
               
               Conread position:389-801
               
               
               Cow position:chr2:39621677-39622087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 90

               
               
               Conread position:390-801
               
               
               Cow position:chr2:3837590-3837209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:411-801
               
               
               Cow position:chr2:36054223-36053851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 55

               
               
               Conread position:414-784
               
               
               Cow position:chr2:14821926-14822285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 14

               
               
               Conread position:419-741
               
               
               Cow position:chr2:11399336-11399018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):43, 56

               
               
               Conread position:422-801
               
               
               Cow position:chr2:74391694-74391304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 51

               
               
               Conread position:443-798
               
               
               Cow position:chr2:2363641-2363982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 31

               
               
               Conread position:465-797
               
               
               Cow position:chr2:24921864-24922198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 8

               
               
               Conread position:492-743
               
               
               Cow position:chr2:66309601-66309349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:191
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):93, 73

               
               
               Conread position:492-783
               
               
               Cow position:chr2:14518960-14518672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):38, 167

               
               
               Conread position:493-689
               
               
               Cow position:chr2:8118055-8118252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:495-804
               
               
               Cow position:chr2:36031241-36030930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 127

               
               
               Conread position:498-798
               
               
               Cow position:chr2:10612130-10611828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:504-801
               
               
               Cow position:chr2:1111737-1111448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):10, 42

               
               
               Conread position:509-673
               
               
               Cow position:chr2:29147902-29147736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:519-804
               
               
               Cow position:chr2:51305217-51304932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 209

               
               
               Conread position:522-801
               
               
               Cow position:chr2:59963708-59963428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:201
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):48, 52

               
               
               Conread position:523-775
               
               
               Cow position:chr2:52350326-52350577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:184
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):55, 153

               
               
               Conread position:530-800
               
               
               Cow position:chr2:5485713-5485452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 39

               
               
               Conread position:532-800
               
               
               Cow position:chr2:45968820-45968558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):47, 17

               
               
               Conread position:542-688
               
               
               Cow position:chr2:15062778-15062634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):37, 103

               
               
               Conread position:542-798
               
               
               Cow position:chr2:45213748-45213487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:546-784
               
               
               Cow position:chr2:46465586-46465348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):17, 93

               
               
               Conread position:551-714
               
               
               Cow position:chr2:6638687-6638851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:561-797
               
               
               Cow position:chr2:32389345-32389583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 179

               
               
               Conread position:566-798
               
               
               Cow position:chr2:47603889-47603665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):13, 105

               
               
               Conread position:578-794
               
               
               Cow position:chr2:67419721-67419505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:578-798
               
               
               Cow position:chr2:4926598-4926378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:578-798
               
               
               Cow position:chr2:5474094-5474314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:578-801
               
               
               Cow position:chr2:28616627-28616407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:580-670
               
               
               Cow position:chr2:1490663-1490573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:91
               
               
               Alignm identity:78
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:582-798
               
               
               Cow position:chr2:2088591-2088375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 135

               
               
               Conread position:604-801
               
               
               Cow position:chr2:63977520-63977712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:608-794
               
               
               Cow position:chr2:54737118-54737302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:155
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:629-798
               
               
               Cow position:chr2:85068930-85068761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:638-801
               
               
               Cow position:chr2:41146884-41147048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:638-801
               
               
               Cow position:chr2:72682472-72682311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:646-798
               
               
               Cow position:chr2:49590047-49590199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:130
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:660-801
               
               
               Cow position:chr2:41149652-41149790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:684-798
               
               
               Cow position:chr2:57588381-57588494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:97
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:2-393
               
               
               Cow position:chr20:11276754-11276388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:268
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):126, 88

               
               
               Conread position:2-575
               
               
               Cow position:chr20:10103023-10102470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:576
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 29

               
               
               Conread position:2-786
               
               
               Cow position:chr20:15064278-15065066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:794
               
               
               Alignm identity:563
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 478

               
               
               Conread position:2-797
               
               
               Cow position:chr20:18316058-18315295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:806
               
               
               Alignm identity:553
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):266, 51

               
               
               Conread position:2-797
               
               
               Cow position:chr20:25851468-25850678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:798
               
               
               Alignm identity:577
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):575, 104

               
               
               Conread position:2-797
               
               
               Cow position:chr20:28160296-28161083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:808
               
               
               Alignm identity:579
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 9

               
               
               Conread position:5-797
               
               
               Cow position:chr20:30683859-30684633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:796
               
               
               Alignm identity:554
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 199

               
               
               Conread position:5-798
               
               
               Cow position:chr20:7116950-7116157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:797
               
               
               Alignm identity:572
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 11

               
               
               Conread position:7-622
               
               
               Cow position:chr20:21393098-21393701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 29

               
               
               Conread position:11-780
               
               
               Cow position:chr20:13665647-13664921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:780
               
               
               Alignm identity:519
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 127

               
               
               Conread position:12-315
               
               
               Cow position:chr20:29947712-29948016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:206
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:12-797
               
               
               Cow position:chr20:13762439-13763217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:790
               
               
               Alignm identity:580
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):564, 14

               
               
               Conread position:12-798
               
               
               Cow position:chr20:23470131-23469353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:789
               
               
               Alignm identity:579
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):300, 14

               
               
               Conread position:19-801
               
               
               Cow position:chr20:2791812-2791026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:807
               
               
               Alignm identity:532
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 34

               
               
               Conread position:21-797
               
               
               Cow position:chr20:23798419-23799198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:783
               
               
               Alignm identity:569
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):556, 211

               
               
               Conread position:22-323
               
               
               Cow position:chr20:31123943-31124244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:206
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):189, 198

               
               
               Conread position:22-798
               
               
               Cow position:chr20:822295-823080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:795
               
               
               Alignm identity:585
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):298, 189

               
               
               Conread position:22-798
               
               
               Cow position:chr20:19437502-19438253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:558
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):555, 189

               
               
               Conread position:23-280
               
               
               Cow position:chr20:15291586-15291843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):178, 182

               
               
               Conread position:23-336
               
               
               Cow position:chr20:8004974-8004663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:23-495
               
               
               Cow position:chr20:8994275-8993811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:301
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:23-797
               
               
               Cow position:chr20:5534486-5535250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:777
               
               
               Alignm identity:571
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):556, 76

               
               
               Conread position:23-797
               
               
               Cow position:chr20:27868736-27869510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:560
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 151

               
               
               Conread position:26-801
               
               
               Cow position:chr20:37578996-37579741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:788
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 12

               
               
               Conread position:27-755
               
               
               Cow position:chr20:20755886-20755179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:749
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 28

               
               
               Conread position:30-297
               
               
               Cow position:chr20:13681529-13681279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:30-803
               
               
               Cow position:chr20:21913885-21914644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:777
               
               
               Alignm identity:562
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):504, 11

               
               
               Conread position:37-797
               
               
               Cow position:chr20:12439205-12438448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:763
               
               
               Alignm identity:555
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):542, 29

               
               
               Conread position:37-800
               
               
               Cow position:chr20:20905629-20904899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:772
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 15

               
               
               Conread position:38-271
               
               
               Cow position:chr20:35118805-35119033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:41-640
               
               
               Cow position:chr20:2676676-2677270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 65

               
               
               Conread position:43-590
               
               
               Cow position:chr20:29572627-29572088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 21

               
               
               Conread position:67-801
               
               
               Cow position:chr20:5483779-5484506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:741
               
               
               Alignm identity:556
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 34

               
               
               Conread position:67-801
               
               
               Cow position:chr20:22206118-22206852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:753
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 32

               
               
               Conread position:68-798
               
               
               Cow position:chr20:31379285-31378575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:737
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 59

               
               
               Conread position:87-797
               
               
               Cow position:chr20:15098267-15097564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:515
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 15

               
               
               Conread position:92-798
               
               
               Cow position:chr20:8313819-8313127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:709
               
               
               Alignm identity:531
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):493, 15

               
               
               Conread position:97-798
               
               
               Cow position:chr20:3252527-3251822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:521
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 337

               
               
               Conread position:99-504
               
               
               Cow position:chr20:13757875-13758274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:266
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):37, 217

               
               
               Conread position:108-660
               
               
               Cow position:chr20:8371264-8370738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:556
               
               
               Alignm identity:351
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):136, 68

               
               
               Conread position:110-553
               
               
               Cow position:chr20:10846450-10846010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):403, 66

               
               
               Conread position:111-798
               
               
               Cow position:chr20:5561089-5560402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:691
               
               
               Alignm identity:533
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 125

               
               
               Conread position:115-582
               
               
               Cow position:chr20:4800014-4799554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):462, 80

               
               
               Conread position:117-471
               
               
               Cow position:chr20:24516503-24516852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:227
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):229, 110

               
               
               Conread position:118-798
               
               
               Cow position:chr20:24614183-24614849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:684
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):459, 218

               
               
               Conread position:123-593
               
               
               Cow position:chr20:22718043-22717586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 93

               
               
               Conread position:124-794
               
               
               Cow position:chr20:3270362-3271013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:674
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):399, 126

               
               
               Conread position:127-505
               
               
               Cow position:chr20:28593393-28593765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 44

               
               
               Conread position:132-396
               
               
               Cow position:chr20:3032585-3032840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):159, 0

               
               
               Conread position:137-803
               
               
               Cow position:chr20:28565948-28565276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:676
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 68

               
               
               Conread position:168-595
               
               
               Cow position:chr20:7085885-7085470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:268
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):72, 83

               
               
               Conread position:200-801
               
               
               Cow position:chr20:9954254-9953674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 26

               
               
               Conread position:221-472
               
               
               Cow position:chr20:35119061-35119311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 0

               
               
               Conread position:222-797
               
               
               Cow position:chr20:35119311-35119882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 181

               
               
               Conread position:226-520
               
               
               Cow position:chr20:19192387-19192094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):246, 0

               
               
               Conread position:232-770
               
               
               Cow position:chr20:13782469-13782973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:540
               
               
               Alignm identity:350
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):167, 93

               
               
               Conread position:250-677
               
               
               Cow position:chr20:11679345-11678918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):327, 222

               
               
               Conread position:256-660
               
               
               Cow position:chr20:24516807-24517206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:267
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):23, 8

               
               
               Conread position:280-511
               
               
               Cow position:chr20:24390168-24390389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):58, 183

               
               
               Conread position:294-625
               
               
               Cow position:chr20:18328245-18327929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):212, 66

               
               
               Conread position:298-741
               
               
               Cow position:chr20:36786693-36786258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:288
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):103, 51

               
               
               Conread position:311-801
               
               
               Cow position:chr20:8835805-8835323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 76

               
               
               Conread position:319-797
               
               
               Cow position:chr20:8004392-8003913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 155

               
               
               Conread position:321-797
               
               
               Cow position:chr20:15291854-15292323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):258, 81

               
               
               Conread position:326-621
               
               
               Cow position:chr20:14012311-14012606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):65, 55

               
               
               Conread position:360-801
               
               
               Cow position:chr20:15947518-15947064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 113

               
               
               Conread position:361-799
               
               
               Cow position:chr20:28476194-28476604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:293
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):218, 25

               
               
               Conread position:374-804
               
               
               Cow position:chr20:25960992-25961422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 99

               
               
               Conread position:390-798
               
               
               Cow position:chr20:3032969-3033374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 38

               
               
               Conread position:395-797
               
               
               Cow position:chr20:13680146-13679745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 78

               
               
               Conread position:426-797
               
               
               Cow position:chr20:29948440-29948811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 48

               
               
               Conread position:446-801
               
               
               Cow position:chr20:3684524-3684172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 27

               
               
               Conread position:489-797
               
               
               Cow position:chr20:13434942-13434643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):15, 41

               
               
               Conread position:498-789
               
               
               Cow position:chr20:28463486-28463779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):16, 124

               
               
               Conread position:504-747
               
               
               Cow position:chr20:10841229-10840985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):28, 162

               
               
               Conread position:507-771
               
               
               Cow position:chr20:42809267-42809007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):122, 21

               
               
               Conread position:508-801
               
               
               Cow position:chr20:8993622-8993334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:211
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):31, 19

               
               
               Conread position:516-798
               
               
               Cow position:chr20:10857006-10856725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):13, 96

               
               
               Conread position:552-740
               
               
               Cow position:chr20:19367523-19367334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):33, 126

               
               
               Conread position:556-801
               
               
               Cow position:chr20:35104562-35104314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:184
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:591-803
               
               
               Cow position:chr20:10846011-10845805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:170
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:612-798
               
               
               Cow position:chr20:21393721-21393906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):25, 8

               
               
               Conread position:637-801
               
               
               Cow position:chr20:22717589-22717424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):71, 54

               
               
               Conread position:672-798
               
               
               Cow position:chr20:19495170-19495296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-755
               
               
               Cow position:chr21:993387-992640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:767
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 14

               
               
               Conread position:2-255
               
               
               Cow position:chr21:41952827-41953072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):191, 29

               
               
               Conread position:2-300
               
               
               Cow position:chr21:4590321-4590032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:2-662
               
               
               Cow position:chr21:2769810-2769165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:664
               
               
               Alignm identity:469
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):350, 28

               
               
               Conread position:2-797
               
               
               Cow position:chr21:2415881-2416650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:801
               
               
               Alignm identity:576
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 179

               
               
               Conread position:11-804
               
               
               Cow position:chr21:4183193-4183952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:797
               
               
               Alignm identity:565
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 73

               
               
               Conread position:12-797
               
               
               Cow position:chr21:48115755-48116533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:790
               
               
               Alignm identity:552
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 14

               
               
               Conread position:13-371
               
               
               Cow position:chr21:5016380-5016023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:240
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):10, 69

               
               
               Conread position:21-798
               
               
               Cow position:chr21:46915247-46916020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:780
               
               
               Alignm identity:570
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):442, 190

               
               
               Conread position:22-247
               
               
               Cow position:chr21:2454375-2454600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):219, 201

               
               
               Conread position:22-268
               
               
               Cow position:chr21:19609772-19610018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:22-384
               
               
               Cow position:chr21:23704700-23705049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:235
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):128, 14

               
               
               Conread position:22-451
               
               
               Cow position:chr21:28529886-28529459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):223, 0

               
               
               Conread position:22-499
               
               
               Cow position:chr21:17572586-17573053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 140

               
               
               Conread position:22-567
               
               
               Cow position:chr21:27708418-27708963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:386
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 198

               
               
               Conread position:22-602
               
               
               Cow position:chr21:26819357-26818785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):555, 223

               
               
               Conread position:22-789
               
               
               Cow position:chr21:37044578-37045333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:769
               
               
               Alignm identity:566
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):557, 133

               
               
               Conread position:22-798
               
               
               Cow position:chr21:2510313-2511083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:779
               
               
               Alignm identity:569
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 140

               
               
               Conread position:22-798
               
               
               Cow position:chr21:4090305-4091081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:780
               
               
               Alignm identity:572
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 408

               
               
               Conread position:22-798
               
               
               Cow position:chr21:11505244-11506028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:790
               
               
               Alignm identity:561
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 50

               
               
               Conread position:22-798
               
               
               Cow position:chr21:26638800-26638033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:586
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):557, 189

               
               
               Conread position:23-630
               
               
               Cow position:chr21:33251052-33251656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):554, 44

               
               
               Conread position:23-777
               
               
               Cow position:chr21:10849737-10850490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:756
               
               
               Alignm identity:552
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):554, 449

               
               
               Conread position:23-797
               
               
               Cow position:chr21:31559990-31559224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:780
               
               
               Alignm identity:580
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):322, 193

               
               
               Conread position:26-775
               
               
               Cow position:chr21:215967-216698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:763
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 15

               
               
               Conread position:26-783
               
               
               Cow position:chr21:25992948-25992199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:777
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):248, 26

               
               
               Conread position:28-798
               
               
               Cow position:chr21:39424731-39425495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:774
               
               
               Alignm identity:552
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 184

               
               
               Conread position:29-286
               
               
               Cow position:chr21:39580385-39580642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):186, 198

               
               
               Conread position:29-798
               
               
               Cow position:chr21:2476844-2476109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:772
               
               
               Alignm identity:547
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 131

               
               
               Conread position:30-783
               
               
               Cow position:chr21:2884071-2883331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:757
               
               
               Alignm identity:552
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 175

               
               
               Conread position:30-798
               
               
               Cow position:chr21:145585-146354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:773
               
               
               Alignm identity:571
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):443, 11

               
               
               Conread position:32-794
               
               
               Cow position:chr21:11453987-11453228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:765
               
               
               Alignm identity:558
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 195

               
               
               Conread position:38-533
               
               
               Cow position:chr21:1190714-1191214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):342, 440

               
               
               Conread position:38-797
               
               
               Cow position:chr21:10566351-10567100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:763
               
               
               Alignm identity:555
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 95

               
               
               Conread position:41-424
               
               
               Cow position:chr21:40272136-40271762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 137

               
               
               Conread position:47-749
               
               
               Cow position:chr21:21948134-21947425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:469
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 16

               
               
               Conread position:53-426
               
               
               Cow position:chr21:2501624-2501990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:254
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):89, 97

               
               
               Conread position:67-263
               
               
               Cow position:chr21:35089404-35089599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):27, 33

               
               
               Conread position:67-350
               
               
               Cow position:chr21:34055213-34054929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):9, 116

               
               
               Conread position:67-798
               
               
               Cow position:chr21:7267831-7267105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:536
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):351, 95

               
               
               Conread position:67-798
               
               
               Cow position:chr21:12056296-12055569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:549
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):512, 267

               
               
               Conread position:67-798
               
               
               Cow position:chr21:35596079-35596798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:736
               
               
               Alignm identity:545
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 188

               
               
               Conread position:67-801
               
               
               Cow position:chr21:23860483-23861213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:750
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 406

               
               
               Conread position:69-469
               
               
               Cow position:chr21:4083354-4083749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:259
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):31, 90

               
               
               Conread position:70-739
               
               
               Cow position:chr21:27256552-27255910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:679
               
               
               Alignm identity:418
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):12, 30

               
               
               Conread position:71-798
               
               
               Cow position:chr21:13124290-13123574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:736
               
               
               Alignm identity:548
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 5

               
               
               Conread position:72-745
               
               
               Cow position:chr21:3426190-3426864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:683
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 92

               
               
               Conread position:72-798
               
               
               Cow position:chr21:2530423-2529696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:734
               
               
               Alignm identity:529
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 182

               
               
               Conread position:75-798
               
               
               Cow position:chr21:1292465-1291759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:544
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 100

               
               
               Conread position:78-324
               
               
               Cow position:chr21:18692462-18692717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:78-701
               
               
               Cow position:chr21:33755003-33755636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:649
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 12

               
               
               Conread position:82-759
               
               
               Cow position:chr21:47947837-47948501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:680
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):266, 25

               
               
               Conread position:82-797
               
               
               Cow position:chr21:3778483-3779198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:520
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 20

               
               
               Conread position:84-797
               
               
               Cow position:chr21:30600195-30599494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:523
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):495, 48

               
               
               Conread position:86-797
               
               
               Cow position:chr21:34292739-34293447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:538
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 32

               
               
               Conread position:92-568
               
               
               Cow position:chr21:21516937-21517391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:311
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):248, 47

               
               
               Conread position:92-789
               
               
               Cow position:chr21:20745013-20744346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:702
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 82

               
               
               Conread position:94-626
               
               
               Cow position:chr21:2716938-2716422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 19

               
               
               Conread position:97-642
               
               
               Cow position:chr21:34259479-34258954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:401
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):367, 28

               
               
               Conread position:97-744
               
               
               Cow position:chr21:47939210-47939849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:652
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 303

               
               
               Conread position:97-798
               
               
               Cow position:chr21:4076578-4077269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:705
               
               
               Alignm identity:511
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 121

               
               
               Conread position:97-801
               
               
               Cow position:chr21:36714373-36715063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 48

               
               
               Conread position:99-607
               
               
               Cow position:chr21:3615027-3615534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 51

               
               
               Conread position:100-797
               
               
               Cow position:chr21:3949844-3950506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:703
               
               
               Alignm identity:438
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):29, 39

               
               
               Conread position:105-511
               
               
               Cow position:chr21:444881-445268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:268
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):45, 36

               
               
               Conread position:108-741
               
               
               Cow position:chr21:36824423-36825069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:659
               
               
               Alignm identity:408
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):45, 29

               
               
               Conread position:109-676
               
               
               Cow position:chr21:21031484-21032037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):288, 23

               
               
               Conread position:110-270
               
               
               Cow position:chr21:23811657-23811814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:118-726
               
               
               Cow position:chr21:4222943-4222333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:458
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 77

               
               
               Conread position:118-801
               
               
               Cow position:chr21:358773-359468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:705
               
               
               Alignm identity:523
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 70

               
               
               Conread position:123-801
               
               
               Cow position:chr21:6699804-6699148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:688
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 130

               
               
               Conread position:123-801
               
               
               Cow position:chr21:9891370-9892033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:691
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):456, 77

               
               
               Conread position:127-803
               
               
               Cow position:chr21:2674876-2674176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:709
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 293

               
               
               Conread position:149-797
               
               
               Cow position:chr21:2789198-2788562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:651
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):427, 106

               
               
               Conread position:152-797
               
               
               Cow position:chr21:30561588-30562234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:648
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):427, 321

               
               
               Conread position:223-785
               
               
               Cow position:chr21:2541557-2540994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:568
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 21

               
               
               Conread position:232-801
               
               
               Cow position:chr21:30165610-30165051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 47

               
               
               Conread position:234-738
               
               
               Cow position:chr21:13281769-13282265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:324
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):124, 152

               
               
               Conread position:236-471
               
               
               Cow position:chr21:27623-27848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):22, 82

               
               
               Conread position:241-741
               
               
               Cow position:chr21:30925598-30925102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:320
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):169, 13

               
               
               Conread position:266-798
               
               
               Cow position:chr21:4456730-4457258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 18

               
               
               Conread position:296-797
               
               
               Cow position:chr21:26823297-26822803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 40

               
               
               Conread position:322-791
               
               
               Cow position:chr21:23811832-23812300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):259, 151

               
               
               Conread position:322-800
               
               
               Cow position:chr21:21914241-21914718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):256, 157

               
               
               Conread position:323-801
               
               
               Cow position:chr21:23601157-23601622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:309
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):255, 17

               
               
               Conread position:327-789
               
               
               Cow position:chr21:4590029-4589568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 101

               
               
               Conread position:335-666
               
               
               Cow position:chr21:28494965-28495293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):35, 74

               
               
               Conread position:336-801
               
               
               Cow position:chr21:4196650-4196186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:293
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):73, 10

               
               
               Conread position:336-801
               
               
               Cow position:chr21:45923005-45922541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:287
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):32, 10

               
               
               Conread position:339-729
               
               
               Cow position:chr21:32516860-32517257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:258
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):12, 77

               
               
               Conread position:351-797
               
               
               Cow position:chr21:27282372-27282817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 122

               
               
               Conread position:362-713
               
               
               Cow position:chr21:8678364-8678013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 111

               
               
               Conread position:362-798
               
               
               Cow position:chr21:6339562-6339998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 112

               
               
               Conread position:374-697
               
               
               Cow position:chr21:37147526-37147840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):156, 80

               
               
               Conread position:395-801
               
               
               Cow position:chr21:3194425-3194814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:269
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):135, 31

               
               
               Conread position:403-753
               
               
               Cow position:chr21:21926663-21926324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:237
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):64, 8

               
               
               Conread position:415-779
               
               
               Cow position:chr21:40271628-40271264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 58

               
               
               Conread position:416-794
               
               
               Cow position:chr21:10762456-10762813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:250
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):114, 67

               
               
               Conread position:423-729
               
               
               Cow position:chr21:34054684-34054373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):134, 46

               
               
               Conread position:443-671
               
               
               Cow position:chr21:18692799-18693017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):136, 35

               
               
               Conread position:455-797
               
               
               Cow position:chr21:1191251-1191595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 48

               
               
               Conread position:466-798
               
               
               Cow position:chr21:3798271-3797939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 9

               
               
               Conread position:472-778
               
               
               Cow position:chr21:21259055-21259352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):68, 56

               
               
               Conread position:472-798
               
               
               Cow position:chr21:18820311-18819998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 20

               
               
               Conread position:481-777
               
               
               Cow position:chr21:19650918-19651210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):18, 9

               
               
               Conread position:486-801
               
               
               Cow position:chr21:4086918-4087237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:230
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):13, 36

               
               
               Conread position:492-803
               
               
               Cow position:chr21:2502019-2502326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:230
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):88, 31

               
               
               Conread position:529-798
               
               
               Cow position:chr21:445259-445514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):49, 18

               
               
               Conread position:544-798
               
               
               Cow position:chr21:26650218-26650473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:578-797
               
               
               Cow position:chr21:35143980-35144188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):216, 99

               
               
               Conread position:580-797
               
               
               Cow position:chr21:3615536-3615742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:599-738
               
               
               Cow position:chr21:37292622-37292759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:604-804
               
               
               Cow position:chr21:30226257-30226457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:165
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:625-783
               
               
               Cow position:chr21:33251765-33251923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):65, 73

               
               
               Conread position:628-797
               
               
               Cow position:chr21:34258728-34258557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:141
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:642-801
               
               
               Cow position:chr21:9870022-9870181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:659-798
               
               
               Cow position:chr21:2716425-2716286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-270
               
               
               Cow position:chr22:36180603-36180876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):11, 17

               
               
               Conread position:2-310
               
               
               Cow position:chr22:12732592-12732301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):125, 70

               
               
               Conread position:2-435
               
               
               Cow position:chr22:46585844-46585416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:2-438
               
               
               Cow position:chr22:13772258-13772678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 200

               
               
               Conread position:2-512
               
               
               Cow position:chr22:37073681-37073218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:326
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:2-568
               
               
               Cow position:chr22:1285465-1284904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 88

               
               
               Conread position:2-615
               
               
               Cow position:chr22:45880641-45880036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:647
               
               
               Alignm identity:441
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):340, 88

               
               
               Conread position:2-640
               
               
               Cow position:chr22:1294025-1293395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:645
               
               
               Alignm identity:462
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 19

               
               
               Conread position:2-794
               
               
               Cow position:chr22:36736256-36737014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:795
               
               
               Alignm identity:587
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):575, 88

               
               
               Conread position:2-797
               
               
               Cow position:chr22:34167796-34168590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:798
               
               
               Alignm identity:580
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):566, 39

               
               
               Conread position:2-798
               
               
               Cow position:chr22:5933525-5932741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:812
               
               
               Alignm identity:569
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 42

               
               
               Conread position:2-801
               
               
               Cow position:chr22:3307247-3306474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:813
               
               
               Alignm identity:580
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):580, 118

               
               
               Conread position:2-801
               
               
               Cow position:chr22:6504184-6503415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:806
               
               
               Alignm identity:590
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):370, 88

               
               
               Conread position:2-801
               
               
               Cow position:chr22:15850808-15851583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:805
               
               
               Alignm identity:570
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 170

               
               
               Conread position:2-801
               
               
               Cow position:chr22:15957213-15956443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:806
               
               
               Alignm identity:528
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 64

               
               
               Conread position:4-801
               
               
               Cow position:chr22:1271031-1270273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:807
               
               
               Alignm identity:571
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):197, 81

               
               
               Conread position:18-801
               
               
               Cow position:chr22:11030469-11031222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:787
               
               
               Alignm identity:574
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 31

               
               
               Conread position:22-469
               
               
               Cow position:chr22:18476277-18475836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 84

               
               
               Conread position:22-575
               
               
               Cow position:chr22:6984738-6985290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 205

               
               
               Conread position:22-649
               
               
               Cow position:chr22:37264937-37265565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:634
               
               
               Alignm identity:448
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 74

               
               
               Conread position:22-714
               
               
               Cow position:chr22:24949313-24950005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:695
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 225

               
               
               Conread position:22-797
               
               
               Cow position:chr22:10910371-10909574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:806
               
               
               Alignm identity:574
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 274

               
               
               Conread position:22-798
               
               
               Cow position:chr22:327664-326911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:560
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):555, 46

               
               
               Conread position:22-798
               
               
               Cow position:chr22:693125-693882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:780
               
               
               Alignm identity:565
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 69

               
               
               Conread position:22-798
               
               
               Cow position:chr22:10546134-10546904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:780
               
               
               Alignm identity:575
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 205

               
               
               Conread position:22-798
               
               
               Cow position:chr22:27310293-27309514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:781
               
               
               Alignm identity:564
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):310, 454

               
               
               Conread position:22-798
               
               
               Cow position:chr22:35672872-35672097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:780
               
               
               Alignm identity:572
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):197, 214

               
               
               Conread position:22-798
               
               
               Cow position:chr22:44370130-44369367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:791
               
               
               Alignm identity:559
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 183

               
               
               Conread position:23-793
               
               
               Cow position:chr22:21588823-21589578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:774
               
               
               Alignm identity:569
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):199, 76

               
               
               Conread position:23-797
               
               
               Cow position:chr22:19144213-19143440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:777
               
               
               Alignm identity:565
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):556, 261

               
               
               Conread position:23-797
               
               
               Cow position:chr22:31312829-31313598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:777
               
               
               Alignm identity:563
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):556, 302

               
               
               Conread position:23-797
               
               
               Cow position:chr22:39470032-39469264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:777
               
               
               Alignm identity:575
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):557, 112

               
               
               Conread position:23-797
               
               
               Cow position:chr22:44933464-44934238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:566
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 182

               
               
               Conread position:28-798
               
               
               Cow position:chr22:16199984-16200733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:774
               
               
               Alignm identity:557
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 199

               
               
               Conread position:29-790
               
               
               Cow position:chr22:5233806-5233054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:764
               
               
               Alignm identity:563
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):199, 182

               
               
               Conread position:29-798
               
               
               Cow position:chr22:3278859-3278097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:772
               
               
               Alignm identity:560
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):199, 182

               
               
               Conread position:30-797
               
               
               Cow position:chr22:42990668-42991431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:770
               
               
               Alignm identity:566
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):549, 11

               
               
               Conread position:30-803
               
               
               Cow position:chr22:5307608-5308368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:779
               
               
               Alignm identity:564
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 348

               
               
               Conread position:32-798
               
               
               Cow position:chr22:44489380-44490146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:772
               
               
               Alignm identity:555
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 270

               
               
               Conread position:38-797
               
               
               Cow position:chr22:561199-560446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:763
               
               
               Alignm identity:560
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):535, 107

               
               
               Conread position:38-804
               
               
               Cow position:chr22:17329237-17328474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:769
               
               
               Alignm identity:559
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):539, 102

               
               
               Conread position:39-767
               
               
               Cow position:chr22:8895266-8895974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:735
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 42

               
               
               Conread position:41-329
               
               
               Cow position:chr22:526407-526119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):53, 210

               
               
               Conread position:41-426
               
               
               Cow position:chr22:44456814-44457203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 104

               
               
               Conread position:41-562
               
               
               Cow position:chr22:302486-301967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:534
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 13

               
               
               Conread position:44-794
               
               
               Cow position:chr22:37131151-37131888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:760
               
               
               Alignm identity:562
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 27

               
               
               Conread position:54-370
               
               
               Cow position:chr22:42771061-42771381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:216
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):44, 11

               
               
               Conread position:54-502
               
               
               Cow position:chr22:309240-309676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):336, 30

               
               
               Conread position:55-794
               
               
               Cow position:chr22:44609136-44609847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:515
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 63

               
               
               Conread position:57-797
               
               
               Cow position:chr22:31335512-31334779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:743
               
               
               Alignm identity:547
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):522, 42

               
               
               Conread position:58-758
               
               
               Cow position:chr22:46636171-46635495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:703
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 18

               
               
               Conread position:68-493
               
               
               Cow position:chr22:35943863-35943446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:271
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):41, 36

               
               
               Conread position:68-801
               
               
               Cow position:chr22:293623-292908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):323, 109

               
               
               Conread position:69-781
               
               
               Cow position:chr22:33350698-33351423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:737
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 68

               
               
               Conread position:72-498
               
               
               Cow position:chr22:118281-117857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 46

               
               
               Conread position:72-798
               
               
               Cow position:chr22:46852873-46853601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:533
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 246

               
               
               Conread position:78-466
               
               
               Cow position:chr22:44395322-44395708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:79-801
               
               
               Cow position:chr22:32348422-32347728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 36

               
               
               Conread position:81-801
               
               
               Cow position:chr22:871290-870604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):498, 65

               
               
               Conread position:81-801
               
               
               Cow position:chr22:1321163-1321849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:534
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 123

               
               
               Conread position:82-804
               
               
               Cow position:chr22:7277060-7277783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:528
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 435

               
               
               Conread position:82-804
               
               
               Cow position:chr22:8136661-8135936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:743
               
               
               Alignm identity:541
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 19

               
               
               Conread position:92-781
               
               
               Cow position:chr22:44353394-44352722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:692
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 114

               
               
               Conread position:93-801
               
               
               Cow position:chr22:41420130-41419432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:516
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 231

               
               
               Conread position:97-798
               
               
               Cow position:chr22:5672298-5672996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:704
               
               
               Alignm identity:532
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 11

               
               
               Conread position:98-794
               
               
               Cow position:chr22:1318954-1319652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:700
               
               
               Alignm identity:541
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 379

               
               
               Conread position:99-738
               
               
               Cow position:chr22:20207623-20206987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:649
               
               
               Alignm identity:395
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):120, 217

               
               
               Conread position:101-502
               
               
               Cow position:chr22:9657886-9658284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:273
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):21, 46

               
               
               Conread position:101-785
               
               
               Cow position:chr22:33480845-33480192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:694
               
               
               Alignm identity:420
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):49, 21

               
               
               Conread position:105-801
               
               
               Cow position:chr22:34657170-34656481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:706
               
               
               Alignm identity:416
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):50, 128

               
               
               Conread position:110-485
               
               
               Cow position:chr22:41474753-41474389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):106, 22

               
               
               Conread position:118-376
               
               
               Cow position:chr22:36534385-36534126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:119-801
               
               
               Cow position:chr22:39882592-39881914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:522
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):422, 179

               
               
               Conread position:122-422
               
               
               Cow position:chr22:37067325-37067031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:210
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):120, 54

               
               
               Conread position:123-797
               
               
               Cow position:chr22:36861946-36861271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:677
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):456, 350

               
               
               Conread position:125-508
               
               
               Cow position:chr22:10077160-10076787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 35

               
               
               Conread position:127-797
               
               
               Cow position:chr22:18816793-18816127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:674
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 152

               
               
               Conread position:149-753
               
               
               Cow position:chr22:32485717-32485139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:453
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):428, 66

               
               
               Conread position:149-798
               
               
               Cow position:chr22:158304-157647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:664
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 336

               
               
               Conread position:167-447
               
               
               Cow position:chr22:4065269-4065549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:203
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):48, 69

               
               
               Conread position:170-798
               
               
               Cow position:chr22:1878425-1879052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:476
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 72

               
               
               Conread position:194-726
               
               
               Cow position:chr22:36267032-36267551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:540
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 57

               
               
               Conread position:215-791
               
               
               Cow position:chr22:34598355-34598912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 12

               
               
               Conread position:229-660
               
               
               Cow position:chr22:8650977-8650564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:281
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):20, 106

               
               
               Conread position:264-784
               
               
               Cow position:chr22:36183484-36184001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 32

               
               
               Conread position:266-532
               
               
               Cow position:chr22:8149807-8149543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):233, 188

               
               
               Conread position:266-782
               
               
               Cow position:chr22:11782804-11782288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:529
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):249, 64

               
               
               Conread position:275-798
               
               
               Cow position:chr22:27283785-27284290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):302, 161

               
               
               Conread position:278-678
               
               
               Cow position:chr22:27386692-27386292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):290, 192

               
               
               Conread position:293-765
               
               
               Cow position:chr22:13675403-13674948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:312
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):137, 45

               
               
               Conread position:305-798
               
               
               Cow position:chr22:536867-537360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 168

               
               
               Conread position:308-735
               
               
               Cow position:chr22:36274575-36275005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 133

               
               
               Conread position:310-801
               
               
               Cow position:chr22:13917278-13917765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 19

               
               
               Conread position:318-587
               
               
               Cow position:chr22:17895357-17895617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):148, 17

               
               
               Conread position:318-637
               
               
               Cow position:chr22:12732065-12731753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):256, 137

               
               
               Conread position:318-797
               
               
               Cow position:chr22:15314169-15313693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):261, 110

               
               
               Conread position:321-801
               
               
               Cow position:chr22:298552-298080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 111

               
               
               Conread position:332-798
               
               
               Cow position:chr22:525881-525434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):247, 21

               
               
               Conread position:342-799
               
               
               Cow position:chr22:34606864-34607317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:312
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):13, 72

               
               
               Conread position:369-798
               
               
               Cow position:chr22:36533907-36533482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 59

               
               
               Conread position:369-798
               
               
               Cow position:chr22:46547834-46547405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 104

               
               
               Conread position:387-798
               
               
               Cow position:chr22:6020510-6020921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 86

               
               
               Conread position:387-798
               
               
               Cow position:chr22:20240993-20240583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 86

               
               
               Conread position:392-801
               
               
               Cow position:chr22:44475108-44475496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 82

               
               
               Conread position:417-801
               
               
               Cow position:chr22:1048289-1048663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:426-801
               
               
               Cow position:chr22:8874881-8875248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 48

               
               
               Conread position:429-798
               
               
               Cow position:chr22:42771365-42771714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:433-798
               
               
               Cow position:chr22:46581686-46581329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 40

               
               
               Conread position:440-700
               
               
               Cow position:chr22:45975878-45976130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):90, 34

               
               
               Conread position:443-618
               
               
               Cow position:chr22:13772882-13773053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:472-770
               
               
               Cow position:chr22:44396383-44396681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 180

               
               
               Conread position:479-799
               
               
               Cow position:chr22:309717-310037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 249

               
               
               Conread position:483-801
               
               
               Cow position:chr22:9273382-9273695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:222
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):96, 31

               
               
               Conread position:498-801
               
               
               Cow position:chr22:35943250-35942948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 54

               
               
               Conread position:498-801
               
               
               Cow position:chr22:41238133-41238433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 30

               
               
               Conread position:505-661
               
               
               Cow position:chr22:1860846-1860689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:505-803
               
               
               Cow position:chr22:36581209-36580921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):74, 23

               
               
               Conread position:532-724
               
               
               Cow position:chr22:37073221-37073028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:153
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):28, 84

               
               
               Conread position:542-798
               
               
               Cow position:chr22:117840-117583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:549-801
               
               
               Cow position:chr22:21365399-21365134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):30, 96

               
               
               Conread position:578-798
               
               
               Cow position:chr22:18027319-18027538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:579-710
               
               
               Cow position:chr22:31936660-31936529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:581-759
               
               
               Cow position:chr22:8740855-8740687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:581-801
               
               
               Cow position:chr22:1283608-1283397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 0

               
               
               Conread position:591-799
               
               
               Cow position:chr22:23853383-23853590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:163
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):16, 59

               
               
               Conread position:592-797
               
               
               Cow position:chr22:36592460-36592256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):114, 123

               
               
               Conread position:595-798
               
               
               Cow position:chr22:38938027-38937824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:165
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:599-745
               
               
               Cow position:chr22:48004325-48004462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:605-769
               
               
               Cow position:chr22:45879544-45879379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:140
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:638-798
               
               
               Cow position:chr22:37266072-37266232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:643-798
               
               
               Cow position:chr22:16813990-16814145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:647-798
               
               
               Cow position:chr22:1860847-1860998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:662-797
               
               
               Cow position:chr22:5941942-5941807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:689-797
               
               
               Cow position:chr22:13773045-13773153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:94
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):11, 64

               
               
               Conread position:704-798
               
               
               Cow position:chr22:24950261-24950355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:82
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-425
               
               
               Cow position:chr23:31595695-31595291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:2-423
               
               
               Cow position:chr23:1141036-1141437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:285
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):214, 34

               
               
               Conread position:2-455
               
               
               Cow position:chr23:2715814-2716263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 401

               
               
               Conread position:2-740
               
               
               Cow position:chr23:1025578-1024863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:543
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):199, 22

               
               
               Conread position:2-797
               
               
               Cow position:chr23:4509573-4510336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:803
               
               
               Alignm identity:551
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 53

               
               
               Conread position:2-797
               
               
               Cow position:chr23:19489007-19489801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:803
               
               
               Alignm identity:587
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 18

               
               
               Conread position:2-798
               
               
               Cow position:chr23:15176533-15177330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:811
               
               
               Alignm identity:575
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 34

               
               
               Conread position:2-798
               
               
               Cow position:chr23:22147801-22146995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:813
               
               
               Alignm identity:586
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 17

               
               
               Conread position:5-798
               
               
               Cow position:chr23:15220426-15219632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:806
               
               
               Alignm identity:570
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 199

               
               
               Conread position:12-798
               
               
               Cow position:chr23:16617368-16616587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:800
               
               
               Alignm identity:582
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 30

               
               
               Conread position:13-797
               
               
               Cow position:chr23:4433951-4434715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:789
               
               
               Alignm identity:559
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 30

               
               
               Conread position:17-276
               
               
               Cow position:chr23:2756978-2757239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):46, 9

               
               
               Conread position:22-329
               
               
               Cow position:chr23:14975278-14974978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):189, 0

               
               
               Conread position:22-714
               
               
               Cow position:chr23:4815563-4816250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:697
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):536, 19

               
               
               Conread position:22-798
               
               
               Cow position:chr23:4359321-4360089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:779
               
               
               Alignm identity:583
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 110

               
               
               Conread position:22-798
               
               
               Cow position:chr23:19951101-19950324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:782
               
               
               Alignm identity:564
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 79

               
               
               Conread position:22-798
               
               
               Cow position:chr23:20301695-20302471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:784
               
               
               Alignm identity:571
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 84

               
               
               Conread position:23-793
               
               
               Cow position:chr23:27398991-27399757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:774
               
               
               Alignm identity:567
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 83

               
               
               Conread position:23-797
               
               
               Cow position:chr23:11777971-11778747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:797
               
               
               Alignm identity:529
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 220

               
               
               Conread position:23-797
               
               
               Cow position:chr23:28912898-28913652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:777
               
               
               Alignm identity:557
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 90

               
               
               Conread position:23-798
               
               
               Cow position:chr23:28216776-28217549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:779
               
               
               Alignm identity:570
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 210

               
               
               Conread position:23-800
               
               
               Cow position:chr23:36031885-36031111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:782
               
               
               Alignm identity:577
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):199, 183

               
               
               Conread position:26-764
               
               
               Cow position:chr23:34174676-34175402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 26

               
               
               Conread position:27-676
               
               
               Cow position:chr23:2339895-2340532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:657
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 25

               
               
               Conread position:38-797
               
               
               Cow position:chr23:4641120-4640365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:763
               
               
               Alignm identity:562
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 45

               
               
               Conread position:41-797
               
               
               Cow position:chr23:2027620-2026860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:769
               
               
               Alignm identity:563
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 65

               
               
               Conread position:41-797
               
               
               Cow position:chr23:3882191-3881446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:759
               
               
               Alignm identity:554
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 12

               
               
               Conread position:56-471
               
               
               Cow position:chr23:19449540-19449955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:262
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):46, 35

               
               
               Conread position:67-542
               
               
               Cow position:chr23:22876099-22875632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 90

               
               
               Conread position:68-797
               
               
               Cow position:chr23:2796032-2795309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:535
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):509, 334

               
               
               Conread position:68-801
               
               
               Cow position:chr23:19332866-19332147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:740
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 14

               
               
               Conread position:72-797
               
               
               Cow position:chr23:989106-988389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:541
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 47

               
               
               Conread position:82-784
               
               
               Cow position:chr23:15525156-15525855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:706
               
               
               Alignm identity:524
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 20

               
               
               Conread position:87-797
               
               
               Cow position:chr23:967795-967091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:511
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 12

               
               
               Conread position:92-801
               
               
               Cow position:chr23:4276512-4277217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:529
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):487, 223

               
               
               Conread position:93-798
               
               
               Cow position:chr23:31446369-31447074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:709
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 143

               
               
               Conread position:97-327
               
               
               Cow position:chr23:14966413-14966184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):23, 17

               
               
               Conread position:97-747
               
               
               Cow position:chr23:3013190-3013854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:669
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 198

               
               
               Conread position:97-758
               
               
               Cow position:chr23:5875213-5874563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:664
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 231

               
               
               Conread position:97-797
               
               
               Cow position:chr23:5779527-5778829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:703
               
               
               Alignm identity:529
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 332

               
               
               Conread position:100-508
               
               
               Cow position:chr23:19017271-19017663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 115

               
               
               Conread position:102-756
               
               
               Cow position:chr23:22945497-22944856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:663
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 53

               
               
               Conread position:105-756
               
               
               Cow position:chr23:13508639-13509269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:652
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:113-462
               
               
               Cow position:chr23:1330711-1330368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):223, 0

               
               
               Conread position:118-472
               
               
               Cow position:chr23:2765788-2765448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:123-798
               
               
               Cow position:chr23:7273246-7273890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:680
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):315, 89

               
               
               Conread position:128-460
               
               
               Cow position:chr23:2574155-2574486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):244, 0

               
               
               Conread position:128-616
               
               
               Cow position:chr23:16481761-16481296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 95

               
               
               Conread position:133-655
               
               
               Cow position:chr23:20988564-20989072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:534
               
               
               Alignm identity:339
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):264, 52

               
               
               Conread position:134-797
               
               
               Cow position:chr23:30636706-30636042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:667
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):445, 339

               
               
               Conread position:161-318
               
               
               Cow position:chr23:6469652-6469495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:171-507
               
               
               Cow position:chr23:8980856-8980525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 0

               
               
               Conread position:181-426
               
               
               Cow position:chr23:2725505-2725744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:221-798
               
               
               Cow position:chr23:2313555-2312981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):356, 251

               
               
               Conread position:227-801
               
               
               Cow position:chr23:4751704-4752248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:396
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:235-432
               
               
               Cow position:chr23:16616168-16615975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:251-797
               
               
               Cow position:chr23:4888393-4888932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:549
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):326, 221

               
               
               Conread position:258-797
               
               
               Cow position:chr23:17184867-17185386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:553
               
               
               Alignm identity:366
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):15, 10

               
               
               Conread position:266-592
               
               
               Cow position:chr23:4650944-4651270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:267-534
               
               
               Cow position:chr23:7750121-7750387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):235, 161

               
               
               Conread position:268-797
               
               
               Cow position:chr23:2757310-2757853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:410
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 35

               
               
               Conread position:292-762
               
               
               Cow position:chr23:2524442-2523974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 48

               
               
               Conread position:310-782
               
               
               Cow position:chr23:20156459-20155972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 14

               
               
               Conread position:315-801
               
               
               Cow position:chr23:38578072-38578536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 12

               
               
               Conread position:318-797
               
               
               Cow position:chr23:14965967-14965493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):261, 155

               
               
               Conread position:318-798
               
               
               Cow position:chr23:14974782-14974305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 29

               
               
               Conread position:360-801
               
               
               Cow position:chr23:6216396-6216833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 111

               
               
               Conread position:363-798
               
               
               Cow position:chr23:31591983-31591543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 17

               
               
               Conread position:366-798
               
               
               Cow position:chr23:25684231-25683805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 29

               
               
               Conread position:408-732
               
               
               Cow position:chr23:3380408-3380084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):60, 18

               
               
               Conread position:416-791
               
               
               Cow position:chr23:29474676-29474311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 57

               
               
               Conread position:429-801
               
               
               Cow position:chr23:1327570-1327212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 44

               
               
               Conread position:432-801
               
               
               Cow position:chr23:10903426-10903799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 12

               
               
               Conread position:458-797
               
               
               Cow position:chr23:2716309-2716647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 15

               
               
               Conread position:460-797
               
               
               Cow position:chr23:36211207-36210862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:239
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):87, 18

               
               
               Conread position:472-801
               
               
               Cow position:chr23:2763829-2763514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):64, 78

               
               
               Conread position:487-779
               
               
               Cow position:chr23:31595290-31594996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:489-798
               
               
               Cow position:chr23:2574485-2574794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 39

               
               
               Conread position:492-666
               
               
               Cow position:chr23:31651602-31651433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):31, 77

               
               
               Conread position:496-763
               
               
               Cow position:chr23:19450213-19450475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):22, 33

               
               
               Conread position:506-801
               
               
               Cow position:chr23:26836249-26836535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):73, 22

               
               
               Conread position:532-801
               
               
               Cow position:chr23:8980318-8980059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 43

               
               
               Conread position:546-771
               
               
               Cow position:chr23:7352230-7352451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):34, 55

               
               
               Conread position:551-705
               
               
               Cow position:chr23:2020018-2020170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):31, 94

               
               
               Conread position:566-799
               
               
               Cow position:chr23:16615970-16615739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:181
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):13, 115

               
               
               Conread position:588-762
               
               
               Cow position:chr23:2782383-2782213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:588-798
               
               
               Cow position:chr23:29452270-29452059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:169
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 9

               
               
               Conread position:589-797
               
               
               Cow position:chr23:2765403-2765195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:589-799
               
               
               Cow position:chr23:33699185-33699391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:589-801
               
               
               Cow position:chr23:22875623-22875424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:169
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:605-801
               
               
               Cow position:chr23:3863013-3863208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:659-801
               
               
               Cow position:chr23:31650790-31650656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:1-490
               
               
               Cow position:chr24:13021231-13021704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 40

               
               
               Conread position:1-800
               
               
               Cow position:chr24:6335247-6336029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:806
               
               
               Alignm identity:579
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):317, 13

               
               
               Conread position:2-287
               
               
               Cow position:chr24:17314761-17314479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:2-371
               
               
               Cow position:chr24:37216280-37216651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):326, 88

               
               
               Conread position:2-553
               
               
               Cow position:chr24:12289163-12288630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:2-671
               
               
               Cow position:chr24:39678004-39678627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:672
               
               
               Alignm identity:452
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):381, 9

               
               
               Conread position:2-700
               
               
               Cow position:chr24:12131933-12131239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:706
               
               
               Alignm identity:446
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 16

               
               
               Conread position:2-771
               
               
               Cow position:chr24:15392748-15392022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:773
               
               
               Alignm identity:552
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 29

               
               
               Conread position:2-798
               
               
               Cow position:chr24:16649754-16648972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:810
               
               
               Alignm identity:580
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 19

               
               
               Conread position:2-798
               
               
               Cow position:chr24:33932911-33933711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:805
               
               
               Alignm identity:578
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 17

               
               
               Conread position:2-800
               
               
               Cow position:chr24:12236613-12237400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:800
               
               
               Alignm identity:559
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):577, 102

               
               
               Conread position:2-801
               
               
               Cow position:chr24:12798197-12797421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:802
               
               
               Alignm identity:577
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 67

               
               
               Conread position:12-673
               
               
               Cow position:chr24:14391158-14390511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:670
               
               
               Alignm identity:478
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 27

               
               
               Conread position:12-798
               
               
               Cow position:chr24:12114471-12113702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:793
               
               
               Alignm identity:552
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 41

               
               
               Conread position:15-670
               
               
               Cow position:chr24:12224894-12224245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:676
               
               
               Alignm identity:463
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 94

               
               
               Conread position:20-798
               
               
               Cow position:chr24:33739776-33738995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:789
               
               
               Alignm identity:556
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 262

               
               
               Conread position:22-306
               
               
               Cow position:chr24:7712722-7712445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):172, 0

               
               
               Conread position:22-371
               
               
               Cow position:chr24:20267787-20268136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 214

               
               
               Conread position:22-610
               
               
               Cow position:chr24:6644987-6645570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:590
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):555, 301

               
               
               Conread position:22-617
               
               
               Cow position:chr24:7060681-7061264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):555, 106

               
               
               Conread position:22-798
               
               
               Cow position:chr24:6025527-6024753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:780
               
               
               Alignm identity:561
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 197

               
               
               Conread position:22-798
               
               
               Cow position:chr24:6433807-6434585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:782
               
               
               Alignm identity:581
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 175

               
               
               Conread position:22-798
               
               
               Cow position:chr24:9189161-9188387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:779
               
               
               Alignm identity:565
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 213

               
               
               Conread position:22-798
               
               
               Cow position:chr24:16085104-16084314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:798
               
               
               Alignm identity:576
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 19

               
               
               Conread position:22-798
               
               
               Cow position:chr24:22792745-22793517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:781
               
               
               Alignm identity:574
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 84

               
               
               Conread position:23-313
               
               
               Cow position:chr24:29186375-29186666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:203
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:26-404
               
               
               Cow position:chr24:6057253-6057625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:251
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):40, 87

               
               
               Conread position:27-777
               
               
               Cow position:chr24:32330923-32331639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:755
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 42

               
               
               Conread position:30-765
               
               
               Cow position:chr24:44017123-44017858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:740
               
               
               Alignm identity:553
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 76

               
               
               Conread position:30-797
               
               
               Cow position:chr24:19832963-19833730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:774
               
               
               Alignm identity:571
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):549, 20

               
               
               Conread position:32-798
               
               
               Cow position:chr24:6083596-6084362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:769
               
               
               Alignm identity:572
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 187

               
               
               Conread position:36-355
               
               
               Cow position:chr24:5993387-5993075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:226
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):144, 178

               
               
               Conread position:38-282
               
               
               Cow position:chr24:149006-148763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):165, 0

               
               
               Conread position:38-797
               
               
               Cow position:chr24:4415940-4415184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:771
               
               
               Alignm identity:566
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 68

               
               
               Conread position:38-798
               
               
               Cow position:chr24:14385023-14384270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:763
               
               
               Alignm identity:548
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):542, 37

               
               
               Conread position:41-798
               
               
               Cow position:chr24:6144948-6145713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:770
               
               
               Alignm identity:555
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 98

               
               
               Conread position:56-797
               
               
               Cow position:chr24:12161488-12162199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:530
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 42

               
               
               Conread position:61-789
               
               
               Cow position:chr24:14873733-14873014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:736
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 67

               
               
               Conread position:61-801
               
               
               Cow position:chr24:36707469-36708195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:748
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 132

               
               
               Conread position:67-449
               
               
               Cow position:chr24:30117126-30117485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:249
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):62, 17

               
               
               Conread position:67-784
               
               
               Cow position:chr24:6351807-6352516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 374

               
               
               Conread position:68-506
               
               
               Cow position:chr24:17525057-17525494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:281
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):46, 82

               
               
               Conread position:68-514
               
               
               Cow position:chr24:13318851-13319288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:277
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):12, 184

               
               
               Conread position:68-668
               
               
               Cow position:chr24:38635362-38635969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 236

               
               
               Conread position:74-623
               
               
               Cow position:chr24:17187165-17187710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:553
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 342

               
               
               Conread position:74-798
               
               
               Cow position:chr24:12085825-12086543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:539
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 32

               
               
               Conread position:76-801
               
               
               Cow position:chr24:1447203-1447902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 21

               
               
               Conread position:78-625
               
               
               Cow position:chr24:36296793-36297340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:372
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):54, 147

               
               
               Conread position:78-801
               
               
               Cow position:chr24:35838999-35838272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:553
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 25

               
               
               Conread position:81-801
               
               
               Cow position:chr24:12567881-12568572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 22

               
               
               Conread position:81-801
               
               
               Cow position:chr24:35841974-35841275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 102

               
               
               Conread position:82-407
               
               
               Cow position:chr24:12207774-12208092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:225
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):148, 19

               
               
               Conread position:92-385
               
               
               Cow position:chr24:35991012-35990728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):123, 82

               
               
               Conread position:92-525
               
               
               Cow position:chr24:22855849-22856274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:266
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):192, 16

               
               
               Conread position:93-403
               
               
               Cow position:chr24:32125854-32125562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:209
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):227, 107

               
               
               Conread position:96-513
               
               
               Cow position:chr24:13181693-13181293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:100-567
               
               
               Cow position:chr24:1489986-1490441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:305
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):114, 8

               
               
               Conread position:100-765
               
               
               Cow position:chr24:14885598-14884942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:686
               
               
               Alignm identity:467
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 182

               
               
               Conread position:101-743
               
               
               Cow position:chr24:6417659-6417029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:661
               
               
               Alignm identity:404
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):27, 111

               
               
               Conread position:101-789
               
               
               Cow position:chr24:23098783-23098111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:704
               
               
               Alignm identity:455
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):264, 112

               
               
               Conread position:108-800
               
               
               Cow position:chr24:6537226-6537883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:697
               
               
               Alignm identity:474
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 36

               
               
               Conread position:110-798
               
               
               Cow position:chr24:13187852-13188518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:692
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):467, 101

               
               
               Conread position:115-783
               
               
               Cow position:chr24:37321934-37321283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:676
               
               
               Alignm identity:438
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 36

               
               
               Conread position:120-794
               
               
               Cow position:chr24:12485650-12484976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:677
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 103

               
               
               Conread position:125-801
               
               
               Cow position:chr24:36560398-36559739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:678
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):454, 7

               
               
               Conread position:131-612
               
               
               Cow position:chr24:2635797-2636276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 5

               
               
               Conread position:132-380
               
               
               Cow position:chr24:37301394-37301154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):156, 79

               
               
               Conread position:138-559
               
               
               Cow position:chr24:13531849-13531431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 187

               
               
               Conread position:169-573
               
               
               Cow position:chr24:5455838-5455432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:264
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):125, 75

               
               
               Conread position:191-798
               
               
               Cow position:chr24:8029889-8030496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:465
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 42

               
               
               Conread position:199-705
               
               
               Cow position:chr24:5890271-5889781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:315
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):214, 51

               
               
               Conread position:225-743
               
               
               Cow position:chr24:28042459-28041973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:329
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):17, 51

               
               
               Conread position:240-777
               
               
               Cow position:chr24:4464469-4463944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:549
               
               
               Alignm identity:348
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):29, 143

               
               
               Conread position:267-549
               
               
               Cow position:chr24:6511315-6511032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):197, 52

               
               
               Conread position:282-801
               
               
               Cow position:chr24:17303767-17303268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):267, 99

               
               
               Conread position:285-801
               
               
               Cow position:chr24:14584927-14585424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:401
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:296-557
               
               
               Cow position:chr24:584363-584102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):95, 161

               
               
               Conread position:296-797
               
               
               Cow position:chr24:6515200-6514708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 57

               
               
               Conread position:299-744
               
               
               Cow position:chr24:22951982-22952427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):280, 174

               
               
               Conread position:305-797
               
               
               Cow position:chr24:148763-148274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 95

               
               
               Conread position:307-790
               
               
               Cow position:chr24:9092419-9091948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):270, 164

               
               
               Conread position:318-797
               
               
               Cow position:chr24:12335927-12335430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 457

               
               
               Conread position:347-798
               
               
               Cow position:chr24:40548771-40549219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 127

               
               
               Conread position:347-801
               
               
               Cow position:chr24:40654283-40654732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 62

               
               
               Conread position:368-798
               
               
               Cow position:chr24:37216919-37217343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 105

               
               
               Conread position:369-575
               
               
               Cow position:chr24:35987428-35987236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:393-798
               
               
               Cow position:chr24:6660668-6660254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 80

               
               
               Conread position:441-796
               
               
               Cow position:chr24:26906908-26907263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):74, 25

               
               
               Conread position:444-790
               
               
               Cow position:chr24:17696976-17696641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 13

               
               
               Conread position:459-744
               
               
               Cow position:chr24:13524126-13524395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 14

               
               
               Conread position:491-800
               
               
               Cow position:chr24:7091558-7091248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 73

               
               
               Conread position:502-797
               
               
               Cow position:chr24:29187331-29187628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:510-754
               
               
               Cow position:chr24:12146078-12145830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):69, 33

               
               
               Conread position:519-782
               
               
               Cow position:chr24:1438118-1437859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:190
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):59, 28

               
               
               Conread position:519-804
               
               
               Cow position:chr24:12288329-12288040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):60, 26

               
               
               Conread position:578-798
               
               
               Cow position:chr24:6645827-6646045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 205

               
               
               Conread position:590-773
               
               
               Cow position:chr24:8152868-8152688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):52, 119

               
               
               Conread position:603-790
               
               
               Cow position:chr24:7061539-7061726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:159
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:611-798
               
               
               Cow position:chr24:5993071-5992884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:150
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:636-801
               
               
               Cow position:chr24:16376708-16376868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):81, 39

               
               
               Conread position:647-801
               
               
               Cow position:chr24:14333237-14333391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:672-798
               
               
               Cow position:chr24:43813983-43814109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:688-798
               
               
               Cow position:chr24:6444517-6444626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:693-798
               
               
               Cow position:chr24:12130733-12130629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:87
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:1-654
               
               
               Cow position:chr25:33991546-33990902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:660
               
               
               Alignm identity:458
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 49

               
               
               Conread position:2-625
               
               
               Cow position:chr25:17561086-17560477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:636
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):557, 94

               
               
               Conread position:2-801
               
               
               Cow position:chr25:18092531-18093314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:801
               
               
               Alignm identity:586
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):577, 52

               
               
               Conread position:5-779
               
               
               Cow position:chr25:25506159-25506931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:777
               
               
               Alignm identity:568
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):334, 344

               
               
               Conread position:6-798
               
               
               Cow position:chr25:18276320-18275527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:810
               
               
               Alignm identity:578
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 144

               
               
               Conread position:12-784
               
               
               Cow position:chr25:22147014-22147782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:774
               
               
               Alignm identity:565
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):567, 14

               
               
               Conread position:13-692
               
               
               Cow position:chr25:18224091-18223450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:686
               
               
               Alignm identity:415
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):139, 28

               
               
               Conread position:15-488
               
               
               Cow position:chr25:24171558-24172018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:306
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):110, 14

               
               
               Conread position:19-803
               
               
               Cow position:chr25:34347467-34346709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:788
               
               
               Alignm identity:538
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):560, 49

               
               
               Conread position:20-798
               
               
               Cow position:chr25:17590020-17589253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:784
               
               
               Alignm identity:579
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 192

               
               
               Conread position:22-798
               
               
               Cow position:chr25:19916615-19917385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:550
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):557, 189

               
               
               Conread position:22-798
               
               
               Cow position:chr25:20777372-20776601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:783
               
               
               Alignm identity:556
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 183

               
               
               Conread position:22-798
               
               
               Cow position:chr25:26921757-26922517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:781
               
               
               Alignm identity:550
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 225

               
               
               Conread position:22-798
               
               
               Cow position:chr25:32579511-32580266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:569
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):557, 69

               
               
               Conread position:22-798
               
               
               Cow position:chr25:35362893-35362128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:779
               
               
               Alignm identity:573
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 214

               
               
               Conread position:30-403
               
               
               Cow position:chr25:34014809-34014439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:30-462
               
               
               Cow position:chr25:17563367-17562955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:30-797
               
               
               Cow position:chr25:26278812-26279560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:772
               
               
               Alignm identity:564
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):549, 11

               
               
               Conread position:34-801
               
               
               Cow position:chr25:19288807-19288042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:792
               
               
               Alignm identity:527
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 27

               
               
               Conread position:37-520
               
               
               Cow position:chr25:18302314-18302813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 167

               
               
               Conread position:38-797
               
               
               Cow position:chr25:18890472-18889714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:762
               
               
               Alignm identity:566
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):674, 145

               
               
               Conread position:41-798
               
               
               Cow position:chr25:13780583-13781331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:759
               
               
               Alignm identity:556
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):538, 72

               
               
               Conread position:41-803
               
               
               Cow position:chr25:18255807-18255067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:769
               
               
               Alignm identity:526
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 12

               
               
               Conread position:44-798
               
               
               Cow position:chr25:8674477-8675217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:756
               
               
               Alignm identity:550
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):535, 39

               
               
               Conread position:56-617
               
               
               Cow position:chr25:26866783-26867362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:581
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 484

               
               
               Conread position:58-617
               
               
               Cow position:chr25:18172904-18173471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 79

               
               
               Conread position:58-798
               
               
               Cow position:chr25:14015740-14016466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:549
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):479, 60

               
               
               Conread position:67-270
               
               
               Cow position:chr25:32979188-32978984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):29, 161

               
               
               Conread position:67-801
               
               
               Cow position:chr25:11933950-11933227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:740
               
               
               Alignm identity:516
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 166

               
               
               Conread position:67-801
               
               
               Cow position:chr25:20493937-20494653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:750
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 31

               
               
               Conread position:69-397
               
               
               Cow position:chr25:23346114-23345805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):153, 21

               
               
               Conread position:92-461
               
               
               Cow position:chr25:21901676-21902031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):28, 144

               
               
               Conread position:92-503
               
               
               Cow position:chr25:18411685-18411283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):240, 151

               
               
               Conread position:97-798
               
               
               Cow position:chr25:17469092-17468401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:534
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 108

               
               
               Conread position:99-798
               
               
               Cow position:chr25:18060990-18060301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:511
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 82

               
               
               Conread position:101-610
               
               
               Cow position:chr25:28170397-28169901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:319
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):22, 43

               
               
               Conread position:101-645
               
               
               Cow position:chr25:14484035-14483499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:557
               
               
               Alignm identity:351
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):319, 43

               
               
               Conread position:108-661
               
               
               Cow position:chr25:4761383-4760834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:360
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):77, 14

               
               
               Conread position:108-796
               
               
               Cow position:chr25:16232559-16231871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:436
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):45, 28

               
               
               Conread position:114-765
               
               
               Cow position:chr25:20629195-20629834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:653
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):463, 358

               
               
               Conread position:115-757
               
               
               Cow position:chr25:33243494-33244080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:647
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 17

               
               
               Conread position:116-777
               
               
               Cow position:chr25:18421271-18421950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:455
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 5

               
               
               Conread position:118-750
               
               
               Cow position:chr25:18028006-18027372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:637
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):254, 126

               
               
               Conread position:118-797
               
               
               Cow position:chr25:11375724-11375048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:683
               
               
               Alignm identity:528
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):417, 222

               
               
               Conread position:123-801
               
               
               Cow position:chr25:12759970-12759296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:687
               
               
               Alignm identity:471
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 12

               
               
               Conread position:137-356
               
               
               Cow position:chr25:12943796-12943578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):209, 191

               
               
               Conread position:140-798
               
               
               Cow position:chr25:34656801-34656145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:660
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):437, 332

               
               
               Conread position:221-777
               
               
               Cow position:chr25:24218385-24217838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:562
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 29

               
               
               Conread position:221-799
               
               
               Cow position:chr25:36240278-36240850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):322, 29

               
               
               Conread position:235-610
               
               
               Cow position:chr25:610971-611333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:240
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):114, 67

               
               
               Conread position:268-801
               
               
               Cow position:chr25:28030848-28030314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:543
               
               
               Alignm identity:334
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):40, 172

               
               
               Conread position:311-702
               
               
               Cow position:chr25:39560463-39560093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:264
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):267, 16

               
               
               Conread position:349-797
               
               
               Cow position:chr25:12942847-12942399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 11

               
               
               Conread position:390-766
               
               
               Cow position:chr25:23345446-23345068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 22

               
               
               Conread position:391-800
               
               
               Cow position:chr25:33665974-33665570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 86

               
               
               Conread position:413-705
               
               
               Cow position:chr25:536877-536597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):167, 40

               
               
               Conread position:429-798
               
               
               Cow position:chr25:27022634-27022265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 44

               
               
               Conread position:465-798
               
               
               Cow position:chr25:18195130-18194797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 8

               
               
               Conread position:480-796
               
               
               Cow position:chr25:18645860-18645542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):93, 132

               
               
               Conread position:492-656
               
               
               Cow position:chr25:23388661-23388495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:500-744
               
               
               Cow position:chr25:3378751-3378511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):79, 28

               
               
               Conread position:517-798
               
               
               Cow position:chr25:18303418-18303701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 207

               
               
               Conread position:528-793
               
               
               Cow position:chr25:9544096-9544357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 12

               
               
               Conread position:544-797
               
               
               Cow position:chr25:34014443-34014187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:192
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):34, 141

               
               
               Conread position:653-798
               
               
               Cow position:chr25:6172059-6172204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:653-801
               
               
               Cow position:chr25:17560476-17560326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:687-798
               
               
               Cow position:chr25:24659444-24659555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:89
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-289
               
               
               Cow position:chr26:34012554-34012834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):198, 47

               
               
               Conread position:2-331
               
               
               Cow position:chr26:9846601-9846278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:227
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):240, 78

               
               
               Conread position:13-312
               
               
               Cow position:chr26:8918524-8918817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):10, 199

               
               
               Conread position:19-801
               
               
               Cow position:chr26:9563814-9563032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:787
               
               
               Alignm identity:576
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 185

               
               
               Conread position:20-798
               
               
               Cow position:chr26:3031265-3030507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:782
               
               
               Alignm identity:559
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 208

               
               
               Conread position:22-338
               
               
               Cow position:chr26:24201169-24201486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):307, 0

               
               
               Conread position:22-339
               
               
               Cow position:chr26:19998034-19998351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 214

               
               
               Conread position:22-466
               
               
               Cow position:chr26:9112013-9112457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:22-781
               
               
               Cow position:chr26:20262419-20263155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:779
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):302, 19

               
               
               Conread position:22-798
               
               
               Cow position:chr26:2198193-2198948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:565
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):555, 143

               
               
               Conread position:22-798
               
               
               Cow position:chr26:2352801-2352038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:568
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):555, 133

               
               
               Conread position:22-798
               
               
               Cow position:chr26:11254514-11253734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:785
               
               
               Alignm identity:573
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 70

               
               
               Conread position:22-798
               
               
               Cow position:chr26:12589013-12588243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:781
               
               
               Alignm identity:583
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 70

               
               
               Conread position:22-798
               
               
               Cow position:chr26:30782316-30783065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:540
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):551, 223

               
               
               Conread position:23-270
               
               
               Cow position:chr26:30590692-30590445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:23-790
               
               
               Cow position:chr26:17397388-17396617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:776
               
               
               Alignm identity:557
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 187

               
               
               Conread position:23-797
               
               
               Cow position:chr26:19351965-19351192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:777
               
               
               Alignm identity:577
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):554, 405

               
               
               Conread position:26-403
               
               
               Cow position:chr26:6516416-6516783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:249
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):22, 37

               
               
               Conread position:32-798
               
               
               Cow position:chr26:8869436-8870204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:775
               
               
               Alignm identity:557
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 67

               
               
               Conread position:49-548
               
               
               Cow position:chr26:3074108-3074594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:298
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):290, 156

               
               
               Conread position:55-499
               
               
               Cow position:chr26:23605328-23604878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 17

               
               
               Conread position:55-538
               
               
               Cow position:chr26:19535758-19536246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:315
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):46, 97

               
               
               Conread position:60-471
               
               
               Cow position:chr26:6489444-6489042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:263
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):6, 176

               
               
               Conread position:68-630
               
               
               Cow position:chr26:11301386-11301941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 85

               
               
               Conread position:78-803
               
               
               Cow position:chr26:5674773-5675488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:529
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):228, 69

               
               
               Conread position:79-327
               
               
               Cow position:chr26:12655561-12655798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):49, 137

               
               
               Conread position:81-448
               
               
               Cow position:chr26:9851038-9850649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:272
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):31, 23

               
               
               Conread position:81-448
               
               
               Cow position:chr26:9854502-9854115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:272
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):31, 23

               
               
               Conread position:93-669
               
               
               Cow position:chr26:20254696-20255247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):484, 14

               
               
               Conread position:94-521
               
               
               Cow position:chr26:12665606-12666015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:281
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:97-797
               
               
               Cow position:chr26:12574774-12574087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:706
               
               
               Alignm identity:545
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 108

               
               
               Conread position:101-801
               
               
               Cow position:chr26:8283415-8282738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:705
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 44

               
               
               Conread position:105-800
               
               
               Cow position:chr26:25033597-25034287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:435
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):45, 19

               
               
               Conread position:108-798
               
               
               Cow position:chr26:3691434-3692113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:698
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 213

               
               
               Conread position:109-801
               
               
               Cow position:chr26:1409894-1410568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:708
               
               
               Alignm identity:449
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):27, 104

               
               
               Conread position:112-532
               
               
               Cow position:chr26:6850537-6850119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 33

               
               
               Conread position:114-798
               
               
               Cow position:chr26:18854734-18855410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:687
               
               
               Alignm identity:527
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):237, 97

               
               
               Conread position:117-798
               
               
               Cow position:chr26:15145115-15144438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 49

               
               
               Conread position:118-793
               
               
               Cow position:chr26:4605537-4604871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:677
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):459, 137

               
               
               Conread position:121-801
               
               
               Cow position:chr26:12025907-12025238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:698
               
               
               Alignm identity:421
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):17, 49

               
               
               Conread position:123-705
               
               
               Cow position:chr26:16904435-16905001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:591
               
               
               Alignm identity:405
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 57

               
               
               Conread position:185-593
               
               
               Cow position:chr26:11537122-11536719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 10

               
               
               Conread position:224-641
               
               
               Cow position:chr26:5551522-5551939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:284
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):24, 181

               
               
               Conread position:251-793
               
               
               Cow position:chr26:30589592-30589055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:551
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):326, 15

               
               
               Conread position:278-456
               
               
               Cow position:chr26:6602009-6602188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):163, 0

               
               
               Conread position:318-799
               
               
               Cow position:chr26:12656138-12656595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 27

               
               
               Conread position:328-505
               
               
               Cow position:chr26:12659837-12659661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:332-543
               
               
               Cow position:chr26:9845755-9845547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:362-566
               
               
               Cow position:chr26:21350263-21350465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:443-798
               
               
               Cow position:chr26:8918818-8919172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 30

               
               
               Conread position:464-751
               
               
               Cow position:chr26:17997010-17996725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):66, 9

               
               
               Conread position:464-801
               
               
               Cow position:chr26:12666095-12666427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 44

               
               
               Conread position:467-798
               
               
               Cow position:chr26:18852211-18852541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 6

               
               
               Conread position:472-797
               
               
               Cow position:chr26:11635941-11635624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):37, 15

               
               
               Conread position:492-762
               
               
               Cow position:chr26:23603751-23603481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:492-798
               
               
               Cow position:chr26:9112753-9113060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:498-779
               
               
               Cow position:chr26:9845555-9845275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 30

               
               
               Conread position:503-729
               
               
               Cow position:chr26:4334169-4334398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:508-799
               
               
               Cow position:chr26:9849894-9849603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 169

               
               
               Conread position:508-799
               
               
               Cow position:chr26:9853404-9853114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 0

               
               
               Conread position:511-798
               
               
               Cow position:chr26:4806507-4806239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:214
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):68, 129

               
               
               Conread position:523-797
               
               
               Cow position:chr26:6849390-6849115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:553-797
               
               
               Cow position:chr26:23043214-23043459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):32, 191

               
               
               Conread position:658-798
               
               
               Cow position:chr26:20255382-20255516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:2-421
               
               
               Cow position:chr27:25116722-25117126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 53

               
               
               Conread position:2-800
               
               
               Cow position:chr27:26556510-26555744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:801
               
               
               Alignm identity:559
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):256, 99

               
               
               Conread position:2-801
               
               
               Cow position:chr27:25805402-25804634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:803
               
               
               Alignm identity:571
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):575, 33

               
               
               Conread position:12-797
               
               
               Cow position:chr27:9993717-9992944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:790
               
               
               Alignm identity:580
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):567, 156

               
               
               Conread position:19-797
               
               
               Cow position:chr27:26324295-26325074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:782
               
               
               Alignm identity:575
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):427, 454

               
               
               Conread position:22-756
               
               
               Cow position:chr27:2364227-2364968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:545
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 330

               
               
               Conread position:22-798
               
               
               Cow position:chr27:15540815-15541588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:779
               
               
               Alignm identity:576
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 81

               
               
               Conread position:22-798
               
               
               Cow position:chr27:16034905-16034135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:567
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):557, 39

               
               
               Conread position:23-793
               
               
               Cow position:chr27:892700-893461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:772
               
               
               Alignm identity:554
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):556, 144

               
               
               Conread position:23-797
               
               
               Cow position:chr27:14460971-14460197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:777
               
               
               Alignm identity:568
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):556, 276

               
               
               Conread position:23-798
               
               
               Cow position:chr27:1208842-1209610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:777
               
               
               Alignm identity:570
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):556, 83

               
               
               Conread position:24-797
               
               
               Cow position:chr27:27662379-27663154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:785
               
               
               Alignm identity:572
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 19

               
               
               Conread position:30-279
               
               
               Cow position:chr27:11471899-11471652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):84, 12

               
               
               Conread position:30-769
               
               
               Cow position:chr27:23334657-23335409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:758
               
               
               Alignm identity:529
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):546, 11

               
               
               Conread position:38-447
               
               
               Cow position:chr27:13897695-13898100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 45

               
               
               Conread position:41-798
               
               
               Cow position:chr27:5910370-5911122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:759
               
               
               Alignm identity:540
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):538, 243

               
               
               Conread position:63-705
               
               
               Cow position:chr27:5997200-5996587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:647
               
               
               Alignm identity:395
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):21, 42

               
               
               Conread position:67-588
               
               
               Cow position:chr27:25999517-25999018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 22

               
               
               Conread position:70-536
               
               
               Cow position:chr27:1519506-1519972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:295
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):26, 56

               
               
               Conread position:75-729
               
               
               Cow position:chr27:5906572-5907243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 102

               
               
               Conread position:78-308
               
               
               Cow position:chr27:16432009-16432242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):10, 23

               
               
               Conread position:78-669
               
               
               Cow position:chr27:28890274-28890855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 5

               
               
               Conread position:98-622
               
               
               Cow position:chr27:21288655-21288154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:532
               
               
               Alignm identity:340
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):8, 129

               
               
               Conread position:110-801
               
               
               Cow position:chr27:6006577-6007265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:463
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 48

               
               
               Conread position:112-798
               
               
               Cow position:chr27:25002958-25002276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:696
               
               
               Alignm identity:520
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 28

               
               
               Conread position:118-794
               
               
               Cow position:chr27:27051244-27051939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:703
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):310, 371

               
               
               Conread position:118-801
               
               
               Cow position:chr27:16438914-16439590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 97

               
               
               Conread position:136-798
               
               
               Cow position:chr27:15278467-15277814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:667
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 294

               
               
               Conread position:149-573
               
               
               Cow position:chr27:3996757-3996342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:282
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):234, 78

               
               
               Conread position:170-798
               
               
               Cow position:chr27:25160334-25160940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:637
               
               
               Alignm identity:398
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):126, 40

               
               
               Conread position:220-675
               
               
               Cow position:chr27:22746337-22745894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:295
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):46, 11

               
               
               Conread position:223-595
               
               
               Cow position:chr27:20138988-20138617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):52, 11

               
               
               Conread position:225-798
               
               
               Cow position:chr27:10011156-10010605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 9

               
               
               Conread position:226-786
               
               
               Cow position:chr27:26226988-26227535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):352, 97

               
               
               Conread position:374-520
               
               
               Cow position:chr27:8561424-8561572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):22, 101

               
               
               Conread position:397-784
               
               
               Cow position:chr27:22316443-22316828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 5

               
               
               Conread position:410-798
               
               
               Cow position:chr27:16432296-16432675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 45

               
               
               Conread position:411-798
               
               
               Cow position:chr27:27753324-27752937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 63

               
               
               Conread position:441-786
               
               
               Cow position:chr27:29565472-29565130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):139, 32

               
               
               Conread position:444-797
               
               
               Cow position:chr27:18560290-18560640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):133, 29

               
               
               Conread position:458-768
               
               
               Cow position:chr27:26035136-26034827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):121, 13

               
               
               Conread position:472-755
               
               
               Cow position:chr27:27197437-27197169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):91, 153

               
               
               Conread position:475-773
               
               
               Cow position:chr27:15638420-15638123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 233

               
               
               Conread position:566-794
               
               
               Cow position:chr27:8561572-8561796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 38

               
               
               Conread position:628-798
               
               
               Cow position:chr27:28078537-28078706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):30, 53

               
               
               Conread position:2-258
               
               
               Cow position:chr28:24667129-24667378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:2-270
               
               
               Cow position:chr28:2990446-2990190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):15, 25

               
               
               Conread position:2-279
               
               
               Cow position:chr28:33251839-33252129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:2-297
               
               
               Cow position:chr28:7790719-7790436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):19, 90

               
               
               Conread position:2-459
               
               
               Cow position:chr28:5796336-5796780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 97

               
               
               Conread position:2-514
               
               
               Cow position:chr28:22827575-22828068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 9

               
               
               Conread position:2-798
               
               
               Cow position:chr28:1387873-1387097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:798
               
               
               Alignm identity:592
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):575, 25

               
               
               Conread position:2-799
               
               
               Cow position:chr28:21325304-21326088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:804
               
               
               Alignm identity:560
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):338, 97

               
               
               Conread position:2-801
               
               
               Cow position:chr28:5812227-5812995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:803
               
               
               Alignm identity:586
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):197, 65

               
               
               Conread position:2-801
               
               
               Cow position:chr28:21358535-21359308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:804
               
               
               Alignm identity:599
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 82

               
               
               Conread position:2-804
               
               
               Cow position:chr28:10619588-10618805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:808
               
               
               Alignm identity:576
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 116

               
               
               Conread position:5-270
               
               
               Cow position:chr28:7739765-7740031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):230, 0

               
               
               Conread position:5-531
               
               
               Cow position:chr28:29819082-29819603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:5-655
               
               
               Cow position:chr28:26426750-26426117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:653
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):343, 97

               
               
               Conread position:12-323
               
               
               Cow position:chr28:5115552-5115251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:219
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):189, 136

               
               
               Conread position:12-488
               
               
               Cow position:chr28:34593362-34593832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:18-803
               
               
               Cow position:chr28:10582458-10581677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:789
               
               
               Alignm identity:581
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 82

               
               
               Conread position:19-777
               
               
               Cow position:chr28:17667988-17667231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:762
               
               
               Alignm identity:561
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 23

               
               
               Conread position:19-798
               
               
               Cow position:chr28:2083128-2083899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:785
               
               
               Alignm identity:569
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 24

               
               
               Conread position:20-798
               
               
               Cow position:chr28:8721915-8721146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:784
               
               
               Alignm identity:582
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 56

               
               
               Conread position:22-291
               
               
               Cow position:chr28:489018-489287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:22-657
               
               
               Cow position:chr28:15950509-15951142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:638
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 198

               
               
               Conread position:22-798
               
               
               Cow position:chr28:1952671-1953433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:782
               
               
               Alignm identity:567
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 112

               
               
               Conread position:22-798
               
               
               Cow position:chr28:6780799-6780030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:782
               
               
               Alignm identity:558
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 211

               
               
               Conread position:22-798
               
               
               Cow position:chr28:13441349-13440573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:779
               
               
               Alignm identity:578
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 205

               
               
               Conread position:22-798
               
               
               Cow position:chr28:14750075-14750850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:779
               
               
               Alignm identity:572
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 451

               
               
               Conread position:23-265
               
               
               Cow position:chr28:15378485-15378243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:23-270
               
               
               Cow position:chr28:1504170-1504417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:23-270
               
               
               Cow position:chr28:5752631-5752384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):69, 34

               
               
               Conread position:23-774
               
               
               Cow position:chr28:5565390-5566133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:755
               
               
               Alignm identity:546
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):385, 449

               
               
               Conread position:23-797
               
               
               Cow position:chr28:7001531-7002293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:779
               
               
               Alignm identity:565
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 121

               
               
               Conread position:23-797
               
               
               Cow position:chr28:8378095-8378872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:782
               
               
               Alignm identity:569
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 307

               
               
               Conread position:23-797
               
               
               Cow position:chr28:18520932-18520156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:782
               
               
               Alignm identity:568
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 182

               
               
               Conread position:23-797
               
               
               Cow position:chr28:32792850-32792077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:571
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):421, 405

               
               
               Conread position:23-798
               
               
               Cow position:chr28:22261622-22260847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:570
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):512, 449

               
               
               Conread position:23-803
               
               
               Cow position:chr28:781926-782702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:783
               
               
               Alignm identity:568
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 338

               
               
               Conread position:26-420
               
               
               Cow position:chr28:18089474-18089078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:266
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):31, 26

               
               
               Conread position:26-798
               
               
               Cow position:chr28:34648481-34649247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:787
               
               
               Alignm identity:532
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 24

               
               
               Conread position:30-271
               
               
               Cow position:chr28:15035879-15035639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:30-797
               
               
               Cow position:chr28:3193238-3192488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:770
               
               
               Alignm identity:559
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):549, 11

               
               
               Conread position:30-797
               
               
               Cow position:chr28:17388018-17388785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:772
               
               
               Alignm identity:563
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 11

               
               
               Conread position:38-488
               
               
               Cow position:chr28:1168620-1168174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):348, 0

               
               
               Conread position:38-803
               
               
               Cow position:chr28:13459518-13460280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:769
               
               
               Alignm identity:568
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):541, 178

               
               
               Conread position:39-616
               
               
               Cow position:chr28:24411951-24411386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:353
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):9, 105

               
               
               Conread position:41-420
               
               
               Cow position:chr28:13522280-13522653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:52-428
               
               
               Cow position:chr28:18181787-18181425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:240
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):14, 40

               
               
               Conread position:56-608
               
               
               Cow position:chr28:34324386-34324926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 84

               
               
               Conread position:56-760
               
               
               Cow position:chr28:15920897-15920199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):521, 155

               
               
               Conread position:58-797
               
               
               Cow position:chr28:14706107-14705368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:538
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 147

               
               
               Conread position:68-506
               
               
               Cow position:chr28:3774262-3773830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:260
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):82, 33

               
               
               Conread position:68-798
               
               
               Cow position:chr28:2591495-2592218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:735
               
               
               Alignm identity:536
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 5

               
               
               Conread position:75-803
               
               
               Cow position:chr28:15584976-15585697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:748
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 177

               
               
               Conread position:78-797
               
               
               Cow position:chr28:12149904-12150607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:523
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 25

               
               
               Conread position:79-368
               
               
               Cow position:chr28:26007618-26007903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):23, 56

               
               
               Conread position:85-798
               
               
               Cow position:chr28:9155687-9154982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:533
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 18

               
               
               Conread position:97-514
               
               
               Cow position:chr28:15681496-15681906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):239, 0

               
               
               Conread position:99-798
               
               
               Cow position:chr28:9953739-9954436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:705
               
               
               Alignm identity:539
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 313

               
               
               Conread position:111-801
               
               
               Cow position:chr28:5378094-5378768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:695
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 42

               
               
               Conread position:127-597
               
               
               Cow position:chr28:32331765-32331304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):448, 48

               
               
               Conread position:128-549
               
               
               Cow position:chr28:17330898-17330473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 185

               
               
               Conread position:138-797
               
               
               Cow position:chr28:1815223-1814564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:662
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):441, 173

               
               
               Conread position:140-793
               
               
               Cow position:chr28:7901005-7901660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:666
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):333, 100

               
               
               Conread position:149-798
               
               
               Cow position:chr28:7821920-7822561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:654
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 62

               
               
               Conread position:156-798
               
               
               Cow position:chr28:24587098-24587738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:649
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 59

               
               
               Conread position:170-618
               
               
               Cow position:chr28:10591696-10591263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:292
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):16, 148

               
               
               Conread position:171-708
               
               
               Cow position:chr28:24306979-24306453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:347
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):43, 63

               
               
               Conread position:173-436
               
               
               Cow position:chr28:2043394-2043659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):67, 58

               
               
               Conread position:195-798
               
               
               Cow position:chr28:4381108-4380541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:605
               
               
               Alignm identity:448
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):382, 55

               
               
               Conread position:245-606
               
               
               Cow position:chr28:9262898-9263242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):189, 66

               
               
               Conread position:247-435
               
               
               Cow position:chr28:2846740-2846558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:249-756
               
               
               Cow position:chr28:18102172-18101684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 98

               
               
               Conread position:255-778
               
               
               Cow position:chr28:1504615-1505135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 148

               
               
               Conread position:262-485
               
               
               Cow position:chr28:5752109-5751886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):146, 211

               
               
               Conread position:265-803
               
               
               Cow position:chr28:15378221-15377682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:542
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):312, 207

               
               
               Conread position:266-638
               
               
               Cow position:chr28:24652063-24652427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):323, 206

               
               
               Conread position:267-512
               
               
               Cow position:chr28:2989909-2989672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:183
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:292-790
               
               
               Cow position:chr28:24667379-24667874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 62

               
               
               Conread position:296-448
               
               
               Cow position:chr28:12648937-12648785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:305-797
               
               
               Cow position:chr28:33252131-33252615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):251, 16

               
               
               Conread position:314-711
               
               
               Cow position:chr28:27937630-27937242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:254
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):17, 73

               
               
               Conread position:318-793
               
               
               Cow position:chr28:5114976-5114513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 0

               
               
               Conread position:318-797
               
               
               Cow position:chr28:12410386-12409922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):265, 84

               
               
               Conread position:321-735
               
               
               Cow position:chr28:30468233-30468631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:260
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):80, 91

               
               
               Conread position:325-757
               
               
               Cow position:chr28:11027121-11026703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:284
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):226, 19

               
               
               Conread position:331-734
               
               
               Cow position:chr28:17935198-17934799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:271
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):94, 5

               
               
               Conread position:332-625
               
               
               Cow position:chr28:6657470-6657175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):26, 92

               
               
               Conread position:332-790
               
               
               Cow position:chr28:22065899-22065448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):245, 94

               
               
               Conread position:338-803
               
               
               Cow position:chr28:7740340-7740791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):241, 9

               
               
               Conread position:364-789
               
               
               Cow position:chr28:7790428-7789990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 65

               
               
               Conread position:374-797
               
               
               Cow position:chr28:9137169-9136749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 54

               
               
               Conread position:387-589
               
               
               Cow position:chr28:22233796-22233595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):190, 85

               
               
               Conread position:392-798
               
               
               Cow position:chr28:2724993-2724589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 81

               
               
               Conread position:443-777
               
               
               Cow position:chr28:12233048-12232719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 62

               
               
               Conread position:472-801
               
               
               Cow position:chr28:10871450-10871773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):63, 94

               
               
               Conread position:473-698
               
               
               Cow position:chr28:19563095-19562872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):100, 123

               
               
               Conread position:476-790
               
               
               Cow position:chr28:1167901-1167586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 94

               
               
               Conread position:476-797
               
               
               Cow position:chr28:5751726-5751402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:476-797
               
               
               Cow position:chr28:34593959-34594282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:497-797
               
               
               Cow position:chr28:29819735-29820037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:499-801
               
               
               Cow position:chr28:567965-568261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):66, 15

               
               
               Conread position:527-798
               
               
               Cow position:chr28:1931952-1931684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 13

               
               
               Conread position:528-777
               
               
               Cow position:chr28:17311976-17312219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):16, 42

               
               
               Conread position:528-800
               
               
               Cow position:chr28:2846141-2845869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 101

               
               
               Conread position:532-801
               
               
               Cow position:chr28:2989679-2989400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 12

               
               
               Conread position:533-794
               
               
               Cow position:chr28:5797470-5797730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 73

               
               
               Conread position:544-771
               
               
               Cow position:chr28:5800673-5800895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):35, 5

               
               
               Conread position:545-798
               
               
               Cow position:chr28:17324301-17324041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 177

               
               
               Conread position:545-801
               
               
               Cow position:chr28:18181100-18180850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):40, 81

               
               
               Conread position:563-799
               
               
               Cow position:chr28:10463085-10462846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:572-798
               
               
               Cow position:chr28:6539182-6538958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:146
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:576-762
               
               
               Cow position:chr28:22828097-22828283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):158, 19

               
               
               Conread position:578-798
               
               
               Cow position:chr28:485479-485259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:585-798
               
               
               Cow position:chr28:15682213-15682415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:586-771
               
               
               Cow position:chr28:2565714-2565515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:599-797
               
               
               Cow position:chr28:22233293-22233096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:159
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):195, 81

               
               
               Conread position:599-801
               
               
               Cow position:chr28:10071089-10071286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:163
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:604-801
               
               
               Cow position:chr28:29092875-29092683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):137, 103

               
               
               Conread position:621-797
               
               
               Cow position:chr28:13490277-13490453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:147
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):91, 97

               
               
               Conread position:623-797
               
               
               Cow position:chr28:5937609-5937779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):171, 84

               
               
               Conread position:633-798
               
               
               Cow position:chr28:30805549-30805384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:140
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:655-803
               
               
               Cow position:chr28:26426091-26425941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:669-798
               
               
               Cow position:chr28:24652942-24652813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-252
               
               
               Cow position:chr29:21431869-21431617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):88, 204

               
               
               Conread position:2-238
               
               
               Cow position:chr29:8663760-8663987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:2-797
               
               
               Cow position:chr29:16022019-16022799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:800
               
               
               Alignm identity:554
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 135

               
               
               Conread position:2-797
               
               
               Cow position:chr29:43322034-43322823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:799
               
               
               Alignm identity:586
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 18

               
               
               Conread position:2-798
               
               
               Cow position:chr29:35296351-35297143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:807
               
               
               Alignm identity:579
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 51

               
               
               Conread position:2-801
               
               
               Cow position:chr29:2750897-2750149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:802
               
               
               Alignm identity:559
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):466, 88

               
               
               Conread position:5-798
               
               
               Cow position:chr29:40503502-40502712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:796
               
               
               Alignm identity:573
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):572, 467

               
               
               Conread position:12-797
               
               
               Cow position:chr29:2099332-2100114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:790
               
               
               Alignm identity:580
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 14

               
               
               Conread position:12-803
               
               
               Cow position:chr29:10648759-10647978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:793
               
               
               Alignm identity:563
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):567, 14

               
               
               Conread position:22-209
               
               
               Cow position:chr29:18857292-18857105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:22-466
               
               
               Cow position:chr29:13577921-13578356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):345, 189

               
               
               Conread position:22-684
               
               
               Cow position:chr29:15969646-15968996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:665
               
               
               Alignm identity:471
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 19

               
               
               Conread position:22-689
               
               
               Cow position:chr29:16109222-16109887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:671
               
               
               Alignm identity:475
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 225

               
               
               Conread position:22-729
               
               
               Cow position:chr29:32315536-32316241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 160

               
               
               Conread position:22-794
               
               
               Cow position:chr29:15895352-15894585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:776
               
               
               Alignm identity:568
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 112

               
               
               Conread position:22-798
               
               
               Cow position:chr29:611119-610343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:782
               
               
               Alignm identity:566
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 189

               
               
               Conread position:22-798
               
               
               Cow position:chr29:27250838-27250073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:569
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):555, 19

               
               
               Conread position:22-801
               
               
               Cow position:chr29:30811040-30811794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:788
               
               
               Alignm identity:576
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 20

               
               
               Conread position:22-804
               
               
               Cow position:chr29:104078-104839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:788
               
               
               Alignm identity:571
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 15

               
               
               Conread position:23-354
               
               
               Cow position:chr29:45587803-45587472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:23-633
               
               
               Cow position:chr29:21246067-21246674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):325, 40

               
               
               Conread position:23-797
               
               
               Cow position:chr29:7431721-7430950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:777
               
               
               Alignm identity:564
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):554, 449

               
               
               Conread position:23-797
               
               
               Cow position:chr29:26165323-26164553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:777
               
               
               Alignm identity:571
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):556, 69

               
               
               Conread position:23-797
               
               
               Cow position:chr29:32539306-32540079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:779
               
               
               Alignm identity:576
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 46

               
               
               Conread position:23-797
               
               
               Cow position:chr29:38226490-38227249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:785
               
               
               Alignm identity:559
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):316, 180

               
               
               Conread position:23-797
               
               
               Cow position:chr29:45459219-45459985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:780
               
               
               Alignm identity:568
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):554, 84

               
               
               Conread position:23-798
               
               
               Cow position:chr29:48981-48211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:556
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):440, 405

               
               
               Conread position:23-803
               
               
               Cow position:chr29:20250654-20251435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:784
               
               
               Alignm identity:557
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):545, 449

               
               
               Conread position:27-801
               
               
               Cow position:chr29:30108608-30109397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:818
               
               
               Alignm identity:529
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 76

               
               
               Conread position:29-645
               
               
               Cow position:chr29:28061165-28060548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:448
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 198

               
               
               Conread position:30-797
               
               
               Cow position:chr29:23975336-23976109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:777
               
               
               Alignm identity:561
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):314, 11

               
               
               Conread position:37-798
               
               
               Cow position:chr29:6266982-6266232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:763
               
               
               Alignm identity:561
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):540, 16

               
               
               Conread position:38-797
               
               
               Cow position:chr29:19623734-19622978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:762
               
               
               Alignm identity:563
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):523, 291

               
               
               Conread position:38-797
               
               
               Cow position:chr29:19652618-19653377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:767
               
               
               Alignm identity:570
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 166

               
               
               Conread position:41-790
               
               
               Cow position:chr29:39080193-39079451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:751
               
               
               Alignm identity:547
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):536, 431

               
               
               Conread position:41-797
               
               
               Cow position:chr29:10824443-10823700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:762
               
               
               Alignm identity:541
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):291, 139

               
               
               Conread position:41-797
               
               
               Cow position:chr29:25933031-25932275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:759
               
               
               Alignm identity:561
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):538, 370

               
               
               Conread position:41-798
               
               
               Cow position:chr29:2841852-2841104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:760
               
               
               Alignm identity:565
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):476, 295

               
               
               Conread position:44-340
               
               
               Cow position:chr29:14368462-14368759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):92, 190

               
               
               Conread position:53-796
               
               
               Cow position:chr29:35196211-35196931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:749
               
               
               Alignm identity:537
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 19

               
               
               Conread position:59-798
               
               
               Cow position:chr29:5957138-5957873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:537
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):519, 31

               
               
               Conread position:67-434
               
               
               Cow position:chr29:803790-803420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:248
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):148, 32

               
               
               Conread position:67-531
               
               
               Cow position:chr29:32640329-32640779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:309
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):157, 25

               
               
               Conread position:67-552
               
               
               Cow position:chr29:32731420-32731906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:316
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):25, 111

               
               
               Conread position:67-690
               
               
               Cow position:chr29:4635421-4634815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 38

               
               
               Conread position:69-393
               
               
               Cow position:chr29:32890749-32891076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):159, 246

               
               
               Conread position:69-480
               
               
               Cow position:chr29:9644180-9643769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):351, 254

               
               
               Conread position:74-383
               
               
               Cow position:chr29:10843838-10844137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):54, 70

               
               
               Conread position:75-801
               
               
               Cow position:chr29:16017580-16016882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:467
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 183

               
               
               Conread position:76-801
               
               
               Cow position:chr29:19893315-19894044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:477
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 20

               
               
               Conread position:82-798
               
               
               Cow position:chr29:15950623-15949921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 142

               
               
               Conread position:83-584
               
               
               Cow position:chr29:32576668-32576176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:321
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):12, 25

               
               
               Conread position:85-311
               
               
               Cow position:chr29:34752128-34751910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):9, 25

               
               
               Conread position:85-505
               
               
               Cow position:chr29:12796905-12796498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 34

               
               
               Conread position:97-792
               
               
               Cow position:chr29:10848535-10847825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:533
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 11

               
               
               Conread position:97-798
               
               
               Cow position:chr29:11048851-11049547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:705
               
               
               Alignm identity:530
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 243

               
               
               Conread position:100-727
               
               
               Cow position:chr29:32948721-32949343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:638
               
               
               Alignm identity:396
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):36, 22

               
               
               Conread position:101-797
               
               
               Cow position:chr29:36599735-36599058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:706
               
               
               Alignm identity:442
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):137, 51

               
               
               Conread position:104-508
               
               
               Cow position:chr29:31121384-31121784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 123

               
               
               Conread position:105-640
               
               
               Cow position:chr29:16176172-16175659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:544
               
               
               Alignm identity:337
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):45, 35

               
               
               Conread position:108-798
               
               
               Cow position:chr29:16769718-16770392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:693
               
               
               Alignm identity:517
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 10

               
               
               Conread position:109-676
               
               
               Cow position:chr29:32220306-32220869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 39

               
               
               Conread position:109-798
               
               
               Cow position:chr29:410945-410256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:691
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):470, 12

               
               
               Conread position:109-801
               
               
               Cow position:chr29:8063326-8062622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:444
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):131, 48

               
               
               Conread position:110-797
               
               
               Cow position:chr29:34800220-34799538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:692
               
               
               Alignm identity:511
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):469, 76

               
               
               Conread position:115-783
               
               
               Cow position:chr29:14013059-14013718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:673
               
               
               Alignm identity:469
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 30

               
               
               Conread position:115-783
               
               
               Cow position:chr29:14073354-14072693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:675
               
               
               Alignm identity:470
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 31

               
               
               Conread position:118-797
               
               
               Cow position:chr29:43366401-43365734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:689
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):412, 41

               
               
               Conread position:118-798
               
               
               Cow position:chr29:21543782-21543100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:693
               
               
               Alignm identity:518
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):196, 127

               
               
               Conread position:118-798
               
               
               Cow position:chr29:27041170-27040503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 87

               
               
               Conread position:123-400
               
               
               Cow position:chr29:2468344-2468058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):200, 9

               
               
               Conread position:123-794
               
               
               Cow position:chr29:7840396-7841061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:674
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 8

               
               
               Conread position:123-797
               
               
               Cow position:chr29:2689499-2690169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:680
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 90

               
               
               Conread position:128-801
               
               
               Cow position:chr29:1714860-1715513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:678
               
               
               Alignm identity:462
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 95

               
               
               Conread position:132-552
               
               
               Cow position:chr29:34871941-34872350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:272
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):20, 9

               
               
               Conread position:167-801
               
               
               Cow position:chr29:37046508-37045871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:656
               
               
               Alignm identity:405
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):191, 118

               
               
               Conread position:170-801
               
               
               Cow position:chr29:30261784-30261154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:641
               
               
               Alignm identity:388
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):185, 74

               
               
               Conread position:218-617
               
               
               Cow position:chr29:31180815-31181212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):359, 16

               
               
               Conread position:226-485
               
               
               Cow position:chr29:9855220-9854965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:227-625
               
               
               Cow position:chr29:21427355-21426962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):350, 17

               
               
               Conread position:227-693
               
               
               Cow position:chr29:13853321-13852861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):350, 65

               
               
               Conread position:232-639
               
               
               Cow position:chr29:39313886-39313481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:270
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):163, 122

               
               
               Conread position:235-689
               
               
               Cow position:chr29:28630283-28630733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:280
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):199, 92

               
               
               Conread position:254-400
               
               
               Cow position:chr29:42801913-42802055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:254-475
               
               
               Cow position:chr29:42650053-42650271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):146, 7

               
               
               Conread position:265-780
               
               
               Cow position:chr29:17662658-17663155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 207

               
               
               Conread position:273-691
               
               
               Cow position:chr29:7855719-7856138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:281
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):138, 44

               
               
               Conread position:279-583
               
               
               Cow position:chr29:2368148-2367855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):299, 145

               
               
               Conread position:283-779
               
               
               Cow position:chr29:11855354-11855852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 77

               
               
               Conread position:293-687
               
               
               Cow position:chr29:24198855-24198461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:260
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):62, 29

               
               
               Conread position:319-648
               
               
               Cow position:chr29:11229297-11228973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):21, 57

               
               
               Conread position:320-798
               
               
               Cow position:chr29:34925263-34925748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:325-801
               
               
               Cow position:chr29:22966455-22965988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:300
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):5, 22

               
               
               Conread position:347-797
               
               
               Cow position:chr29:19884888-19885339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):232, 126

               
               
               Conread position:360-800
               
               
               Cow position:chr29:13669470-13669024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:292
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):155, 20

               
               
               Conread position:361-797
               
               
               Cow position:chr29:27981085-27980650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):218, 112

               
               
               Conread position:367-552
               
               
               Cow position:chr29:43791021-43791202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:374-615
               
               
               Cow position:chr29:5983334-5983094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 54

               
               
               Conread position:376-775
               
               
               Cow position:chr29:11841514-11841904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 11

               
               
               Conread position:381-797
               
               
               Cow position:chr29:14585780-14586191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 93

               
               
               Conread position:388-708
               
               
               Cow position:chr29:13648277-13648577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):189, 86

               
               
               Conread position:396-798
               
               
               Cow position:chr29:670189-669788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 77

               
               
               Conread position:405-801
               
               
               Cow position:chr29:45587469-45587086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 68

               
               
               Conread position:443-777
               
               
               Cow position:chr29:42650199-42650534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 30

               
               
               Conread position:443-777
               
               
               Cow position:chr29:42802059-42802394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 30

               
               
               Conread position:443-798
               
               
               Cow position:chr29:18857030-18856675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 30

               
               
               Conread position:447-798
               
               
               Cow position:chr29:2466418-2466065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 26

               
               
               Conread position:455-798
               
               
               Cow position:chr29:13581998-13582337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 18

               
               
               Conread position:456-801
               
               
               Cow position:chr29:803424-803084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 22

               
               
               Conread position:464-801
               
               
               Cow position:chr29:27845278-27845610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):38, 9

               
               
               Conread position:465-801
               
               
               Cow position:chr29:9643824-9643484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 146

               
               
               Conread position:473-780
               
               
               Cow position:chr29:4056093-4056402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 29

               
               
               Conread position:492-786
               
               
               Cow position:chr29:35034049-35033755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):28, 155

               
               
               Conread position:492-797
               
               
               Cow position:chr29:12796400-12796114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 25

               
               
               Conread position:497-797
               
               
               Cow position:chr29:10844212-10844508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):12, 20

               
               
               Conread position:584-803
               
               
               Cow position:chr29:18395627-18395848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:605-798
               
               
               Cow position:chr29:31181492-31181684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:155
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:614-799
               
               
               Cow position:chr29:24709163-24708979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):102, 38

               
               
               Conread position:621-798
               
               
               Cow position:chr29:21426932-21426761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:146
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:664-801
               
               
               Cow position:chr29:14086313-14086179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:668-801
               
               
               Cow position:chr29:5983070-5982935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:672-794
               
               
               Cow position:chr29:15968718-15968596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-613
               
               
               Cow position:chr3:63005749-63005144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 91

               
               
               Conread position:1-800
               
               
               Cow position:chr3:50128473-50127690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:806
               
               
               Alignm identity:542
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 10

               
               
               Conread position:2-250
               
               
               Cow position:chr3:17951069-17951308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):19, 28

               
               
               Conread position:2-261
               
               
               Cow position:chr3:18464355-18464099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):197, 104

               
               
               Conread position:2-280
               
               
               Cow position:chr3:46502428-46502704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):13, 17

               
               
               Conread position:2-417
               
               
               Cow position:chr3:19801823-19802230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:2-460
               
               
               Cow position:chr3:49545776-49545328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):388, 39

               
               
               Conread position:2-461
               
               
               Cow position:chr3:52865353-52864899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 0

               
               
               Conread position:2-498
               
               
               Cow position:chr3:19692683-19692208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 52

               
               
               Conread position:2-512
               
               
               Cow position:chr3:2909678-2909194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:2-639
               
               
               Cow position:chr3:14634682-14634084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:640
               
               
               Alignm identity:469
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 29

               
               
               Conread position:2-798
               
               
               Cow position:chr3:42431625-42432418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:809
               
               
               Alignm identity:585
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 17

               
               
               Conread position:2-798
               
               
               Cow position:chr3:56341033-56340240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:805
               
               
               Alignm identity:585
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 17

               
               
               Conread position:2-801
               
               
               Cow position:chr3:3054014-3054786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:802
               
               
               Alignm identity:581
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 87

               
               
               Conread position:2-801
               
               
               Cow position:chr3:3979788-3980574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:810
               
               
               Alignm identity:561
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 8

               
               
               Conread position:2-801
               
               
               Cow position:chr3:64358767-64357979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:803
               
               
               Alignm identity:593
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):351, 34

               
               
               Conread position:3-499
               
               
               Cow position:chr3:49677155-49677645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 203

               
               
               Conread position:4-790
               
               
               Cow position:chr3:30929076-30929822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:794
               
               
               Alignm identity:520
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 8

               
               
               Conread position:5-369
               
               
               Cow position:chr3:5996475-5996113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:246
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):96, 289

               
               
               Conread position:5-778
               
               
               Cow position:chr3:5882935-5883706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:776
               
               
               Alignm identity:561
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 200

               
               
               Conread position:5-784
               
               
               Cow position:chr3:2711561-2710789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:782
               
               
               Alignm identity:574
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 11

               
               
               Conread position:5-804
               
               
               Cow position:chr3:59860760-59861559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:802
               
               
               Alignm identity:587
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 11

               
               
               Conread position:12-783
               
               
               Cow position:chr3:30313964-30314739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:785
               
               
               Alignm identity:568
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):385, 14

               
               
               Conread position:13-651
               
               
               Cow position:chr3:79433801-79433165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:665
               
               
               Alignm identity:420
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):30, 16

               
               
               Conread position:13-798
               
               
               Cow position:chr3:19938315-19939071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:787
               
               
               Alignm identity:543
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 445

               
               
               Conread position:19-246
               
               
               Cow position:chr3:53515142-53515369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:19-758
               
               
               Cow position:chr3:23291996-23291256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:545
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 24

               
               
               Conread position:21-396
               
               
               Cow position:chr3:14440316-14439943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 213

               
               
               Conread position:22-270
               
               
               Cow position:chr3:7159369-7159129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):240, 69

               
               
               Conread position:22-303
               
               
               Cow position:chr3:24359673-24359954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):189, 214

               
               
               Conread position:22-585
               
               
               Cow position:chr3:72704609-72705172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 198

               
               
               Conread position:22-612
               
               
               Cow position:chr3:4285300-4285887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 84

               
               
               Conread position:22-704
               
               
               Cow position:chr3:46678501-46677821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:684
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):555, 406

               
               
               Conread position:22-730
               
               
               Cow position:chr3:17829235-17828530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:710
               
               
               Alignm identity:520
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):555, 301

               
               
               Conread position:22-733
               
               
               Cow position:chr3:32146671-32145970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):551, 69

               
               
               Conread position:22-760
               
               
               Cow position:chr3:15989616-15988878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:749
               
               
               Alignm identity:554
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 190

               
               
               Conread position:22-797
               
               
               Cow position:chr3:21183265-21182500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:780
               
               
               Alignm identity:577
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):474, 19

               
               
               Conread position:22-797
               
               
               Cow position:chr3:36882499-36881735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:779
               
               
               Alignm identity:563
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 19

               
               
               Conread position:22-798
               
               
               Cow position:chr3:2916881-2917648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:779
               
               
               Alignm identity:578
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 166

               
               
               Conread position:22-798
               
               
               Cow position:chr3:19878076-19878845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:779
               
               
               Alignm identity:566
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 69

               
               
               Conread position:22-798
               
               
               Cow position:chr3:32623591-32622850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:545
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 159

               
               
               Conread position:22-798
               
               
               Cow position:chr3:36117078-36117850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:791
               
               
               Alignm identity:558
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):324, 198

               
               
               Conread position:22-798
               
               
               Cow position:chr3:46861887-46861116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:780
               
               
               Alignm identity:560
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 212

               
               
               Conread position:22-798
               
               
               Cow position:chr3:47082232-47081471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:779
               
               
               Alignm identity:575
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):501, 43

               
               
               Conread position:22-798
               
               
               Cow position:chr3:49614560-49613790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:578
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):558, 82

               
               
               Conread position:22-798
               
               
               Cow position:chr3:64028671-64027899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:779
               
               
               Alignm identity:574
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 211

               
               
               Conread position:22-798
               
               
               Cow position:chr3:64650036-64650813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:788
               
               
               Alignm identity:573
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 83

               
               
               Conread position:22-798
               
               
               Cow position:chr3:66891542-66890776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:780
               
               
               Alignm identity:567
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 183

               
               
               Conread position:22-800
               
               
               Cow position:chr3:3522426-3523210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:787
               
               
               Alignm identity:565
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 211

               
               
               Conread position:22-801
               
               
               Cow position:chr3:24313890-24314659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:783
               
               
               Alignm identity:572
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 198

               
               
               Conread position:23-545
               
               
               Cow position:chr3:40340548-40340030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:524
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 30

               
               
               Conread position:23-762
               
               
               Cow position:chr3:18357458-18356737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:518
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 32

               
               
               Conread position:23-797
               
               
               Cow position:chr3:18810917-18811687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:573
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):423, 180

               
               
               Conread position:23-797
               
               
               Cow position:chr3:57485309-57484543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:777
               
               
               Alignm identity:571
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):556, 209

               
               
               Conread position:23-801
               
               
               Cow position:chr3:10239065-10239839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:781
               
               
               Alignm identity:570
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 182

               
               
               Conread position:23-801
               
               
               Cow position:chr3:69932814-69933586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:782
               
               
               Alignm identity:568
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):556, 83

               
               
               Conread position:24-801
               
               
               Cow position:chr3:16867371-16866583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:806
               
               
               Alignm identity:530
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 9

               
               
               Conread position:27-662
               
               
               Cow position:chr3:37968501-37969130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:638
               
               
               Alignm identity:455
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 200

               
               
               Conread position:30-803
               
               
               Cow position:chr3:75041725-75040976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:779
               
               
               Alignm identity:577
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 11

               
               
               Conread position:32-798
               
               
               Cow position:chr3:22335321-22336075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:768
               
               
               Alignm identity:570
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):541, 59

               
               
               Conread position:35-797
               
               
               Cow position:chr3:34031471-34030712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:765
               
               
               Alignm identity:555
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):539, 6

               
               
               Conread position:36-714
               
               
               Cow position:chr3:57856162-57856840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:682
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 200

               
               
               Conread position:37-540
               
               
               Cow position:chr3:56650838-56650340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 109

               
               
               Conread position:37-798
               
               
               Cow position:chr3:594023-594763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:764
               
               
               Alignm identity:549
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):540, 68

               
               
               Conread position:38-720
               
               
               Cow position:chr3:38865836-38866504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:684
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):541, 237

               
               
               Conread position:38-797
               
               
               Cow position:chr3:48061394-48060645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:762
               
               
               Alignm identity:551
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):541, 210

               
               
               Conread position:38-797
               
               
               Cow position:chr3:78027983-78027223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:762
               
               
               Alignm identity:565
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):541, 435

               
               
               Conread position:41-578
               
               
               Cow position:chr3:47273535-47273028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:538
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):282, 0

               
               
               Conread position:41-710
               
               
               Cow position:chr3:43040259-43039607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:672
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 96

               
               
               Conread position:41-798
               
               
               Cow position:chr3:72629503-72630257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:760
               
               
               Alignm identity:567
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):538, 91

               
               
               Conread position:41-804
               
               
               Cow position:chr3:24592180-24591434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:780
               
               
               Alignm identity:551
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 214

               
               
               Conread position:43-797
               
               
               Cow position:chr3:5954735-5953999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:757
               
               
               Alignm identity:539
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):536, 62

               
               
               Conread position:56-400
               
               
               Cow position:chr3:49309219-49308894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):137, 65

               
               
               Conread position:56-801
               
               
               Cow position:chr3:84864212-84863485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:756
               
               
               Alignm identity:452
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):94, 86

               
               
               Conread position:57-797
               
               
               Cow position:chr3:64017915-64017178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:548
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):446, 58

               
               
               Conread position:60-505
               
               
               Cow position:chr3:60387825-60388274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:284
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):72, 377

               
               
               Conread position:60-801
               
               
               Cow position:chr3:17936615-17935873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:751
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 153

               
               
               Conread position:63-801
               
               
               Cow position:chr3:16072623-16073319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 52

               
               
               Conread position:67-548
               
               
               Cow position:chr3:58208631-58208161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:324
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):254, 25

               
               
               Conread position:67-798
               
               
               Cow position:chr3:2633378-2634107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:547
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 34

               
               
               Conread position:67-798
               
               
               Cow position:chr3:66119108-66119842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:549
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 35

               
               
               Conread position:67-801
               
               
               Cow position:chr3:5830170-5829439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:740
               
               
               Alignm identity:559
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 138

               
               
               Conread position:67-801
               
               
               Cow position:chr3:18542953-18542216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:740
               
               
               Alignm identity:560
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 408

               
               
               Conread position:67-801
               
               
               Cow position:chr3:32842964-32842259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 24

               
               
               Conread position:67-804
               
               
               Cow position:chr3:15177784-15178507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:529
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 23

               
               
               Conread position:68-798
               
               
               Cow position:chr3:3805833-3806514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:736
               
               
               Alignm identity:518
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 90

               
               
               Conread position:68-799
               
               
               Cow position:chr3:19723118-19722432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:737
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 22

               
               
               Conread position:68-801
               
               
               Cow position:chr3:57500052-57499356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:521
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 80

               
               
               Conread position:69-311
               
               
               Cow position:chr3:83700678-83700445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:69-678
               
               
               Cow position:chr3:21945949-21945342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 30

               
               
               Conread position:69-801
               
               
               Cow position:chr3:36099249-36098529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 196

               
               
               Conread position:69-801
               
               
               Cow position:chr3:45775608-45774908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:736
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):461, 112

               
               
               Conread position:70-485
               
               
               Cow position:chr3:69216858-69216439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:262
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):42, 75

               
               
               Conread position:72-798
               
               
               Cow position:chr3:207701-206974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:735
               
               
               Alignm identity:553
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 345

               
               
               Conread position:75-798
               
               
               Cow position:chr3:45032206-45032928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:542
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 136

               
               
               Conread position:76-801
               
               
               Cow position:chr3:18729673-18728950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 30

               
               
               Conread position:78-505
               
               
               Cow position:chr3:39326160-39326581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 18

               
               
               Conread position:78-798
               
               
               Cow position:chr3:41212270-41211550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:533
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):499, 394

               
               
               Conread position:78-801
               
               
               Cow position:chr3:36126871-36127583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):251, 79

               
               
               Conread position:79-730
               
               
               Cow position:chr3:65584133-65583489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:669
               
               
               Alignm identity:449
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 28

               
               
               Conread position:83-587
               
               
               Cow position:chr3:4739424-4738966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:332
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):494, 44

               
               
               Conread position:85-804
               
               
               Cow position:chr3:60210690-60209988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 109

               
               
               Conread position:92-801
               
               
               Cow position:chr3:32618428-32617731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:442
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):29, 45

               
               
               Conread position:96-494
               
               
               Cow position:chr3:36691705-36691311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 234

               
               
               Conread position:96-801
               
               
               Cow position:chr3:6684938-6685639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:530
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 323

               
               
               Conread position:97-365
               
               
               Cow position:chr3:13513714-13513450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):169, 0

               
               
               Conread position:97-798
               
               
               Cow position:chr3:31354765-31354078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:704
               
               
               Alignm identity:541
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 21

               
               
               Conread position:97-798
               
               
               Cow position:chr3:55230216-55229514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:531
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 30

               
               
               Conread position:99-797
               
               
               Cow position:chr3:48231485-48230819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:520
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):481, 142

               
               
               Conread position:100-801
               
               
               Cow position:chr3:77929302-77928619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:442
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):301, 46

               
               
               Conread position:101-608
               
               
               Cow position:chr3:78018987-78019492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:330
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):113, 7

               
               
               Conread position:101-789
               
               
               Cow position:chr3:20871859-20871208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:695
               
               
               Alignm identity:435
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):49, 42

               
               
               Conread position:105-801
               
               
               Cow position:chr3:42630493-42631204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 41

               
               
               Conread position:108-546
               
               
               Cow position:chr3:30000751-30001191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:285
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):106, 33

               
               
               Conread position:108-777
               
               
               Cow position:chr3:19943576-19944216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:675
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 143

               
               
               Conread position:108-797
               
               
               Cow position:chr3:27552226-27552893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:700
               
               
               Alignm identity:425
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):16, 53

               
               
               Conread position:108-798
               
               
               Cow position:chr3:2653619-2654289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:693
               
               
               Alignm identity:532
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):469, 93

               
               
               Conread position:110-798
               
               
               Cow position:chr3:6781890-6782571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):469, 215

               
               
               Conread position:110-803
               
               
               Cow position:chr3:40822888-40823581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:698
               
               
               Alignm identity:520
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):463, 318

               
               
               Conread position:115-469
               
               
               Cow position:chr3:49140902-49140553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):50, 43

               
               
               Conread position:115-592
               
               
               Cow position:chr3:7322831-7323292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:319
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):28, 17

               
               
               Conread position:116-771
               
               
               Cow position:chr3:53410436-53411068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:657
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):530, 73

               
               
               Conread position:118-753
               
               
               Cow position:chr3:5047676-5047042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:638
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 133

               
               
               Conread position:118-798
               
               
               Cow position:chr3:9716319-9716997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:516
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):248, 237

               
               
               Conread position:118-798
               
               
               Cow position:chr3:31898461-31897790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:684
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 32

               
               
               Conread position:118-798
               
               
               Cow position:chr3:77474272-77474949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:519
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):370, 55

               
               
               Conread position:118-804
               
               
               Cow position:chr3:42580457-42579776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:688
               
               
               Alignm identity:521
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):459, 258

               
               
               Conread position:119-400
               
               
               Cow position:chr3:7168113-7168393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):228, 0

               
               
               Conread position:121-709
               
               
               Cow position:chr3:46805834-46806407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:376
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):99, 15

               
               
               Conread position:122-779
               
               
               Cow position:chr3:70084124-70083486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:659
               
               
               Alignm identity:490
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):426, 40

               
               
               Conread position:123-366
               
               
               Cow position:chr3:66618703-66618939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:125-798
               
               
               Cow position:chr3:472068-472719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:676
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 79

               
               
               Conread position:128-797
               
               
               Cow position:chr3:19757442-19756772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:673
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 278

               
               
               Conread position:131-801
               
               
               Cow position:chr3:47179683-47179013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:674
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 96

               
               
               Conread position:135-472
               
               
               Cow position:chr3:14588213-14588545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):257, 71

               
               
               Conread position:135-798
               
               
               Cow position:chr3:34396523-34395895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:668
               
               
               Alignm identity:470
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 115

               
               
               Conread position:147-798
               
               
               Cow position:chr3:45869655-45869031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:655
               
               
               Alignm identity:478
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):243, 59

               
               
               Conread position:160-801
               
               
               Cow position:chr3:26949066-26949702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:651
               
               
               Alignm identity:470
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 39

               
               
               Conread position:164-798
               
               
               Cow position:chr3:56320866-56321502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:643
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 70

               
               
               Conread position:167-501
               
               
               Cow position:chr3:3932322-3932636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:217
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:169-710
               
               
               Cow position:chr3:54865123-54864600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:544
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 31

               
               
               Conread position:170-801
               
               
               Cow position:chr3:54785334-54785946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:637
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 130

               
               
               Conread position:173-646
               
               
               Cow position:chr3:48475142-48475610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:296
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):47, 88

               
               
               Conread position:179-767
               
               
               Cow position:chr3:50914879-50915462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 32

               
               
               Conread position:219-754
               
               
               Cow position:chr3:66990407-66990929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:541
               
               
               Alignm identity:405
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 173

               
               
               Conread position:221-800
               
               
               Cow position:chr3:58947068-58947646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:583
               
               
               Alignm identity:458
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):197, 89

               
               
               Conread position:222-587
               
               
               Cow position:chr3:40104305-40103954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):356, 32

               
               
               Conread position:222-798
               
               
               Cow position:chr3:51940795-51940238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 104

               
               
               Conread position:226-798
               
               
               Cow position:chr3:7159127-7158546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:586
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 244

               
               
               Conread position:230-534
               
               
               Cow position:chr3:2053658-2053957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):45, 14

               
               
               Conread position:234-560
               
               
               Cow position:chr3:64821259-64821585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):26, 163

               
               
               Conread position:234-641
               
               
               Cow position:chr3:80871532-80871925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):343, 16

               
               
               Conread position:236-514
               
               
               Cow position:chr3:17951984-17952264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 239

               
               
               Conread position:245-801
               
               
               Cow position:chr3:4026910-4027463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:561
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 93

               
               
               Conread position:246-798
               
               
               Cow position:chr3:18463940-18463402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:557
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):535, 65

               
               
               Conread position:267-797
               
               
               Cow position:chr3:66638396-66638927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:534
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):267, 206

               
               
               Conread position:268-801
               
               
               Cow position:chr3:56097199-56097710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:537
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 6

               
               
               Conread position:281-705
               
               
               Cow position:chr3:49333072-49333485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):298, 57

               
               
               Conread position:291-664
               
               
               Cow position:chr3:63242041-63241702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:266
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):270, 61

               
               
               Conread position:292-535
               
               
               Cow position:chr3:57900895-57901138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:184
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):12, 182

               
               
               Conread position:294-705
               
               
               Cow position:chr3:42445383-42444990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:274
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):285, 111

               
               
               Conread position:294-798
               
               
               Cow position:chr3:21305481-21304996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):257, 23

               
               
               Conread position:310-801
               
               
               Cow position:chr3:14754596-14754108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):246, 118

               
               
               Conread position:318-801
               
               
               Cow position:chr3:29594911-29595384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 75

               
               
               Conread position:318-801
               
               
               Cow position:chr3:54783251-54783733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):259, 20

               
               
               Conread position:319-798
               
               
               Cow position:chr3:7168503-7168979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 155

               
               
               Conread position:320-727
               
               
               Cow position:chr3:17775810-17776201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 25

               
               
               Conread position:322-749
               
               
               Cow position:chr3:57501060-57500651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:286
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):256, 130

               
               
               Conread position:324-797
               
               
               Cow position:chr3:17898216-17898668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:329
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):31, 21

               
               
               Conread position:325-801
               
               
               Cow position:chr3:5995980-5995505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):254, 22

               
               
               Conread position:327-801
               
               
               Cow position:chr3:28929916-28929454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:307
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):203, 8

               
               
               Conread position:334-778
               
               
               Cow position:chr3:53515343-53515780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):201, 26

               
               
               Conread position:347-648
               
               
               Cow position:chr3:13274203-13273901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):36, 126

               
               
               Conread position:359-797
               
               
               Cow position:chr3:66619928-66620359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):433, 10

               
               
               Conread position:362-798
               
               
               Cow position:chr3:18859171-18859601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):374, 111

               
               
               Conread position:371-749
               
               
               Cow position:chr3:29327218-29326842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 14

               
               
               Conread position:375-801
               
               
               Cow position:chr3:19802424-19802839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 98

               
               
               Conread position:416-669
               
               
               Cow position:chr3:45671801-45672057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):45, 23

               
               
               Conread position:423-801
               
               
               Cow position:chr3:26822681-26822319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 51

               
               
               Conread position:441-793
               
               
               Cow position:chr3:34093613-34093267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 25

               
               
               Conread position:441-801
               
               
               Cow position:chr3:52864641-52864279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 11

               
               
               Conread position:443-797
               
               
               Cow position:chr3:23214229-23213875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 30

               
               
               Conread position:458-630
               
               
               Cow position:chr3:6189056-6189234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):81, 16

               
               
               Conread position:458-800
               
               
               Cow position:chr3:77423528-77423863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 11

               
               
               Conread position:463-803
               
               
               Cow position:chr3:14439908-14439570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 10

               
               
               Conread position:464-687
               
               
               Cow position:chr3:49276264-49276045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):115, 10

               
               
               Conread position:466-797
               
               
               Cow position:chr3:49137685-49137353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 7

               
               
               Conread position:466-801
               
               
               Cow position:chr3:39326575-39326907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 11

               
               
               Conread position:466-801
               
               
               Cow position:chr3:83234269-83233939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 7

               
               
               Conread position:470-789
               
               
               Cow position:chr3:56395973-56396292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:224
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):76, 9

               
               
               Conread position:472-774
               
               
               Cow position:chr3:13518421-13518131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 186

               
               
               Conread position:478-797
               
               
               Cow position:chr3:49677653-49677973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 135

               
               
               Conread position:479-740
               
               
               Cow position:chr3:40211249-40210989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):19, 104

               
               
               Conread position:481-797
               
               
               Cow position:chr3:60083759-60083448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):68, 60

               
               
               Conread position:492-777
               
               
               Cow position:chr3:2908474-2908191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 16

               
               
               Conread position:496-804
               
               
               Cow position:chr3:40157621-40157316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 137

               
               
               Conread position:497-797
               
               
               Cow position:chr3:49545322-49545020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:497-798
               
               
               Cow position:chr3:45895673-45895371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:497-798
               
               
               Cow position:chr3:45974382-45974684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:498-698
               
               
               Cow position:chr3:42997643-42997449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):82, 40

               
               
               Conread position:500-801
               
               
               Cow position:chr3:33277298-33277601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):89, 129

               
               
               Conread position:503-798
               
               
               Cow position:chr3:77442774-77443063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):40, 21

               
               
               Conread position:510-801
               
               
               Cow position:chr3:19891082-19890798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:211
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):68, 88

               
               
               Conread position:511-798
               
               
               Cow position:chr3:68700070-68699786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 156

               
               
               Conread position:511-798
               
               
               Cow position:chr3:68873848-68873568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 41

               
               
               Conread position:519-797
               
               
               Cow position:chr3:49162604-49162880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:203
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):16, 9

               
               
               Conread position:533-790
               
               
               Cow position:chr3:6660147-6660401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):240, 32

               
               
               Conread position:543-797
               
               
               Cow position:chr3:42688528-42688781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):35, 167

               
               
               Conread position:548-804
               
               
               Cow position:chr3:12680473-12680234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):152, 31

               
               
               Conread position:552-798
               
               
               Cow position:chr3:36864419-36864172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:555-746
               
               
               Cow position:chr3:24642735-24642927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):23, 153

               
               
               Conread position:564-766
               
               
               Cow position:chr3:75203277-75203480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):100, 143

               
               
               Conread position:564-801
               
               
               Cow position:chr3:82541369-82541611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):13, 64

               
               
               Conread position:613-801
               
               
               Cow position:chr3:26837760-26837576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:618-801
               
               
               Cow position:chr3:63004726-63004545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):69, 166

               
               
               Conread position:619-801
               
               
               Cow position:chr3:14632690-14632509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:154
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:621-762
               
               
               Cow position:chr3:40997982-40998124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:623-798
               
               
               Cow position:chr3:7481220-7481045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:623-798
               
               
               Cow position:chr3:29331265-29331090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:150
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:641-797
               
               
               Cow position:chr3:53713078-53713234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:653-798
               
               
               Cow position:chr3:40340070-40339925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:688-803
               
               
               Cow position:chr3:37969124-37969239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:92
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-799
               
               
               Cow position:chr4:46663406-46664185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:806
               
               
               Alignm identity:576
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 15

               
               
               Conread position:2-804
               
               
               Cow position:chr4:34185649-34184886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:813
               
               
               Alignm identity:587
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 76

               
               
               Conread position:3-262
               
               
               Cow position:chr4:54955169-54955429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:4-790
               
               
               Cow position:chr4:25600402-25599635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:788
               
               
               Alignm identity:568
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):575, 246

               
               
               Conread position:4-797
               
               
               Cow position:chr4:28830243-28831020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:800
               
               
               Alignm identity:577
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 86

               
               
               Conread position:5-371
               
               
               Cow position:chr4:46713133-46712776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 0

               
               
               Conread position:5-797
               
               
               Cow position:chr4:355115-355901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:796
               
               
               Alignm identity:580
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 11

               
               
               Conread position:5-797
               
               
               Cow position:chr4:44724285-44725075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:795
               
               
               Alignm identity:582
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):574, 73

               
               
               Conread position:5-803
               
               
               Cow position:chr4:13491772-13492574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:805
               
               
               Alignm identity:587
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 470

               
               
               Conread position:8-618
               
               
               Cow position:chr4:31668520-31669122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 59

               
               
               Conread position:12-320
               
               
               Cow position:chr4:3357933-3358239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 17

               
               
               Conread position:21-798
               
               
               Cow position:chr4:602212-602985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:779
               
               
               Alignm identity:570
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):558, 313

               
               
               Conread position:21-798
               
               
               Cow position:chr4:18516111-18516888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:779
               
               
               Alignm identity:572
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):557, 451

               
               
               Conread position:22-327
               
               
               Cow position:chr4:41954011-41954315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):78, 83

               
               
               Conread position:22-421
               
               
               Cow position:chr4:9311454-9311852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 70

               
               
               Conread position:22-507
               
               
               Cow position:chr4:23114959-23114476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 54

               
               
               Conread position:22-720
               
               
               Cow position:chr4:528211-528907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:702
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 61

               
               
               Conread position:22-794
               
               
               Cow position:chr4:47764954-47764183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:775
               
               
               Alignm identity:570
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):517, 450

               
               
               Conread position:22-798
               
               
               Cow position:chr4:101712-100941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:564
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):557, 123

               
               
               Conread position:22-798
               
               
               Cow position:chr4:157745-158507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:779
               
               
               Alignm identity:564
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 53

               
               
               Conread position:22-798
               
               
               Cow position:chr4:1931404-1930632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:779
               
               
               Alignm identity:569
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 189

               
               
               Conread position:22-798
               
               
               Cow position:chr4:3124997-3125787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:794
               
               
               Alignm identity:577
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):517, 450

               
               
               Conread position:22-798
               
               
               Cow position:chr4:5879402-5880157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:572
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):557, 140

               
               
               Conread position:22-798
               
               
               Cow position:chr4:6269405-6268640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:572
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):555, 189

               
               
               Conread position:22-798
               
               
               Cow position:chr4:13547240-13548021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:784
               
               
               Alignm identity:577
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 209

               
               
               Conread position:22-798
               
               
               Cow position:chr4:30308217-30307467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:780
               
               
               Alignm identity:559
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):360, 96

               
               
               Conread position:22-798
               
               
               Cow position:chr4:65224318-65223542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:780
               
               
               Alignm identity:582
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 214

               
               
               Conread position:23-320
               
               
               Cow position:chr4:57978640-57978931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:23-336
               
               
               Cow position:chr4:33074165-33073855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:220
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):117, 18

               
               
               Conread position:23-750
               
               
               Cow position:chr4:4905372-4906090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:534
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 19

               
               
               Conread position:23-777
               
               
               Cow position:chr4:29532497-29531744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:757
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 182

               
               
               Conread position:23-783
               
               
               Cow position:chr4:3960813-3961569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:764
               
               
               Alignm identity:570
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 19

               
               
               Conread position:23-796
               
               
               Cow position:chr4:24445981-24445217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:776
               
               
               Alignm identity:564
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):251, 45

               
               
               Conread position:23-797
               
               
               Cow position:chr4:6491129-6490373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:776
               
               
               Alignm identity:557
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):771, 405

               
               
               Conread position:23-797
               
               
               Cow position:chr4:33493028-33493816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:795
               
               
               Alignm identity:566
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):245, 452

               
               
               Conread position:23-797
               
               
               Cow position:chr4:36895591-36896359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:777
               
               
               Alignm identity:567
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):554, 449

               
               
               Conread position:23-797
               
               
               Cow position:chr4:41330657-41331430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:780
               
               
               Alignm identity:570
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):322, 363

               
               
               Conread position:23-797
               
               
               Cow position:chr4:43320419-43319655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:571
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):512, 449

               
               
               Conread position:23-797
               
               
               Cow position:chr4:43880328-43881100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:576
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):367, 60

               
               
               Conread position:24-354
               
               
               Cow position:chr4:64982643-64982968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):32, 40

               
               
               Conread position:29-798
               
               
               Cow position:chr4:16055817-16056593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:784
               
               
               Alignm identity:567
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 318

               
               
               Conread position:30-579
               
               
               Cow position:chr4:1050397-1049851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:555
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 11

               
               
               Conread position:30-797
               
               
               Cow position:chr4:48025631-48026388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:770
               
               
               Alignm identity:568
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):547, 11

               
               
               Conread position:38-797
               
               
               Cow position:chr4:45050063-45049307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:763
               
               
               Alignm identity:554
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):352, 298

               
               
               Conread position:41-327
               
               
               Cow position:chr4:41118362-41118650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:201
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):216, 0

               
               
               Conread position:41-508
               
               
               Cow position:chr4:10407996-10408482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 103

               
               
               Conread position:51-798
               
               
               Cow position:chr4:6215301-6214572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:755
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 81

               
               
               Conread position:52-777
               
               
               Cow position:chr4:9424895-9424196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:736
               
               
               Alignm identity:451
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):26, 11

               
               
               Conread position:56-801
               
               
               Cow position:chr4:22471460-22472163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:749
               
               
               Alignm identity:481
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 117

               
               
               Conread position:56-801
               
               
               Cow position:chr4:40825000-40824258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:755
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 154

               
               
               Conread position:65-801
               
               
               Cow position:chr4:11394062-11393351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:741
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):402, 7

               
               
               Conread position:67-436
               
               
               Cow position:chr4:6449622-6449261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:255
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):95, 31

               
               
               Conread position:67-575
               
               
               Cow position:chr4:51044617-51044130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 25

               
               
               Conread position:69-568
               
               
               Cow position:chr4:11383694-11384165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):383, 120

               
               
               Conread position:69-757
               
               
               Cow position:chr4:1464651-1463974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:694
               
               
               Alignm identity:501
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):374, 30

               
               
               Conread position:75-486
               
               
               Cow position:chr4:54190146-54190534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:79-801
               
               
               Cow position:chr4:8598861-8598164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:510
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 180

               
               
               Conread position:82-470
               
               
               Cow position:chr4:58883385-58883017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:260
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):133, 22

               
               
               Conread position:82-754
               
               
               Cow position:chr4:3829768-3830423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:680
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 157

               
               
               Conread position:82-797
               
               
               Cow position:chr4:16359175-16359875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:517
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):497, 20

               
               
               Conread position:82-801
               
               
               Cow position:chr4:21338702-21338008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:538
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):497, 19

               
               
               Conread position:85-648
               
               
               Cow position:chr4:40406296-40405754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:361
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):36, 18

               
               
               Conread position:85-797
               
               
               Cow position:chr4:12241942-12241226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:529
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 390

               
               
               Conread position:86-801
               
               
               Cow position:chr4:5023825-5023149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:435
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):126, 13

               
               
               Conread position:95-801
               
               
               Cow position:chr4:4175737-4176415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:452
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 120

               
               
               Conread position:97-797
               
               
               Cow position:chr4:47718299-47717615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:708
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):243, 107

               
               
               Conread position:97-801
               
               
               Cow position:chr4:66925298-66925992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:708
               
               
               Alignm identity:522
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):251, 74

               
               
               Conread position:100-723
               
               
               Cow position:chr4:59517715-59517081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:647
               
               
               Alignm identity:401
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):143, 8

               
               
               Conread position:100-801
               
               
               Cow position:chr4:38957984-38957283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 48

               
               
               Conread position:100-803
               
               
               Cow position:chr4:46536753-46537434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:709
               
               
               Alignm identity:434
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):114, 65

               
               
               Conread position:102-784
               
               
               Cow position:chr4:6255939-6256605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:695
               
               
               Alignm identity:429
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):48, 33

               
               
               Conread position:105-800
               
               
               Cow position:chr4:38928348-38929005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:701
               
               
               Alignm identity:437
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):86, 95

               
               
               Conread position:108-719
               
               
               Cow position:chr4:22028137-22027522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:624
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 66

               
               
               Conread position:113-797
               
               
               Cow position:chr4:17926947-17926263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:689
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 92

               
               
               Conread position:115-332
               
               
               Cow position:chr4:11617747-11617971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:115-780
               
               
               Cow position:chr4:38903529-38904171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:674
               
               
               Alignm identity:430
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 29

               
               
               Conread position:140-801
               
               
               Cow position:chr4:17531075-17530436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:665
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 80

               
               
               Conread position:149-401
               
               
               Cow position:chr4:60265444-60265191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):159, 78

               
               
               Conread position:149-797
               
               
               Cow position:chr4:61109737-61109119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:649
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:149-800
               
               
               Cow position:chr4:1497410-1496765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:661
               
               
               Alignm identity:442
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 142

               
               
               Conread position:170-467
               
               
               Cow position:chr4:27442460-27442751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):158, 41

               
               
               Conread position:177-631
               
               
               Cow position:chr4:1371641-1371179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 76

               
               
               Conread position:185-797
               
               
               Cow position:chr4:32211545-32212159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:457
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 289

               
               
               Conread position:215-758
               
               
               Cow position:chr4:39272529-39271985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:549
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):362, 49

               
               
               Conread position:220-798
               
               
               Cow position:chr4:18425102-18424533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):359, 25

               
               
               Conread position:222-708
               
               
               Cow position:chr4:496521-496056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 43

               
               
               Conread position:222-801
               
               
               Cow position:chr4:15193456-15194048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:609
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 20

               
               
               Conread position:222-801
               
               
               Cow position:chr4:46571905-46572468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:588
               
               
               Alignm identity:354
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):191, 68

               
               
               Conread position:237-801
               
               
               Cow position:chr4:66179554-66178993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:455
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):342, 13

               
               
               Conread position:273-801
               
               
               Cow position:chr4:969573-969048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 117

               
               
               Conread position:278-798
               
               
               Cow position:chr4:27332926-27333427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:399
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):166, 47

               
               
               Conread position:281-471
               
               
               Cow position:chr4:33630524-33630713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):55, 148

               
               
               Conread position:282-504
               
               
               Cow position:chr4:12608028-12607808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:173
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):139, 57

               
               
               Conread position:293-801
               
               
               Cow position:chr4:26887356-26886870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 52

               
               
               Conread position:294-801
               
               
               Cow position:chr4:54157516-54157988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:336
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):103, 143

               
               
               Conread position:305-728
               
               
               Cow position:chr4:15263483-15263068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:289
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):81, 16

               
               
               Conread position:307-691
               
               
               Cow position:chr4:24198696-24198329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:252
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):39, 115

               
               
               Conread position:318-797
               
               
               Cow position:chr4:57979143-57979619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):261, 155

               
               
               Conread position:318-798
               
               
               Cow position:chr4:11618374-11618842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 14

               
               
               Conread position:319-797
               
               
               Cow position:chr4:33073584-33073118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):258, 153

               
               
               Conread position:321-734
               
               
               Cow position:chr4:33835473-33835078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:263
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):102, 13

               
               
               Conread position:327-801
               
               
               Cow position:chr4:14375747-14375303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:310
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):449, 42

               
               
               Conread position:333-802
               
               
               Cow position:chr4:62565516-62565980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):246, 15

               
               
               Conread position:334-647
               
               
               Cow position:chr4:21564673-21564961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:221
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):17, 120

               
               
               Conread position:334-796
               
               
               Cow position:chr4:9101870-9102326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):243, 139

               
               
               Conread position:395-780
               
               
               Cow position:chr4:41119601-41119987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 79

               
               
               Conread position:395-801
               
               
               Cow position:chr4:60264975-60264573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 80

               
               
               Conread position:429-801
               
               
               Cow position:chr4:23493369-23493711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:262
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):150, 44

               
               
               Conread position:439-801
               
               
               Cow position:chr4:42927360-42927716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):31, 51

               
               
               Conread position:459-702
               
               
               Cow position:chr4:60673526-60673758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):120, 24

               
               
               Conread position:472-803
               
               
               Cow position:chr4:12586963-12587297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:478-797
               
               
               Cow position:chr4:47517994-47518296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:479-798
               
               
               Cow position:chr4:61256568-61256883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 185

               
               
               Conread position:483-777
               
               
               Cow position:chr4:33593834-33594118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):282, 38

               
               
               Conread position:492-797
               
               
               Cow position:chr4:61716497-61716208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:492-801
               
               
               Cow position:chr4:44776756-44776453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):53, 76

               
               
               Conread position:505-798
               
               
               Cow position:chr4:9355073-9354779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:535-789
               
               
               Cow position:chr4:51044194-51043951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):40, 57

               
               
               Conread position:537-801
               
               
               Cow position:chr4:11384690-11384950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:196
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):38, 15

               
               
               Conread position:553-771
               
               
               Cow position:chr4:41987603-41987383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):25, 67

               
               
               Conread position:556-719
               
               
               Cow position:chr4:27443203-27443370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:564-798
               
               
               Cow position:chr4:9587020-9587255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:578-777
               
               
               Cow position:chr4:60630613-60630431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:578-801
               
               
               Cow position:chr4:26749109-26748905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:609-797
               
               
               Cow position:chr4:4415885-4416074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:154
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):185, 0

               
               
               Conread position:614-797
               
               
               Cow position:chr4:10408485-10408665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):95, 47

               
               
               Conread position:623-797
               
               
               Cow position:chr4:31565488-31565312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:640-798
               
               
               Cow position:chr4:41954307-41954466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:640-798
               
               
               Cow position:chr4:41957962-41958121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:655-798
               
               
               Cow position:chr4:18190255-18190397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:659-804
               
               
               Cow position:chr4:31669122-31669269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:1-801
               
               
               Cow position:chr5:49594161-49593366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:806
               
               
               Alignm identity:604
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):341, 89

               
               
               Conread position:1-803
               
               
               Cow position:chr5:30578615-30579415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:807
               
               
               Alignm identity:584
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):347, 174

               
               
               Conread position:2-334
               
               
               Cow position:chr5:41963627-41963307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:232
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):197, 35

               
               
               Conread position:2-385
               
               
               Cow position:chr5:58747193-58747558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:2-400
               
               
               Cow position:chr5:6519198-6519575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:2-471
               
               
               Cow position:chr5:23716650-23716190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):426, 95

               
               
               Conread position:2-496
               
               
               Cow position:chr5:12682200-12681725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:503
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):434, 59

               
               
               Conread position:2-536
               
               
               Cow position:chr5:27488328-27488841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:537
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 15

               
               
               Conread position:2-546
               
               
               Cow position:chr5:4384529-4385060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:547
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 34

               
               
               Conread position:2-759
               
               
               Cow position:chr5:61273866-61273140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:760
               
               
               Alignm identity:556
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 102

               
               
               Conread position:2-797
               
               
               Cow position:chr5:2430841-2430047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:798
               
               
               Alignm identity:591
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 40

               
               
               Conread position:2-801
               
               
               Cow position:chr5:41530269-41529505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:802
               
               
               Alignm identity:579
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):266, 28

               
               
               Conread position:2-801
               
               
               Cow position:chr5:46659003-46659805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:830
               
               
               Alignm identity:578
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 37

               
               
               Conread position:2-803
               
               
               Cow position:chr5:46739298-46738495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:811
               
               
               Alignm identity:593
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 9

               
               
               Conread position:5-613
               
               
               Cow position:chr5:34695880-34696484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):334, 76

               
               
               Conread position:5-803
               
               
               Cow position:chr5:37731639-37732439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:802
               
               
               Alignm identity:583
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):572, 467

               
               
               Conread position:8-798
               
               
               Cow position:chr5:46644011-46644773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:794
               
               
               Alignm identity:574
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 9

               
               
               Conread position:19-758
               
               
               Cow position:chr5:6158885-6158152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:743
               
               
               Alignm identity:524
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):371, 149

               
               
               Conread position:19-784
               
               
               Cow position:chr5:64782708-64781946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:771
               
               
               Alignm identity:576
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 90

               
               
               Conread position:22-351
               
               
               Cow position:chr5:10443891-10443565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):66, 226

               
               
               Conread position:22-370
               
               
               Cow position:chr5:23960797-23960451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):319, 0

               
               
               Conread position:22-421
               
               
               Cow position:chr5:18663558-18663957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 205

               
               
               Conread position:22-508
               
               
               Cow position:chr5:59144090-59144575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 207

               
               
               Conread position:22-605
               
               
               Cow position:chr5:10844562-10843981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:585
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):555, 69

               
               
               Conread position:22-634
               
               
               Cow position:chr5:53714567-53715176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:616
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 84

               
               
               Conread position:22-794
               
               
               Cow position:chr5:14379479-14380244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:775
               
               
               Alignm identity:573
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 190

               
               
               Conread position:22-797
               
               
               Cow position:chr5:10776933-10776178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:780
               
               
               Alignm identity:559
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 56

               
               
               Conread position:22-797
               
               
               Cow position:chr5:46663316-46664089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:783
               
               
               Alignm identity:563
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):220, 189

               
               
               Conread position:22-798
               
               
               Cow position:chr5:2530587-2531357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:779
               
               
               Alignm identity:577
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 112

               
               
               Conread position:22-798
               
               
               Cow position:chr5:3963790-3964538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:777
               
               
               Alignm identity:560
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:22-798
               
               
               Cow position:chr5:4019887-4019112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:779
               
               
               Alignm identity:562
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 110

               
               
               Conread position:22-798
               
               
               Cow position:chr5:27909957-27909186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:780
               
               
               Alignm identity:579
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 189

               
               
               Conread position:22-798
               
               
               Cow position:chr5:31705888-31706660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:780
               
               
               Alignm identity:573
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 159

               
               
               Conread position:22-798
               
               
               Cow position:chr5:32771793-32772568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:779
               
               
               Alignm identity:572
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 110

               
               
               Conread position:22-798
               
               
               Cow position:chr5:45182781-45182017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:785
               
               
               Alignm identity:581
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 86

               
               
               Conread position:22-798
               
               
               Cow position:chr5:46775403-46776166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:784
               
               
               Alignm identity:566
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 83

               
               
               Conread position:22-798
               
               
               Cow position:chr5:47831782-47831027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:560
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 140

               
               
               Conread position:22-798
               
               
               Cow position:chr5:58195313-58196088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:781
               
               
               Alignm identity:575
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 177

               
               
               Conread position:22-798
               
               
               Cow position:chr5:59059929-59060704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:785
               
               
               Alignm identity:565
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 309

               
               
               Conread position:22-798
               
               
               Cow position:chr5:59481562-59482339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:783
               
               
               Alignm identity:570
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 209

               
               
               Conread position:22-801
               
               
               Cow position:chr5:26079907-26079129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:782
               
               
               Alignm identity:578
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 110

               
               
               Conread position:23-421
               
               
               Cow position:chr5:34167376-34167769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:266
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):156, 18

               
               
               Conread position:23-507
               
               
               Cow position:chr5:30088395-30087927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 29

               
               
               Conread position:23-755
               
               
               Cow position:chr5:1342484-1341755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:531
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 111

               
               
               Conread position:23-797
               
               
               Cow position:chr5:416408-415636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:553
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 222

               
               
               Conread position:23-797
               
               
               Cow position:chr5:2913763-2914534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:779
               
               
               Alignm identity:564
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 49

               
               
               Conread position:25-656
               
               
               Cow position:chr5:56858388-56857761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:644
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 204

               
               
               Conread position:25-723
               
               
               Cow position:chr5:49100958-49101645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 9

               
               
               Conread position:27-771
               
               
               Cow position:chr5:61020522-61019790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:761
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 14

               
               
               Conread position:29-798
               
               
               Cow position:chr5:24576232-24577001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:774
               
               
               Alignm identity:564
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 63

               
               
               Conread position:29-798
               
               
               Cow position:chr5:48468954-48468193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:771
               
               
               Alignm identity:569
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):550, 70

               
               
               Conread position:30-268
               
               
               Cow position:chr5:73490006-73489769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):164, 11

               
               
               Conread position:30-417
               
               
               Cow position:chr5:37755820-37755433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 197

               
               
               Conread position:30-427
               
               
               Cow position:chr5:59282082-59282478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:30-762
               
               
               Cow position:chr5:3504922-3504200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:734
               
               
               Alignm identity:531
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):549, 11

               
               
               Conread position:30-800
               
               
               Cow position:chr5:32674405-32673652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:775
               
               
               Alignm identity:589
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):549, 68

               
               
               Conread position:37-793
               
               
               Cow position:chr5:48809386-48808634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:759
               
               
               Alignm identity:546
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):230, 46

               
               
               Conread position:37-797
               
               
               Cow position:chr5:57483225-57482460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:767
               
               
               Alignm identity:557
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 438

               
               
               Conread position:37-803
               
               
               Cow position:chr5:7273194-7273918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:770
               
               
               Alignm identity:545
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):353, 13

               
               
               Conread position:38-797
               
               
               Cow position:chr5:3785138-3785871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:761
               
               
               Alignm identity:540
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):756, 291

               
               
               Conread position:38-797
               
               
               Cow position:chr5:54793291-54792549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:770
               
               
               Alignm identity:536
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):412, 443

               
               
               Conread position:41-351
               
               
               Cow position:chr5:25001586-25001282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:210
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):25, 11

               
               
               Conread position:41-797
               
               
               Cow position:chr5:4068320-4069074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:759
               
               
               Alignm identity:548
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):532, 345

               
               
               Conread position:41-797
               
               
               Cow position:chr5:28006560-28007276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:759
               
               
               Alignm identity:532
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 122

               
               
               Conread position:41-797
               
               
               Cow position:chr5:55627334-55628072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:760
               
               
               Alignm identity:549
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):398, 288

               
               
               Conread position:41-798
               
               
               Cow position:chr5:49119946-49119195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:760
               
               
               Alignm identity:541
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):492, 20

               
               
               Conread position:42-803
               
               
               Cow position:chr5:32945211-32945964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:764
               
               
               Alignm identity:583
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 124

               
               
               Conread position:50-804
               
               
               Cow position:chr5:27059783-27059032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:756
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):42, 59

               
               
               Conread position:52-679
               
               
               Cow position:chr5:57366659-57366057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 84

               
               
               Conread position:52-698
               
               
               Cow position:chr5:55097351-55096726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:653
               
               
               Alignm identity:406
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):158, 49

               
               
               Conread position:52-741
               
               
               Cow position:chr5:60054301-60053634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:703
               
               
               Alignm identity:429
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):165, 8

               
               
               Conread position:58-553
               
               
               Cow position:chr5:51771990-51771508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 18

               
               
               Conread position:58-797
               
               
               Cow position:chr5:24097993-24098735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:542
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 417

               
               
               Conread position:58-801
               
               
               Cow position:chr5:14347014-14346290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:751
               
               
               Alignm identity:494
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 24

               
               
               Conread position:58-801
               
               
               Cow position:chr5:41359389-41358657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:755
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 25

               
               
               Conread position:58-801
               
               
               Cow position:chr5:49128605-49129308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:478
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 51

               
               
               Conread position:67-313
               
               
               Cow position:chr5:23688115-23687868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):175, 0

               
               
               Conread position:67-623
               
               
               Cow position:chr5:27683389-27682859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:379
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 135

               
               
               Conread position:67-643
               
               
               Cow position:chr5:58061463-58060909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:364
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):60, 25

               
               
               Conread position:67-779
               
               
               Cow position:chr5:26090475-26089765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 79

               
               
               Conread position:67-795
               
               
               Cow position:chr5:62359141-62359866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:756
               
               
               Alignm identity:464
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):346, 24

               
               
               Conread position:68-648
               
               
               Cow position:chr5:6187917-6188497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:386
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):45, 35

               
               
               Conread position:68-756
               
               
               Cow position:chr5:58056379-58055708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:702
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 104

               
               
               Conread position:72-797
               
               
               Cow position:chr5:32733883-32733167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:541
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 62

               
               
               Conread position:72-798
               
               
               Cow position:chr5:28030851-28031563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:531
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 185

               
               
               Conread position:72-798
               
               
               Cow position:chr5:29008723-29009439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:542
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 15

               
               
               Conread position:75-323
               
               
               Cow position:chr5:42504122-42504367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):140, 120

               
               
               Conread position:75-483
               
               
               Cow position:chr5:35299427-35299834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):397, 0

               
               
               Conread position:75-801
               
               
               Cow position:chr5:46631048-46630352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:728
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):504, 119

               
               
               Conread position:79-459
               
               
               Cow position:chr5:76124184-76123804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:242
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):21, 124

               
               
               Conread position:82-775
               
               
               Cow position:chr5:10918168-10918861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:695
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):495, 390

               
               
               Conread position:87-797
               
               
               Cow position:chr5:14659712-14659018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:719
               
               
               Alignm identity:487
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):237, 14

               
               
               Conread position:92-603
               
               
               Cow position:chr5:23227638-23228147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 176

               
               
               Conread position:95-506
               
               
               Cow position:chr5:28570073-28570488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:278
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):53, 147

               
               
               Conread position:97-798
               
               
               Cow position:chr5:26769199-26769890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:705
               
               
               Alignm identity:516
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 171

               
               
               Conread position:97-798
               
               
               Cow position:chr5:45699667-45700352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:706
               
               
               Alignm identity:521
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):243, 51

               
               
               Conread position:97-798
               
               
               Cow position:chr5:49181672-49182355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:706
               
               
               Alignm identity:521
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):311, 147

               
               
               Conread position:98-418
               
               
               Cow position:chr5:52804721-52805041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):242, 296

               
               
               Conread position:99-779
               
               
               Cow position:chr5:24329682-24330341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:688
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 235

               
               
               Conread position:99-798
               
               
               Cow position:chr5:9687019-9686341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:705
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 113

               
               
               Conread position:100-801
               
               
               Cow position:chr5:51162306-51162987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 43

               
               
               Conread position:100-804
               
               
               Cow position:chr5:29866190-29866899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:452
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):155, 273

               
               
               Conread position:101-389
               
               
               Cow position:chr5:54619862-54620143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):27, 50

               
               
               Conread position:101-428
               
               
               Cow position:chr5:68472172-68471846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):135, 106

               
               
               Conread position:102-798
               
               
               Cow position:chr5:34202341-34203021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:702
               
               
               Alignm identity:533
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 23

               
               
               Conread position:102-798
               
               
               Cow position:chr5:39165410-39164714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:702
               
               
               Alignm identity:530
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 233

               
               
               Conread position:104-702
               
               
               Cow position:chr5:18665354-18665951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:439
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 123

               
               
               Conread position:105-764
               
               
               Cow position:chr5:26507852-26508488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:663
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 45

               
               
               Conread position:105-801
               
               
               Cow position:chr5:39416999-39417697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:462
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 126

               
               
               Conread position:108-782
               
               
               Cow position:chr5:63480472-63479809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:688
               
               
               Alignm identity:429
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):18, 124

               
               
               Conread position:109-796
               
               
               Cow position:chr5:43343847-43343186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:696
               
               
               Alignm identity:426
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):66, 52

               
               
               Conread position:110-506
               
               
               Cow position:chr5:27000605-27000973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:261
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:110-799
               
               
               Cow position:chr5:62412099-62412773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:699
               
               
               Alignm identity:426
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):89, 95

               
               
               Conread position:113-506
               
               
               Cow position:chr5:53614098-53614488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:253
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):37, 33

               
               
               Conread position:122-495
               
               
               Cow position:chr5:29123379-29123019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:123-671
               
               
               Cow position:chr5:16104352-16103819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:554
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 84

               
               
               Conread position:136-584
               
               
               Cow position:chr5:27569577-27570027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 5

               
               
               Conread position:136-798
               
               
               Cow position:chr5:41551498-41550840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:665
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):441, 98

               
               
               Conread position:137-504
               
               
               Cow position:chr5:12644449-12644095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:253
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):49, 184

               
               
               Conread position:142-798
               
               
               Cow position:chr5:53627328-53626676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:674
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 12

               
               
               Conread position:149-413
               
               
               Cow position:chr5:12185098-12185362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:190
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:152-769
               
               
               Cow position:chr5:31102152-31101554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:449
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 53

               
               
               Conread position:185-798
               
               
               Cow position:chr5:54932744-54932132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:463
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):394, 288

               
               
               Conread position:191-558
               
               
               Cow position:chr5:57518208-57517854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:232
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):210, 148

               
               
               Conread position:191-779
               
               
               Cow position:chr5:41933328-41932763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:594
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 66

               
               
               Conread position:191-799
               
               
               Cow position:chr5:27652508-27651895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:475
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 5

               
               
               Conread position:205-625
               
               
               Cow position:chr5:46005893-46005463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 270

               
               
               Conread position:215-729
               
               
               Cow position:chr5:34968641-34968133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:314
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):178, 7

               
               
               Conread position:226-794
               
               
               Cow position:chr5:29042026-29042593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):351, 246

               
               
               Conread position:226-797
               
               
               Cow position:chr5:26054282-26054834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:576
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):351, 156

               
               
               Conread position:226-798
               
               
               Cow position:chr5:44458997-44459569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):353, 247

               
               
               Conread position:227-800
               
               
               Cow position:chr5:74729699-74730259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:582
               
               
               Alignm identity:348
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):117, 46

               
               
               Conread position:232-801
               
               
               Cow position:chr5:28022688-28023242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:578
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 79

               
               
               Conread position:233-610
               
               
               Cow position:chr5:52609864-52610233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):176, 40

               
               
               Conread position:245-801
               
               
               Cow position:chr5:51861531-51861011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:558
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):335, 25

               
               
               Conread position:246-393
               
               
               Cow position:chr5:57976885-57977036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:255-797
               
               
               Cow position:chr5:47073455-47073981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:554
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 81

               
               
               Conread position:263-690
               
               
               Cow position:chr5:25207187-25206762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 66

               
               
               Conread position:275-797
               
               
               Cow position:chr5:49518230-49518744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):304, 54

               
               
               Conread position:295-498
               
               
               Cow position:chr5:23767882-23768078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):164, 91

               
               
               Conread position:306-801
               
               
               Cow position:chr5:27038830-27039306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 17

               
               
               Conread position:318-551
               
               
               Cow position:chr5:18653614-18653844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:322-723
               
               
               Cow position:chr5:32310356-32309962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:268
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):174, 152

               
               
               Conread position:325-798
               
               
               Cow position:chr5:6589408-6588934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):254, 148

               
               
               Conread position:334-801
               
               
               Cow position:chr5:41962612-41962149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):245, 75

               
               
               Conread position:336-799
               
               
               Cow position:chr5:28335207-28334738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:307
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):65, 71

               
               
               Conread position:349-696
               
               
               Cow position:chr5:4088442-4088789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):230, 124

               
               
               Conread position:354-801
               
               
               Cow position:chr5:58334941-58334507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:291
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):225, 125

               
               
               Conread position:360-804
               
               
               Cow position:chr5:25000999-25000554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 15

               
               
               Conread position:365-789
               
               
               Cow position:chr5:51319589-51319175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 33

               
               
               Conread position:367-801
               
               
               Cow position:chr5:26069058-26068640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 105

               
               
               Conread position:374-788
               
               
               Cow position:chr5:39872081-39872477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:273
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):205, 31

               
               
               Conread position:388-720
               
               
               Cow position:chr5:58819958-58819626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 86

               
               
               Conread position:397-801
               
               
               Cow position:chr5:52433662-52434054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 32

               
               
               Conread position:405-710
               
               
               Cow position:chr5:5318063-5317759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 68

               
               
               Conread position:410-749
               
               
               Cow position:chr5:5786901-5786570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 9

               
               
               Conread position:436-714
               
               
               Cow position:chr5:18653764-18654047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:437-737
               
               
               Cow position:chr5:32249766-32250070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):46, 34

               
               
               Conread position:458-801
               
               
               Cow position:chr5:24108846-24108507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):23, 32

               
               
               Conread position:460-766
               
               
               Cow position:chr5:23755873-23755565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 13

               
               
               Conread position:462-798
               
               
               Cow position:chr5:20972282-20971960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 11

               
               
               Conread position:472-668
               
               
               Cow position:chr5:52805126-52805322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:160
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 95

               
               
               Conread position:481-790
               
               
               Cow position:chr5:61316935-61317240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):20, 85

               
               
               Conread position:483-671
               
               
               Cow position:chr5:39247606-39247424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):96, 21

               
               
               Conread position:483-799
               
               
               Cow position:chr5:31202846-31202542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):95, 9

               
               
               Conread position:492-666
               
               
               Cow position:chr5:27060465-27060294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):88, 15

               
               
               Conread position:492-746
               
               
               Cow position:chr5:72489107-72488847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):62, 38

               
               
               Conread position:494-800
               
               
               Cow position:chr5:57977037-57977344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 33

               
               
               Conread position:504-801
               
               
               Cow position:chr5:27001403-27001696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 24

               
               
               Conread position:505-803
               
               
               Cow position:chr5:73489769-73489468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:512-771
               
               
               Cow position:chr5:18897795-18898056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):66, 256

               
               
               Conread position:512-777
               
               
               Cow position:chr5:29436169-29435902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 10

               
               
               Conread position:528-798
               
               
               Cow position:chr5:23960498-23960229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:170
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):103, 20

               
               
               Conread position:530-801
               
               
               Cow position:chr5:27489065-27489336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:549-801
               
               
               Cow position:chr5:51771462-51771204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):29, 175

               
               
               Conread position:550-801
               
               
               Cow position:chr5:62848412-62848648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):28, 60

               
               
               Conread position:560-768
               
               
               Cow position:chr5:12644091-12643886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:170
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 79

               
               
               Conread position:564-758
               
               
               Cow position:chr5:17774189-17773994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:159
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:578-797
               
               
               Cow position:chr5:41574695-41574911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:584-801
               
               
               Cow position:chr5:67593360-67593573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):202, 86

               
               
               Conread position:587-798
               
               
               Cow position:chr5:4385130-4385332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:588-799
               
               
               Cow position:chr5:47826273-47826064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):62, 185

               
               
               Conread position:595-784
               
               
               Cow position:chr5:76123696-76123509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:157
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:599-798
               
               
               Cow position:chr5:27570000-27570197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:163
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:600-797
               
               
               Cow position:chr5:34696490-34696689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:164
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 0

               
               
               Conread position:609-798
               
               
               Cow position:chr5:10843522-10843333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:153
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:623-798
               
               
               Cow position:chr5:9042949-9043124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:144
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:628-796
               
               
               Cow position:chr5:18271524-18271691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):99, 84

               
               
               Conread position:628-801
               
               
               Cow position:chr5:27682828-27682653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):106, 90

               
               
               Conread position:644-801
               
               
               Cow position:chr5:23228163-23228317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:645-793
               
               
               Cow position:chr5:25206759-25206603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:658-804
               
               
               Cow position:chr5:27060081-27059935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:671-798
               
               
               Cow position:chr5:18665953-18666080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:673-798
               
               
               Cow position:chr5:6611972-6612097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:673-804
               
               
               Cow position:chr5:40053420-40053550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):116, 61

               
               
               Conread position:678-797
               
               
               Cow position:chr5:18122502-18122383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:678-798
               
               
               Cow position:chr5:10482814-10482934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:691-798
               
               
               Cow position:chr5:4089050-4089157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:694-798
               
               
               Cow position:chr5:35299835-35299939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:91
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:695-798
               
               
               Cow position:chr5:56145038-56144935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-526
               
               
               Cow position:chr6:39437082-39437596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:1-529
               
               
               Cow position:chr6:13977953-13978479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:538
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 52

               
               
               Conread position:1-753
               
               
               Cow position:chr6:11278251-11277513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:764
               
               
               Alignm identity:543
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):426, 29

               
               
               Conread position:1-798
               
               
               Cow position:chr6:19453386-19454143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:799
               
               
               Alignm identity:594
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):503, 82

               
               
               Conread position:2-315
               
               
               Cow position:chr6:52735840-52736147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):58, 34

               
               
               Conread position:2-371
               
               
               Cow position:chr6:43795279-43794907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:249
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):10, 17

               
               
               Conread position:2-506
               
               
               Cow position:chr6:6477017-6476519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):337, 145

               
               
               Conread position:2-511
               
               
               Cow position:chr6:12093417-12092919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):473, 19

               
               
               Conread position:2-798
               
               
               Cow position:chr6:13846480-13847260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:811
               
               
               Alignm identity:464
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):327, 48

               
               
               Conread position:2-798
               
               
               Cow position:chr6:30478532-30479327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:806
               
               
               Alignm identity:588
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):552, 248

               
               
               Conread position:2-801
               
               
               Cow position:chr6:38231713-38232508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:810
               
               
               Alignm identity:595
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):199, 43

               
               
               Conread position:5-797
               
               
               Cow position:chr6:3278514-3277722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:795
               
               
               Alignm identity:585
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):572, 163

               
               
               Conread position:5-797
               
               
               Cow position:chr6:55544891-55544099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:796
               
               
               Alignm identity:573
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):196, 200

               
               
               Conread position:5-797
               
               
               Cow position:chr6:65841025-65841812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:800
               
               
               Alignm identity:574
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 241

               
               
               Conread position:5-801
               
               
               Cow position:chr6:7180223-7179463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:802
               
               
               Alignm identity:550
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 6

               
               
               Conread position:12-514
               
               
               Cow position:chr6:40314359-40314845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 78

               
               
               Conread position:12-797
               
               
               Cow position:chr6:27530550-27529779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:788
               
               
               Alignm identity:575
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):571, 14

               
               
               Conread position:12-798
               
               
               Cow position:chr6:27468712-27469475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:788
               
               
               Alignm identity:566
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):565, 14

               
               
               Conread position:12-801
               
               
               Cow position:chr6:440144-439370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:813
               
               
               Alignm identity:508
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):37, 13

               
               
               Conread position:14-348
               
               
               Cow position:chr6:25357117-25357451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):63, 28

               
               
               Conread position:20-466
               
               
               Cow position:chr6:40274708-40275155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 207

               
               
               Conread position:22-311
               
               
               Cow position:chr6:21836659-21836358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):23, 201

               
               
               Conread position:22-369
               
               
               Cow position:chr6:41757531-41757186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 69

               
               
               Conread position:22-370
               
               
               Cow position:chr6:6935672-6935324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 214

               
               
               Conread position:22-485
               
               
               Cow position:chr6:39907609-39908064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 0

               
               
               Conread position:22-493
               
               
               Cow position:chr6:45671722-45672187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 0

               
               
               Conread position:22-532
               
               
               Cow position:chr6:65908886-65909384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 0

               
               
               Conread position:22-726
               
               
               Cow position:chr6:57870551-57869847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:708
               
               
               Alignm identity:523
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):474, 450

               
               
               Conread position:22-790
               
               
               Cow position:chr6:7142012-7141267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:770
               
               
               Alignm identity:557
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):555, 101

               
               
               Conread position:22-797
               
               
               Cow position:chr6:13103512-13104286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:781
               
               
               Alignm identity:580
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 158

               
               
               Conread position:22-797
               
               
               Cow position:chr6:35877262-35876490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:781
               
               
               Alignm identity:567
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 19

               
               
               Conread position:22-798
               
               
               Cow position:chr6:332026-331241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:791
               
               
               Alignm identity:571
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 378

               
               
               Conread position:22-798
               
               
               Cow position:chr6:1405774-1405010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:575
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):561, 68

               
               
               Conread position:22-798
               
               
               Cow position:chr6:2374163-2374928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:779
               
               
               Alignm identity:570
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 204

               
               
               Conread position:22-798
               
               
               Cow position:chr6:2554164-2554934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:779
               
               
               Alignm identity:572
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 80

               
               
               Conread position:22-798
               
               
               Cow position:chr6:17598828-17598051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:783
               
               
               Alignm identity:574
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 19

               
               
               Conread position:22-798
               
               
               Cow position:chr6:26671412-26670630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:791
               
               
               Alignm identity:568
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 196

               
               
               Conread position:22-798
               
               
               Cow position:chr6:27169029-27169809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:784
               
               
               Alignm identity:574
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):373, 382

               
               
               Conread position:22-798
               
               
               Cow position:chr6:28062804-28063564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:779
               
               
               Alignm identity:567
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 19

               
               
               Conread position:22-798
               
               
               Cow position:chr6:28492058-28491286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:561
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):557, 35

               
               
               Conread position:22-798
               
               
               Cow position:chr6:34126804-34127581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:782
               
               
               Alignm identity:568
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):482, 338

               
               
               Conread position:22-798
               
               
               Cow position:chr6:43617168-43617943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:781
               
               
               Alignm identity:572
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 189

               
               
               Conread position:22-798
               
               
               Cow position:chr6:68026234-68027020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:790
               
               
               Alignm identity:576
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 225

               
               
               Conread position:22-803
               
               
               Cow position:chr6:44151089-44150324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:784
               
               
               Alignm identity:561
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):424, 123

               
               
               Conread position:23-506
               
               
               Cow position:chr6:21686356-21686823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:23-513
               
               
               Cow position:chr6:47043970-47043489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:23-623
               
               
               Cow position:chr6:50497996-50497405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):554, 152

               
               
               Conread position:23-790
               
               
               Cow position:chr6:36525499-36526266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:773
               
               
               Alignm identity:564
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 124

               
               
               Conread position:23-793
               
               
               Cow position:chr6:24238505-24239288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:789
               
               
               Alignm identity:576
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):322, 83

               
               
               Conread position:23-797
               
               
               Cow position:chr6:8201186-8201965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:784
               
               
               Alignm identity:574
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):367, 357

               
               
               Conread position:23-797
               
               
               Cow position:chr6:15141716-15140952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:780
               
               
               Alignm identity:569
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 46

               
               
               Conread position:23-797
               
               
               Cow position:chr6:15281089-15280324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:562
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):315, 373

               
               
               Conread position:24-507
               
               
               Cow position:chr6:60384442-60384920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:308
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):32, 40

               
               
               Conread position:26-535
               
               
               Cow position:chr6:42360205-42359716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 26

               
               
               Conread position:29-798
               
               
               Cow position:chr6:44028517-44029267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:771
               
               
               Alignm identity:554
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):550, 62

               
               
               Conread position:34-470
               
               
               Cow position:chr6:63198661-63198243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:284
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):32, 11

               
               
               Conread position:37-357
               
               
               Cow position:chr6:52049-51729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):313, 297

               
               
               Conread position:37-803
               
               
               Cow position:chr6:30275714-30274944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:776
               
               
               Alignm identity:551
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 65

               
               
               Conread position:38-744
               
               
               Cow position:chr6:21971146-21971860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:517
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):520, 136

               
               
               Conread position:38-771
               
               
               Cow position:chr6:28274461-28275183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:735
               
               
               Alignm identity:530
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):545, 68

               
               
               Conread position:38-797
               
               
               Cow position:chr6:3488923-3488171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:765
               
               
               Alignm identity:552
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 166

               
               
               Conread position:38-797
               
               
               Cow position:chr6:34893538-34892778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:767
               
               
               Alignm identity:559
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):541, 136

               
               
               Conread position:38-797
               
               
               Cow position:chr6:40555141-40554359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:789
               
               
               Alignm identity:540
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 225

               
               
               Conread position:38-803
               
               
               Cow position:chr6:3890018-3889243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:780
               
               
               Alignm identity:569
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 218

               
               
               Conread position:40-798
               
               
               Cow position:chr6:65822661-65821898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:766
               
               
               Alignm identity:554
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):201, 109

               
               
               Conread position:41-280
               
               
               Cow position:chr6:2111481-2111246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:41-558
               
               
               Cow position:chr6:1823774-1823264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 0

               
               
               Conread position:41-774
               
               
               Cow position:chr6:5951763-5951042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:735
               
               
               Alignm identity:538
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):527, 79

               
               
               Conread position:41-797
               
               
               Cow position:chr6:913103-913881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:783
               
               
               Alignm identity:559
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 204

               
               
               Conread position:41-798
               
               
               Cow position:chr6:65880332-65881095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:765
               
               
               Alignm identity:559
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 437

               
               
               Conread position:44-801
               
               
               Cow position:chr6:35433013-35433761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:773
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 13

               
               
               Conread position:52-403
               
               
               Cow position:chr6:51190030-51190373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):14, 108

               
               
               Conread position:53-798
               
               
               Cow position:chr6:20561625-20560884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:747
               
               
               Alignm identity:551
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):526, 257

               
               
               Conread position:56-495
               
               
               Cow position:chr6:52803908-52804332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:286
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):72, 158

               
               
               Conread position:56-798
               
               
               Cow position:chr6:10559151-10558432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:530
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 16

               
               
               Conread position:59-798
               
               
               Cow position:chr6:6566102-6566833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:741
               
               
               Alignm identity:540
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):518, 413

               
               
               Conread position:60-705
               
               
               Cow position:chr6:39161704-39162320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:651
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 43

               
               
               Conread position:61-648
               
               
               Cow position:chr6:6838175-6838732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:591
               
               
               Alignm identity:372
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):89, 39

               
               
               Conread position:67-801
               
               
               Cow position:chr6:16671887-16672614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:741
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 34

               
               
               Conread position:68-640
               
               
               Cow position:chr6:52115757-52116322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:581
               
               
               Alignm identity:363
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):93, 28

               
               
               Conread position:69-618
               
               
               Cow position:chr6:2885746-2886256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:551
               
               
               Alignm identity:371
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):328, 12

               
               
               Conread position:69-778
               
               
               Cow position:chr6:1384342-1383669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):264, 181

               
               
               Conread position:69-799
               
               
               Cow position:chr6:65900409-65899672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:754
               
               
               Alignm identity:500
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 85

               
               
               Conread position:72-401
               
               
               Cow position:chr6:2401746-2402083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:240
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):32, 47

               
               
               Conread position:75-799
               
               
               Cow position:chr6:62396669-62397397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:750
               
               
               Alignm identity:480
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 21

               
               
               Conread position:78-798
               
               
               Cow position:chr6:29311003-29311719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:533
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 127

               
               
               Conread position:78-801
               
               
               Cow position:chr6:17045572-17046286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:726
               
               
               Alignm identity:528
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 252

               
               
               Conread position:90-798
               
               
               Cow position:chr6:33388338-33389070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:742
               
               
               Alignm identity:540
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 266

               
               
               Conread position:93-321
               
               
               Cow position:chr6:28106241-28106016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):153, 0

               
               
               Conread position:93-525
               
               
               Cow position:chr6:10054148-10054567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 79

               
               
               Conread position:93-786
               
               
               Cow position:chr6:57010323-57009646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:701
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 47

               
               
               Conread position:97-494
               
               
               Cow position:chr6:65007373-65007758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 50

               
               
               Conread position:97-642
               
               
               Cow position:chr6:68362787-68362250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:547
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):480, 198

               
               
               Conread position:98-798
               
               
               Cow position:chr6:59919745-59919057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:703
               
               
               Alignm identity:517
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 117

               
               
               Conread position:100-336
               
               
               Cow position:chr6:15896858-15896618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:100-797
               
               
               Cow position:chr6:12528362-12529054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:705
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 48

               
               
               Conread position:101-801
               
               
               Cow position:chr6:50138160-50138828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:709
               
               
               Alignm identity:440
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):114, 17

               
               
               Conread position:110-334
               
               
               Cow position:chr6:33459121-33459351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):67, 102

               
               
               Conread position:110-793
               
               
               Cow position:chr6:701493-702173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:689
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 322

               
               
               Conread position:110-798
               
               
               Cow position:chr6:13943454-13944137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:694
               
               
               Alignm identity:519
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 137

               
               
               Conread position:111-401
               
               
               Cow position:chr6:28509176-28509458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:113-270
               
               
               Cow position:chr6:13318142-13317986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:113-798
               
               
               Cow position:chr6:65927489-65928164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:687
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):467, 90

               
               
               Conread position:114-501
               
               
               Cow position:chr6:42564492-42564874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:252
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):87, 68

               
               
               Conread position:115-730
               
               
               Cow position:chr6:2955405-2954806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 108

               
               
               Conread position:115-804
               
               
               Cow position:chr6:35421014-35420372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:692
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):464, 38

               
               
               Conread position:116-625
               
               
               Cow position:chr6:11353285-11353796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 18

               
               
               Conread position:116-648
               
               
               Cow position:chr6:42723373-42722849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):393, 163

               
               
               Conread position:117-794
               
               
               Cow position:chr6:58409360-58408688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:679
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):462, 117

               
               
               Conread position:119-784
               
               
               Cow position:chr6:66231365-66232009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:670
               
               
               Alignm identity:462
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):452, 123

               
               
               Conread position:119-798
               
               
               Cow position:chr6:10500175-10499496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:680
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:124-607
               
               
               Cow position:chr6:52418123-52417658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:307
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):26, 21

               
               
               Conread position:124-786
               
               
               Cow position:chr6:10519848-10519212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:676
               
               
               Alignm identity:426
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):90, 151

               
               
               Conread position:125-728
               
               
               Cow position:chr6:42926936-42927540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:405
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 219

               
               
               Conread position:130-758
               
               
               Cow position:chr6:28474270-28474890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:636
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 93

               
               
               Conread position:137-797
               
               
               Cow position:chr6:8761733-8761077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:663
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):442, 336

               
               
               Conread position:152-777
               
               
               Cow position:chr6:34024429-34025011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:392
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):321, 33

               
               
               Conread position:153-801
               
               
               Cow position:chr6:34203096-34203735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:661
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 70

               
               
               Conread position:168-800
               
               
               Cow position:chr6:525857-526464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:638
               
               
               Alignm identity:419
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 26

               
               
               Conread position:169-601
               
               
               Cow position:chr6:20496310-20496721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:275
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):361, 49

               
               
               Conread position:169-743
               
               
               Cow position:chr6:44525151-44524595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:365
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):48, 96

               
               
               Conread position:172-789
               
               
               Cow position:chr6:34440726-34441340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:629
               
               
               Alignm identity:386
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):124, 78

               
               
               Conread position:182-551
               
               
               Cow position:chr6:11030703-11031066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):34, 41

               
               
               Conread position:208-649
               
               
               Cow position:chr6:60746821-60746385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:285
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):47, 59

               
               
               Conread position:234-801
               
               
               Cow position:chr6:37115803-37116366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 16

               
               
               Conread position:238-568
               
               
               Cow position:chr6:62488512-62488182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:227
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):26, 54

               
               
               Conread position:238-625
               
               
               Cow position:chr6:10640798-10641181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 98

               
               
               Conread position:239-801
               
               
               Cow position:chr6:59741378-59740827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):212, 21

               
               
               Conread position:245-789
               
               
               Cow position:chr6:41552704-41553229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:553
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):228, 80

               
               
               Conread position:273-801
               
               
               Cow position:chr6:37642103-37642612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 83

               
               
               Conread position:277-801
               
               
               Cow position:chr6:13317776-13317267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:526
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):302, 52

               
               
               Conread position:284-432
               
               
               Cow position:chr6:7866870-7867018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:293-694
               
               
               Cow position:chr6:49520667-49520256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 24

               
               
               Conread position:297-799
               
               
               Cow position:chr6:15476014-15476516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:519
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 27

               
               
               Conread position:307-801
               
               
               Cow position:chr6:1100848-1100356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 147

               
               
               Conread position:308-801
               
               
               Cow position:chr6:10630205-10630678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 149

               
               
               Conread position:310-794
               
               
               Cow position:chr6:13276543-13277024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:486
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 163

               
               
               Conread position:318-793
               
               
               Cow position:chr6:33459612-33460086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 151

               
               
               Conread position:325-751
               
               
               Cow position:chr6:48368152-48368556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:325-798
               
               
               Cow position:chr6:16051642-16052108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):254, 144

               
               
               Conread position:326-770
               
               
               Cow position:chr6:36229185-36228742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:273
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):71, 5

               
               
               Conread position:329-747
               
               
               Cow position:chr6:17931884-17932293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:272
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):73, 39

               
               
               Conread position:336-765
               
               
               Cow position:chr6:14763467-14763038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:274
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):12, 150

               
               
               Conread position:352-471
               
               
               Cow position:chr6:28588629-28588510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:93
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:355-801
               
               
               Cow position:chr6:11402838-11403274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:305
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):140, 81

               
               
               Conread position:364-798
               
               
               Cow position:chr6:1412145-1411712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 110

               
               
               Conread position:414-762
               
               
               Cow position:chr6:17099850-17099508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:241
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):35, 118

               
               
               Conread position:414-801
               
               
               Cow position:chr6:32330948-32330563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 60

               
               
               Conread position:422-797
               
               
               Cow position:chr6:32074882-32074508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:254
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):139, 15

               
               
               Conread position:430-800
               
               
               Cow position:chr6:25214119-25214489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 41

               
               
               Conread position:443-623
               
               
               Cow position:chr6:40240289-40240473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):47, 26

               
               
               Conread position:452-798
               
               
               Cow position:chr6:7866869-7866523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 21

               
               
               Conread position:452-798
               
               
               Cow position:chr6:43793888-43793526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 22

               
               
               Conread position:460-710
               
               
               Cow position:chr6:63198185-63197936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):5, 19

               
               
               Conread position:464-769
               
               
               Cow position:chr6:60170473-60170167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:211
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):114, 15

               
               
               Conread position:464-798
               
               
               Cow position:chr6:39908418-39908755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 138

               
               
               Conread position:466-766
               
               
               Cow position:chr6:33900727-33900426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 7

               
               
               Conread position:474-784
               
               
               Cow position:chr6:64715134-64715443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 13

               
               
               Conread position:474-798
               
               
               Cow position:chr6:3148908-3149232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 40

               
               
               Conread position:483-756
               
               
               Cow position:chr6:31568886-31568619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:203
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):47, 9

               
               
               Conread position:483-799
               
               
               Cow position:chr6:66539728-66540020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:214
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):96, 15

               
               
               Conread position:491-798
               
               
               Cow position:chr6:47043284-47042970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 75

               
               
               Conread position:495-798
               
               
               Cow position:chr6:25359430-25359738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:212
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):37, 30

               
               
               Conread position:498-651
               
               
               Cow position:chr6:52804453-52804606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):79, 111

               
               
               Conread position:498-781
               
               
               Cow position:chr6:15896504-15896230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):80, 69

               
               
               Conread position:498-801
               
               
               Cow position:chr6:35722291-35722593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):14, 25

               
               
               Conread position:508-799
               
               
               Cow position:chr6:51190440-51190727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:209
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):22, 38

               
               
               Conread position:528-664
               
               
               Cow position:chr6:65910743-65910881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:528-801
               
               
               Cow position:chr6:40315013-40315275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):11, 25

               
               
               Conread position:530-801
               
               
               Cow position:chr6:6476523-6476258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 80

               
               
               Conread position:533-798
               
               
               Cow position:chr6:28105891-28105618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 158

               
               
               Conread position:541-699
               
               
               Cow position:chr6:12092921-12092763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):38, 16

               
               
               Conread position:548-779
               
               
               Cow position:chr6:12095423-12095195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):32, 50

               
               
               Conread position:561-801
               
               
               Cow position:chr6:6155677-6155914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):19, 84

               
               
               Conread position:579-790
               
               
               Cow position:chr6:40251672-40251883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:585-786
               
               
               Cow position:chr6:6847763-6847567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:629-797
               
               
               Cow position:chr6:65007747-65007913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):144, 44

               
               
               Conread position:638-789
               
               
               Cow position:chr6:31637793-31637642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:639-798
               
               
               Cow position:chr6:10641229-10641387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:642-801
               
               
               Cow position:chr6:43608286-43608130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:663-765
               
               
               Cow position:chr6:9738793-9738895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:88
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:666-797
               
               
               Cow position:chr6:1822544-1822412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:667-784
               
               
               Cow position:chr6:58026855-58026971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:96
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:670-803
               
               
               Cow position:chr6:39437647-39437782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:672-798
               
               
               Cow position:chr6:52693125-52693251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:674-798
               
               
               Cow position:chr6:12650845-12650721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:674-798
               
               
               Cow position:chr6:65914317-65914440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:691-798
               
               
               Cow position:chr6:40275209-40275316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:696-798
               
               
               Cow position:chr6:24323255-24323153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:86
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-621
               
               
               Cow position:chr7:26844359-26844954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:380
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):196, 62

               
               
               Conread position:1-732
               
               
               Cow position:chr7:26025562-26026287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:534
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 52

               
               
               Conread position:1-781
               
               
               Cow position:chr7:1358131-1357385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:792
               
               
               Alignm identity:590
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 99

               
               
               Conread position:1-801
               
               
               Cow position:chr7:21309750-21310527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:805
               
               
               Alignm identity:599
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):339, 89

               
               
               Conread position:2-281
               
               
               Cow position:chr7:21242572-21242300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:2-297
               
               
               Cow position:chr7:30156766-30156471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 143

               
               
               Conread position:2-498
               
               
               Cow position:chr7:29469396-29469881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 96

               
               
               Conread position:2-530
               
               
               Cow position:chr7:60857821-60857322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:530
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 15

               
               
               Conread position:2-642
               
               
               Cow position:chr7:27143870-27144487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:644
               
               
               Alignm identity:443
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 52

               
               
               Conread position:2-794
               
               
               Cow position:chr7:48632935-48633693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:795
               
               
               Alignm identity:589
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):771, 88

               
               
               Conread position:2-797
               
               
               Cow position:chr7:1449024-1449800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:799
               
               
               Alignm identity:583
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):199, 45

               
               
               Conread position:2-797
               
               
               Cow position:chr7:34148643-34149416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:806
               
               
               Alignm identity:579
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 39

               
               
               Conread position:2-804
               
               
               Cow position:chr7:51013506-51014270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:806
               
               
               Alignm identity:561
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):559, 32

               
               
               Conread position:2-804
               
               
               Cow position:chr7:63020382-63021169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:804
               
               
               Alignm identity:573
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):575, 15

               
               
               Conread position:4-648
               
               
               Cow position:chr7:53990295-53990896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:648
               
               
               Alignm identity:457
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 27

               
               
               Conread position:4-789
               
               
               Cow position:chr7:24808943-24808158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:788
               
               
               Alignm identity:576
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):303, 16

               
               
               Conread position:5-209
               
               
               Cow position:chr7:33406684-33406480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):6, 13

               
               
               Conread position:5-461
               
               
               Cow position:chr7:39109180-39108748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 85

               
               
               Conread position:5-797
               
               
               Cow position:chr7:67798382-67799169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:800
               
               
               Alignm identity:580
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 11

               
               
               Conread position:6-801
               
               
               Cow position:chr7:3154316-3155086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:801
               
               
               Alignm identity:580
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 24

               
               
               Conread position:7-804
               
               
               Cow position:chr7:65808608-65807835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:806
               
               
               Alignm identity:493
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):79, 34

               
               
               Conread position:12-336
               
               
               Cow position:chr7:13538193-13537872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:12-782
               
               
               Cow position:chr7:54602383-54603153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:775
               
               
               Alignm identity:564
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 14

               
               
               Conread position:13-798
               
               
               Cow position:chr7:63384886-63385658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:791
               
               
               Alignm identity:561
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 315

               
               
               Conread position:21-742
               
               
               Cow position:chr7:27102569-27101852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:724
               
               
               Alignm identity:525
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 190

               
               
               Conread position:22-335
               
               
               Cow position:chr7:6720090-6720403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):189, 206

               
               
               Conread position:22-407
               
               
               Cow position:chr7:20294420-20294799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):283, 77

               
               
               Conread position:22-645
               
               
               Cow position:chr7:47374539-47375162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:627
               
               
               Alignm identity:454
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 214

               
               
               Conread position:22-798
               
               
               Cow position:chr7:3235140-3234365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:571
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):555, 99

               
               
               Conread position:22-798
               
               
               Cow position:chr7:3301612-3300838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:780
               
               
               Alignm identity:570
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 192

               
               
               Conread position:22-798
               
               
               Cow position:chr7:6643330-6642559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:781
               
               
               Alignm identity:578
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 229

               
               
               Conread position:22-798
               
               
               Cow position:chr7:6649111-6648338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:779
               
               
               Alignm identity:573
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):474, 228

               
               
               Conread position:22-798
               
               
               Cow position:chr7:11467184-11466421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:779
               
               
               Alignm identity:566
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):486, 82

               
               
               Conread position:22-798
               
               
               Cow position:chr7:20555239-20556032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:801
               
               
               Alignm identity:577
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 146

               
               
               Conread position:22-798
               
               
               Cow position:chr7:20799873-20799128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:780
               
               
               Alignm identity:557
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 25

               
               
               Conread position:22-798
               
               
               Cow position:chr7:61558756-61559531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:779
               
               
               Alignm identity:577
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 70

               
               
               Conread position:23-212
               
               
               Cow position:chr7:10431843-10431653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:23-508
               
               
               Cow position:chr7:38396770-38397253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):212, 333

               
               
               Conread position:23-797
               
               
               Cow position:chr7:447076-446313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:780
               
               
               Alignm identity:570
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):299, 83

               
               
               Conread position:23-797
               
               
               Cow position:chr7:21128101-21127345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:777
               
               
               Alignm identity:560
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):554, 75

               
               
               Conread position:23-797
               
               
               Cow position:chr7:21984943-21985717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:777
               
               
               Alignm identity:572
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):558, 261

               
               
               Conread position:23-797
               
               
               Cow position:chr7:34485458-34486232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:787
               
               
               Alignm identity:573
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):345, 83

               
               
               Conread position:23-797
               
               
               Cow position:chr7:46902530-46901763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:577
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 84

               
               
               Conread position:23-797
               
               
               Cow position:chr7:64242393-64241630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:568
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 181

               
               
               Conread position:23-803
               
               
               Cow position:chr7:39791280-39792080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:801
               
               
               Alignm identity:574
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):232, 0

               
               
               Conread position:26-327
               
               
               Cow position:chr7:29371201-29370916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:216
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:29-798
               
               
               Cow position:chr7:20529146-20528357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:794
               
               
               Alignm identity:576
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):212, 54

               
               
               Conread position:30-797
               
               
               Cow position:chr7:1373097-1372334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:770
               
               
               Alignm identity:572
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):549, 11

               
               
               Conread position:30-798
               
               
               Cow position:chr7:17320-16554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:770
               
               
               Alignm identity:554
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):547, 61

               
               
               Conread position:37-789
               
               
               Cow position:chr7:750485-751223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:765
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 15

               
               
               Conread position:37-798
               
               
               Cow position:chr7:25439093-25439828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:771
               
               
               Alignm identity:544
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 42

               
               
               Conread position:37-803
               
               
               Cow position:chr7:55538359-55537593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:770
               
               
               Alignm identity:569
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):540, 275

               
               
               Conread position:38-797
               
               
               Cow position:chr7:21235452-21234694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:763
               
               
               Alignm identity:564
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):539, 194

               
               
               Conread position:41-797
               
               
               Cow position:chr7:8145676-8144926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:760
               
               
               Alignm identity:549
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):304, 319

               
               
               Conread position:41-797
               
               
               Cow position:chr7:14140031-14139283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:759
               
               
               Alignm identity:557
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):538, 104

               
               
               Conread position:41-798
               
               
               Cow position:chr7:27786194-27786938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:759
               
               
               Alignm identity:541
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):532, 34

               
               
               Conread position:52-753
               
               
               Cow position:chr7:51084198-51084875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:711
               
               
               Alignm identity:462
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 34

               
               
               Conread position:54-735
               
               
               Cow position:chr7:6934675-6934040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:688
               
               
               Alignm identity:436
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):65, 9

               
               
               Conread position:55-798
               
               
               Cow position:chr7:41489708-41490427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:749
               
               
               Alignm identity:532
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 111

               
               
               Conread position:63-455
               
               
               Cow position:chr7:37416602-37416993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:254
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):26, 40

               
               
               Conread position:63-801
               
               
               Cow position:chr7:7297288-7296569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:743
               
               
               Alignm identity:478
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 161

               
               
               Conread position:67-288
               
               
               Cow position:chr7:31864450-31864662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:67-309
               
               
               Cow position:chr7:47050013-47050250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:67-339
               
               
               Cow position:chr7:20429414-20429153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):61, 70

               
               
               Conread position:67-384
               
               
               Cow position:chr7:53015089-53015388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):69, 23

               
               
               Conread position:67-630
               
               
               Cow position:chr7:20307194-20306657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):494, 41

               
               
               Conread position:67-799
               
               
               Cow position:chr7:58378601-58377891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:739
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 119

               
               
               Conread position:68-328
               
               
               Cow position:chr7:41876889-41876632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:68-495
               
               
               Cow position:chr7:49290189-49290610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 110

               
               
               Conread position:69-534
               
               
               Cow position:chr7:62680062-62679593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:308
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):159, 20

               
               
               Conread position:72-801
               
               
               Cow position:chr7:65340091-65339392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:736
               
               
               Alignm identity:454
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):19, 34

               
               
               Conread position:74-798
               
               
               Cow position:chr7:52120488-52119767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:515
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 233

               
               
               Conread position:75-482
               
               
               Cow position:chr7:522241-521843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:78-630
               
               
               Cow position:chr7:26883743-26884275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:556
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):263, 116

               
               
               Conread position:78-798
               
               
               Cow position:chr7:5661956-5662691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:530
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 304

               
               
               Conread position:78-801
               
               
               Cow position:chr7:35287964-35287239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:569
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 263

               
               
               Conread position:79-507
               
               
               Cow position:chr7:4690157-4690577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:277
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):23, 97

               
               
               Conread position:85-789
               
               
               Cow position:chr7:1400750-1400050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:528
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 17

               
               
               Conread position:86-754
               
               
               Cow position:chr7:59027626-59028263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:674
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 66

               
               
               Conread position:90-801
               
               
               Cow position:chr7:68858479-68857792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:520
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):537, 12

               
               
               Conread position:92-497
               
               
               Cow position:chr7:25686593-25686205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:259
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):381, 114

               
               
               Conread position:92-800
               
               
               Cow position:chr7:30119926-30119236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:465
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 133

               
               
               Conread position:93-750
               
               
               Cow position:chr7:26890420-26891077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:668
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):370, 191

               
               
               Conread position:95-568
               
               
               Cow position:chr7:27531243-27530778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:305
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):147, 102

               
               
               Conread position:95-801
               
               
               Cow position:chr7:27125778-27126476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:718
               
               
               Alignm identity:461
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 45

               
               
               Conread position:96-329
               
               
               Cow position:chr7:68907227-68907466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:99-393
               
               
               Cow position:chr7:35297975-35297685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 105

               
               
               Conread position:100-799
               
               
               Cow position:chr7:55281177-55280486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:457
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 123

               
               
               Conread position:101-678
               
               
               Cow position:chr7:57378861-57378307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:585
               
               
               Alignm identity:370
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):359, 117

               
               
               Conread position:101-691
               
               
               Cow position:chr7:695453-696040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:381
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):76, 104

               
               
               Conread position:101-771
               
               
               Cow position:chr7:50043325-50042690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:674
               
               
               Alignm identity:402
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):308, 95

               
               
               Conread position:102-797
               
               
               Cow position:chr7:53230407-53229706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:439
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):70, 95

               
               
               Conread position:107-804
               
               
               Cow position:chr7:24055918-24056606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:709
               
               
               Alignm identity:477
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 66

               
               
               Conread position:108-729
               
               
               Cow position:chr7:5153108-5152493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:636
               
               
               Alignm identity:392
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):42, 15

               
               
               Conread position:109-798
               
               
               Cow position:chr7:67416674-67417360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:694
               
               
               Alignm identity:526
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 81

               
               
               Conread position:110-803
               
               
               Cow position:chr7:19925181-19924502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:697
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):467, 213

               
               
               Conread position:111-799
               
               
               Cow position:chr7:67423288-67423950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:447
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):67, 35

               
               
               Conread position:113-733
               
               
               Cow position:chr7:62443107-62442497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:635
               
               
               Alignm identity:404
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):31, 43

               
               
               Conread position:115-801
               
               
               Cow position:chr7:59136067-59136722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 20

               
               
               Conread position:116-362
               
               
               Cow position:chr7:68076178-68076417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:117-776
               
               
               Cow position:chr7:54515470-54514827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:663
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 89

               
               
               Conread position:118-758
               
               
               Cow position:chr7:41870288-41869667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:645
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 59

               
               
               Conread position:118-759
               
               
               Cow position:chr7:36084972-36085614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:650
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 85

               
               
               Conread position:122-801
               
               
               Cow position:chr7:102953-102264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:708
               
               
               Alignm identity:463
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 78

               
               
               Conread position:124-798
               
               
               Cow position:chr7:11446204-11446874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:679
               
               
               Alignm identity:517
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 16

               
               
               Conread position:126-720
               
               
               Cow position:chr7:38536167-38536748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 23

               
               
               Conread position:127-678
               
               
               Cow position:chr7:65497136-65496617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:553
               
               
               Alignm identity:353
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):88, 10

               
               
               Conread position:132-798
               
               
               Cow position:chr7:21976083-21975429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:668
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):444, 296

               
               
               Conread position:149-803
               
               
               Cow position:chr7:45949478-45948827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:659
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):240, 231

               
               
               Conread position:152-566
               
               
               Cow position:chr7:51911679-51911266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 208

               
               
               Conread position:155-801
               
               
               Cow position:chr7:993912-994551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:652
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 28

               
               
               Conread position:168-666
               
               
               Cow position:chr7:67811807-67812303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 131

               
               
               Conread position:182-786
               
               
               Cow position:chr7:18709047-18709621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:611
               
               
               Alignm identity:391
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):42, 25

               
               
               Conread position:194-576
               
               
               Cow position:chr7:41487302-41487674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:252
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):46, 28

               
               
               Conread position:214-797
               
               
               Cow position:chr7:7256938-7257511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:428
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 12

               
               
               Conread position:217-506
               
               
               Cow position:chr7:67426157-67426442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:222-639
               
               
               Cow position:chr7:68436302-68435887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):308, 10

               
               
               Conread position:222-801
               
               
               Cow position:chr7:23835864-23836433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:590
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 29

               
               
               Conread position:224-786
               
               
               Cow position:chr7:3552513-3551963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 39

               
               
               Conread position:226-797
               
               
               Cow position:chr7:56990914-56991476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:577
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 18

               
               
               Conread position:226-798
               
               
               Cow position:chr7:23816220-23815652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:445
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):353, 19

               
               
               Conread position:227-690
               
               
               Cow position:chr7:26850993-26851442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 37

               
               
               Conread position:228-713
               
               
               Cow position:chr7:6489560-6489086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):349, 100

               
               
               Conread position:229-518
               
               
               Cow position:chr7:52804936-52804652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):29, 53

               
               
               Conread position:234-677
               
               
               Cow position:chr7:68778624-68778179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 208

               
               
               Conread position:234-798
               
               
               Cow position:chr7:1611446-1610893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):345, 87

               
               
               Conread position:235-625
               
               
               Cow position:chr7:68523710-68523334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:257
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):156, 90

               
               
               Conread position:235-801
               
               
               Cow position:chr7:39556332-39555775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:569
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):235, 80

               
               
               Conread position:245-797
               
               
               Cow position:chr7:33406478-33405924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:557
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 229

               
               
               Conread position:246-634
               
               
               Cow position:chr7:61349797-61349429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):331, 163

               
               
               Conread position:251-625
               
               
               Cow position:chr7:1405659-1405292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:255
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):140, 58

               
               
               Conread position:260-784
               
               
               Cow position:chr7:10431644-10431114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:532
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 219

               
               
               Conread position:268-798
               
               
               Cow position:chr7:26893538-26894086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:550
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):309, 204

               
               
               Conread position:270-803
               
               
               Cow position:chr7:3729768-3730303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:543
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 68

               
               
               Conread position:293-801
               
               
               Cow position:chr7:25101837-25102346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 186

               
               
               Conread position:298-462
               
               
               Cow position:chr7:21241974-21241814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:298-798
               
               
               Cow position:chr7:21319974-21320474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):281, 175

               
               
               Conread position:307-490
               
               
               Cow position:chr7:24421664-24421841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:309-778
               
               
               Cow position:chr7:68084617-68085089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):223, 174

               
               
               Conread position:314-801
               
               
               Cow position:chr7:47050537-47051004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):265, 112

               
               
               Conread position:317-553
               
               
               Cow position:chr7:7084558-7084323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):9, 21

               
               
               Conread position:318-797
               
               
               Cow position:chr7:13537745-13537266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):261, 155

               
               
               Conread position:319-798
               
               
               Cow position:chr7:68907686-68908145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):260, 42

               
               
               Conread position:325-597
               
               
               Cow position:chr7:545059-545327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 138

               
               
               Conread position:325-781
               
               
               Cow position:chr7:21395167-21394711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:285
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):75, 83

               
               
               Conread position:327-737
               
               
               Cow position:chr7:26925189-26924782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:328-796
               
               
               Cow position:chr7:20543764-20543309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:303
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):226, 127

               
               
               Conread position:331-798
               
               
               Cow position:chr7:68479018-68479485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:469
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):248, 142

               
               
               Conread position:340-671
               
               
               Cow position:chr7:68556750-68557063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):164, 65

               
               
               Conread position:348-799
               
               
               Cow position:chr7:29370711-29370271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 144

               
               
               Conread position:354-801
               
               
               Cow position:chr7:67484149-67484591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 74

               
               
               Conread position:360-801
               
               
               Cow position:chr7:68328561-68328981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):218, 73

               
               
               Conread position:367-684
               
               
               Cow position:chr7:20106402-20106089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:225
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):166, 61

               
               
               Conread position:370-672
               
               
               Cow position:chr7:1736015-1735734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):207, 28

               
               
               Conread position:381-798
               
               
               Cow position:chr7:35297370-35296952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):198, 93

               
               
               Conread position:395-804
               
               
               Cow position:chr7:68778231-68777832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 78

               
               
               Conread position:410-796
               
               
               Cow position:chr7:33895752-33896137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):144, 63

               
               
               Conread position:410-801
               
               
               Cow position:chr7:68478383-68478762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:264
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):171, 69

               
               
               Conread position:414-798
               
               
               Cow position:chr7:58551176-58551546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:258
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):220, 44

               
               
               Conread position:415-801
               
               
               Cow position:chr7:27540422-27540043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:418-801
               
               
               Cow position:chr7:33074225-33073842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 55

               
               
               Conread position:431-801
               
               
               Cow position:chr7:27585144-27584789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:260
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):35, 23

               
               
               Conread position:431-804
               
               
               Cow position:chr7:58993150-58993518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 48

               
               
               Conread position:440-728
               
               
               Cow position:chr7:20181422-20181136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):99, 33

               
               
               Conread position:440-801
               
               
               Cow position:chr7:19048927-19048577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):90, 15

               
               
               Conread position:445-771
               
               
               Cow position:chr7:33878400-33878080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 28

               
               
               Conread position:458-804
               
               
               Cow position:chr7:68076407-68076749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 15

               
               
               Conread position:472-801
               
               
               Cow position:chr7:39108237-39107919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 36

               
               
               Conread position:483-797
               
               
               Cow position:chr7:53366151-53365847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):47, 27

               
               
               Conread position:485-687
               
               
               Cow position:chr7:30302053-30302253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):45, 21

               
               
               Conread position:511-710
               
               
               Cow position:chr7:1042267-1042074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):68, 17

               
               
               Conread position:514-798
               
               
               Cow position:chr7:20515739-20515454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:526-801
               
               
               Cow position:chr7:60857171-60856910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):53, 22

               
               
               Conread position:527-801
               
               
               Cow position:chr7:52804667-52804397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 13

               
               
               Conread position:534-801
               
               
               Cow position:chr7:29470177-29470442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 11

               
               
               Conread position:535-798
               
               
               Cow position:chr7:5183459-5183723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:536-778
               
               
               Cow position:chr7:62679616-62679375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:179
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):25, 200

               
               
               Conread position:540-794
               
               
               Cow position:chr7:60463208-60463463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:557-798
               
               
               Cow position:chr7:63550614-63550385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:187
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):22, 93

               
               
               Conread position:561-798
               
               
               Cow position:chr7:43830945-43830707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:578-797
               
               
               Cow position:chr7:68232038-68232258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):216, 0

               
               
               Conread position:580-801
               
               
               Cow position:chr7:24934864-24934646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:584-801
               
               
               Cow position:chr7:49290764-49290982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 213

               
               
               Conread position:597-801
               
               
               Cow position:chr7:41487671-41487878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):154, 0

               
               
               Conread position:608-801
               
               
               Cow position:chr7:20820412-20820604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:629-801
               
               
               Cow position:chr7:53990901-53991073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:143
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:653-798
               
               
               Cow position:chr7:21929317-21929460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:659-796
               
               
               Cow position:chr7:27147429-27147565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:666-801
               
               
               Cow position:chr7:54196071-54195936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-618
               
               
               Cow position:chr8:44077303-44076718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):234, 77

               
               
               Conread position:1-801
               
               
               Cow position:chr8:45188807-45189592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:806
               
               
               Alignm identity:572
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 82

               
               
               Conread position:2-262
               
               
               Cow position:chr8:24421062-24420818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:2-289
               
               
               Cow position:chr8:42161930-42161660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):15, 28

               
               
               Conread position:2-696
               
               
               Cow position:chr8:53427050-53427724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:698
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 52

               
               
               Conread position:2-754
               
               
               Cow position:chr8:11800956-11801695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:758
               
               
               Alignm identity:536
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):575, 35

               
               
               Conread position:2-771
               
               
               Cow position:chr8:9540780-9540018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:774
               
               
               Alignm identity:569
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 256

               
               
               Conread position:2-797
               
               
               Cow position:chr8:50289461-50288646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:820
               
               
               Alignm identity:593
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 251

               
               
               Conread position:2-798
               
               
               Cow position:chr8:1154581-1153802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:799
               
               
               Alignm identity:582
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):346, 51

               
               
               Conread position:2-798
               
               
               Cow position:chr8:2171675-2170874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:805
               
               
               Alignm identity:578
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 17

               
               
               Conread position:2-801
               
               
               Cow position:chr8:45161640-45160866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:804
               
               
               Alignm identity:569
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 9

               
               
               Conread position:2-804
               
               
               Cow position:chr8:11970848-11970080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:809
               
               
               Alignm identity:589
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 19

               
               
               Conread position:2-804
               
               
               Cow position:chr8:38607805-38607012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:826
               
               
               Alignm identity:576
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 29

               
               
               Conread position:3-449
               
               
               Cow position:chr8:39160030-39160474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:276
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):46, 12

               
               
               Conread position:3-559
               
               
               Cow position:chr8:42542895-42542335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:359
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):31, 98

               
               
               Conread position:4-789
               
               
               Cow position:chr8:33429640-33430421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:810
               
               
               Alignm identity:580
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):334, 86

               
               
               Conread position:4-798
               
               
               Cow position:chr8:8402487-8401713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:799
               
               
               Alignm identity:551
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 38

               
               
               Conread position:5-319
               
               
               Cow position:chr8:25777161-25776848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:213
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):219, 206

               
               
               Conread position:5-466
               
               
               Cow position:chr8:60059915-60060377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 39

               
               
               Conread position:5-469
               
               
               Cow position:chr8:42467118-42467555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:306
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):210, 52

               
               
               Conread position:5-774
               
               
               Cow position:chr8:27984088-27983316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:776
               
               
               Alignm identity:584
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 473

               
               
               Conread position:5-777
               
               
               Cow position:chr8:25522113-25522885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:567
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 78

               
               
               Conread position:5-793
               
               
               Cow position:chr8:50993509-50994288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:790
               
               
               Alignm identity:559
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):569, 45

               
               
               Conread position:5-797
               
               
               Cow position:chr8:3857300-3856511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:797
               
               
               Alignm identity:576
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 262

               
               
               Conread position:12-797
               
               
               Cow position:chr8:23770362-23771140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:789
               
               
               Alignm identity:570
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 14

               
               
               Conread position:17-798
               
               
               Cow position:chr8:8518848-8518078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:783
               
               
               Alignm identity:571
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):561, 194

               
               
               Conread position:21-380
               
               
               Cow position:chr8:6065987-6065635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 0

               
               
               Conread position:21-464
               
               
               Cow position:chr8:26007033-26006595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 0

               
               
               Conread position:21-730
               
               
               Cow position:chr8:25407196-25407882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:711
               
               
               Alignm identity:517
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):556, 62

               
               
               Conread position:21-797
               
               
               Cow position:chr8:19050216-19050981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:781
               
               
               Alignm identity:558
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):310, 326

               
               
               Conread position:22-237
               
               
               Cow position:chr8:29581785-29582002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):189, 0

               
               
               Conread position:22-466
               
               
               Cow position:chr8:32439711-32439270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 0

               
               
               Conread position:22-532
               
               
               Cow position:chr8:46945398-46944891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 237

               
               
               Conread position:22-552
               
               
               Cow position:chr8:12504732-12505253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:22-790
               
               
               Cow position:chr8:8557399-8556651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:770
               
               
               Alignm identity:558
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):557, 189

               
               
               Conread position:22-797
               
               
               Cow position:chr8:47070078-47069300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:781
               
               
               Alignm identity:569
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 61

               
               
               Conread position:22-798
               
               
               Cow position:chr8:1318770-1319550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:788
               
               
               Alignm identity:576
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 332

               
               
               Conread position:22-798
               
               
               Cow position:chr8:2885482-2886256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:788
               
               
               Alignm identity:573
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):469, 184

               
               
               Conread position:22-798
               
               
               Cow position:chr8:8656485-8655713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:780
               
               
               Alignm identity:575
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 196

               
               
               Conread position:22-798
               
               
               Cow position:chr8:9274751-9275516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:780
               
               
               Alignm identity:571
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 206

               
               
               Conread position:22-798
               
               
               Cow position:chr8:9734980-9735752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:574
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):556, 61

               
               
               Conread position:22-798
               
               
               Cow position:chr8:10748115-10748880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:567
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):557, 190

               
               
               Conread position:22-798
               
               
               Cow position:chr8:22572564-22571790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:780
               
               
               Alignm identity:567
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):220, 70

               
               
               Conread position:22-798
               
               
               Cow position:chr8:47074001-47074773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:780
               
               
               Alignm identity:556
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 46

               
               
               Conread position:23-417
               
               
               Cow position:chr8:61198384-61197991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 30

               
               
               Conread position:23-507
               
               
               Cow position:chr8:29441096-29440612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):461, 417

               
               
               Conread position:23-533
               
               
               Cow position:chr8:45796011-45795505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 0

               
               
               Conread position:23-762
               
               
               Cow position:chr8:8909968-8910690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:743
               
               
               Alignm identity:541
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):500, 18

               
               
               Conread position:23-771
               
               
               Cow position:chr8:47884763-47885507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:758
               
               
               Alignm identity:545
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 7

               
               
               Conread position:23-793
               
               
               Cow position:chr8:47662594-47661825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:773
               
               
               Alignm identity:570
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):554, 45

               
               
               Conread position:23-797
               
               
               Cow position:chr8:32319816-32319044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:554
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):367, 450

               
               
               Conread position:23-797
               
               
               Cow position:chr8:59263161-59262388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:777
               
               
               Alignm identity:559
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):556, 45

               
               
               Conread position:23-798
               
               
               Cow position:chr8:33588109-33588879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:556
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 35

               
               
               Conread position:23-799
               
               
               Cow position:chr8:46633663-46632891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:797
               
               
               Alignm identity:537
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 10

               
               
               Conread position:23-803
               
               
               Cow position:chr8:24916597-24915825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:785
               
               
               Alignm identity:581
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):516, 83

               
               
               Conread position:26-797
               
               
               Cow position:chr8:46222579-46221828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:515
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 38

               
               
               Conread position:26-801
               
               
               Cow position:chr8:11055627-11056374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:786
               
               
               Alignm identity:524
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 7

               
               
               Conread position:29-421
               
               
               Cow position:chr8:37657523-37657142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 0

               
               
               Conread position:30-209
               
               
               Cow position:chr8:14929288-14929111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:30-797
               
               
               Cow position:chr8:49214168-49214932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:770
               
               
               Alignm identity:566
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):549, 11

               
               
               Conread position:30-798
               
               
               Cow position:chr8:27578148-27578907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:770
               
               
               Alignm identity:563
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 216

               
               
               Conread position:37-351
               
               
               Cow position:chr8:46458981-46458675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):11, 41

               
               
               Conread position:37-447
               
               
               Cow position:chr8:19174020-19173615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:37-801
               
               
               Cow position:chr8:17310770-17311526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:768
               
               
               Alignm identity:548
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 70

               
               
               Conread position:38-265
               
               
               Cow position:chr8:38087872-38088098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):14, 76

               
               
               Conread position:38-270
               
               
               Cow position:chr8:3784327-3784558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):155, 167

               
               
               Conread position:38-536
               
               
               Cow position:chr8:19328701-19329198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):434, 0

               
               
               Conread position:38-737
               
               
               Cow position:chr8:36637911-36637214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:702
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 166

               
               
               Conread position:38-797
               
               
               Cow position:chr8:36636796-36636039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:763
               
               
               Alignm identity:559
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 166

               
               
               Conread position:38-804
               
               
               Cow position:chr8:4686141-4686903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:768
               
               
               Alignm identity:560
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):541, 309

               
               
               Conread position:41-714
               
               
               Cow position:chr8:8316876-8316221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:676
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):201, 57

               
               
               Conread position:41-777
               
               
               Cow position:chr8:38390121-38390852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:545
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):538, 65

               
               
               Conread position:41-797
               
               
               Cow position:chr8:44244822-44244068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:762
               
               
               Alignm identity:570
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 57

               
               
               Conread position:46-798
               
               
               Cow position:chr8:8230030-8229276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:756
               
               
               Alignm identity:551
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):291, 429

               
               
               Conread position:51-495
               
               
               Cow position:chr8:44121616-44122080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 158

               
               
               Conread position:52-801
               
               
               Cow position:chr8:9136145-9135398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:774
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 276

               
               
               Conread position:55-329
               
               
               Cow position:chr8:13808090-13808359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):28, 19

               
               
               Conread position:67-460
               
               
               Cow position:chr8:9264495-9264117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:256
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):61, 79

               
               
               Conread position:67-512
               
               
               Cow position:chr8:8904718-8904306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:303
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):439, 18

               
               
               Conread position:67-513
               
               
               Cow position:chr8:11757497-11757923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 0

               
               
               Conread position:67-535
               
               
               Cow position:chr8:12664248-12663777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 170

               
               
               Conread position:68-537
               
               
               Cow position:chr8:44713534-44713059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:316
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):131, 137

               
               
               Conread position:69-703
               
               
               Cow position:chr8:13735430-13736055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:637
               
               
               Alignm identity:459
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):336, 272

               
               
               Conread position:70-331
               
               
               Cow position:chr8:25542376-25542634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:185
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):160, 0

               
               
               Conread position:70-389
               
               
               Cow position:chr8:42658682-42658366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):144, 154

               
               
               Conread position:72-803
               
               
               Cow position:chr8:45448229-45448966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:750
               
               
               Alignm identity:537
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 115

               
               
               Conread position:74-798
               
               
               Cow position:chr8:11821096-11821817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:735
               
               
               Alignm identity:523
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 357

               
               
               Conread position:74-804
               
               
               Cow position:chr8:44693090-44693796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:734
               
               
               Alignm identity:529
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):423, 25

               
               
               Conread position:78-798
               
               
               Cow position:chr8:32632226-32631522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:541
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):501, 12

               
               
               Conread position:82-797
               
               
               Cow position:chr8:10743827-10743125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:720
               
               
               Alignm identity:523
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 20

               
               
               Conread position:95-798
               
               
               Cow position:chr8:44036958-44036273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:713
               
               
               Alignm identity:511
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 12

               
               
               Conread position:97-357
               
               
               Cow position:chr8:8596089-8595829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 129

               
               
               Conread position:97-384
               
               
               Cow position:chr8:27924928-27925215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 6

               
               
               Conread position:97-798
               
               
               Cow position:chr8:45317315-45316620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:706
               
               
               Alignm identity:536
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):376, 28

               
               
               Conread position:99-798
               
               
               Cow position:chr8:47670265-47670955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):241, 151

               
               
               Conread position:101-801
               
               
               Cow position:chr8:21240035-21240686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:704
               
               
               Alignm identity:431
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):165, 42

               
               
               Conread position:102-647
               
               
               Cow position:chr8:8321763-8321240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:547
               
               
               Alignm identity:348
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):475, 31

               
               
               Conread position:105-451
               
               
               Cow position:chr8:41739370-41739705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):285, 108

               
               
               Conread position:105-797
               
               
               Cow position:chr8:57184845-57184170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:705
               
               
               Alignm identity:425
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):24, 64

               
               
               Conread position:108-798
               
               
               Cow position:chr8:32930321-32931015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:704
               
               
               Alignm identity:534
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 183

               
               
               Conread position:112-771
               
               
               Cow position:chr8:27377974-27378632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:678
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 33

               
               
               Conread position:123-704
               
               
               Cow position:chr8:31215469-31214903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:365
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):51, 75

               
               
               Conread position:132-798
               
               
               Cow position:chr8:23216595-23217265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:688
               
               
               Alignm identity:513
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):323, 164

               
               
               Conread position:152-797
               
               
               Cow position:chr8:39196356-39195712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:647
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):642, 321

               
               
               Conread position:153-801
               
               
               Cow position:chr8:61035492-61034858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:653
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):370, 62

               
               
               Conread position:168-666
               
               
               Cow position:chr8:42165333-42164864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:317
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):246, 9

               
               
               Conread position:169-745
               
               
               Cow position:chr8:46091982-46091417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:578
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):408, 154

               
               
               Conread position:218-789
               
               
               Cow position:chr8:15688225-15687663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:578
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 88

               
               
               Conread position:219-720
               
               
               Cow position:chr8:37501243-37501723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:312
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):110, 39

               
               
               Conread position:220-779
               
               
               Cow position:chr8:45402733-45403273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:562
               
               
               Alignm identity:349
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):181, 7

               
               
               Conread position:221-466
               
               
               Cow position:chr8:14592258-14592021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:221-797
               
               
               Cow position:chr8:14929063-14928488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:413
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 70

               
               
               Conread position:221-797
               
               
               Cow position:chr8:42483856-42484417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 252

               
               
               Conread position:221-801
               
               
               Cow position:chr8:23766458-23765899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:584
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 33

               
               
               Conread position:225-797
               
               
               Cow position:chr8:46149053-46148510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:574
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):353, 93

               
               
               Conread position:229-803
               
               
               Cow position:chr8:5016118-5016693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:444
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 229

               
               
               Conread position:231-756
               
               
               Cow position:chr8:24876761-24876258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:529
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 22

               
               
               Conread position:237-798
               
               
               Cow position:chr8:13500921-13501466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:348
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):156, 104

               
               
               Conread position:267-804
               
               
               Cow position:chr8:12544035-12543548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:540
               
               
               Alignm identity:382
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 79

               
               
               Conread position:268-622
               
               
               Cow position:chr8:30490761-30490411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 162

               
               
               Conread position:275-797
               
               
               Cow position:chr8:3784693-3785215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):304, 87

               
               
               Conread position:280-520
               
               
               Cow position:chr8:36292158-36292395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 0

               
               
               Conread position:301-648
               
               
               Cow position:chr8:36918869-36919221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):97, 33

               
               
               Conread position:305-801
               
               
               Cow position:chr8:24420514-24420030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 107

               
               
               Conread position:307-536
               
               
               Cow position:chr8:42812228-42812451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):7, 26

               
               
               Conread position:310-487
               
               
               Cow position:chr8:61100518-61100339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):37, 131

               
               
               Conread position:318-799
               
               
               Cow position:chr8:13808628-13809102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 31

               
               
               Conread position:319-616
               
               
               Cow position:chr8:29581968-29582268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):220, 153

               
               
               Conread position:321-800
               
               
               Cow position:chr8:50934152-50934608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):256, 8

               
               
               Conread position:322-798
               
               
               Cow position:chr8:25776635-25776168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):257, 112

               
               
               Conread position:325-560
               
               
               Cow position:chr8:51668227-51668002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):80, 86

               
               
               Conread position:325-797
               
               
               Cow position:chr8:11831730-11832205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):254, 148

               
               
               Conread position:341-799
               
               
               Cow position:chr8:42161673-42161230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 133

               
               
               Conread position:346-801
               
               
               Cow position:chr8:45693572-45693118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):236, 83

               
               
               Conread position:350-801
               
               
               Cow position:chr8:11761360-11761787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):229, 60

               
               
               Conread position:352-764
               
               
               Cow position:chr8:61067180-61066775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):227, 122

               
               
               Conread position:354-793
               
               
               Cow position:chr8:42759025-42759444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 116

               
               
               Conread position:362-798
               
               
               Cow position:chr8:1349175-1348730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 111

               
               
               Conread position:380-794
               
               
               Cow position:chr8:27925414-27925816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):199, 48

               
               
               Conread position:417-801
               
               
               Cow position:chr8:47491697-47491325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 56

               
               
               Conread position:424-798
               
               
               Cow position:chr8:6065637-6065263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 49

               
               
               Conread position:443-730
               
               
               Cow position:chr8:11789731-11790030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):112, 30

               
               
               Conread position:445-799
               
               
               Cow position:chr8:21158664-21158312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 28

               
               
               Conread position:458-796
               
               
               Cow position:chr8:51327736-51328078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:232
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):131, 20

               
               
               Conread position:458-797
               
               
               Cow position:chr8:14591746-14591397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 15

               
               
               Conread position:458-797
               
               
               Cow position:chr8:60060547-60060885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 15

               
               
               Conread position:465-798
               
               
               Cow position:chr8:26005426-26005091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 8

               
               
               Conread position:479-801
               
               
               Cow position:chr8:25542687-25543008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 266

               
               
               Conread position:491-788
               
               
               Cow position:chr8:11774115-11774405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 24

               
               
               Conread position:493-753
               
               
               Cow position:chr8:38578736-38578475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):37, 57

               
               
               Conread position:498-801
               
               
               Cow position:chr8:44665649-44665351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:217
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):12, 31

               
               
               Conread position:504-670
               
               
               Cow position:chr8:9264038-9263870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):75, 62

               
               
               Conread position:505-708
               
               
               Cow position:chr8:3300663-3300459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):73, 190

               
               
               Conread position:524-798
               
               
               Cow position:chr8:46944688-46944414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 20

               
               
               Conread position:524-799
               
               
               Cow position:chr8:42467555-42467830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 228

               
               
               Conread position:530-797
               
               
               Cow position:chr8:19329972-19330241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:534-801
               
               
               Cow position:chr8:12449188-12449456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:541-792
               
               
               Cow position:chr8:8533376-8533128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):38, 24

               
               
               Conread position:549-801
               
               
               Cow position:chr8:20276679-20276924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):30, 49

               
               
               Conread position:584-797
               
               
               Cow position:chr8:48784485-48784701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):16, 45

               
               
               Conread position:588-797
               
               
               Cow position:chr8:51668002-51667790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:589-798
               
               
               Cow position:chr8:34347975-34348183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:608-801
               
               
               Cow position:chr8:19188148-19188346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):17, 176

               
               
               Conread position:614-801
               
               
               Cow position:chr8:16083649-16083835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:150
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:634-794
               
               
               Cow position:chr8:46600635-46600795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:635-801
               
               
               Cow position:chr8:47672813-47672979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:138
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:638-800
               
               
               Cow position:chr8:30488157-30487996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:646-794
               
               
               Cow position:chr8:42420212-42420063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:650-756
               
               
               Cow position:chr8:58187142-58187036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:86
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:653-798
               
               
               Cow position:chr8:45797955-45797810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:658-804
               
               
               Cow position:chr8:44076522-44076375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:660-776
               
               
               Cow position:chr8:7160871-7160987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:698-798
               
               
               Cow position:chr8:6683852-6683952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:86
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-630
               
               
               Cow position:chr9:832060-831444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:452
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 25

               
               
               Conread position:1-749
               
               
               Cow position:chr9:1252610-1251867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:758
               
               
               Alignm identity:542
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 56

               
               
               Conread position:2-591
               
               
               Cow position:chr9:20310344-20309788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 59

               
               
               Conread position:2-739
               
               
               Cow position:chr9:223181-222449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:753
               
               
               Alignm identity:528
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 23

               
               
               Conread position:2-797
               
               
               Cow position:chr9:16175139-16175924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:798
               
               
               Alignm identity:579
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):577, 34

               
               
               Conread position:2-799
               
               
               Cow position:chr9:39992309-39993072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:805
               
               
               Alignm identity:542
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 14

               
               
               Conread position:5-784
               
               
               Cow position:chr9:47001578-47002332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:782
               
               
               Alignm identity:559
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):340, 101

               
               
               Conread position:5-797
               
               
               Cow position:chr9:31806905-31807690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:795
               
               
               Alignm identity:577
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):572, 318

               
               
               Conread position:5-798
               
               
               Cow position:chr9:1996547-1995757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:802
               
               
               Alignm identity:578
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):340, 58

               
               
               Conread position:5-798
               
               
               Cow position:chr9:30671736-30672525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:796
               
               
               Alignm identity:576
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):352, 94

               
               
               Conread position:5-801
               
               
               Cow position:chr9:5003378-5004161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:804
               
               
               Alignm identity:573
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 27

               
               
               Conread position:5-801
               
               
               Cow position:chr9:6756942-6757725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:806
               
               
               Alignm identity:548
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 32

               
               
               Conread position:12-612
               
               
               Cow position:chr9:7001928-7002524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):565, 14

               
               
               Conread position:12-777
               
               
               Cow position:chr9:27034084-27034836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:767
               
               
               Alignm identity:561
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):567, 14

               
               
               Conread position:19-411
               
               
               Cow position:chr9:18510346-18509953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:19-709
               
               
               Cow position:chr9:29028849-29028158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:694
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):558, 14

               
               
               Conread position:20-554
               
               
               Cow position:chr9:54359999-54360514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 10

               
               
               Conread position:21-793
               
               
               Cow position:chr9:37971826-37971058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:774
               
               
               Alignm identity:564
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):556, 451

               
               
               Conread position:21-797
               
               
               Cow position:chr9:2170439-2171214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:781
               
               
               Alignm identity:561
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):474, 256

               
               
               Conread position:22-368
               
               
               Cow position:chr9:3006890-3006547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:232
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):77, 83

               
               
               Conread position:22-378
               
               
               Cow position:chr9:33834889-33834535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 69

               
               
               Conread position:22-379
               
               
               Cow position:chr9:50788952-50789305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 190

               
               
               Conread position:22-699
               
               
               Cow position:chr9:46626415-46625741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:679
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):555, 77

               
               
               Conread position:22-734
               
               
               Cow position:chr9:4671991-4672700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:714
               
               
               Alignm identity:519
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):555, 69

               
               
               Conread position:22-798
               
               
               Cow position:chr9:781417-780647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:779
               
               
               Alignm identity:564
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):493, 69

               
               
               Conread position:22-798
               
               
               Cow position:chr9:1076815-1076040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:779
               
               
               Alignm identity:572
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):555, 212

               
               
               Conread position:22-798
               
               
               Cow position:chr9:17065004-17064226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:792
               
               
               Alignm identity:558
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):557, 98

               
               
               Conread position:22-798
               
               
               Cow position:chr9:25483254-25484030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:779
               
               
               Alignm identity:571
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 451

               
               
               Conread position:22-798
               
               
               Cow position:chr9:25755824-25755066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:781
               
               
               Alignm identity:560
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 315

               
               
               Conread position:22-798
               
               
               Cow position:chr9:27933476-27934246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:779
               
               
               Alignm identity:568
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 183

               
               
               Conread position:22-798
               
               
               Cow position:chr9:31194785-31194009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:779
               
               
               Alignm identity:571
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):474, 450

               
               
               Conread position:22-798
               
               
               Cow position:chr9:34243216-34242440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:781
               
               
               Alignm identity:578
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 205

               
               
               Conread position:22-798
               
               
               Cow position:chr9:45872734-45873506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:781
               
               
               Alignm identity:567
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 130

               
               
               Conread position:22-799
               
               
               Cow position:chr9:2500916-2500136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:784
               
               
               Alignm identity:566
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 240

               
               
               Conread position:22-801
               
               
               Cow position:chr9:64118245-64118978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:786
               
               
               Alignm identity:550
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 33

               
               
               Conread position:23-292
               
               
               Cow position:chr9:10855582-10855852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):75, 95

               
               
               Conread position:23-355
               
               
               Cow position:chr9:12401630-12401959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:225
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:23-508
               
               
               Cow position:chr9:51183325-51182835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 188

               
               
               Conread position:23-618
               
               
               Cow position:chr9:6831160-6830580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):212, 34

               
               
               Conread position:23-764
               
               
               Cow position:chr9:37163424-37162683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:744
               
               
               Alignm identity:538
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):535, 109

               
               
               Conread position:23-797
               
               
               Cow position:chr9:29629364-29628590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:777
               
               
               Alignm identity:561
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):556, 450

               
               
               Conread position:23-801
               
               
               Cow position:chr9:6051654-6050886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:784
               
               
               Alignm identity:560
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 152

               
               
               Conread position:23-801
               
               
               Cow position:chr9:9012491-9013268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:786
               
               
               Alignm identity:562
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 360

               
               
               Conread position:27-467
               
               
               Cow position:chr9:2488576-2488145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 0

               
               
               Conread position:29-797
               
               
               Cow position:chr9:16267750-16268528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:781
               
               
               Alignm identity:578
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 133

               
               
               Conread position:30-501
               
               
               Cow position:chr9:418136-417670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):426, 11

               
               
               Conread position:30-798
               
               
               Cow position:chr9:164100-163346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:772
               
               
               Alignm identity:563
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 206

               
               
               Conread position:33-798
               
               
               Cow position:chr9:2185350-2186123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:786
               
               
               Alignm identity:552
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 73

               
               
               Conread position:38-797
               
               
               Cow position:chr9:59174759-59174003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:765
               
               
               Alignm identity:565
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 112

               
               
               Conread position:38-798
               
               
               Cow position:chr9:42309080-42309840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:764
               
               
               Alignm identity:573
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 167

               
               
               Conread position:41-671
               
               
               Cow position:chr9:2199516-2200137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):536, 30

               
               
               Conread position:41-744
               
               
               Cow position:chr9:28020948-28021654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:709
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):307, 240

               
               
               Conread position:41-783
               
               
               Cow position:chr9:3548769-3548030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:554
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 140

               
               
               Conread position:41-797
               
               
               Cow position:chr9:42568274-42569028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:759
               
               
               Alignm identity:559
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):533, 288

               
               
               Conread position:41-797
               
               
               Cow position:chr9:59535506-59536252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:760
               
               
               Alignm identity:547
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):538, 58

               
               
               Conread position:42-790
               
               
               Cow position:chr9:59456197-59455449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:751
               
               
               Alignm identity:548
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):535, 431

               
               
               Conread position:44-797
               
               
               Cow position:chr9:59483260-59482515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:757
               
               
               Alignm identity:550
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):535, 96

               
               
               Conread position:55-798
               
               
               Cow position:chr9:28626611-28625884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:542
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):484, 10

               
               
               Conread position:56-797
               
               
               Cow position:chr9:10321237-10321965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:746
               
               
               Alignm identity:543
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 286

               
               
               Conread position:58-605
               
               
               Cow position:chr9:52290055-52290599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:561
               
               
               Alignm identity:359
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):39, 24

               
               
               Conread position:61-509
               
               
               Cow position:chr9:59510021-59510479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 155

               
               
               Conread position:67-549
               
               
               Cow position:chr9:9577033-9577510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:324
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):28, 64

               
               
               Conread position:67-694
               
               
               Cow position:chr9:3868072-3867462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):275, 65

               
               
               Conread position:67-751
               
               
               Cow position:chr9:2051887-2052558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:698
               
               
               Alignm identity:480
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):303, 151

               
               
               Conread position:67-771
               
               
               Cow position:chr9:52570106-52570780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:478
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 14

               
               
               Conread position:67-780
               
               
               Cow position:chr9:4984209-4984911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:723
               
               
               Alignm identity:522
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 24

               
               
               Conread position:68-801
               
               
               Cow position:chr9:3938359-3937665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:737
               
               
               Alignm identity:477
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 55

               
               
               Conread position:69-248
               
               
               Cow position:chr9:14961999-14961820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):142, 23

               
               
               Conread position:69-649
               
               
               Cow position:chr9:21009984-21009407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:597
               
               
               Alignm identity:368
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):15, 117

               
               
               Conread position:72-264
               
               
               Cow position:chr9:8969614-8969419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:72-337
               
               
               Cow position:chr9:651662-651390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):32, 66

               
               
               Conread position:72-513
               
               
               Cow position:chr9:1294385-1293944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 33

               
               
               Conread position:75-393
               
               
               Cow position:chr9:60652026-60651711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:224
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):61, 29

               
               
               Conread position:78-797
               
               
               Cow position:chr9:4531932-4532648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:726
               
               
               Alignm identity:524
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):254, 96

               
               
               Conread position:78-803
               
               
               Cow position:chr9:60278585-60277858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:548
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 133

               
               
               Conread position:85-400
               
               
               Cow position:chr9:31776391-31776707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):10, 152

               
               
               Conread position:93-798
               
               
               Cow position:chr9:31020259-31020979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:725
               
               
               Alignm identity:529
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 315

               
               
               Conread position:94-496
               
               
               Cow position:chr9:830098-829705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 82

               
               
               Conread position:97-357
               
               
               Cow position:chr9:3585760-3586019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):153, 0

               
               
               Conread position:99-803
               
               
               Cow position:chr9:3155502-3156185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:518
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 152

               
               
               Conread position:100-508
               
               
               Cow position:chr9:22702393-22701985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:269
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):114, 123

               
               
               Conread position:100-783
               
               
               Cow position:chr9:3567400-3566709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:694
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 378

               
               
               Conread position:102-798
               
               
               Cow position:chr9:37130080-37129388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:711
               
               
               Alignm identity:539
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 148

               
               
               Conread position:105-798
               
               
               Cow position:chr9:36723968-36724659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:697
               
               
               Alignm identity:531
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 106

               
               
               Conread position:110-777
               
               
               Cow position:chr9:793034-792377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:670
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):467, 62

               
               
               Conread position:110-789
               
               
               Cow position:chr9:9331247-9330580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:688
               
               
               Alignm identity:423
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):101, 55

               
               
               Conread position:110-798
               
               
               Cow position:chr9:28677445-28678130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:691
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):258, 135

               
               
               Conread position:110-798
               
               
               Cow position:chr9:59443325-59444007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:694
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 148

               
               
               Conread position:110-800
               
               
               Cow position:chr9:12846053-12845392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:705
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 49

               
               
               Conread position:113-461
               
               
               Cow position:chr9:18836260-18836599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:235
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):15, 7

               
               
               Conread position:114-646
               
               
               Cow position:chr9:23409699-23410210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:346
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):100, 61

               
               
               Conread position:116-749
               
               
               Cow position:chr9:55616829-55617438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:639
               
               
               Alignm identity:416
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 103

               
               
               Conread position:116-801
               
               
               Cow position:chr9:26002640-26001993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:692
               
               
               Alignm identity:440
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):13, 84

               
               
               Conread position:118-798
               
               
               Cow position:chr9:131724-131032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:701
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 14

               
               
               Conread position:118-798
               
               
               Cow position:chr9:10314859-10315524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:687
               
               
               Alignm identity:515
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 50

               
               
               Conread position:118-801
               
               
               Cow position:chr9:35657450-35658105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:686
               
               
               Alignm identity:452
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 9

               
               
               Conread position:119-554
               
               
               Cow position:chr9:22650633-22651057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 205

               
               
               Conread position:119-797
               
               
               Cow position:chr9:7062627-7061935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:694
               
               
               Alignm identity:498
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 367

               
               
               Conread position:119-801
               
               
               Cow position:chr9:15071994-15072674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:685
               
               
               Alignm identity:525
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 354

               
               
               Conread position:123-555
               
               
               Cow position:chr9:26712834-26712414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:287
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):118, 128

               
               
               Conread position:124-455
               
               
               Cow position:chr9:34107235-34106905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):91, 99

               
               
               Conread position:133-801
               
               
               Cow position:chr9:2801023-2800396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:673
               
               
               Alignm identity:432
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):136, 11

               
               
               Conread position:139-524
               
               
               Cow position:chr9:1979446-1979821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:149-496
               
               
               Cow position:chr9:32968249-32968596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 200

               
               
               Conread position:164-485
               
               
               Cow position:chr9:2065685-2065368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):78, 92

               
               
               Conread position:168-801
               
               
               Cow position:chr9:3024641-3025264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:647
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):260, 74

               
               
               Conread position:171-801
               
               
               Cow position:chr9:64158660-64159278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:639
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 40

               
               
               Conread position:191-571
               
               
               Cow position:chr9:13219872-13220247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 5

               
               
               Conread position:191-801
               
               
               Cow position:chr9:3725830-3726441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:621
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 29

               
               
               Conread position:209-705
               
               
               Cow position:chr9:2202781-2203270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 41

               
               
               Conread position:220-531
               
               
               Cow position:chr9:2697355-2697042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:219
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):41, 256

               
               
               Conread position:222-623
               
               
               Cow position:chr9:870449-870064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:268
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):78, 31

               
               
               Conread position:231-728
               
               
               Cow position:chr9:43215410-43214914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:298
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):309, 154

               
               
               Conread position:234-797
               
               
               Cow position:chr9:5424585-5424028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:398
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 59

               
               
               Conread position:266-595
               
               
               Cow position:chr9:8969297-8968968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 61

               
               
               Conread position:266-798
               
               
               Cow position:chr9:25023675-25023144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:534
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):313, 51

               
               
               Conread position:267-801
               
               
               Cow position:chr9:3356345-3355832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:537
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):312, 39

               
               
               Conread position:277-798
               
               
               Cow position:chr9:9055429-9054908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):302, 196

               
               
               Conread position:295-797
               
               
               Cow position:chr9:6111319-6110842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:366
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 42

               
               
               Conread position:310-783
               
               
               Cow position:chr9:3542480-3542950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:476
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 163

               
               
               Conread position:318-803
               
               
               Cow position:chr9:20024996-20025475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:313
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):95, 13

               
               
               Conread position:332-801
               
               
               Cow position:chr9:29328004-29328443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:314
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):96, 23

               
               
               Conread position:336-677
               
               
               Cow position:chr9:59425381-59425712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):168, 92

               
               
               Conread position:336-798
               
               
               Cow position:chr9:37064100-37063646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 138

               
               
               Conread position:347-798
               
               
               Cow position:chr9:30826388-30826839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):232, 126

               
               
               Conread position:348-801
               
               
               Cow position:chr9:3006537-3006085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):231, 19

               
               
               Conread position:360-798
               
               
               Cow position:chr9:3586075-3586525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 362

               
               
               Conread position:367-801
               
               
               Cow position:chr9:34992110-34992553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 61

               
               
               Conread position:373-758
               
               
               Cow position:chr9:4280195-4280573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 85

               
               
               Conread position:381-797
               
               
               Cow position:chr9:50789418-50789834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):198, 92

               
               
               Conread position:394-801
               
               
               Cow position:chr9:37094930-37095355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:277
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):88, 80

               
               
               Conread position:395-801
               
               
               Cow position:chr9:13477456-13477062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 81

               
               
               Conread position:413-801
               
               
               Cow position:chr9:3578698-3578341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:265
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):161, 60

               
               
               Conread position:438-737
               
               
               Cow position:chr9:2001605-2001312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 35

               
               
               Conread position:454-801
               
               
               Cow position:chr9:18836823-18837171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 19

               
               
               Conread position:464-754
               
               
               Cow position:chr9:7013864-7014164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):114, 10

               
               
               Conread position:464-786
               
               
               Cow position:chr9:35317754-35317432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:217
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):113, 9

               
               
               Conread position:465-804
               
               
               Cow position:chr9:6973951-6974292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 14

               
               
               Conread position:469-801
               
               
               Cow position:chr9:51182368-51182034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:472-801
               
               
               Cow position:chr9:59510622-59510951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):5, 16

               
               
               Conread position:483-648
               
               
               Cow position:chr9:2064834-2064669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):97, 40

               
               
               Conread position:483-777
               
               
               Cow position:chr9:7012176-7012456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:489-797
               
               
               Cow position:chr9:32968815-32969124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 229

               
               
               Conread position:492-630
               
               
               Cow position:chr9:829372-829233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:497-804
               
               
               Cow position:chr9:1979832-1980142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:504-733
               
               
               Cow position:chr9:22410250-22410023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):76, 32

               
               
               Conread position:512-783
               
               
               Cow position:chr9:43662830-43663087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:206
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):67, 148

               
               
               Conread position:512-801
               
               
               Cow position:chr9:1635422-1635701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):27, 103

               
               
               Conread position:519-798
               
               
               Cow position:chr9:3394107-3393832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:201
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):60, 175

               
               
               Conread position:530-720
               
               
               Cow position:chr9:34719858-34720052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:155
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:532-798
               
               
               Cow position:chr9:40191785-40191519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 8

               
               
               Conread position:542-803
               
               
               Cow position:chr9:26710581-26710330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):41, 62

               
               
               Conread position:546-791
               
               
               Cow position:chr9:2475193-2475434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):33, 94

               
               
               Conread position:550-759
               
               
               Cow position:chr9:18067311-18067101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:171
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:550-798
               
               
               Cow position:chr9:54361344-54361588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 130

               
               
               Conread position:555-801
               
               
               Cow position:chr9:64018545-64018299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 10

               
               
               Conread position:560-804
               
               
               Cow position:chr9:15683855-15684092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):19, 10

               
               
               Conread position:580-801
               
               
               Cow position:chr9:39040514-39040726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):37, 17

               
               
               Conread position:596-790
               
               
               Cow position:chr9:22653521-22653715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:157
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:596-801
               
               
               Cow position:chr9:44817814-44818019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:599-798
               
               
               Cow position:chr9:49177869-49177670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:164
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:604-801
               
               
               Cow position:chr9:20309568-20309371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:160
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:614-797
               
               
               Cow position:chr9:6830527-6830352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):180, 118

               
               
               Conread position:616-798
               
               
               Cow position:chr9:31064408-31064590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:148
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:622-798
               
               
               Cow position:chr9:8968968-8968800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:625-798
               
               
               Cow position:chr9:2488147-2487973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:141
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:629-801
               
               
               Cow position:chr9:21381919-21381751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):24, 78

               
               
               Conread position:638-801
               
               
               Cow position:chr9:18509806-18509643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:639-783
               
               
               Cow position:chr9:7002519-7002664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:641-798
               
               
               Cow position:chr9:60651712-60651555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:91
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:666-800
               
               
               Cow position:chr9:3803067-3803201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-708
               
               
               Cow position:chrX:11669156-11668469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:712
               
               
               Alignm identity:519
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):240, 82

               
               
               Conread position:1-798
               
               
               Cow position:chrX:1833121-1833892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:803
               
               
               Alignm identity:584
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 40

               
               
               Conread position:1-798
               
               
               Cow position:chrX:21305268-21304463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:818
               
               
               Alignm identity:556
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 44

               
               
               Conread position:1-801
               
               
               Cow position:chrX:24122638-24121854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:802
               
               
               Alignm identity:609
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):577, 74

               
               
               Conread position:2-251
               
               
               Cow position:chrX:28553297-28553540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:2-270
               
               
               Cow position:chrX:35019932-35020185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):116, 97

               
               
               Conread position:2-298
               
               
               Cow position:chrX:9901331-9901033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):39, 157

               
               
               Conread position:2-331
               
               
               Cow position:chrX:29284010-29284333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 80

               
               
               Conread position:2-535
               
               
               Cow position:chrX:30055938-30056466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:541
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 34

               
               
               Conread position:2-742
               
               
               Cow position:chrX:16017855-16017136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:749
               
               
               Alignm identity:515
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 18

               
               
               Conread position:2-776
               
               
               Cow position:chrX:13413842-13413075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:776
               
               
               Alignm identity:558
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):577, 45

               
               
               Conread position:2-791
               
               
               Cow position:chrX:28549179-28549921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:797
               
               
               Alignm identity:541
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 15

               
               
               Conread position:2-793
               
               
               Cow position:chrX:26767917-26767140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:793
               
               
               Alignm identity:562
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):577, 45

               
               
               Conread position:2-798
               
               
               Cow position:chrX:5299922-5299160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:799
               
               
               Alignm identity:552
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):228, 35

               
               
               Conread position:2-798
               
               
               Cow position:chrX:14787607-14786809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:810
               
               
               Alignm identity:585
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 48

               
               
               Conread position:2-798
               
               
               Cow position:chrX:22813671-22814446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:802
               
               
               Alignm identity:572
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 45

               
               
               Conread position:2-798
               
               
               Cow position:chrX:29794828-29794053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:814
               
               
               Alignm identity:568
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 29

               
               
               Conread position:2-801
               
               
               Cow position:chrX:18532275-18533055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:806
               
               
               Alignm identity:565
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 52

               
               
               Conread position:2-803
               
               
               Cow position:chrX:15127974-15127172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:807
               
               
               Alignm identity:582
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 18

               
               
               Conread position:5-371
               
               
               Cow position:chrX:12672268-12671908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:242
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):9, 89

               
               
               Conread position:5-797
               
               
               Cow position:chrX:22487465-22488244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:796
               
               
               Alignm identity:578
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):196, 78

               
               
               Conread position:5-797
               
               
               Cow position:chrX:30710627-30711412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:798
               
               
               Alignm identity:576
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 78

               
               
               Conread position:8-732
               
               
               Cow position:chrX:21489512-21490226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:531
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 8

               
               
               Conread position:11-777
               
               
               Cow position:chrX:29882962-29882188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:788
               
               
               Alignm identity:505
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 44

               
               
               Conread position:12-447
               
               
               Cow position:chrX:24541861-24541437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:274
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):148, 28

               
               
               Conread position:12-762
               
               
               Cow position:chrX:2787935-2787203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:766
               
               
               Alignm identity:508
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 5

               
               
               Conread position:12-798
               
               
               Cow position:chrX:32466530-32467315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:791
               
               
               Alignm identity:575
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 31

               
               
               Conread position:13-247
               
               
               Cow position:chrX:22583644-22583407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:13-436
               
               
               Cow position:chrX:12182483-12182901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 111

               
               
               Conread position:19-790
               
               
               Cow position:chrX:2483351-2482583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:774
               
               
               Alignm identity:562
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):331, 113

               
               
               Conread position:21-408
               
               
               Cow position:chrX:5337293-5336896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:21-476
               
               
               Cow position:chrX:28522412-28521957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 227

               
               
               Conread position:21-801
               
               
               Cow position:chrX:5284439-5283669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:782
               
               
               Alignm identity:567
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):558, 190

               
               
               Conread position:21-801
               
               
               Cow position:chrX:31192472-31191744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:785
               
               
               Alignm identity:523
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 20

               
               
               Conread position:22-255
               
               
               Cow position:chrX:978909-979142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):189, 198

               
               
               Conread position:22-286
               
               
               Cow position:chrX:14051369-14051631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):193, 69

               
               
               Conread position:22-300
               
               
               Cow position:chrX:28562966-28562686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):189, 258

               
               
               Conread position:22-326
               
               
               Cow position:chrX:12704625-12704320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):189, 225

               
               
               Conread position:22-388
               
               
               Cow position:chrX:3376931-3376570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:22-396
               
               
               Cow position:chrX:29174309-29173939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 189

               
               
               Conread position:22-408
               
               
               Cow position:chrX:9173076-9172692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 126

               
               
               Conread position:22-432
               
               
               Cow position:chrX:21586318-21586732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 238

               
               
               Conread position:22-480
               
               
               Cow position:chrX:22610598-22611053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):286, 0

               
               
               Conread position:22-495
               
               
               Cow position:chrX:24139688-24139233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:294
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):26, 47

               
               
               Conread position:22-557
               
               
               Cow position:chrX:24325856-24325323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:537
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):511, 69

               
               
               Conread position:22-583
               
               
               Cow position:chrX:8963764-8963213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:565
               
               
               Alignm identity:390
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 192

               
               
               Conread position:22-585
               
               
               Cow position:chrX:3422152-3421591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 225

               
               
               Conread position:22-609
               
               
               Cow position:chrX:24380595-24381184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:592
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 208

               
               
               Conread position:22-613
               
               
               Cow position:chrX:12341483-12342071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:595
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 386

               
               
               Conread position:22-694
               
               
               Cow position:chrX:16236616-16237268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:677
               
               
               Alignm identity:476
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):250, 116

               
               
               Conread position:22-695
               
               
               Cow position:chrX:31079816-31080478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:684
               
               
               Alignm identity:462
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 19

               
               
               Conread position:22-717
               
               
               Cow position:chrX:3085611-3084920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:702
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 155

               
               
               Conread position:22-759
               
               
               Cow position:chrX:2860508-2859777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:741
               
               
               Alignm identity:542
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):220, 80

               
               
               Conread position:22-759
               
               
               Cow position:chrX:5395675-5394938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:740
               
               
               Alignm identity:540
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):506, 390

               
               
               Conread position:22-797
               
               
               Cow position:chrX:12804564-12803801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:779
               
               
               Alignm identity:571
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 84

               
               
               Conread position:22-798
               
               
               Cow position:chrX:2603338-2604111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:781
               
               
               Alignm identity:583
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 69

               
               
               Conread position:22-798
               
               
               Cow position:chrX:5862685-5863461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:780
               
               
               Alignm identity:570
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 214

               
               
               Conread position:22-798
               
               
               Cow position:chrX:6873789-6873010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:786
               
               
               Alignm identity:561
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 249

               
               
               Conread position:22-798
               
               
               Cow position:chrX:7092894-7093661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:780
               
               
               Alignm identity:560
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 49

               
               
               Conread position:22-798
               
               
               Cow position:chrX:7751194-7751963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:779
               
               
               Alignm identity:567
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):550, 189

               
               
               Conread position:22-798
               
               
               Cow position:chrX:8586384-8587157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:567
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):557, 69

               
               
               Conread position:22-798
               
               
               Cow position:chrX:8669881-8670654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:780
               
               
               Alignm identity:575
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 314

               
               
               Conread position:22-798
               
               
               Cow position:chrX:9193354-9192581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:780
               
               
               Alignm identity:580
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 126

               
               
               Conread position:22-798
               
               
               Cow position:chrX:11465710-11464939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:781
               
               
               Alignm identity:567
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 225

               
               
               Conread position:22-798
               
               
               Cow position:chrX:12655459-12654697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:575
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):557, 172

               
               
               Conread position:22-798
               
               
               Cow position:chrX:13077402-13076634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:567
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):557, 212

               
               
               Conread position:22-798
               
               
               Cow position:chrX:13097976-13097208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:566
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):557, 212

               
               
               Conread position:22-798
               
               
               Cow position:chrX:15180148-15179368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:786
               
               
               Alignm identity:570
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 70

               
               
               Conread position:22-798
               
               
               Cow position:chrX:16274982-16275740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:780
               
               
               Alignm identity:575
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 81

               
               
               Conread position:22-798
               
               
               Cow position:chrX:16363835-16363061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:570
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):555, 406

               
               
               Conread position:22-798
               
               
               Cow position:chrX:17479235-17478459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:781
               
               
               Alignm identity:571
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):393, 303

               
               
               Conread position:22-798
               
               
               Cow position:chrX:18218689-18219460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:780
               
               
               Alignm identity:573
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 191

               
               
               Conread position:22-798
               
               
               Cow position:chrX:22526315-22525541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:780
               
               
               Alignm identity:576
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 197

               
               
               Conread position:22-798
               
               
               Cow position:chrX:22620027-22619245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:786
               
               
               Alignm identity:567
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 206

               
               
               Conread position:22-798
               
               
               Cow position:chrX:28759332-28758578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:562
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):557, 189

               
               
               Conread position:22-798
               
               
               Cow position:chrX:31187946-31187182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:781
               
               
               Alignm identity:569
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 110

               
               
               Conread position:22-798
               
               
               Cow position:chrX:37848297-37849077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:784
               
               
               Alignm identity:575
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 327

               
               
               Conread position:22-798
               
               
               Cow position:chrX:39521194-39521970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:780
               
               
               Alignm identity:583
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 214

               
               
               Conread position:22-801
               
               
               Cow position:chrX:21339690-21340470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:785
               
               
               Alignm identity:563
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):557, 223

               
               
               Conread position:22-801
               
               
               Cow position:chrX:24485126-24484347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:791
               
               
               Alignm identity:567
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 138

               
               
               Conread position:23-488
               
               
               Cow position:chrX:38145349-38145812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):281, 0

               
               
               Conread position:23-504
               
               
               Cow position:chrX:23276408-23276887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):287, 0

               
               
               Conread position:23-759
               
               
               Cow position:chrX:32095662-32094939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:743
               
               
               Alignm identity:545
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 83

               
               
               Conread position:23-784
               
               
               Cow position:chrX:18955226-18954476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:763
               
               
               Alignm identity:562
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):545, 379

               
               
               Conread position:23-797
               
               
               Cow position:chrX:23456282-23455515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:570
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 181

               
               
               Conread position:23-797
               
               
               Cow position:chrX:30232815-30232045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:778
               
               
               Alignm identity:557
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 176

               
               
               Conread position:23-798
               
               
               Cow position:chrX:970063-970830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:779
               
               
               Alignm identity:562
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):367, 192

               
               
               Conread position:23-801
               
               
               Cow position:chrX:23392311-23391533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:782
               
               
               Alignm identity:579
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):469, 55

               
               
               Conread position:23-803
               
               
               Cow position:chrX:26527264-26528046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:785
               
               
               Alignm identity:571
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):367, 357

               
               
               Conread position:27-754
               
               
               Cow position:chrX:22894077-22893350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:745
               
               
               Alignm identity:506
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 25

               
               
               Conread position:28-798
               
               
               Cow position:chrX:28635117-28634353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:774
               
               
               Alignm identity:568
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):216, 57

               
               
               Conread position:28-801
               
               
               Cow position:chrX:5324415-5323657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:775
               
               
               Alignm identity:553
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):551, 183

               
               
               Conread position:29-311
               
               
               Cow position:chrX:6576992-6577272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):182, 204

               
               
               Conread position:29-678
               
               
               Cow position:chrX:8479004-8479644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:651
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):548, 61

               
               
               Conread position:29-759
               
               
               Cow position:chrX:26401172-26400445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:531
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):548, 239

               
               
               Conread position:29-794
               
               
               Cow position:chrX:13398819-13398061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:768
               
               
               Alignm identity:564
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 28

               
               
               Conread position:29-798
               
               
               Cow position:chrX:2101162-2101922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:771
               
               
               Alignm identity:571
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):555, 182

               
               
               Conread position:29-798
               
               
               Cow position:chrX:9007637-9008401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:772
               
               
               Alignm identity:552
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 222

               
               
               Conread position:29-798
               
               
               Cow position:chrX:12280961-12280207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:771
               
               
               Alignm identity:547
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):554, 444

               
               
               Conread position:29-798
               
               
               Cow position:chrX:20316757-20315992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:771
               
               
               Alignm identity:558
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):550, 62

               
               
               Conread position:30-447
               
               
               Cow position:chrX:28506642-28506224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):388, 105

               
               
               Conread position:30-783
               
               
               Cow position:chrX:21828832-21829573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:756
               
               
               Alignm identity:547
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):549, 11

               
               
               Conread position:30-798
               
               
               Cow position:chrX:27427022-27426257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:771
               
               
               Alignm identity:563
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 443

               
               
               Conread position:31-493
               
               
               Cow position:chrX:20360634-20360176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 180

               
               
               Conread position:33-797
               
               
               Cow position:chrX:24088701-24089465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:769
               
               
               Alignm identity:558
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 172

               
               
               Conread position:37-766
               
               
               Cow position:chrX:29854259-29853535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:540
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):540, 13

               
               
               Conread position:38-399
               
               
               Cow position:chrX:25186964-25187324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:38-801
               
               
               Cow position:chrX:16698605-16699368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:769
               
               
               Alignm identity:560
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 166

               
               
               Conread position:41-497
               
               
               Cow position:chrX:41151534-41151987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):287, 0

               
               
               Conread position:41-790
               
               
               Cow position:chrX:1546241-1546990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:752
               
               
               Alignm identity:562
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 163

               
               
               Conread position:41-797
               
               
               Cow position:chrX:15598236-15598993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:759
               
               
               Alignm identity:551
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):542, 432

               
               
               Conread position:41-797
               
               
               Cow position:chrX:26759284-26758542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:761
               
               
               Alignm identity:533
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 28

               
               
               Conread position:41-798
               
               
               Cow position:chrX:26504494-26505247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:770
               
               
               Alignm identity:555
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 40

               
               
               Conread position:51-790
               
               
               Cow position:chrX:30179664-30178940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:740
               
               
               Alignm identity:527
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:52-790
               
               
               Cow position:chrX:17615074-17614362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:752
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 9

               
               
               Conread position:54-801
               
               
               Cow position:chrX:1697539-1696804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:766
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 9

               
               
               Conread position:55-798
               
               
               Cow position:chrX:40057741-40057002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:748
               
               
               Alignm identity:556
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 82

               
               
               Conread position:55-801
               
               
               Cow position:chrX:35017150-35017875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:750
               
               
               Alignm identity:553
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 94

               
               
               Conread position:62-390
               
               
               Cow position:chrX:23839812-23840142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):36, 120

               
               
               Conread position:64-357
               
               
               Cow position:chrX:32467511-32467793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):151, 81

               
               
               Conread position:65-774
               
               
               Cow position:chrX:3398505-3397808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:721
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 39

               
               
               Conread position:67-648
               
               
               Cow position:chrX:22131356-22130793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:583
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):572, 28

               
               
               Conread position:67-714
               
               
               Cow position:chrX:12289600-12288957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:654
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):510, 24

               
               
               Conread position:67-729
               
               
               Cow position:chrX:18939886-18939222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:686
               
               
               Alignm identity:424
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):19, 53

               
               
               Conread position:67-790
               
               
               Cow position:chrX:15252631-15251922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:736
               
               
               Alignm identity:464
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 90

               
               
               Conread position:67-799
               
               
               Cow position:chrX:17632494-17631765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:739
               
               
               Alignm identity:499
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 318

               
               
               Conread position:68-732
               
               
               Cow position:chrX:29813048-29813702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:667
               
               
               Alignm identity:427
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):369, 182

               
               
               Conread position:68-797
               
               
               Cow position:chrX:21656466-21657195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:750
               
               
               Alignm identity:474
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 64

               
               
               Conread position:68-798
               
               
               Cow position:chrX:30174322-30173608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:538
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):235, 28

               
               
               Conread position:68-799
               
               
               Cow position:chrX:28876054-28875359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:475
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):511, 15

               
               
               Conread position:68-801
               
               
               Cow position:chrX:2142648-2143346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:743
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 24

               
               
               Conread position:68-801
               
               
               Cow position:chrX:17885995-17886725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:755
               
               
               Alignm identity:478
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 74

               
               
               Conread position:68-804
               
               
               Cow position:chrX:21270832-21270127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:489
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):512, 150

               
               
               Conread position:69-567
               
               
               Cow position:chrX:13052023-13052495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 65

               
               
               Conread position:69-691
               
               
               Cow position:chrX:19185610-19185012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:625
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 164

               
               
               Conread position:69-798
               
               
               Cow position:chrX:19927647-19928354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 256

               
               
               Conread position:70-557
               
               
               Cow position:chrX:3576956-3577442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:316
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):39, 228

               
               
               Conread position:70-796
               
               
               Cow position:chrX:5858475-5857769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:433
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):31, 39

               
               
               Conread position:71-797
               
               
               Cow position:chrX:24275006-24275733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:541
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 405

               
               
               Conread position:72-510
               
               
               Cow position:chrX:5834825-5834396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 136

               
               
               Conread position:72-801
               
               
               Cow position:chrX:21602224-21602945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:733
               
               
               Alignm identity:554
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 309

               
               
               Conread position:72-801
               
               
               Cow position:chrX:21633245-21632521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:549
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 233

               
               
               Conread position:75-789
               
               
               Cow position:chrX:20698922-20698245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):255, 140

               
               
               Conread position:76-606
               
               
               Cow position:chrX:37757129-37757644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 76

               
               
               Conread position:78-371
               
               
               Cow position:chrX:23882637-23882357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):72, 23

               
               
               Conread position:78-666
               
               
               Cow position:chrX:30666595-30666008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:591
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 149

               
               
               Conread position:78-783
               
               
               Cow position:chrX:17668940-17668254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:709
               
               
               Alignm identity:525
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 35

               
               
               Conread position:78-801
               
               
               Cow position:chrX:30143040-30142330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:729
               
               
               Alignm identity:527
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 21

               
               
               Conread position:82-801
               
               
               Cow position:chrX:20795964-20796678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:732
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 25

               
               
               Conread position:85-318
               
               
               Cow position:chrX:23041969-23041729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):26, 17

               
               
               Conread position:85-497
               
               
               Cow position:chrX:28651764-28651366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 110

               
               
               Conread position:85-797
               
               
               Cow position:chrX:21222282-21222991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:717
               
               
               Alignm identity:527
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 38

               
               
               Conread position:95-703
               
               
               Cow position:chrX:2380150-2380739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 80

               
               
               Conread position:97-407
               
               
               Cow position:chrX:11534849-11535153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 108

               
               
               Conread position:97-552
               
               
               Cow position:chrX:30046752-30046300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):413, 226

               
               
               Conread position:97-798
               
               
               Cow position:chrX:24137032-24136342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:706
               
               
               Alignm identity:532
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 108

               
               
               Conread position:97-799
               
               
               Cow position:chrX:21290122-21289427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:704
               
               
               Alignm identity:529
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):482, 186

               
               
               Conread position:99-557
               
               
               Cow position:chrX:39717162-39717619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 240

               
               
               Conread position:99-798
               
               
               Cow position:chrX:20803504-20804190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:703
               
               
               Alignm identity:526
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 185

               
               
               Conread position:100-379
               
               
               Cow position:chrX:6886988-6886723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):115, 124

               
               
               Conread position:100-648
               
               
               Cow position:chrX:21069435-21069970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:349
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):23, 95

               
               
               Conread position:100-729
               
               
               Cow position:chrX:15309887-15309264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:638
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 21

               
               
               Conread position:100-797
               
               
               Cow position:chrX:22514781-22514094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:708
               
               
               Alignm identity:449
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 43

               
               
               Conread position:102-433
               
               
               Cow position:chrX:29867700-29867364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):48, 41

               
               
               Conread position:102-798
               
               
               Cow position:chrX:13007265-13006562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:527
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 141

               
               
               Conread position:103-450
               
               
               Cow position:chrX:19189745-19190079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):111, 120

               
               
               Conread position:103-786
               
               
               Cow position:chrX:16967682-16966998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:700
               
               
               Alignm identity:428
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):11, 110

               
               
               Conread position:104-798
               
               
               Cow position:chrX:7029559-7030251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:698
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 143

               
               
               Conread position:104-801
               
               
               Cow position:chrX:20426304-20426995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:715
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 43

               
               
               Conread position:105-384
               
               
               Cow position:chrX:27677646-27677919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):45, 36

               
               
               Conread position:107-803
               
               
               Cow position:chrX:24114793-24114119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:705
               
               
               Alignm identity:450
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 8

               
               
               Conread position:108-648
               
               
               Cow position:chrX:18843923-18843399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:546
               
               
               Alignm identity:343
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):106, 37

               
               
               Conread position:108-752
               
               
               Cow position:chrX:34839607-34838990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:651
               
               
               Alignm identity:417
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 6

               
               
               Conread position:108-794
               
               
               Cow position:chrX:29951191-29950521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:690
               
               
               Alignm identity:493
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):407, 24

               
               
               Conread position:110-771
               
               
               Cow position:chrX:32430060-32430694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:677
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 192

               
               
               Conread position:110-797
               
               
               Cow position:chrX:27990401-27989718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:703
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 193

               
               
               Conread position:114-798
               
               
               Cow position:chrX:8454138-8454815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:686
               
               
               Alignm identity:521
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):465, 35

               
               
               Conread position:115-506
               
               
               Cow position:chrX:30145828-30145446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:259
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):75, 151

               
               
               Conread position:115-732
               
               
               Cow position:chrX:17250935-17250334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:389
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):377, 86

               
               
               Conread position:116-801
               
               
               Cow position:chrX:6016071-6015396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:696
               
               
               Alignm identity:461
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 34

               
               
               Conread position:118-432
               
               
               Cow position:chrX:26628931-26628623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:118-493
               
               
               Cow position:chrX:25332464-25332846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 37

               
               
               Conread position:119-618
               
               
               Cow position:chrX:4795309-4795810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):232, 96

               
               
               Conread position:125-798
               
               
               Cow position:chrX:23046537-23047207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:675
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):451, 101

               
               
               Conread position:132-798
               
               
               Cow position:chrX:22777713-22778375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:668
               
               
               Alignm identity:520
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):447, 196

               
               
               Conread position:137-511
               
               
               Cow position:chrX:29092906-29093280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 336

               
               
               Conread position:149-697
               
               
               Cow position:chrX:34343978-34344523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:365
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):55, 59

               
               
               Conread position:151-798
               
               
               Cow position:chrX:23018748-23019387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:651
               
               
               Alignm identity:469
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 173

               
               
               Conread position:153-783
               
               
               Cow position:chrX:9061600-9062222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:642
               
               
               Alignm identity:404
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):29, 43

               
               
               Conread position:155-798
               
               
               Cow position:chrX:6909911-6909283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:652
               
               
               Alignm identity:482
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):244, 18

               
               
               Conread position:156-784
               
               
               Cow position:chrX:30184467-30183845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:634
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 5

               
               
               Conread position:164-803
               
               
               Cow position:chrX:12478151-12478787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:645
               
               
               Alignm identity:470
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 83

               
               
               Conread position:170-798
               
               
               Cow position:chrX:10532123-10531495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:632
               
               
               Alignm identity:473
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 63

               
               
               Conread position:171-801
               
               
               Cow position:chrX:26428592-26427981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:645
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 160

               
               
               Conread position:174-796
               
               
               Cow position:chrX:23330865-23330254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:387
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):85, 300

               
               
               Conread position:174-801
               
               
               Cow position:chrX:25564950-25564318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:650
               
               
               Alignm identity:417
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):15, 29

               
               
               Conread position:185-599
               
               
               Cow position:chrX:31198052-31198472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 20

               
               
               Conread position:185-798
               
               
               Cow position:chrX:27494155-27494773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:620
               
               
               Alignm identity:463
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 291

               
               
               Conread position:193-798
               
               
               Cow position:chrX:30010497-30011102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:150
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:201-595
               
               
               Cow position:chrX:6276124-6275733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):335, 137

               
               
               Conread position:203-798
               
               
               Cow position:chrX:7481075-7481666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:598
               
               
               Alignm identity:447
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 23

               
               
               Conread position:214-400
               
               
               Cow position:chrX:28604323-28604136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):24, 17

               
               
               Conread position:217-792
               
               
               Cow position:chrX:19942880-19942320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:583
               
               
               Alignm identity:368
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):241, 17

               
               
               Conread position:219-797
               
               
               Cow position:chrX:6283600-6283019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 41

               
               
               Conread position:220-669
               
               
               Cow position:chrX:2582703-2583154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:296
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):191, 7

               
               
               Conread position:222-702
               
               
               Cow position:chrX:24482002-24481525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:316
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):24, 252

               
               
               Conread position:224-367
               
               
               Cow position:chrX:24276016-24275873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):126, 20

               
               
               Conread position:224-798
               
               
               Cow position:chrX:319960-320530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:576
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):353, 198

               
               
               Conread position:224-798
               
               
               Cow position:chrX:22583223-22582636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:591
               
               
               Alignm identity:437
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 94

               
               
               Conread position:227-659
               
               
               Cow position:chrX:12316661-12316236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:283
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):106, 48

               
               
               Conread position:233-800
               
               
               Cow position:chrX:27716252-27716804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:571
               
               
               Alignm identity:354
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):250, 25

               
               
               Conread position:234-385
               
               
               Cow position:chrX:982166-982317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:234-798
               
               
               Cow position:chrX:29873058-29872502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:414
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 92

               
               
               Conread position:243-447
               
               
               Cow position:chrX:28553583-28553780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:243-798
               
               
               Cow position:chrX:2563349-2562794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:557
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):336, 230

               
               
               Conread position:245-777
               
               
               Cow position:chrX:12998050-12997537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:538
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):333, 76

               
               
               Conread position:246-640
               
               
               Cow position:chrX:23344618-23344228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:264
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):161, 152

               
               
               Conread position:246-797
               
               
               Cow position:chrX:28562699-28562152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:553
               
               
               Alignm identity:406
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):333, 79

               
               
               Conread position:263-753
               
               
               Cow position:chrX:21794628-21795113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):315, 58

               
               
               Conread position:266-432
               
               
               Cow position:chrX:12973901-12973737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:266-502
               
               
               Cow position:chrX:41889368-41889135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):217, 75

               
               
               Conread position:266-607
               
               
               Cow position:chrX:35020517-35020857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 121

               
               
               Conread position:291-798
               
               
               Cow position:chrX:35529417-35529925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):288, 45

               
               
               Conread position:318-542
               
               
               Cow position:chrX:16935972-16935751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:318-797
               
               
               Cow position:chrX:23041532-23041060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 43

               
               
               Conread position:318-798
               
               
               Cow position:chrX:18660198-18659720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):261, 44

               
               
               Conread position:319-801
               
               
               Cow position:chrX:34988465-34988963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:353
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 107

               
               
               Conread position:322-797
               
               
               Cow position:chrX:29285022-29285479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):257, 23

               
               
               Conread position:322-804
               
               
               Cow position:chrX:5839925-5840401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:358
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):255, 83

               
               
               Conread position:323-801
               
               
               Cow position:chrX:2537183-2536716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):254, 149

               
               
               Conread position:325-801
               
               
               Cow position:chrX:9124949-9125425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):254, 149

               
               
               Conread position:330-799
               
               
               Cow position:chrX:30369405-30368954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):248, 57

               
               
               Conread position:336-801
               
               
               Cow position:chrX:26488808-26489267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:292
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):18, 36

               
               
               Conread position:346-671
               
               
               Cow position:chrX:32468331-32468640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):233, 80

               
               
               Conread position:346-798
               
               
               Cow position:chrX:41411409-41410958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 14

               
               
               Conread position:374-798
               
               
               Cow position:chrX:29947343-29947770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 102

               
               
               Conread position:374-804
               
               
               Cow position:chrX:40247675-40247247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 54

               
               
               Conread position:375-798
               
               
               Cow position:chrX:39564289-39563868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 53

               
               
               Conread position:387-797
               
               
               Cow position:chrX:12670208-12669801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 30

               
               
               Conread position:389-798
               
               
               Cow position:chrX:28603801-28603396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 84

               
               
               Conread position:390-734
               
               
               Cow position:chrX:26432601-26432935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):39, 51

               
               
               Conread position:410-798
               
               
               Cow position:chrX:37811837-37812225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 63

               
               
               Conread position:413-671
               
               
               Cow position:chrX:21586843-21587101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 62

               
               
               Conread position:420-798
               
               
               Cow position:chrX:1943358-1942981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 53

               
               
               Conread position:429-798
               
               
               Cow position:chrX:982332-982701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 44

               
               
               Conread position:430-718
               
               
               Cow position:chrX:6886151-6885880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):212, 35

               
               
               Conread position:436-801
               
               
               Cow position:chrX:12973530-12973165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 306

               
               
               Conread position:438-798
               
               
               Cow position:chrX:44386176-44386539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 17

               
               
               Conread position:443-741
               
               
               Cow position:chrX:23420081-23419791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):71, 32

               
               
               Conread position:443-801
               
               
               Cow position:chrX:26628324-26627966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 30

               
               
               Conread position:455-798
               
               
               Cow position:chrX:28584700-28585043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 19

               
               
               Conread position:460-713
               
               
               Cow position:chrX:5336743-5336491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 13

               
               
               Conread position:460-786
               
               
               Cow position:chrX:35390368-35390046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 13

               
               
               Conread position:463-798
               
               
               Cow position:chrX:16461405-16461733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 10

               
               
               Conread position:470-801
               
               
               Cow position:chrX:30133103-30132769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 9

               
               
               Conread position:478-804
               
               
               Cow position:chrX:26421441-26421756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):102, 50

               
               
               Conread position:479-797
               
               
               Cow position:chrX:38146048-38146368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:487-789
               
               
               Cow position:chrX:29757910-29758215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 97

               
               
               Conread position:488-763
               
               
               Cow position:chrX:5834212-5833936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:503-801
               
               
               Cow position:chrX:15232133-15232426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):74, 62

               
               
               Conread position:511-663
               
               
               Cow position:chrX:36250872-36250719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):21, 146

               
               
               Conread position:512-800
               
               
               Cow position:chrX:29998569-29998852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 45

               
               
               Conread position:522-781
               
               
               Cow position:chrX:38576037-38575775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 75

               
               
               Conread position:523-779
               
               
               Cow position:chrX:11663718-11663461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:528-798
               
               
               Cow position:chrX:30056435-30056708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 18

               
               
               Conread position:530-801
               
               
               Cow position:chrX:31724820-31725092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:535-802
               
               
               Cow position:chrX:29783219-29782956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):44, 14

               
               
               Conread position:543-801
               
               
               Cow position:chrX:24139219-24138960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:191
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):36, 157

               
               
               Conread position:545-798
               
               
               Cow position:chrX:39719246-39719503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 160

               
               
               Conread position:557-801
               
               
               Cow position:chrX:10418129-10417891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):170, 136

               
               
               Conread position:561-798
               
               
               Cow position:chrX:30044320-30044082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:562-798
               
               
               Cow position:chrX:31493250-31493483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 28

               
               
               Conread position:565-790
               
               
               Cow position:chrX:24101961-24101739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):113, 74

               
               
               Conread position:578-798
               
               
               Cow position:chrX:12353083-12353303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:579-791
               
               
               Cow position:chrX:47457854-47457641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):62, 93

               
               
               Conread position:582-798
               
               
               Cow position:chrX:17050940-17051158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:584-786
               
               
               Cow position:chrX:354347-354145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):65, 112

               
               
               Conread position:586-791
               
               
               Cow position:chrX:35021115-35021315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:162
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):11, 49

               
               
               Conread position:587-801
               
               
               Cow position:chrX:41907434-41907223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):147, 119

               
               
               Conread position:600-801
               
               
               Cow position:chrX:13052497-13052693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:601-803
               
               
               Cow position:chrX:16812727-16812528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:163
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:603-779
               
               
               Cow position:chrX:23276890-23277066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:145
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:608-793
               
               
               Cow position:chrX:20360174-20359993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:156
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:614-797
               
               
               Cow position:chrX:37142711-37142528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:147
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:615-798
               
               
               Cow position:chrX:11433581-11433764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:151
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:617-762
               
               
               Cow position:chrX:3421580-3421436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:621-794
               
               
               Cow position:chrX:6275732-6275558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:148
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:628-801
               
               
               Cow position:chrX:29096096-29096267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:643-798
               
               
               Cow position:chrX:30055828-30055673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:134
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:644-801
               
               
               Cow position:chrX:13417902-13417748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:652-783
               
               
               Cow position:chrX:14594672-14594803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:106
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:654-794
               
               
               Cow position:chrX:41851480-41851340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:122
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:657-798
               
               
               Cow position:chrX:4795811-4795954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:660-797
               
               
               Cow position:chrX:30990016-30990155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:662-790
               
               
               Cow position:chrX:29884907-29885038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:664-795
               
               
               Cow position:chrX:21587120-21587251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:683-797
               
               
               Cow position:chrX:3376160-3376046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:691-798
               
               
               Cow position:chrX:12342912-12343019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:86
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0